AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373590 MtrunA17_Chr3g0123001 100.000 207 0 0 1 207 1 207 6.16e-155 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373590 AT3G25980.1 87.981 208 24 1 1 207 1 208 1.47e-136 381
Msa0373590 AT3G25980.2 85.577 208 25 2 1 207 1 204 1.54e-130 365
Msa0373590 AT3G25980.3 87.742 155 19 0 53 207 1 155 2.38e-101 290
Msa0373590 AT3G25980.4 87.742 155 19 0 53 207 1 155 2.38e-101 290

Find 70 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAAGAGGATAATAAAAT+AGG 0.177521 3_1:-72654551 None:intergenic
GTGAAAGGATAGAGAAATTT+TGG 0.192674 3_1:-72654631 None:intergenic
AATTTAACCGCTCAGCTTTC+TGG 0.243002 3_1:+72655078 Msa0373590:CDS
CTGGCACAATCCACTTGATT+TGG 0.286625 3_1:-72656472 None:intergenic
ACGAAGAGTGATTATGTCTT+TGG 0.305082 3_1:-72654679 None:intergenic
AGCGGTTAAATTGGTTATAA+AGG 0.310452 3_1:-72655067 None:intergenic
AGAAAGCTGAGCGGTTAAAT+TGG 0.334716 3_1:-72655076 None:intergenic
TGCTGAAATTCCACCTTTCA+AGG 0.344954 3_1:-72655897 None:intergenic
AACCAGGATATGCTGCTAAC+AGG 0.352861 3_1:+72654829 Msa0373590:intron
GAAAAGAGGATAATAAAATA+GGG 0.362114 3_1:-72654550 None:intergenic
ACCATAATTCTGAAAAGATT+AGG 0.370391 3_1:-72656599 None:intergenic
ACCTTCACAAAGCTTTCTTC+TGG 0.383617 3_1:-72654994 None:intergenic
TTCAGGTGTGTTTGATGTGT+TGG 0.386152 3_1:+72656148 Msa0373590:intron
CCATAATTCTGAAAAGATTA+GGG 0.387345 3_1:-72656598 None:intergenic
GAATGCAGTTTCACCATTTG+TGG 0.390803 3_1:-72656239 None:intergenic
CGAGTTGGAAAGAAACTTGT+AGG 0.393604 3_1:-72654524 None:intergenic
TGTGGATTAGCAATCAGCTT+TGG 0.412638 3_1:-72656221 None:intergenic
CGAAGCAATCTGCCTCATAA+TGG 0.418513 3_1:-72655998 None:intergenic
TCTATCCTTTCACTTGATCA+TGG 0.425196 3_1:+72654641 Msa0373590:exon
TTCATCCAAGCATGGCAAAT+AGG 0.430316 3_1:-72656028 None:intergenic
ACTGCATTCCTTTGATACTA+AGG 0.432948 3_1:+72656253 Msa0373590:CDS
AACAGAACCATGACAAGAAA+AGG 0.433807 3_1:-72656436 None:intergenic
CATCACCTATTTGCCATGCT+TGG 0.438812 3_1:+72656023 Msa0373590:CDS
TTTGTGAAGGTGAAGAAATA+TGG 0.439428 3_1:+72655006 Msa0373590:CDS
GTGAATAGAAAATTCACAAC+TGG 0.455373 3_1:-72656491 None:intergenic
TTGTAGGGGAAGCGCCTTAA+CGG 0.457513 3_1:-72654508 None:intergenic
GCAATCGTTAGCGAGTTCTT+CGG 0.465376 3_1:+72654711 Msa0373590:CDS
GGAAATCATGAGAGAGATAC+AGG 0.478386 3_1:+72655975 Msa0373590:CDS
AAAAGCAGAACTAGCCGTTA+AGG 0.490615 3_1:+72654494 Msa0373590:five_prime_UTR
AATCGAAAATGAGAGAAAAG+AGG 0.498748 3_1:-72654564 None:intergenic
GCTGATTGCTAATCCACAAA+TGG 0.506949 3_1:+72656226 Msa0373590:CDS
TCACTCTCAGTCCAAGTGAA+TGG 0.507147 3_1:-72656197 None:intergenic
AAAGACATAATCACTCTTCG+TGG 0.509870 3_1:+72654681 Msa0373590:CDS
TGTCGAGAAGGGCGAGTCAA+GGG 0.513652 3_1:+72655939 Msa0373590:CDS
TGATGCCATGATCAAGTGAA+AGG 0.520689 3_1:-72654646 None:intergenic
GATAAACACCTCGATTGTAA+AGG 0.522252 3_1:-72654972 None:intergenic
GAGAGATACAGGCCATTATG+AGG 0.523727 3_1:+72655986 Msa0373590:CDS
ATCATACAAGAACGACGAAT+GGG 0.527471 3_1:+72656385 Msa0373590:CDS
GAGTTGGAAAGAAACTTGTA+GGG 0.535132 3_1:-72654523 None:intergenic
TCCAGAAGAAAGCTTTGTGA+AGG 0.536393 3_1:+72654993 Msa0373590:CDS
TTGTCGAGAAGGGCGAGTCA+AGG 0.542198 3_1:+72655938 Msa0373590:CDS
TGATAACGAGGTTGTCGAGA+AGG 0.548204 3_1:+72655927 Msa0373590:CDS
TTCAGCATCCTTTACAATCG+AGG 0.552090 3_1:+72654964 Msa0373590:intron
TGAAAAGAATGGCTTGAAGC+TGG 0.556155 3_1:+72655823 Msa0373590:intron
AATAAAATAGGGATTCGAGT+TGG 0.557900 3_1:-72654539 None:intergenic
ATGTGGAAGTTCCATTCACT+TGG 0.563681 3_1:+72656186 Msa0373590:CDS
AAATTGCACCTTAGTATCAA+AGG 0.565710 3_1:-72656261 None:intergenic
GATAACGAGGTTGTCGAGAA+GGG 0.569913 3_1:+72655928 Msa0373590:CDS
GTTATAATGAGCAAGTCCAC+TGG 0.576805 3_1:+72655868 Msa0373590:CDS
TATCATACAAGAACGACGAA+TGG 0.597347 3_1:+72656384 Msa0373590:CDS
CCACTGGTGAAGTCCTTGAA+AGG 0.598488 3_1:+72655884 Msa0373590:CDS
CAGCATTGAGACTGATAACG+AGG 0.605364 3_1:+72655915 Msa0373590:CDS
CCTTTCAAGGACTTCACCAG+TGG 0.608166 3_1:-72655884 None:intergenic
CTGGTGAAGTCCTTGAAAGG+TGG 0.608400 3_1:+72655887 Msa0373590:CDS
TTTGGTTATGCAGATTCACA+AGG 0.610649 3_1:+72656349 Msa0373590:intron
CTTCAGTAAGCAACATCGGA+AGG 0.612019 3_1:-72655029 None:intergenic
TGGTTAGATGTGTACTGATG+TGG 0.620853 3_1:+72656515 Msa0373590:three_prime_UTR
TTGAAGCTGGCAAGTTACAG+AGG 0.628270 3_1:+72655836 Msa0373590:CDS
GATGTTGCTTACTGAAGATG+AGG 0.636613 3_1:+72655035 Msa0373590:CDS
GGCATATACTAACACAGATG+TGG 0.641456 3_1:+72656169 Msa0373590:CDS
AAGGAAAACATACAAAAGTG+AGG 0.643049 3_1:-72656552 None:intergenic
TCATCTTCAGTAAGCAACAT+CGG 0.643466 3_1:-72655033 None:intergenic
ATACAAGGTTCATCCAAGCA+TGG 0.651912 3_1:-72656036 None:intergenic
CCATGACAAGAAAAGGACAC+AGG 0.655983 3_1:-72656429 None:intergenic
GTCAAGGGAGAAGAGTGACA+AGG 0.685729 3_1:+72655954 Msa0373590:CDS
TGGACTTGCTCATTATAACA+AGG 0.691125 3_1:-72655864 None:intergenic
AGTTGGAAAGAAACTTGTAG+GGG 0.706272 3_1:-72654522 None:intergenic
TGACAAGAAAAGGACACAGG+CGG 0.707083 3_1:-72656426 None:intergenic
ATGTTGCTTACTGAAGATGA+GGG 0.718973 3_1:+72655036 Msa0373590:CDS
TTAGTTACCAGAAAGCTGAG+CGG 0.758740 3_1:-72655085 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATAAAATTTAAGTGT+TGG + chr3_1:72655183-72655202 Msa0373590:intron 15.0%
!! ATTGATAAAATTTAAGTGTT+GGG + chr3_1:72655184-72655203 Msa0373590:intron 15.0%
!!! TTTTTTTGTGATATCATTTT+AGG + chr3_1:72655518-72655537 Msa0373590:intron 15.0%
!! ATAACAGAACATTTATATTA+TGG - chr3_1:72655712-72655731 None:intergenic 15.0%
!! ATAATATAAATGTTCTGTTA+TGG + chr3_1:72655711-72655730 Msa0373590:intron 15.0%
!! AATTGATAAAATTTAAGTGT+TGG + chr3_1:72655183-72655202 Msa0373590:intron 15.0%
!! ATTGATAAAATTTAAGTGTT+GGG + chr3_1:72655184-72655203 Msa0373590:intron 15.0%
!!! TTTTTTTGTGATATCATTTT+AGG + chr3_1:72655518-72655537 Msa0373590:intron 15.0%
!! ATAACAGAACATTTATATTA+TGG - chr3_1:72655712-72655731 None:intergenic 15.0%
!! ATAATATAAATGTTCTGTTA+TGG + chr3_1:72655711-72655730 Msa0373590:intron 15.0%
!! GAAAAGAGGATAATAAAATA+GGG - chr3_1:72654553-72654572 None:intergenic 20.0%
!! AGAAAAGAGGATAATAAAAT+AGG - chr3_1:72654554-72654573 None:intergenic 20.0%
!!! TAGAGAAATTTTGGTAATTT+TGG - chr3_1:72654625-72654644 None:intergenic 20.0%
!!! TTTTGTGATATTGATTAACA+AGG + chr3_1:72654915-72654934 Msa0373590:intron 20.0%
!!! TTTGTGATATTGATTAACAA+GGG + chr3_1:72654916-72654935 Msa0373590:intron 20.0%
!!! AAGGGTTTTGTTTATTTTAT+TGG + chr3_1:72654934-72654953 Msa0373590:intron 20.0%
!!! AGGGTTTTGTTTATTTTATT+GGG + chr3_1:72654935-72654954 Msa0373590:intron 20.0%
!! TTATAGAAAGAAACAAAGTA+GGG - chr3_1:72655120-72655139 None:intergenic 20.0%
!! CAAAGTAAATTGGTTATAAA+GGG - chr3_1:72655155-72655174 None:intergenic 20.0%
!! ACAAAGTAAATTGGTTATAA+AGG - chr3_1:72655156-72655175 None:intergenic 20.0%
!! TTTCTCTAAACAAAGTAAAT+TGG - chr3_1:72655165-72655184 None:intergenic 20.0%
!!! ACATGTATACTTTTTTGTTA+TGG + chr3_1:72655410-72655429 Msa0373590:intron 20.0%
!!! TTGTTTATACTATTTTGTTG+TGG + chr3_1:72655574-72655593 Msa0373590:intron 20.0%
!!! TTGCTTATACTATTTTGTTA+TGG + chr3_1:72655627-72655646 Msa0373590:intron 20.0%
!! ATTTATATTATGGTTCACAA+TGG - chr3_1:72655702-72655721 None:intergenic 20.0%
!!! GCTATAAGTAATACTTATTT+TGG + chr3_1:72656331-72656350 Msa0373590:intron 20.0%
!! GAAAAGAGGATAATAAAATA+GGG - chr3_1:72654553-72654572 None:intergenic 20.0%
!! AGAAAAGAGGATAATAAAAT+AGG - chr3_1:72654554-72654573 None:intergenic 20.0%
!!! TAGAGAAATTTTGGTAATTT+TGG - chr3_1:72654625-72654644 None:intergenic 20.0%
!!! TTTTGTGATATTGATTAACA+AGG + chr3_1:72654915-72654934 Msa0373590:intron 20.0%
!!! TTTGTGATATTGATTAACAA+GGG + chr3_1:72654916-72654935 Msa0373590:intron 20.0%
!!! AAGGGTTTTGTTTATTTTAT+TGG + chr3_1:72654934-72654953 Msa0373590:intron 20.0%
!!! AGGGTTTTGTTTATTTTATT+GGG + chr3_1:72654935-72654954 Msa0373590:intron 20.0%
!! TTATAGAAAGAAACAAAGTA+GGG - chr3_1:72655120-72655139 None:intergenic 20.0%
!! CAAAGTAAATTGGTTATAAA+GGG - chr3_1:72655155-72655174 None:intergenic 20.0%
!! ACAAAGTAAATTGGTTATAA+AGG - chr3_1:72655156-72655175 None:intergenic 20.0%
!! TTTCTCTAAACAAAGTAAAT+TGG - chr3_1:72655165-72655184 None:intergenic 20.0%
!!! ACATGTATACTTTTTTGTTA+TGG + chr3_1:72655410-72655429 Msa0373590:intron 20.0%
!!! TTGTTTATACTATTTTGTTG+TGG + chr3_1:72655574-72655593 Msa0373590:intron 20.0%
!!! TTGCTTATACTATTTTGTTA+TGG + chr3_1:72655627-72655646 Msa0373590:intron 20.0%
!! ATTTATATTATGGTTCACAA+TGG - chr3_1:72655702-72655721 None:intergenic 20.0%
!!! GCTATAAGTAATACTTATTT+TGG + chr3_1:72656331-72656350 Msa0373590:intron 20.0%
!!! TTTTGGTAATTTTGGTAGTT+GGG - chr3_1:72654617-72654636 None:intergenic 25.0%
!!! ATTTTGGTAATTTTGGTAGT+TGG - chr3_1:72654618-72654637 None:intergenic 25.0%
! TAGAAAAATGAGTGAAATTG+GGG - chr3_1:72654766-72654785 None:intergenic 25.0%
! GTAGAAAAATGAGTGAAATT+GGG - chr3_1:72654767-72654786 None:intergenic 25.0%
! TGTAGAAAAATGAGTGAAAT+TGG - chr3_1:72654768-72654787 None:intergenic 25.0%
! TAGCACAAAAAAATAATCAG+TGG - chr3_1:72654803-72654822 None:intergenic 25.0%
!! GTTTGATTCTCTTTGTTTAA+GGG + chr3_1:72654851-72654870 Msa0373590:intron 25.0%
! GTTATAGAAAGAAACAAAGT+AGG - chr3_1:72655121-72655140 None:intergenic 25.0%
! GTTATAAAGGGTTGTTAAAT+TGG - chr3_1:72655143-72655162 None:intergenic 25.0%
! CATTTCATTTGACAAAATCA+CGG + chr3_1:72655251-72655270 Msa0373590:intron 25.0%
!!! GTTTTTTTGTGATATCATTG+TGG + chr3_1:72655769-72655788 Msa0373590:intron 25.0%
! ATTCAAACAGTTTAATCATC+AGG - chr3_1:72655801-72655820 None:intergenic 25.0%
! TGTTTGAATGTTGAAAAGAA+TGG + chr3_1:72655812-72655831 Msa0373590:intron 25.0%
!! TTTTATCTCCTAGTTGAATT+TGG + chr3_1:72656117-72656136 Msa0373590:intron 25.0%
! CAGTCGATAAATAACAAAAT+TGG - chr3_1:72656294-72656313 None:intergenic 25.0%
! TAAGTATTACTTATAGCCAA+AGG - chr3_1:72656328-72656347 None:intergenic 25.0%
!!! GTTATTTTTTCCAAATCAAG+TGG + chr3_1:72656462-72656481 Msa0373590:three_prime_UTR 25.0%
!! TTGTGAATTTTCTATTCACA+TGG + chr3_1:72656495-72656514 Msa0373590:three_prime_UTR 25.0%
!! ACTTTTGTATGTTTTCCTTT+TGG + chr3_1:72656556-72656575 Msa0373590:three_prime_UTR 25.0%
!! CCATAATTCTGAAAAGATTA+GGG - chr3_1:72656601-72656620 None:intergenic 25.0%
!! ACCATAATTCTGAAAAGATT+AGG - chr3_1:72656602-72656621 None:intergenic 25.0%
!!! TTTTGGTAATTTTGGTAGTT+GGG - chr3_1:72654617-72654636 None:intergenic 25.0%
!!! ATTTTGGTAATTTTGGTAGT+TGG - chr3_1:72654618-72654637 None:intergenic 25.0%
! TAGAAAAATGAGTGAAATTG+GGG - chr3_1:72654766-72654785 None:intergenic 25.0%
! GTAGAAAAATGAGTGAAATT+GGG - chr3_1:72654767-72654786 None:intergenic 25.0%
! TGTAGAAAAATGAGTGAAAT+TGG - chr3_1:72654768-72654787 None:intergenic 25.0%
! TAGCACAAAAAAATAATCAG+TGG - chr3_1:72654803-72654822 None:intergenic 25.0%
!! GTTTGATTCTCTTTGTTTAA+GGG + chr3_1:72654851-72654870 Msa0373590:intron 25.0%
! GTTATAGAAAGAAACAAAGT+AGG - chr3_1:72655121-72655140 None:intergenic 25.0%
! GTTATAAAGGGTTGTTAAAT+TGG - chr3_1:72655143-72655162 None:intergenic 25.0%
! CATTTCATTTGACAAAATCA+CGG + chr3_1:72655251-72655270 Msa0373590:intron 25.0%
!!! GTTTTTTTGTGATATCATTG+TGG + chr3_1:72655769-72655788 Msa0373590:intron 25.0%
! ATTCAAACAGTTTAATCATC+AGG - chr3_1:72655801-72655820 None:intergenic 25.0%
! TGTTTGAATGTTGAAAAGAA+TGG + chr3_1:72655812-72655831 Msa0373590:intron 25.0%
!! TTTTATCTCCTAGTTGAATT+TGG + chr3_1:72656117-72656136 Msa0373590:intron 25.0%
! CAGTCGATAAATAACAAAAT+TGG - chr3_1:72656294-72656313 None:intergenic 25.0%
! TAAGTATTACTTATAGCCAA+AGG - chr3_1:72656328-72656347 None:intergenic 25.0%
!!! GTTATTTTTTCCAAATCAAG+TGG + chr3_1:72656462-72656481 Msa0373590:three_prime_UTR 25.0%
!! TTGTGAATTTTCTATTCACA+TGG + chr3_1:72656495-72656514 Msa0373590:three_prime_UTR 25.0%
!! ACTTTTGTATGTTTTCCTTT+TGG + chr3_1:72656556-72656575 Msa0373590:three_prime_UTR 25.0%
!! CCATAATTCTGAAAAGATTA+GGG - chr3_1:72656601-72656620 None:intergenic 25.0%
!! ACCATAATTCTGAAAAGATT+AGG - chr3_1:72656602-72656621 None:intergenic 25.0%
AATAAAATAGGGATTCGAGT+TGG - chr3_1:72654542-72654561 None:intergenic 30.0%
AATCGAAAATGAGAGAAAAG+AGG - chr3_1:72654567-72654586 None:intergenic 30.0%
! GTGAAAGGATAGAGAAATTT+TGG - chr3_1:72654634-72654653 None:intergenic 30.0%
AGAAAAATGAGTGAAATTGG+GGG - chr3_1:72654765-72654784 None:intergenic 30.0%
! GGTTTGATTCTCTTTGTTTA+AGG + chr3_1:72654850-72654869 Msa0373590:intron 30.0%
TTTGTGAAGGTGAAGAAATA+TGG + chr3_1:72655006-72655025 Msa0373590:CDS 30.0%
AGCGGTTAAATTGGTTATAA+AGG - chr3_1:72655070-72655089 None:intergenic 30.0%
AAAGAAACAAAGTAGGGTTA+GGG - chr3_1:72655114-72655133 None:intergenic 30.0%
! TAGATTTTGCAAAGTCAATC+TGG + chr3_1:72655306-72655325 Msa0373590:intron 30.0%
! GTTGACTCAATAATTTGAGT+AGG - chr3_1:72655496-72655515 None:intergenic 30.0%
ACTCACTCTCAAATTCAATT+AGG - chr3_1:72655748-72655767 None:intergenic 30.0%
TAATTGAATTTGAGAGTGAG+TGG + chr3_1:72655747-72655766 Msa0373590:intron 30.0%
AACAGTTTAATCATCAGGAA+CGG - chr3_1:72655796-72655815 None:intergenic 30.0%
ACAAATAGCCAAATTCAACT+AGG - chr3_1:72656128-72656147 None:intergenic 30.0%
TGAATTTGGCTATTTGTTTC+AGG + chr3_1:72656131-72656150 Msa0373590:intron 30.0%
AAATTGCACCTTAGTATCAA+AGG - chr3_1:72656264-72656283 None:intergenic 30.0%
TTTGATACTAAGGTGCAATT+TGG + chr3_1:72656263-72656282 Msa0373590:intron 30.0%
!! TTGTTATTTATCGACTGACA+TGG + chr3_1:72656297-72656316 Msa0373590:intron 30.0%
GTGAATAGAAAATTCACAAC+TGG - chr3_1:72656494-72656513 None:intergenic 30.0%
AAGGAAAACATACAAAAGTG+AGG - chr3_1:72656555-72656574 None:intergenic 30.0%
! TTTTTGATATCCTTGCCAAA+AGG - chr3_1:72656574-72656593 None:intergenic 30.0%
! CCCTAATCTTTTCAGAATTA+TGG + chr3_1:72656598-72656617 Msa0373590:three_prime_UTR 30.0%
AATAAAATAGGGATTCGAGT+TGG - chr3_1:72654542-72654561 None:intergenic 30.0%
AATCGAAAATGAGAGAAAAG+AGG - chr3_1:72654567-72654586 None:intergenic 30.0%
! GTGAAAGGATAGAGAAATTT+TGG - chr3_1:72654634-72654653 None:intergenic 30.0%
AGAAAAATGAGTGAAATTGG+GGG - chr3_1:72654765-72654784 None:intergenic 30.0%
! GGTTTGATTCTCTTTGTTTA+AGG + chr3_1:72654850-72654869 Msa0373590:intron 30.0%
TTTGTGAAGGTGAAGAAATA+TGG + chr3_1:72655006-72655025 Msa0373590:CDS 30.0%
AGCGGTTAAATTGGTTATAA+AGG - chr3_1:72655070-72655089 None:intergenic 30.0%
AAAGAAACAAAGTAGGGTTA+GGG - chr3_1:72655114-72655133 None:intergenic 30.0%
! TAGATTTTGCAAAGTCAATC+TGG + chr3_1:72655306-72655325 Msa0373590:intron 30.0%
! GTTGACTCAATAATTTGAGT+AGG - chr3_1:72655496-72655515 None:intergenic 30.0%
ACTCACTCTCAAATTCAATT+AGG - chr3_1:72655748-72655767 None:intergenic 30.0%
TAATTGAATTTGAGAGTGAG+TGG + chr3_1:72655747-72655766 Msa0373590:intron 30.0%
AACAGTTTAATCATCAGGAA+CGG - chr3_1:72655796-72655815 None:intergenic 30.0%
ACAAATAGCCAAATTCAACT+AGG - chr3_1:72656128-72656147 None:intergenic 30.0%
TGAATTTGGCTATTTGTTTC+AGG + chr3_1:72656131-72656150 Msa0373590:intron 30.0%
AAATTGCACCTTAGTATCAA+AGG - chr3_1:72656264-72656283 None:intergenic 30.0%
TTTGATACTAAGGTGCAATT+TGG + chr3_1:72656263-72656282 Msa0373590:intron 30.0%
!! TTGTTATTTATCGACTGACA+TGG + chr3_1:72656297-72656316 Msa0373590:intron 30.0%
GTGAATAGAAAATTCACAAC+TGG - chr3_1:72656494-72656513 None:intergenic 30.0%
AAGGAAAACATACAAAAGTG+AGG - chr3_1:72656555-72656574 None:intergenic 30.0%
! TTTTTGATATCCTTGCCAAA+AGG - chr3_1:72656574-72656593 None:intergenic 30.0%
! CCCTAATCTTTTCAGAATTA+TGG + chr3_1:72656598-72656617 Msa0373590:three_prime_UTR 30.0%
AGTTGGAAAGAAACTTGTAG+GGG - chr3_1:72654525-72654544 None:intergenic 35.0%
GAGTTGGAAAGAAACTTGTA+GGG - chr3_1:72654526-72654545 None:intergenic 35.0%
!! GTAATTTTGGTAGTTGGGAT+TGG - chr3_1:72654612-72654631 None:intergenic 35.0%
TCTATCCTTTCACTTGATCA+TGG + chr3_1:72654641-72654660 Msa0373590:exon 35.0%
ACGAAGAGTGATTATGTCTT+TGG - chr3_1:72654682-72654701 None:intergenic 35.0%
AAAGACATAATCACTCTTCG+TGG + chr3_1:72654681-72654700 Msa0373590:CDS 35.0%
!!! TTTTGTGCTATTTTCGAACC+AGG + chr3_1:72654813-72654832 Msa0373590:intron 35.0%
GATAAACACCTCGATTGTAA+AGG - chr3_1:72654975-72654994 None:intergenic 35.0%
TCATCTTCAGTAAGCAACAT+CGG - chr3_1:72655036-72655055 None:intergenic 35.0%
! ATGTTGCTTACTGAAGATGA+GGG + chr3_1:72655036-72655055 Msa0373590:CDS 35.0%
GAAAGAAACAAAGTAGGGTT+AGG - chr3_1:72655115-72655134 None:intergenic 35.0%
ACAGTTACTTATGGAGAGTT+GGG + chr3_1:72655207-72655226 Msa0373590:intron 35.0%
! GAACTTTTAAGCCCATGATT+GGG - chr3_1:72655357-72655376 None:intergenic 35.0%
! TGAACTTTTAAGCCCATGAT+TGG - chr3_1:72655358-72655377 None:intergenic 35.0%
! AAGCCTTATCCATGTAAGTT+GGG + chr3_1:72655453-72655472 Msa0373590:intron 35.0%
TAACCCAACTTACATGGATA+AGG - chr3_1:72655459-72655478 None:intergenic 35.0%
TCTACATAACCCAACTTACA+TGG - chr3_1:72655465-72655484 None:intergenic 35.0%
GCAAAAGTGAACATGTTTAC+AGG - chr3_1:72655611-72655630 None:intergenic 35.0%
! TGGACTTGCTCATTATAACA+AGG - chr3_1:72655867-72655886 None:intergenic 35.0%
ACTGCATTCCTTTGATACTA+AGG + chr3_1:72656253-72656272 Msa0373590:CDS 35.0%
TTTGGTTATGCAGATTCACA+AGG + chr3_1:72656349-72656368 Msa0373590:intron 35.0%
TATCATACAAGAACGACGAA+TGG + chr3_1:72656384-72656403 Msa0373590:CDS 35.0%
ATCATACAAGAACGACGAAT+GGG + chr3_1:72656385-72656404 Msa0373590:CDS 35.0%
AACAGAACCATGACAAGAAA+AGG - chr3_1:72656439-72656458 None:intergenic 35.0%
! TGTATGTTTTCCTTTTGGCA+AGG + chr3_1:72656561-72656580 Msa0373590:three_prime_UTR 35.0%
AGTTGGAAAGAAACTTGTAG+GGG - chr3_1:72654525-72654544 None:intergenic 35.0%
GAGTTGGAAAGAAACTTGTA+GGG - chr3_1:72654526-72654545 None:intergenic 35.0%
!! GTAATTTTGGTAGTTGGGAT+TGG - chr3_1:72654612-72654631 None:intergenic 35.0%
TCTATCCTTTCACTTGATCA+TGG + chr3_1:72654641-72654660 Msa0373590:exon 35.0%
ACGAAGAGTGATTATGTCTT+TGG - chr3_1:72654682-72654701 None:intergenic 35.0%
AAAGACATAATCACTCTTCG+TGG + chr3_1:72654681-72654700 Msa0373590:CDS 35.0%
!!! TTTTGTGCTATTTTCGAACC+AGG + chr3_1:72654813-72654832 Msa0373590:intron 35.0%
GATAAACACCTCGATTGTAA+AGG - chr3_1:72654975-72654994 None:intergenic 35.0%
TCATCTTCAGTAAGCAACAT+CGG - chr3_1:72655036-72655055 None:intergenic 35.0%
! ATGTTGCTTACTGAAGATGA+GGG + chr3_1:72655036-72655055 Msa0373590:CDS 35.0%
GAAAGAAACAAAGTAGGGTT+AGG - chr3_1:72655115-72655134 None:intergenic 35.0%
ACAGTTACTTATGGAGAGTT+GGG + chr3_1:72655207-72655226 Msa0373590:intron 35.0%
! GAACTTTTAAGCCCATGATT+GGG - chr3_1:72655357-72655376 None:intergenic 35.0%
! TGAACTTTTAAGCCCATGAT+TGG - chr3_1:72655358-72655377 None:intergenic 35.0%
! AAGCCTTATCCATGTAAGTT+GGG + chr3_1:72655453-72655472 Msa0373590:intron 35.0%
TAACCCAACTTACATGGATA+AGG - chr3_1:72655459-72655478 None:intergenic 35.0%
TCTACATAACCCAACTTACA+TGG - chr3_1:72655465-72655484 None:intergenic 35.0%
GCAAAAGTGAACATGTTTAC+AGG - chr3_1:72655611-72655630 None:intergenic 35.0%
! TGGACTTGCTCATTATAACA+AGG - chr3_1:72655867-72655886 None:intergenic 35.0%
ACTGCATTCCTTTGATACTA+AGG + chr3_1:72656253-72656272 Msa0373590:CDS 35.0%
TTTGGTTATGCAGATTCACA+AGG + chr3_1:72656349-72656368 Msa0373590:intron 35.0%
TATCATACAAGAACGACGAA+TGG + chr3_1:72656384-72656403 Msa0373590:CDS 35.0%
ATCATACAAGAACGACGAAT+GGG + chr3_1:72656385-72656404 Msa0373590:CDS 35.0%
AACAGAACCATGACAAGAAA+AGG - chr3_1:72656439-72656458 None:intergenic 35.0%
! TGTATGTTTTCCTTTTGGCA+AGG + chr3_1:72656561-72656580 Msa0373590:three_prime_UTR 35.0%
!!! TAACGGCTAGTTCTGCTTTT+TGG - chr3_1:72654494-72654513 None:intergenic 40.0%
AAAAGCAGAACTAGCCGTTA+AGG + chr3_1:72654494-72654513 Msa0373590:five_prime_UTR 40.0%
! CGAGTTGGAAAGAAACTTGT+AGG - chr3_1:72654527-72654546 None:intergenic 40.0%
TGATGCCATGATCAAGTGAA+AGG - chr3_1:72654649-72654668 None:intergenic 40.0%
TTCAGCATCCTTTACAATCG+AGG + chr3_1:72654964-72654983 Msa0373590:intron 40.0%
! TCCAGAAGAAAGCTTTGTGA+AGG + chr3_1:72654993-72655012 Msa0373590:CDS 40.0%
ACCTTCACAAAGCTTTCTTC+TGG - chr3_1:72654997-72655016 None:intergenic 40.0%
! GATGTTGCTTACTGAAGATG+AGG + chr3_1:72655035-72655054 Msa0373590:CDS 40.0%
AGAAAGCTGAGCGGTTAAAT+TGG - chr3_1:72655079-72655098 None:intergenic 40.0%
AATTTAACCGCTCAGCTTTC+TGG + chr3_1:72655078-72655097 Msa0373590:CDS 40.0%
TTAGTTACCAGAAAGCTGAG+CGG - chr3_1:72655088-72655107 None:intergenic 40.0%
! AGTGTTGGGACAGTTACTTA+TGG + chr3_1:72655198-72655217 Msa0373590:intron 40.0%
GACAGTTACTTATGGAGAGT+TGG + chr3_1:72655206-72655225 Msa0373590:intron 40.0%
ACTCATAGTGAACCCAATCA+TGG + chr3_1:72655342-72655361 Msa0373590:intron 40.0%
CTCATAGTGAACCCAATCAT+GGG + chr3_1:72655343-72655362 Msa0373590:intron 40.0%
CATGGATAAGGCTTGATTGT+TGG - chr3_1:72655447-72655466 None:intergenic 40.0%
! CAAGCCTTATCCATGTAAGT+TGG + chr3_1:72655452-72655471 Msa0373590:intron 40.0%
! GAGAGTGAGTGATTTTTCTG+AGG + chr3_1:72655674-72655693 Msa0373590:intron 40.0%
TGAAAAGAATGGCTTGAAGC+TGG + chr3_1:72655823-72655842 Msa0373590:intron 40.0%
GTTATAATGAGCAAGTCCAC+TGG + chr3_1:72655868-72655887 Msa0373590:CDS 40.0%
TGCTGAAATTCCACCTTTCA+AGG - chr3_1:72655900-72655919 None:intergenic 40.0%
GGAAATCATGAGAGAGATAC+AGG + chr3_1:72655975-72655994 Msa0373590:CDS 40.0%
TTCATCCAAGCATGGCAAAT+AGG - chr3_1:72656031-72656050 None:intergenic 40.0%
ATACAAGGTTCATCCAAGCA+TGG - chr3_1:72656039-72656058 None:intergenic 40.0%
TCAAAGAGTGACAGCATACA+AGG - chr3_1:72656054-72656073 None:intergenic 40.0%
TTCAGGTGTGTTTGATGTGT+TGG + chr3_1:72656148-72656167 Msa0373590:intron 40.0%
GGCATATACTAACACAGATG+TGG + chr3_1:72656169-72656188 Msa0373590:CDS 40.0%
ATGTGGAAGTTCCATTCACT+TGG + chr3_1:72656186-72656205 Msa0373590:CDS 40.0%
!! TGTGGATTAGCAATCAGCTT+TGG - chr3_1:72656224-72656243 None:intergenic 40.0%
GCTGATTGCTAATCCACAAA+TGG + chr3_1:72656226-72656245 Msa0373590:CDS 40.0%
GAATGCAGTTTCACCATTTG+TGG - chr3_1:72656242-72656261 None:intergenic 40.0%
GACTGACATGGTTTATCCTT+TGG + chr3_1:72656309-72656328 Msa0373590:intron 40.0%
! TGGTTAGATGTGTACTGATG+TGG + chr3_1:72656515-72656534 Msa0373590:three_prime_UTR 40.0%
!!! TAACGGCTAGTTCTGCTTTT+TGG - chr3_1:72654494-72654513 None:intergenic 40.0%
AAAAGCAGAACTAGCCGTTA+AGG + chr3_1:72654494-72654513 Msa0373590:five_prime_UTR 40.0%
! CGAGTTGGAAAGAAACTTGT+AGG - chr3_1:72654527-72654546 None:intergenic 40.0%
TGATGCCATGATCAAGTGAA+AGG - chr3_1:72654649-72654668 None:intergenic 40.0%
TTCAGCATCCTTTACAATCG+AGG + chr3_1:72654964-72654983 Msa0373590:intron 40.0%
! TCCAGAAGAAAGCTTTGTGA+AGG + chr3_1:72654993-72655012 Msa0373590:CDS 40.0%
ACCTTCACAAAGCTTTCTTC+TGG - chr3_1:72654997-72655016 None:intergenic 40.0%
! GATGTTGCTTACTGAAGATG+AGG + chr3_1:72655035-72655054 Msa0373590:CDS 40.0%
AGAAAGCTGAGCGGTTAAAT+TGG - chr3_1:72655079-72655098 None:intergenic 40.0%
AATTTAACCGCTCAGCTTTC+TGG + chr3_1:72655078-72655097 Msa0373590:CDS 40.0%
TTAGTTACCAGAAAGCTGAG+CGG - chr3_1:72655088-72655107 None:intergenic 40.0%
! AGTGTTGGGACAGTTACTTA+TGG + chr3_1:72655198-72655217 Msa0373590:intron 40.0%
GACAGTTACTTATGGAGAGT+TGG + chr3_1:72655206-72655225 Msa0373590:intron 40.0%
ACTCATAGTGAACCCAATCA+TGG + chr3_1:72655342-72655361 Msa0373590:intron 40.0%
CTCATAGTGAACCCAATCAT+GGG + chr3_1:72655343-72655362 Msa0373590:intron 40.0%
CATGGATAAGGCTTGATTGT+TGG - chr3_1:72655447-72655466 None:intergenic 40.0%
! CAAGCCTTATCCATGTAAGT+TGG + chr3_1:72655452-72655471 Msa0373590:intron 40.0%
! GAGAGTGAGTGATTTTTCTG+AGG + chr3_1:72655674-72655693 Msa0373590:intron 40.0%
TGAAAAGAATGGCTTGAAGC+TGG + chr3_1:72655823-72655842 Msa0373590:intron 40.0%
GTTATAATGAGCAAGTCCAC+TGG + chr3_1:72655868-72655887 Msa0373590:CDS 40.0%
TGCTGAAATTCCACCTTTCA+AGG - chr3_1:72655900-72655919 None:intergenic 40.0%
GGAAATCATGAGAGAGATAC+AGG + chr3_1:72655975-72655994 Msa0373590:CDS 40.0%
TTCATCCAAGCATGGCAAAT+AGG - chr3_1:72656031-72656050 None:intergenic 40.0%
ATACAAGGTTCATCCAAGCA+TGG - chr3_1:72656039-72656058 None:intergenic 40.0%
TCAAAGAGTGACAGCATACA+AGG - chr3_1:72656054-72656073 None:intergenic 40.0%
TTCAGGTGTGTTTGATGTGT+TGG + chr3_1:72656148-72656167 Msa0373590:intron 40.0%
GGCATATACTAACACAGATG+TGG + chr3_1:72656169-72656188 Msa0373590:CDS 40.0%
ATGTGGAAGTTCCATTCACT+TGG + chr3_1:72656186-72656205 Msa0373590:CDS 40.0%
!! TGTGGATTAGCAATCAGCTT+TGG - chr3_1:72656224-72656243 None:intergenic 40.0%
GCTGATTGCTAATCCACAAA+TGG + chr3_1:72656226-72656245 Msa0373590:CDS 40.0%
GAATGCAGTTTCACCATTTG+TGG - chr3_1:72656242-72656261 None:intergenic 40.0%
GACTGACATGGTTTATCCTT+TGG + chr3_1:72656309-72656328 Msa0373590:intron 40.0%
! TGGTTAGATGTGTACTGATG+TGG + chr3_1:72656515-72656534 Msa0373590:three_prime_UTR 40.0%
GCAATCGTTAGCGAGTTCTT+CGG + chr3_1:72654711-72654730 Msa0373590:CDS 45.0%
AACCAGGATATGCTGCTAAC+AGG + chr3_1:72654829-72654848 Msa0373590:intron 45.0%
AACCTGTTAGCAGCATATCC+TGG - chr3_1:72654834-72654853 None:intergenic 45.0%
CTTCAGTAAGCAACATCGGA+AGG - chr3_1:72655032-72655051 None:intergenic 45.0%
TTGAAGCTGGCAAGTTACAG+AGG + chr3_1:72655836-72655855 Msa0373590:CDS 45.0%
! CAGCATTGAGACTGATAACG+AGG + chr3_1:72655915-72655934 Msa0373590:CDS 45.0%
! TGATAACGAGGTTGTCGAGA+AGG + chr3_1:72655927-72655946 Msa0373590:CDS 45.0%
GATAACGAGGTTGTCGAGAA+GGG + chr3_1:72655928-72655947 Msa0373590:CDS 45.0%
GAGAGATACAGGCCATTATG+AGG + chr3_1:72655986-72656005 Msa0373590:CDS 45.0%
CGAAGCAATCTGCCTCATAA+TGG - chr3_1:72656001-72656020 None:intergenic 45.0%
CATCACCTATTTGCCATGCT+TGG + chr3_1:72656023-72656042 Msa0373590:CDS 45.0%
TCACTCTCAGTCCAAGTGAA+TGG - chr3_1:72656200-72656219 None:intergenic 45.0%
TGACAAGAAAAGGACACAGG+CGG - chr3_1:72656429-72656448 None:intergenic 45.0%
CCATGACAAGAAAAGGACAC+AGG - chr3_1:72656432-72656451 None:intergenic 45.0%
! CCTGTGTCCTTTTCTTGTCA+TGG + chr3_1:72656429-72656448 Msa0373590:three_prime_UTR 45.0%
CTGGCACAATCCACTTGATT+TGG - chr3_1:72656475-72656494 None:intergenic 45.0%
GCAATCGTTAGCGAGTTCTT+CGG + chr3_1:72654711-72654730 Msa0373590:CDS 45.0%
AACCAGGATATGCTGCTAAC+AGG + chr3_1:72654829-72654848 Msa0373590:intron 45.0%
AACCTGTTAGCAGCATATCC+TGG - chr3_1:72654834-72654853 None:intergenic 45.0%
CTTCAGTAAGCAACATCGGA+AGG - chr3_1:72655032-72655051 None:intergenic 45.0%
TTGAAGCTGGCAAGTTACAG+AGG + chr3_1:72655836-72655855 Msa0373590:CDS 45.0%
! CAGCATTGAGACTGATAACG+AGG + chr3_1:72655915-72655934 Msa0373590:CDS 45.0%
! TGATAACGAGGTTGTCGAGA+AGG + chr3_1:72655927-72655946 Msa0373590:CDS 45.0%
GATAACGAGGTTGTCGAGAA+GGG + chr3_1:72655928-72655947 Msa0373590:CDS 45.0%
GAGAGATACAGGCCATTATG+AGG + chr3_1:72655986-72656005 Msa0373590:CDS 45.0%
CGAAGCAATCTGCCTCATAA+TGG - chr3_1:72656001-72656020 None:intergenic 45.0%
CATCACCTATTTGCCATGCT+TGG + chr3_1:72656023-72656042 Msa0373590:CDS 45.0%
TCACTCTCAGTCCAAGTGAA+TGG - chr3_1:72656200-72656219 None:intergenic 45.0%
TGACAAGAAAAGGACACAGG+CGG - chr3_1:72656429-72656448 None:intergenic 45.0%
CCATGACAAGAAAAGGACAC+AGG - chr3_1:72656432-72656451 None:intergenic 45.0%
! CCTGTGTCCTTTTCTTGTCA+TGG + chr3_1:72656429-72656448 Msa0373590:three_prime_UTR 45.0%
CTGGCACAATCCACTTGATT+TGG - chr3_1:72656475-72656494 None:intergenic 45.0%
!! TTGTAGGGGAAGCGCCTTAA+CGG - chr3_1:72654511-72654530 None:intergenic 50.0%
CCTTTCAAGGACTTCACCAG+TGG - chr3_1:72655887-72655906 None:intergenic 50.0%
CCACTGGTGAAGTCCTTGAA+AGG + chr3_1:72655884-72655903 Msa0373590:CDS 50.0%
CTGGTGAAGTCCTTGAAAGG+TGG + chr3_1:72655887-72655906 Msa0373590:CDS 50.0%
GTCAAGGGAGAAGAGTGACA+AGG + chr3_1:72655954-72655973 Msa0373590:CDS 50.0%
!! TTGTAGGGGAAGCGCCTTAA+CGG - chr3_1:72654511-72654530 None:intergenic 50.0%
CCTTTCAAGGACTTCACCAG+TGG - chr3_1:72655887-72655906 None:intergenic 50.0%
CCACTGGTGAAGTCCTTGAA+AGG + chr3_1:72655884-72655903 Msa0373590:CDS 50.0%
CTGGTGAAGTCCTTGAAAGG+TGG + chr3_1:72655887-72655906 Msa0373590:CDS 50.0%
GTCAAGGGAGAAGAGTGACA+AGG + chr3_1:72655954-72655973 Msa0373590:CDS 50.0%
TTGTCGAGAAGGGCGAGTCA+AGG + chr3_1:72655938-72655957 Msa0373590:CDS 55.0%
TGTCGAGAAGGGCGAGTCAA+GGG + chr3_1:72655939-72655958 Msa0373590:CDS 55.0%
TTGTCGAGAAGGGCGAGTCA+AGG + chr3_1:72655938-72655957 Msa0373590:CDS 55.0%
TGTCGAGAAGGGCGAGTCAA+GGG + chr3_1:72655939-72655958 Msa0373590:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72654485 72656691 72654485 ID=Msa0373590;Name=Msa0373590
chr3_1 mRNA 72654485 72656691 72654485 ID=Msa0373590-mRNA-1;Parent=Msa0373590;Name=Msa0373590-mRNA-1;_AED=0.19;_eAED=0.19;_QI=175|1|1|1|1|1|6|273|207
chr3_1 exon 72654485 72654732 72654485 ID=Msa0373590-mRNA-1:exon:16338;Parent=Msa0373590-mRNA-1
chr3_1 exon 72654835 72654850 72654835 ID=Msa0373590-mRNA-1:exon:16339;Parent=Msa0373590-mRNA-1
chr3_1 exon 72654969 72655099 72654969 ID=Msa0373590-mRNA-1:exon:16340;Parent=Msa0373590-mRNA-1
chr3_1 exon 72655830 72656054 72655830 ID=Msa0373590-mRNA-1:exon:16341;Parent=Msa0373590-mRNA-1
chr3_1 exon 72656153 72656274 72656153 ID=Msa0373590-mRNA-1:exon:16342;Parent=Msa0373590-mRNA-1
chr3_1 exon 72656362 72656691 72656362 ID=Msa0373590-mRNA-1:exon:16343;Parent=Msa0373590-mRNA-1
chr3_1 five_prime_UTR 72654485 72654659 72654485 ID=Msa0373590-mRNA-1:five_prime_utr;Parent=Msa0373590-mRNA-1
chr3_1 CDS 72654660 72654732 72654660 ID=Msa0373590-mRNA-1:cds;Parent=Msa0373590-mRNA-1
chr3_1 CDS 72654835 72654850 72654835 ID=Msa0373590-mRNA-1:cds;Parent=Msa0373590-mRNA-1
chr3_1 CDS 72654969 72655099 72654969 ID=Msa0373590-mRNA-1:cds;Parent=Msa0373590-mRNA-1
chr3_1 CDS 72655830 72656054 72655830 ID=Msa0373590-mRNA-1:cds;Parent=Msa0373590-mRNA-1
chr3_1 CDS 72656153 72656274 72656153 ID=Msa0373590-mRNA-1:cds;Parent=Msa0373590-mRNA-1
chr3_1 CDS 72656362 72656418 72656362 ID=Msa0373590-mRNA-1:cds;Parent=Msa0373590-mRNA-1
chr3_1 three_prime_UTR 72656419 72656691 72656419 ID=Msa0373590-mRNA-1:three_prime_utr;Parent=Msa0373590-mRNA-1
Gene Sequence

>Msa0373590

ATGGCATCAAAAACAGTTACCAAAGACATAATCACTCTTCGTGGTTCTGCAGCAATCGTTAGCGAGTTCTTCGGATATGCTGCTAACAGCATCCTTTACAATCGAGGTGTTTATCCAGAAGAAAGCTTTGTGAAGGTGAAGAAATATGGCCTTCCGATGTTGCTTACTGAAGATGAGGGTGTTAAGTCCTTTATAACCAATTTAACCGCTCAGCTTTCTGAATGGCTTGAAGCTGGCAAGTTACAGAGGATTGTCCTTGTTATAATGAGCAAGTCCACTGGTGAAGTCCTTGAAAGGTGGAATTTCAGCATTGAGACTGATAACGAGGTTGTCGAGAAGGGCGAGTCAAGGGAGAAGAGTGACAAGGAAATCATGAGAGAGATACAGGCCATTATGAGGCAGATTGCTTCGAGCATCACCTATTTGCCATGCTTGGATGAACCTTGTGTGTTTGATGTGTTGGCATATACTAACACAGATGTGGAAGTTCCATTCACTTGGACTGAGAGTGATCCAAAGCTGATTGCTAATCCACAAATGGTGAAACTGCATTCCTTTGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAACGACGAATGGGATGAGCAGTAA

Protein sequence

>Msa0373590

MASKTVTKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFITNLTAQLSEWLEAGKLQRIVLVIMSKSTGEVLERWNFSIETDNEVVEKGESREKSDKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTNTDVEVPFTWTESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ*