AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381730 MtrunA17_Chr3g0135851 98.652 445 6 0 1 445 1 445 0.0 907
Msa0381730 MtrunA17_Chr8g0342551 44.091 440 218 10 1 432 1 420 8.49e-76 243
Msa0381730 MtrunA17_Chr2g0330051 44.548 431 189 13 1 427 1 385 3.84e-73 235
Msa0381730 MtrunA17_Chr4g0025441 47.122 278 124 6 1 268 1 265 4.95e-58 197
Msa0381730 MtrunA17_Chr6g0462191 39.016 305 151 11 89 380 105 387 2.84e-42 154
Msa0381730 MtrunA17_Chr1g0200161 43.503 177 90 4 90 263 140 309 1.35e-37 143
Msa0381730 MtrunA17_Chr8g0346021 44.041 193 80 5 89 265 125 305 1.11e-36 141
Msa0381730 MtrunA17_Chr7g0263731 42.478 226 106 7 50 265 64 275 2.27e-35 136
Msa0381730 MtrunA17_Chr1g0181581 44.503 191 86 6 72 259 103 276 8.30e-35 135
Msa0381730 MtrunA17_Chr2g0283321 35.600 250 122 8 93 332 65 285 1.07e-32 125
Msa0381730 MtrunA17_Chr2g0316401 35.514 214 127 6 58 270 42 245 4.83e-32 124
Msa0381730 MtrunA17_Chr4g0045641 30.114 352 207 12 56 386 112 445 1.77e-30 123
Msa0381730 MtrunA17_Chr4g0020671 31.466 232 131 5 50 276 60 268 1.38e-28 117
Msa0381730 MtrunA17_Chr1g0146931 39.604 202 101 3 86 267 117 317 1.12e-25 109
Msa0381730 MtrunA17_Chr1g0204901 49.524 105 51 1 90 192 135 239 3.63e-24 104
Msa0381730 MtrunA17_Chr7g0273861 29.947 187 108 3 86 268 120 287 2.49e-21 95.9
Msa0381730 MtrunA17_Chr8g0340761 62.162 74 28 0 85 158 120 193 3.75e-21 95.1
Msa0381730 MtrunA17_Chr3g0126901 38.947 190 108 4 91 279 112 294 6.26e-21 94.7
Msa0381730 MtrunA17_Chr8g0371131 40.000 140 74 3 28 159 2 139 9.95e-21 88.2
Msa0381730 MtrunA17_Chr6g0472551 56.098 82 36 0 86 167 112 193 9.17e-20 91.3
Msa0381730 MtrunA17_Chr8g0389781 63.636 66 24 0 90 155 125 190 1.18e-19 90.9
Msa0381730 MtrunA17_Chr2g0330921 36.628 172 89 5 1 159 1 165 1.43e-18 86.7
Msa0381730 MtrunA17_Chr1g0203711 58.571 70 29 0 90 159 114 183 1.55e-18 87.4
Msa0381730 MtrunA17_Chr4g0060381 33.158 190 97 5 74 262 83 243 4.43e-18 86.7
Msa0381730 MtrunA17_Chr4g0057321 33.511 188 99 6 1 180 1 170 1.22e-17 84.7
Msa0381730 MtrunA17_Chr7g0273951 56.716 67 29 0 93 159 108 174 1.60e-17 84.0
Msa0381730 MtrunA17_Chr1g0166431 47.222 108 52 1 90 192 116 223 4.24e-17 83.2
Msa0381730 MtrunA17_Chr5g0416161 36.290 124 63 3 69 191 99 207 5.59e-13 71.2
Msa0381730 MtrunA17_Chr1g0172611 32.847 137 81 2 93 220 107 241 5.96e-13 70.1
Msa0381730 MtrunA17_Chr1g0156121 49.254 67 34 0 91 157 124 190 1.06e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381730 AT2G26180.1 59.502 442 147 12 1 439 1 413 3.92e-149 431
Msa0381730 AT1G72670.1 45.618 445 189 14 1 436 1 401 1.96e-94 291
Msa0381730 AT1G17480.1 37.277 448 196 14 1 440 1 371 1.66e-65 215
Msa0381730 AT3G22190.3 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0381730 AT3G22190.2 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0381730 AT3G22190.4 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0381730 AT3G22190.1 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0381730 AT5G03040.1 43.627 204 105 4 71 272 94 289 4.07e-41 152
Msa0381730 AT5G03040.3 43.627 204 105 4 71 272 94 289 4.07e-41 152
Msa0381730 AT5G03040.2 43.627 204 105 4 71 272 94 289 4.07e-41 152
Msa0381730 AT4G00820.1 33.668 398 180 15 89 443 130 486 1.42e-37 144
Msa0381730 AT1G01110.2 31.159 414 228 12 14 385 44 442 2.29e-36 140
Msa0381730 AT3G52290.1 39.674 184 102 2 90 273 107 281 3.91e-35 135
Msa0381730 AT3G15050.1 38.496 226 110 8 91 315 50 247 1.02e-32 125
Msa0381730 AT3G09710.1 38.839 224 108 7 64 269 67 279 1.35e-32 129
Msa0381730 AT3G49260.3 40.513 195 93 4 86 265 115 301 1.94e-32 129
Msa0381730 AT3G49260.1 40.000 195 93 4 86 265 115 300 2.20e-32 128
Msa0381730 AT3G49260.4 40.000 195 93 4 86 265 115 300 2.20e-32 128
Msa0381730 AT3G49260.2 40.000 195 93 4 86 265 115 300 2.20e-32 128
Msa0381730 AT3G09710.2 36.709 237 109 8 64 269 67 293 4.05e-31 125
Msa0381730 AT2G33990.1 37.853 177 99 4 90 265 46 212 1.21e-29 116
Msa0381730 AT4G10640.1 31.864 295 154 9 15 278 22 300 4.70e-27 112
Msa0381730 AT2G26410.2 35.028 177 106 4 89 263 146 315 1.84e-25 109
Msa0381730 AT2G26410.1 35.028 177 106 4 89 263 146 315 1.84e-25 109
Msa0381730 AT5G13460.1 31.897 232 120 8 58 284 86 284 6.25e-23 101
Msa0381730 AT2G43680.4 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0381730 AT2G43680.2 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0381730 AT2G43680.3 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0381730 AT2G43680.5 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0381730 AT2G43680.1 32.402 179 102 5 77 255 312 471 1.25e-21 98.2
Msa0381730 AT4G14750.1 30.802 237 143 7 1 221 1 232 1.98e-21 95.9
Msa0381730 AT4G14750.3 30.802 237 143 7 1 221 60 291 3.71e-21 95.9
Msa0381730 AT4G14750.2 30.802 237 143 7 1 221 60 291 4.44e-21 95.5
Msa0381730 AT3G59690.2 34.641 153 92 4 81 231 160 306 7.97e-21 95.5
Msa0381730 AT3G59690.1 34.641 153 92 4 81 231 160 306 7.97e-21 95.5
Msa0381730 AT1G51960.1 33.173 208 117 7 1 198 1 196 8.00e-19 87.8
Msa0381730 AT4G23060.1 57.333 75 32 0 91 165 167 241 2.02e-18 87.8
Msa0381730 AT3G16490.1 49.451 91 38 2 90 180 106 188 2.86e-18 86.7
Msa0381730 AT1G18840.1 48.052 77 40 0 88 164 106 182 7.35e-18 86.7
Msa0381730 AT1G18840.3 48.052 77 40 0 88 164 106 182 7.35e-18 86.7
Msa0381730 AT1G18840.2 48.052 77 40 0 88 164 106 182 7.35e-18 86.7
Msa0381730 AT5G07240.1 66.667 63 20 1 90 151 104 166 2.49e-17 84.0
Msa0381730 AT5G07240.2 66.667 63 20 1 90 151 150 212 2.89e-17 84.3
Msa0381730 AT3G51380.1 57.812 64 27 0 89 152 35 98 8.47e-16 73.6
Msa0381730 AT1G14380.6 35.928 167 90 5 1 157 1 160 1.13e-15 79.7
Msa0381730 AT1G14380.5 35.928 167 90 5 1 157 1 160 1.13e-15 79.7
Msa0381730 AT1G14380.2 35.928 167 90 5 1 157 1 160 1.13e-15 79.7
Msa0381730 AT1G14380.7 35.928 167 90 5 1 157 1 160 1.22e-15 79.7
Msa0381730 AT1G74690.1 39.316 117 66 1 62 178 84 195 1.27e-15 79.7
Msa0381730 AT4G29150.1 61.538 65 25 0 89 153 129 193 1.28e-15 79.0
Msa0381730 AT1G14380.1 35.928 167 90 5 1 157 1 160 1.32e-15 79.7
Msa0381730 AT1G14380.3 35.928 167 90 5 1 157 1 160 1.32e-15 79.7
Msa0381730 AT1G14380.4 35.928 167 90 5 1 157 1 160 1.32e-15 79.7
Msa0381730 AT5G03960.3 37.956 137 74 2 93 222 110 242 7.04e-15 76.6
Msa0381730 AT5G03960.2 37.956 137 74 2 93 222 110 242 7.04e-15 76.6
Msa0381730 AT5G03960.1 37.956 137 74 2 93 222 109 241 7.33e-15 76.6
Msa0381730 AT1G01110.1 28.125 288 162 9 134 385 1 279 1.28e-14 75.5
Msa0381730 AT5G62070.1 61.667 60 23 0 86 145 112 171 2.21e-14 75.1
Msa0381730 AT3G49380.1 38.235 136 67 4 19 147 41 166 3.23e-14 74.3
Msa0381730 AT1G19870.1 35.938 128 60 3 47 152 149 276 4.33e-13 72.0
Msa0381730 AT1G19870.2 53.226 62 29 0 91 152 32 93 1.89e-12 69.7
Msa0381730 AT2G02790.2 41.892 74 43 0 84 157 100 173 9.81e-11 64.3
Msa0381730 AT2G02790.3 41.892 74 43 0 84 157 100 173 9.81e-11 64.3

Find 166 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGACGAATTGTCAATTTA+TGG 0.120322 3_1:-83949238 Msa0381730:three_prime_UTR
TCATGGGTGCTTCTGGAAAA+TGG 0.162318 3_1:-83951627 Msa0381730:CDS
TTATTTCTAATAGTAATTTA+TGG 0.163021 3_1:-83949041 Msa0381730:three_prime_UTR
TGTTATACAACATGATTATT+TGG 0.179043 3_1:-83949082 Msa0381730:three_prime_UTR
CAACAAGATGTTGAACTTCT+TGG 0.237700 3_1:+83949405 None:intergenic
AACGAGTAGCTTGTCCAATA+TGG 0.247199 3_1:+83949848 None:intergenic
CGGTGAGACCATGGTGAAAA+AGG 0.254663 3_1:-83949477 Msa0381730:exon
AAGGGTTCTGCAAATTTCTT+TGG 0.258449 3_1:+83949952 None:intergenic
GTTTCGGCATTCACCTGATA+TGG 0.260918 3_1:+83948696 Msa0381720:CDS
TGAGTCAGGTTCATGTAATT+TGG 0.262145 3_1:+83949697 None:intergenic
GCAACACTCATGGGTGCTTC+TGG 0.264318 3_1:-83951634 Msa0381730:exon
TCTAAAGGGCTTTCCATATC+AGG 0.269204 3_1:-83948709 Msa0381730:three_prime_UTR
AACCACTTTCCGCGCCTTCT+TGG 0.292272 3_1:-83951239 Msa0381730:intron
CCATGAGTGTTGCTGAGTTT+TGG 0.299452 3_1:+83951644 None:intergenic
CTTTGTTCATCTCGTGATTC+CGG 0.304293 3_1:+83950085 None:intergenic
CCTTATGCTTTCATACCATT+TGG 0.309982 3_1:+83948589 Msa0381720:CDS
AGCAAGCTGCAGTGACATTA+AGG 0.326388 3_1:-83950805 Msa0381730:CDS
TCTCACCATTAGATGATATA+TGG 0.337909 3_1:-83948949 Msa0381730:three_prime_UTR
CTCAACCTGGAGAGATTATC+TGG 0.341877 3_1:-83949257 Msa0381730:three_prime_UTR
TGGACGAATTGTCAATTTAT+GGG 0.347242 3_1:-83949237 Msa0381730:three_prime_UTR
TGTCTTGTGCATCATAGAAT+TGG 0.353917 3_1:+83949018 None:intergenic
AGCCCTTTAGAACTCGAATA+TGG 0.355019 3_1:+83948721 Msa0381720:CDS
TATACAGAAAATACTTGTTT+CGG 0.356055 3_1:+83948680 Msa0381720:CDS
GCTAAGCCTCCTCCCCATAT+TGG 0.363494 3_1:-83949862 Msa0381730:CDS
AACCAAGGCAAAGCTAAAAT+CGG 0.368576 3_1:-83949671 Msa0381730:CDS
AATTGTTCATTTGTGAGTAT+TGG 0.372492 3_1:-83949285 Msa0381730:three_prime_UTR
TTGCCTTGGTTGATTGAGTC+AGG 0.373865 3_1:+83949683 None:intergenic
GGTGAGATTTATTGATTCAA+TGG 0.373983 3_1:+83948965 None:intergenic
ACATGTTGTTCATCTTTGTC+TGG 0.374417 3_1:+83951577 None:intergenic
AATTTCTTTGGAGGTGGCGG+TGG 0.375706 3_1:+83949964 None:intergenic
GCTTTCATACCATTTGGAAT+TGG 0.378600 3_1:+83948595 Msa0381720:CDS
AGAGAAAGAGAAGGGTTCGT+GGG 0.379570 3_1:+83951773 None:intergenic
CCAAATGGTATGAAAGCATA+AGG 0.390674 3_1:-83948589 Msa0381730:three_prime_UTR
CACCGAGCTCTTGTCCGATT+GGG 0.391424 3_1:+83949495 None:intergenic
TGAGGATTCAAGCACTTGTC+AGG 0.392686 3_1:-83950844 Msa0381730:CDS
CACGAGATGAACAAAGCTAA+TGG 0.399444 3_1:-83950078 Msa0381730:CDS
AGAAGGCGCGGAAAGTGGTT+TGG 0.400404 3_1:+83951242 None:intergenic
ACGAGATGAACAAAGCTAAT+GGG 0.406154 3_1:-83950077 Msa0381730:CDS
CAAGTCCAAGTTCCGAGTTT+CGG 0.408556 3_1:-83949819 Msa0381730:CDS
ACCCTTCAGAAGCTGCTTTG+TGG 0.408756 3_1:+83951374 None:intergenic
GCCTTGGGAGACTAGATTGA+TGG 0.409779 3_1:-83950019 Msa0381730:CDS
GATGGAGTTGGTTGGAAAGA+TGG 0.411885 3_1:-83950053 Msa0381730:CDS
CTAACAAGTCTAAAATCCTT+AGG 0.416040 3_1:+83951289 None:intergenic
TTCCATATTCGAGTTCTAAA+GGG 0.417925 3_1:-83948723 Msa0381730:three_prime_UTR
TGAAAGCTTGATCTCTTGTA+TGG 0.419879 3_1:-83948647 Msa0381730:three_prime_UTR
ATTCCATATTCGAGTTCTAA+AGG 0.422142 3_1:-83948724 Msa0381730:three_prime_UTR
TCGTACCGAAACTCGGAACT+TGG 0.431873 3_1:+83949814 None:intergenic
TCACCGAGCTCTTGTCCGAT+TGG 0.433938 3_1:+83949494 None:intergenic
CATGGGTGCTTCTGGAAAAT+GGG 0.436014 3_1:-83951626 Msa0381730:CDS
TTCAAATTTGAGCTTACAAA+GGG 0.438511 3_1:+83949934 None:intergenic
AAATGGGTCAAAGCATTAAT+CGG 0.439295 3_1:-83951610 Msa0381730:CDS
GAGAGAAAGAGAAGGGTTCG+TGG 0.444055 3_1:+83951772 None:intergenic
CAAATGAACAATTATACAAA+TGG 0.444321 3_1:+83949295 None:intergenic
AAGGGCTTTGAGGGCATTGA+AGG 0.446119 3_1:-83950873 Msa0381730:CDS
ATTTCTTTGGAGGTGGCGGT+GGG 0.446397 3_1:+83949965 None:intergenic
TCACACCATATATCATCTAA+TGG 0.448162 3_1:+83948944 None:intergenic
ACGAGTAGCTTGTCCAATAT+GGG 0.450987 3_1:+83949849 None:intergenic
TTAGACTTGTTAGGCAAGAA+TGG 0.452196 3_1:-83951279 Msa0381730:CDS
AGCTCAAAGGCAACAGTCAA+TGG 0.457003 3_1:-83949626 Msa0381730:CDS
TAGACTTGTTAGGCAAGAAT+GGG 0.462512 3_1:-83951278 Msa0381730:CDS
GGTTCTGCAAATTTCTTTGG+AGG 0.465140 3_1:+83949955 None:intergenic
TGCAGGCAAGAAGGGCTTTG+AGG 0.465225 3_1:-83950883 Msa0381730:intron
TTTGAGATTTCCAGCAATGC+AGG 0.466329 3_1:-83950155 Msa0381730:intron
GATGGATGGCAGCCAAGCCT+TGG 0.468070 3_1:-83950035 Msa0381730:CDS
CATCAGGAGATAACAGTTCA+TGG 0.470128 3_1:-83951417 Msa0381730:CDS
GCAGGCAAGAAGGGCTTTGA+GGG 0.472599 3_1:-83950882 Msa0381730:intron
TCTGCAAATTTCTTTGGAGG+TGG 0.475452 3_1:+83949958 None:intergenic
TCGTCGTGTGAGGATGTCTA+TGG 0.489827 3_1:-83950741 Msa0381730:CDS
GAGAAAGAGAAGGGTTCGTG+GGG 0.490414 3_1:+83951774 None:intergenic
ACATCCACAACTCCAATGTC+AGG 0.493112 3_1:-83949763 Msa0381730:CDS
GGTGTGACTTATTCATTCAA+TGG 0.499281 3_1:-83948928 Msa0381730:three_prime_UTR
CTTCAGAAGCTGCTTTGTGG+TGG 0.503461 3_1:+83951377 None:intergenic
CGCGAATTAGTGCTTGAGGT+TGG 0.505381 3_1:+83950132 None:intergenic
TGAGTTTCAATTTATGAAGA+GGG 0.508341 3_1:-83949602 Msa0381730:CDS
GCAAATTTCTTTGGAGGTGG+CGG 0.508534 3_1:+83949961 None:intergenic
AGAGGATGAAATATAAACTT+AGG 0.508574 3_1:+83948847 None:intergenic
TGTTTGAAGGTGAAGGAGGG+TGG 0.510225 3_1:-83951472 Msa0381730:intron
AAGTAGAGAGAGAAAGAGAA+GGG 0.511516 3_1:+83951765 None:intergenic
ATGGATGGCAGCCAAGCCTT+GGG 0.511965 3_1:-83950034 Msa0381730:CDS
AGGTTATGGAGAAGTTCATC+AGG 0.515436 3_1:-83951433 Msa0381730:CDS
GTCCTTGATGTTACTTGTGA+AGG 0.518061 3_1:-83949324 Msa0381730:three_prime_UTR
TGACACCATGCTTGAAGTTG+AGG 0.519275 3_1:-83948750 Msa0381730:three_prime_UTR
AAAATTCAAATGAGGCAAGA+AGG 0.523644 3_1:-83950522 Msa0381730:CDS
TGCATACTCACTTGCTCAGA+AGG 0.524622 3_1:-83950475 Msa0381730:intron
ACCAAGGCAAAGCTAAAATC+GGG 0.526058 3_1:-83949670 Msa0381730:CDS
TCACAAGTGTTCCCTGACAT+TGG 0.528516 3_1:+83949751 None:intergenic
CCAAAACTCAGCAACACTCA+TGG 0.532255 3_1:-83951644 Msa0381730:exon
GGTTATGAGTGCAGGCAAGA+AGG 0.532390 3_1:-83950892 Msa0381730:intron
CGTTGTTAGAGCTCAACCTA+AGG 0.533918 3_1:-83951305 Msa0381730:CDS
GTTATGAGTGCAGGCAAGAA+GGG 0.535330 3_1:-83950891 Msa0381730:intron
ACTCTCATCGTACCGAAACT+CGG 0.535615 3_1:+83949807 None:intergenic
TTCATTAAGCATATTCTGCA+CGG 0.537002 3_1:+83950709 None:intergenic
TACCAAGAAGGCGCGGAAAG+TGG 0.545045 3_1:+83951237 None:intergenic
ACTTCACCTACCAACCCAAT+CGG 0.545649 3_1:-83949509 Msa0381730:CDS
CAATCTAGTCTCCCAAGGCT+TGG 0.546403 3_1:+83950023 None:intergenic
CTCAAATTTGAAACCATGCT+CGG 0.547308 3_1:-83949923 Msa0381730:CDS
CACCACAAAGCAGCTTCTGA+AGG 0.550489 3_1:-83951376 Msa0381730:CDS
CAAATGGTATGAAAGCATAA+GGG 0.551950 3_1:-83948588 Msa0381730:three_prime_UTR
GTGTAAGCTTCTGCAGCAGT+TGG 0.555988 3_1:+83951343 None:intergenic
TTCGTCCAGATAATCTCTCC+AGG 0.556575 3_1:+83949252 None:intergenic
GAAGTAGAGAGAGAAAGAGA+AGG 0.558166 3_1:+83951764 None:intergenic
TTTGAGGGCATTGAAGGCAG+TGG 0.558218 3_1:-83950867 Msa0381730:CDS
AGGAGATAACAGTTCATGGA+AGG 0.563394 3_1:-83951413 Msa0381730:CDS
GAAAGAGAAGGGTTCGTGGG+GGG 0.563981 3_1:+83951776 None:intergenic
ACTTATACTTTGAGAGTCAG+AGG 0.565119 3_1:+83948829 None:intergenic
GCTCTAGGACCAATTCCAAA+TGG 0.565328 3_1:-83948604 Msa0381730:three_prime_UTR
TCCTTGATGTTACTTGTGAA+GGG 0.565990 3_1:-83949323 Msa0381730:three_prime_UTR
TTTCAAATTTGAGCTTACAA+AGG 0.566752 3_1:+83949933 None:intergenic
TTATGTTTGAAGGTGAAGGA+GGG 0.568504 3_1:-83951475 Msa0381730:intron
ATGAGTTTCAATTTATGAAG+AGG 0.569955 3_1:-83949603 Msa0381730:CDS
CGAGATGAACAAAGCTAATG+GGG 0.570107 3_1:-83950076 Msa0381730:CDS
GAGAGTGGAAAATGAGGTGT+TGG 0.571769 3_1:+83950107 None:intergenic
CAAAACTCAGCAACACTCAT+GGG 0.571912 3_1:-83951643 Msa0381730:exon
AGAAAGAGAAGGGTTCGTGG+GGG 0.574053 3_1:+83951775 None:intergenic
GAGCTCTTGTCCGATTGGGT+TGG 0.575108 3_1:+83949499 None:intergenic
AGTATTGGTAATACTCAACC+TGG 0.575609 3_1:-83949270 Msa0381730:three_prime_UTR
GAGTAAGAGCTCGTCGTGTG+AGG 0.575741 3_1:-83950751 Msa0381730:CDS
GTTCCCTGACATTGGAGTTG+TGG 0.575976 3_1:+83949759 None:intergenic
GCTTGTCCAATATGGGGAGG+AGG 0.576470 3_1:+83949856 None:intergenic
TCTTGTCCGATTGGGTTGGT+AGG 0.578767 3_1:+83949503 None:intergenic
AGTGACATTAAGGTGCATGC+AGG 0.581722 3_1:-83950795 Msa0381730:CDS
AGGATAGTTGTAACAGCACT+AGG 0.582943 3_1:-83949720 Msa0381730:CDS
TCGTGTGAGGATGTCTATGG+AGG 0.584361 3_1:-83950738 Msa0381730:CDS
TTCTGACCAATGCAAGCTCT+AGG 0.584781 3_1:-83948619 Msa0381730:three_prime_UTR
GATTGGGTTGGTAGGTGAAG+TGG 0.587150 3_1:+83949511 None:intergenic
CATCTCGTGATTCCGGAGAG+TGG 0.591885 3_1:+83950092 None:intergenic
GTGTGATAGCATAGGAACAT+TGG 0.592155 3_1:-83950559 Msa0381730:CDS
AATATGGGGAGGAGGCTTAG+CGG 0.592945 3_1:+83949864 None:intergenic
TCCCTTCACAAGTAACATCA+AGG 0.592979 3_1:+83949322 None:intergenic
AACCCAATCGGACAAGAGCT+CGG 0.593120 3_1:-83949497 Msa0381730:CDS
GAGGATTCAAGCACTTGTCA+GGG 0.594722 3_1:-83950843 Msa0381730:CDS
TTTCTTTGGAGGTGGCGGTG+GGG 0.595890 3_1:+83949966 None:intergenic
ATTGGTCCTAGAGCTTGCAT+TGG 0.600573 3_1:+83948613 Msa0381720:CDS
TTTATGTTTGAAGGTGAAGG+AGG 0.601205 3_1:-83951476 Msa0381730:intron
ATGAACAATTATACAAATGG+AGG 0.601507 3_1:+83949298 None:intergenic
ACCACAAAGCAGCTTCTGAA+GGG 0.605684 3_1:-83951375 Msa0381730:CDS
AGGAGCTTTCAAAAGAGAGA+GGG 0.607085 3_1:-83950502 Msa0381730:CDS
GGAGATAACAGTTCATGGAA+GGG 0.611321 3_1:-83951412 Msa0381730:CDS
AGTGCTGTTACAACTATCCT+CGG 0.615531 3_1:+83949723 None:intergenic
GAAGGGTGGTGTGATAGCAT+AGG 0.616172 3_1:-83950567 Msa0381730:CDS
ACAAGAGCTCGGTGAGACCA+TGG 0.619435 3_1:-83949486 Msa0381730:CDS
TCCATCAATCTAGTCTCCCA+AGG 0.620091 3_1:+83950018 None:intergenic
AGAAGCTTACACTGCTGCTG+TGG 0.620813 3_1:-83951332 Msa0381730:CDS
AAGGAGCTTTCAAAAGAGAG+AGG 0.623020 3_1:-83950503 Msa0381730:CDS
GGGCATTGAAGGCAGTGGTG+AGG 0.626128 3_1:-83950862 Msa0381730:CDS
ATAGTCCTCAACTTCAAGCA+TGG 0.629476 3_1:+83948745 Msa0381720:CDS
ATTCCGGAGAGTGGAAAATG+AGG 0.631071 3_1:+83950101 None:intergenic
CGAGTAGCTTGTCCAATATG+GGG 0.633366 3_1:+83949850 None:intergenic
CGTGTGAGGATGTCTATGGA+GGG 0.633588 3_1:-83950737 Msa0381730:CDS
GAGTTGGTTGGAAAGATGGA+TGG 0.634715 3_1:-83950049 Msa0381730:CDS
TGTCAGGGAACACTTGTGAA+AGG 0.634990 3_1:-83949747 Msa0381730:CDS
GGTTCGCGAATTAGTGCTTG+AGG 0.643363 3_1:+83950128 None:intergenic
AAATGTATAACAGAGCTCAA+AGG 0.643845 3_1:-83949639 Msa0381730:CDS
TTGTGAATCTGCAGGAAGGG+TGG 0.652606 3_1:-83950581 Msa0381730:intron
AAAGGGAAATAGCGGCTGGG+TGG 0.656150 3_1:-83949459 Msa0381730:three_prime_UTR
CATCCACAACTCCAATGTCA+GGG 0.657914 3_1:-83949762 Msa0381730:CDS
CTTAGGTTGAGCTCTAACAA+CGG 0.664616 3_1:+83951306 None:intergenic
GAAAGAGAGACACTTGTGCA+TGG 0.671235 3_1:-83948904 Msa0381730:three_prime_UTR
AATTGAATACCAAGAAGGCG+CGG 0.680101 3_1:+83951230 None:intergenic
AGGATTCAAGCACTTGTCAG+GGG 0.684889 3_1:-83950842 Msa0381730:CDS
TTGTCAGGGGTAGACAAGTG+AGG 0.688660 3_1:-83950829 Msa0381730:CDS
GTAGCTTGTCCAATATGGGG+AGG 0.689343 3_1:+83949853 None:intergenic
GAACCTGACTCAATCAACCA+AGG 0.696026 3_1:-83949686 Msa0381730:CDS
AAAAGAACAATGTCACAACA+AGG 0.709510 3_1:-83949891 Msa0381730:CDS
GAGATGAACAAAGCTAATGG+GGG 0.721370 3_1:-83950075 Msa0381730:CDS
GAACACTTGTGAAAGGACCG+AGG 0.744801 3_1:-83949740 Msa0381730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAAAAAAACATTAAAT+GGG + chr3_1:83949291-83949310 None:intergenic 10.0%
!! TAAACTAAAAAAACATTAAA+TGG + chr3_1:83949292-83949311 None:intergenic 10.0%
!! TTAAAAAATAACAAATTTGA+GGG + chr3_1:83949975-83949994 None:intergenic 10.0%
!! ATTAAAAAATAACAAATTTG+AGG + chr3_1:83949976-83949995 None:intergenic 10.0%
!!! TTATTTCTAATAGTAATTTA+TGG - chr3_1:83951326-83951345 Msa0381730:CDS 10.0%
!!! AAAAAACAAACTTTTTTTGT+GGG + chr3_1:83948849-83948868 None:intergenic 15.0%
!!! AAAAAAACAAACTTTTTTTG+TGG + chr3_1:83948850-83948869 None:intergenic 15.0%
!!! AATGTTTTTTTAGTTTAGAT+TGG - chr3_1:83949295-83949314 Msa0381730:three_prime_UTR 15.0%
!! TTAAATCAAAAATTCAAATG+AGG - chr3_1:83949837-83949856 Msa0381730:CDS 15.0%
!! ACAAAATAAAATGAAAAACA+TGG + chr3_1:83951174-83951193 None:intergenic 15.0%
!!! AAGTATAAGTACAATTTTAA+CGG - chr3_1:83951551-83951570 Msa0381730:intron 15.0%
!!! TAGTTTAGATTGGAAAATTT+TGG - chr3_1:83949305-83949324 Msa0381730:three_prime_UTR 20.0%
!! ACTAAATTGAACAATTTGAA+AGG + chr3_1:83950008-83950027 None:intergenic 20.0%
!!! ATAATTTGAAATTTCGTTAG+AGG - chr3_1:83950061-83950080 Msa0381730:CDS 20.0%
!! CTTGGAAAAACAAATAAATA+AGG + chr3_1:83950947-83950966 None:intergenic 20.0%
!! CAAATGAACAATTATACAAA+TGG + chr3_1:83951075-83951094 None:intergenic 20.0%
!! TGTTATACAACATGATTATT+TGG - chr3_1:83951285-83951304 Msa0381730:CDS 20.0%
!! TATACAGAAAATACTTGTTT+CGG + chr3_1:83951690-83951709 None:intergenic 20.0%
!! TATGTTTGGTTTATGTTTGA+AGG - chr3_1:83948882-83948901 Msa0381730:three_prime_UTR 25.0%
! AAAGTAAAAAATGGAGGTTA+TGG - chr3_1:83948920-83948939 Msa0381730:three_prime_UTR 25.0%
! GAAAAAATTGAATACCAAGA+AGG + chr3_1:83949145-83949164 None:intergenic 25.0%
!!! AAAATAAAAGCTTGAGTTGA+AGG + chr3_1:83949170-83949189 None:intergenic 25.0%
! TGAAAAAATAGTCATCAAAG+AGG + chr3_1:83949214-83949233 None:intergenic 25.0%
!! TTTGGACATTCATCTATTTT+AGG - chr3_1:83949323-83949342 Msa0381730:three_prime_UTR 25.0%
!! TTGGACATTCATCTATTTTA+GGG - chr3_1:83949324-83949343 Msa0381730:three_prime_UTR 25.0%
! TAGTGTATTGAACTATTTGT+TGG - chr3_1:83949424-83949443 Msa0381730:three_prime_UTR 25.0%
!!! ATTTTATTTTGTGAATCTGC+AGG - chr3_1:83949778-83949797 Msa0381730:CDS 25.0%
!! GTCTATGAATTTTCAAATCA+TGG - chr3_1:83950038-83950057 Msa0381730:CDS 25.0%
! TATTAGTTCCTAAAGTTGTA+GGG + chr3_1:83950102-83950121 None:intergenic 25.0%
! TTATTAGTTCCTAAAGTTGT+AGG + chr3_1:83950103-83950122 None:intergenic 25.0%
! GTTTATTCATTCAAACATAG+TGG - chr3_1:83950126-83950145 Msa0381730:CDS 25.0%
! GAAAGGAAAGAAAAAGAAAA+AGG + chr3_1:83950171-83950190 None:intergenic 25.0%
! TTCAAATTTGAGCTTACAAA+GGG + chr3_1:83950436-83950455 None:intergenic 25.0%
! TTTCAAATTTGAGCTTACAA+AGG + chr3_1:83950437-83950456 None:intergenic 25.0%
! ATGAGTTTCAATTTATGAAG+AGG - chr3_1:83950764-83950783 Msa0381730:CDS 25.0%
! TGAGTTTCAATTTATGAAGA+GGG - chr3_1:83950765-83950784 Msa0381730:CDS 25.0%
! ATGAACAATTATACAAATGG+AGG + chr3_1:83951072-83951091 None:intergenic 25.0%
! AATTGTTCATTTGTGAGTAT+TGG - chr3_1:83951082-83951101 Msa0381730:intron 25.0%
!!! TTTTATTTTGTGAGTGTTCA+TGG - chr3_1:83951183-83951202 Msa0381730:intron 25.0%
! AGAGGATGAAATATAAACTT+AGG + chr3_1:83951523-83951542 None:intergenic 25.0%
! AAATGGGTCAAAGCATTAAT+CGG - chr3_1:83948757-83948776 Msa0381730:three_prime_UTR 30.0%
! TTGTTGTTGTTGACTATGTT+TGG - chr3_1:83948868-83948887 Msa0381730:three_prime_UTR 30.0%
AGGGTGGTAAAAGTAAAAAA+TGG - chr3_1:83948911-83948930 Msa0381730:three_prime_UTR 30.0%
GTGGTAAAAGTAAAAAATGG+AGG - chr3_1:83948914-83948933 Msa0381730:three_prime_UTR 30.0%
! CTAACAAGTCTAAAATCCTT+AGG + chr3_1:83949081-83949100 None:intergenic 30.0%
!! CTAAGGATTTTAGACTTGTT+AGG - chr3_1:83949079-83949098 Msa0381730:three_prime_UTR 30.0%
! GTATTGAACTATTTGTTGGA+AGG - chr3_1:83949428-83949447 Msa0381730:three_prime_UTR 30.0%
TGTGTTTGTAATGAATGTGA+GGG - chr3_1:83949454-83949473 Msa0381730:three_prime_UTR 30.0%
TTCATTAAGCATATTCTGCA+CGG + chr3_1:83949661-83949680 None:intergenic 30.0%
AAAATTCAAATGAGGCAAGA+AGG - chr3_1:83949845-83949864 Msa0381730:CDS 30.0%
AGGAAAGAAAAAGAAAAAGG+TGG + chr3_1:83950168-83950187 None:intergenic 30.0%
AAGCATCTTTCTTTGTAGAA+AGG + chr3_1:83950188-83950207 None:intergenic 30.0%
AAAAGAACAATGTCACAACA+AGG - chr3_1:83950476-83950495 Msa0381730:CDS 30.0%
AAATGTATAACAGAGCTCAA+AGG - chr3_1:83950728-83950747 Msa0381730:CDS 30.0%
! ATCATTCACTCAACTTTTCT+AGG - chr3_1:83950833-83950852 Msa0381730:CDS 30.0%
TGGACGAATTGTCAATTTAT+GGG - chr3_1:83951130-83951149 Msa0381730:intron 30.0%
TTGATTCAATGGCAAAAACT+AGG + chr3_1:83951394-83951413 None:intergenic 30.0%
!! GGTGAGATTTATTGATTCAA+TGG + chr3_1:83951405-83951424 None:intergenic 30.0%
TCTCACCATTAGATGATATA+TGG - chr3_1:83951418-83951437 Msa0381730:CDS 30.0%
TCACACCATATATCATCTAA+TGG + chr3_1:83951426-83951445 None:intergenic 30.0%
! ATTCCATATTCGAGTTCTAA+AGG - chr3_1:83951643-83951662 Msa0381730:exon 30.0%
!! TTCCATATTCGAGTTCTAAA+GGG - chr3_1:83951644-83951663 Msa0381730:exon 30.0%
! CAAATGGTATGAAAGCATAA+GGG - chr3_1:83951779-83951798 Msa0381730:five_prime_UTR 30.0%
AAGTAGAGAGAGAAAGAGAA+GGG + chr3_1:83948605-83948624 Msa0381720:CDS 35.0%
ACATGTTGTTCATCTTTGTC+TGG + chr3_1:83948793-83948812 None:intergenic 35.0%
TGGTTTATGTTTGAAGGTGA+AGG - chr3_1:83948888-83948907 Msa0381730:three_prime_UTR 35.0%
TTTATGTTTGAAGGTGAAGG+AGG - chr3_1:83948891-83948910 Msa0381730:three_prime_UTR 35.0%
TTATGTTTGAAGGTGAAGGA+GGG - chr3_1:83948892-83948911 Msa0381730:three_prime_UTR 35.0%
!! TTAGACTTGTTAGGCAAGAA+TGG - chr3_1:83949088-83949107 Msa0381730:three_prime_UTR 35.0%
!! TAGACTTGTTAGGCAAGAAT+GGG - chr3_1:83949089-83949108 Msa0381730:three_prime_UTR 35.0%
CTGTGTTTGTAATGAATGTG+AGG - chr3_1:83949453-83949472 Msa0381730:three_prime_UTR 35.0%
! CAGCAAACTTGAACTTTTGA+AGG - chr3_1:83949686-83949705 Msa0381730:CDS 35.0%
TATGTGTTGTGAATTGACAG+TGG - chr3_1:83949718-83949737 Msa0381730:CDS 35.0%
! TATTTTGTGAATCTGCAGGA+AGG - chr3_1:83949782-83949801 Msa0381730:CDS 35.0%
! ATTTTGTGAATCTGCAGGAA+GGG - chr3_1:83949783-83949802 Msa0381730:CDS 35.0%
! TTAAGTTGCCCTACAACTTT+AGG - chr3_1:83950091-83950110 Msa0381730:CDS 35.0%
ACGAGATGAACAAAGCTAAT+GGG - chr3_1:83950290-83950309 Msa0381730:intron 35.0%
AAGGGTTCTGCAAATTTCTT+TGG + chr3_1:83950418-83950437 None:intergenic 35.0%
! CTCAAATTTGAAACCATGCT+CGG - chr3_1:83950444-83950463 Msa0381730:intron 35.0%
TGAGTCAGGTTCATGTAATT+TGG + chr3_1:83950673-83950692 None:intergenic 35.0%
AACCAAGGCAAAGCTAAAAT+CGG - chr3_1:83950696-83950715 Msa0381730:CDS 35.0%
!!! TATGCTTTTAGAATCTCCGT+TGG + chr3_1:83950803-83950822 None:intergenic 35.0%
ATGGTGAAAAAGGGAAATAG+CGG - chr3_1:83950900-83950919 Msa0381730:intron 35.0%
CAACAAGATGTTGAACTTCT+TGG + chr3_1:83950965-83950984 None:intergenic 35.0%
! TCCTTGATGTTACTTGTGAA+GGG - chr3_1:83951044-83951063 Msa0381730:intron 35.0%
!! AGTATTGGTAATACTCAACC+TGG - chr3_1:83951097-83951116 Msa0381730:intron 35.0%
CTGGACGAATTGTCAATTTA+TGG - chr3_1:83951129-83951148 Msa0381730:intron 35.0%
TGTCTTGTGCATCATAGAAT+TGG + chr3_1:83951352-83951371 None:intergenic 35.0%
GGTGTGACTTATTCATTCAA+TGG - chr3_1:83951439-83951458 Msa0381730:CDS 35.0%
! ACTTATACTTTGAGAGTCAG+AGG + chr3_1:83951541-83951560 None:intergenic 35.0%
TGAAAGCTTGATCTCTTGTA+TGG - chr3_1:83951720-83951739 Msa0381730:five_prime_UTR 35.0%
! GCTTTCATACCATTTGGAAT+TGG + chr3_1:83951775-83951794 None:intergenic 35.0%
CCTTATGCTTTCATACCATT+TGG + chr3_1:83951781-83951800 None:intergenic 35.0%
! CCAAATGGTATGAAAGCATA+AGG - chr3_1:83951778-83951797 Msa0381730:five_prime_UTR 35.0%
GAAGTAGAGAGAGAAAGAGA+AGG + chr3_1:83948606-83948625 Msa0381720:CDS 40.0%
CAAAACTCAGCAACACTCAT+GGG - chr3_1:83948724-83948743 Msa0381730:three_prime_UTR 40.0%
AGGTTATGGAGAAGTTCATC+AGG - chr3_1:83948934-83948953 Msa0381730:three_prime_UTR 40.0%
CATCAGGAGATAACAGTTCA+TGG - chr3_1:83948950-83948969 Msa0381730:three_prime_UTR 40.0%
AGGAGATAACAGTTCATGGA+AGG - chr3_1:83948954-83948973 Msa0381730:three_prime_UTR 40.0%
GGAGATAACAGTTCATGGAA+GGG - chr3_1:83948955-83948974 Msa0381730:three_prime_UTR 40.0%
!! CTTAGGTTGAGCTCTAACAA+CGG + chr3_1:83949064-83949083 None:intergenic 40.0%
AATTGAATACCAAGAAGGCG+CGG + chr3_1:83949140-83949159 None:intergenic 40.0%
!! TGAACTTTTGAAGGAAGCAG+AGG - chr3_1:83949695-83949714 Msa0381730:CDS 40.0%
GTGTGATAGCATAGGAACAT+TGG - chr3_1:83949808-83949827 Msa0381730:CDS 40.0%
AAGGAGCTTTCAAAAGAGAG+AGG - chr3_1:83949864-83949883 Msa0381730:CDS 40.0%
AGGAGCTTTCAAAAGAGAGA+GGG - chr3_1:83949865-83949884 Msa0381730:CDS 40.0%
! TCTCTTTTCAGTCCTGAGTA+AGG - chr3_1:83949935-83949954 Msa0381730:CDS 40.0%
! TTTGAGATTTCCAGCAATGC+AGG - chr3_1:83950212-83950231 Msa0381730:intron 40.0%
CTTTGTTCATCTCGTGATTC+CGG + chr3_1:83950285-83950304 None:intergenic 40.0%
CACGAGATGAACAAAGCTAA+TGG - chr3_1:83950289-83950308 Msa0381730:intron 40.0%
CGAGATGAACAAAGCTAATG+GGG - chr3_1:83950291-83950310 Msa0381730:intron 40.0%
GAGATGAACAAAGCTAATGG+GGG - chr3_1:83950292-83950311 Msa0381730:intron 40.0%
!!! TGGGGTTTTTTCTAAGCTCT+CGG + chr3_1:83950386-83950405 None:intergenic 40.0%
! TCTGCAAATTTCTTTGGAGG+TGG + chr3_1:83950412-83950431 None:intergenic 40.0%
GGTTCTGCAAATTTCTTTGG+AGG + chr3_1:83950415-83950434 None:intergenic 40.0%
!!! TTTTTGACTTTGACCGAGCA+TGG + chr3_1:83950460-83950479 None:intergenic 40.0%
! ACGAGTAGCTTGTCCAATAT+GGG + chr3_1:83950521-83950540 None:intergenic 40.0%
! AACGAGTAGCTTGTCCAATA+TGG + chr3_1:83950522-83950541 None:intergenic 40.0%
! AGTGCTGTTACAACTATCCT+CGG + chr3_1:83950647-83950666 None:intergenic 40.0%
AGGATAGTTGTAACAGCACT+AGG - chr3_1:83950647-83950666 Msa0381730:intron 40.0%
ACCAAGGCAAAGCTAAAATC+GGG - chr3_1:83950697-83950716 Msa0381730:CDS 40.0%
!! GCTATTTCCCTTTTTCACCA+TGG + chr3_1:83950901-83950920 None:intergenic 40.0%
! GTCCTTGATGTTACTTGTGA+AGG - chr3_1:83951043-83951062 Msa0381730:intron 40.0%
TCCCTTCACAAGTAACATCA+AGG + chr3_1:83951048-83951067 None:intergenic 40.0%
!!! GTGAGTGTTCATGGTTTTGT+AGG - chr3_1:83951192-83951211 Msa0381730:intron 40.0%
ATAGTCCTCAACTTCAAGCA+TGG + chr3_1:83951625-83951644 None:intergenic 40.0%
!! AGCCCTTTAGAACTCGAATA+TGG + chr3_1:83951649-83951668 None:intergenic 40.0%
TCTAAAGGGCTTTCCATATC+AGG - chr3_1:83951658-83951677 Msa0381730:five_prime_UTR 40.0%
AGAGAAAGAGAAGGGTTCGT+GGG + chr3_1:83948597-83948616 Msa0381720:CDS 45.0%
AGAGAGAGAGAGAGTGAATG+TGG + chr3_1:83948686-83948705 Msa0381720:CDS 45.0%
!! CCATGAGTGTTGCTGAGTTT+TGG + chr3_1:83948726-83948745 Msa0381720:CDS 45.0%
CCAAAACTCAGCAACACTCA+TGG - chr3_1:83948723-83948742 Msa0381730:three_prime_UTR 45.0%
! TCATGGGTGCTTCTGGAAAA+TGG - chr3_1:83948740-83948759 Msa0381730:three_prime_UTR 45.0%
! CATGGGTGCTTCTGGAAAAT+GGG - chr3_1:83948741-83948760 Msa0381730:three_prime_UTR 45.0%
ACCACAAAGCAGCTTCTGAA+GGG - chr3_1:83948992-83949011 Msa0381730:three_prime_UTR 45.0%
CGTTGTTAGAGCTCAACCTA+AGG - chr3_1:83949062-83949081 Msa0381730:three_prime_UTR 45.0%
AATGTGAGGGTTATGAGTGC+AGG - chr3_1:83949467-83949486 Msa0381730:exon 45.0%
GTTATGAGTGCAGGCAAGAA+GGG - chr3_1:83949476-83949495 Msa0381730:exon 45.0%
TGAGGATTCAAGCACTTGTC+AGG - chr3_1:83949523-83949542 Msa0381730:CDS 45.0%
GAGGATTCAAGCACTTGTCA+GGG - chr3_1:83949524-83949543 Msa0381730:CDS 45.0%
AGGATTCAAGCACTTGTCAG+GGG - chr3_1:83949525-83949544 Msa0381730:CDS 45.0%
AGCAAGCTGCAGTGACATTA+AGG - chr3_1:83949562-83949581 Msa0381730:CDS 45.0%
AGTGACATTAAGGTGCATGC+AGG - chr3_1:83949572-83949591 Msa0381730:CDS 45.0%
TGCATACTCACTTGCTCAGA+AGG - chr3_1:83949892-83949911 Msa0381730:CDS 45.0%
TAATTGACGACGCCTTACTC+AGG + chr3_1:83949950-83949969 None:intergenic 45.0%
GAGAGTGGAAAATGAGGTGT+TGG + chr3_1:83950263-83950282 None:intergenic 45.0%
! ACACCTCATTTTCCACTCTC+CGG - chr3_1:83950263-83950282 Msa0381730:intron 45.0%
ATTCCGGAGAGTGGAAAATG+AGG + chr3_1:83950269-83950288 None:intergenic 45.0%
TGAACAAAGCTAATGGGGGA+TGG - chr3_1:83950296-83950315 Msa0381730:intron 45.0%
! GATGGAGTTGGTTGGAAAGA+TGG - chr3_1:83950314-83950333 Msa0381730:intron 45.0%
! GAGTTGGTTGGAAAGATGGA+TGG - chr3_1:83950318-83950337 Msa0381730:intron 45.0%
TCCATCAATCTAGTCTCCCA+AGG + chr3_1:83950352-83950371 None:intergenic 45.0%
! GCAAATTTCTTTGGAGGTGG+CGG + chr3_1:83950409-83950428 None:intergenic 45.0%
! CGAGTAGCTTGTCCAATATG+GGG + chr3_1:83950520-83950539 None:intergenic 45.0%
CAAGTCCAAGTTCCGAGTTT+CGG - chr3_1:83950548-83950567 Msa0381730:CDS 45.0%
ACTCTCATCGTACCGAAACT+CGG + chr3_1:83950563-83950582 None:intergenic 45.0%
ACATCCACAACTCCAATGTC+AGG - chr3_1:83950604-83950623 Msa0381730:intron 45.0%
CATCCACAACTCCAATGTCA+GGG - chr3_1:83950605-83950624 Msa0381730:intron 45.0%
TCACAAGTGTTCCCTGACAT+TGG + chr3_1:83950619-83950638 None:intergenic 45.0%
TGTCAGGGAACACTTGTGAA+AGG - chr3_1:83950620-83950639 Msa0381730:intron 45.0%
GAACCTGACTCAATCAACCA+AGG - chr3_1:83950681-83950700 Msa0381730:CDS 45.0%
TTGCCTTGGTTGATTGAGTC+AGG + chr3_1:83950687-83950706 None:intergenic 45.0%
!!! ACCCGATTTTAGCTTTGCCT+TGG + chr3_1:83950701-83950720 None:intergenic 45.0%
AGCTCAAAGGCAACAGTCAA+TGG - chr3_1:83950741-83950760 Msa0381730:CDS 45.0%
ACTTCACCTACCAACCCAAT+CGG - chr3_1:83950858-83950877 Msa0381730:CDS 45.0%
GGTGAGACCATGGTGAAAAA+GGG - chr3_1:83950891-83950910 Msa0381730:intron 45.0%
TGAAAAAGGGAAATAGCGGC+TGG - chr3_1:83950904-83950923 Msa0381730:intron 45.0%
GAAAAAGGGAAATAGCGGCT+GGG - chr3_1:83950905-83950924 Msa0381730:intron 45.0%
CTCAACCTGGAGAGATTATC+TGG - chr3_1:83951110-83951129 Msa0381730:intron 45.0%
TTCGTCCAGATAATCTCTCC+AGG + chr3_1:83951118-83951137 None:intergenic 45.0%
GAAAGAGAGACACTTGTGCA+TGG - chr3_1:83951463-83951482 Msa0381730:CDS 45.0%
TGACACCATGCTTGAAGTTG+AGG - chr3_1:83951617-83951636 Msa0381730:CDS 45.0%
GTTTCGGCATTCACCTGATA+TGG + chr3_1:83951674-83951693 None:intergenic 45.0%
TTCTGACCAATGCAAGCTCT+AGG - chr3_1:83951748-83951767 Msa0381730:five_prime_UTR 45.0%
ATTGGTCCTAGAGCTTGCAT+TGG + chr3_1:83951757-83951776 None:intergenic 45.0%
!! GCTCTAGGACCAATTCCAAA+TGG - chr3_1:83951763-83951782 Msa0381730:five_prime_UTR 45.0%
AGAAAGAGAAGGGTTCGTGG+GGG + chr3_1:83948595-83948614 Msa0381720:CDS 50.0%
GAGAAAGAGAAGGGTTCGTG+GGG + chr3_1:83948596-83948615 Msa0381720:CDS 50.0%
GAGAGAAAGAGAAGGGTTCG+TGG + chr3_1:83948598-83948617 Msa0381720:CDS 50.0%
TGTTTGAAGGTGAAGGAGGG+TGG - chr3_1:83948895-83948914 Msa0381730:three_prime_UTR 50.0%
! CTTCAGAAGCTGCTTTGTGG+TGG + chr3_1:83948993-83949012 None:intergenic 50.0%
CACCACAAAGCAGCTTCTGA+AGG - chr3_1:83948991-83949010 Msa0381730:three_prime_UTR 50.0%
! ACCCTTCAGAAGCTGCTTTG+TGG + chr3_1:83948996-83949015 None:intergenic 50.0%
GTGTAAGCTTCTGCAGCAGT+TGG + chr3_1:83949027-83949046 None:intergenic 50.0%
AGAAGCTTACACTGCTGCTG+TGG - chr3_1:83949035-83949054 Msa0381730:three_prime_UTR 50.0%
GGTTATGAGTGCAGGCAAGA+AGG - chr3_1:83949475-83949494 Msa0381730:exon 50.0%
!! AAGGGCTTTGAGGGCATTGA+AGG - chr3_1:83949494-83949513 Msa0381730:CDS 50.0%
!! TTTGAGGGCATTGAAGGCAG+TGG - chr3_1:83949500-83949519 Msa0381730:CDS 50.0%
TTGTCAGGGGTAGACAAGTG+AGG - chr3_1:83949538-83949557 Msa0381730:CDS 50.0%
TCGTCGTGTGAGGATGTCTA+TGG - chr3_1:83949626-83949645 Msa0381730:CDS 50.0%
TCGTGTGAGGATGTCTATGG+AGG - chr3_1:83949629-83949648 Msa0381730:CDS 50.0%
CGTGTGAGGATGTCTATGGA+GGG - chr3_1:83949630-83949649 Msa0381730:CDS 50.0%
TTGTGAATCTGCAGGAAGGG+TGG - chr3_1:83949786-83949805 Msa0381730:CDS 50.0%
GAAGGGTGGTGTGATAGCAT+AGG - chr3_1:83949800-83949819 Msa0381730:CDS 50.0%
CGCGAATTAGTGCTTGAGGT+TGG + chr3_1:83950238-83950257 None:intergenic 50.0%
GGTTCGCGAATTAGTGCTTG+AGG + chr3_1:83950242-83950261 None:intergenic 50.0%
AAGCTAATGGGGGATGGAGT+TGG - chr3_1:83950302-83950321 Msa0381730:intron 50.0%
! TAATGGGGGATGGAGTTGGT+TGG - chr3_1:83950306-83950325 Msa0381730:intron 50.0%
CAATCTAGTCTCCCAAGGCT+TGG + chr3_1:83950347-83950366 None:intergenic 50.0%
GCCTTGGGAGACTAGATTGA+TGG - chr3_1:83950348-83950367 Msa0381730:intron 50.0%
! ATTTCTTTGGAGGTGGCGGT+GGG + chr3_1:83950405-83950424 None:intergenic 50.0%
! AATTTCTTTGGAGGTGGCGG+TGG + chr3_1:83950406-83950425 None:intergenic 50.0%
AATATGGGGAGGAGGCTTAG+CGG + chr3_1:83950506-83950525 None:intergenic 50.0%
! GTAGCTTGTCCAATATGGGG+AGG + chr3_1:83950517-83950536 None:intergenic 50.0%
TCGTACCGAAACTCGGAACT+TGG + chr3_1:83950556-83950575 None:intergenic 50.0%
GTTCCCTGACATTGGAGTTG+TGG + chr3_1:83950611-83950630 None:intergenic 50.0%
GAACACTTGTGAAAGGACCG+AGG - chr3_1:83950627-83950646 Msa0381730:intron 50.0%
! AGGGCTGCAGTTTTCTCCAA+CGG - chr3_1:83950784-83950803 Msa0381730:CDS 50.0%
!! GATTGGGTTGGTAGGTGAAG+TGG + chr3_1:83950859-83950878 None:intergenic 50.0%
!! TCTTGTCCGATTGGGTTGGT+AGG + chr3_1:83950867-83950886 None:intergenic 50.0%
AACCCAATCGGACAAGAGCT+CGG - chr3_1:83950870-83950889 Msa0381730:CDS 50.0%
CGGTGAGACCATGGTGAAAA+AGG - chr3_1:83950890-83950909 Msa0381730:intron 50.0%
GAAAGAGAAGGGTTCGTGGG+GGG + chr3_1:83948594-83948613 Msa0381720:CDS 55.0%
GCAACACTCATGGGTGCTTC+TGG - chr3_1:83948733-83948752 Msa0381730:three_prime_UTR 55.0%
! AGAAGGCGCGGAAAGTGGTT+TGG + chr3_1:83949128-83949147 None:intergenic 55.0%
AACCACTTTCCGCGCCTTCT+TGG - chr3_1:83949128-83949147 Msa0381730:three_prime_UTR 55.0%
! TACCAAGAAGGCGCGGAAAG+TGG + chr3_1:83949133-83949152 None:intergenic 55.0%
TGCAGGCAAGAAGGGCTTTG+AGG - chr3_1:83949484-83949503 Msa0381730:CDS 55.0%
! GCAGGCAAGAAGGGCTTTGA+GGG - chr3_1:83949485-83949504 Msa0381730:CDS 55.0%
GAGTAAGAGCTCGTCGTGTG+AGG - chr3_1:83949616-83949635 Msa0381730:CDS 55.0%
!! TTGAGGTTGGCCTGCATTGC+TGG + chr3_1:83950225-83950244 None:intergenic 55.0%
CATCTCGTGATTCCGGAGAG+TGG + chr3_1:83950278-83950297 None:intergenic 55.0%
ATGGATGGCAGCCAAGCCTT+GGG - chr3_1:83950333-83950352 Msa0381730:intron 55.0%
! TTTCTTTGGAGGTGGCGGTG+GGG + chr3_1:83950404-83950423 None:intergenic 55.0%
GCTAAGCCTCCTCCCCATAT+TGG - chr3_1:83950505-83950524 Msa0381730:CDS 55.0%
GCTTGTCCAATATGGGGAGG+AGG + chr3_1:83950514-83950533 None:intergenic 55.0%
GAGCTCTTGTCCGATTGGGT+TGG + chr3_1:83950871-83950890 None:intergenic 55.0%
CACCGAGCTCTTGTCCGATT+GGG + chr3_1:83950875-83950894 None:intergenic 55.0%
TCACCGAGCTCTTGTCCGAT+TGG + chr3_1:83950876-83950895 None:intergenic 55.0%
! ACAAGAGCTCGGTGAGACCA+TGG - chr3_1:83950881-83950900 Msa0381730:CDS 55.0%
AAAGGGAAATAGCGGCTGGG+TGG - chr3_1:83950908-83950927 Msa0381730:intron 55.0%
!! GGGCATTGAAGGCAGTGGTG+AGG - chr3_1:83949505-83949524 Msa0381730:CDS 60.0%
GATGGATGGCAGCCAAGCCT+TGG - chr3_1:83950332-83950351 Msa0381730:intron 60.0%
AGAAGGGTTCGTGGGGGGTG+TGG + chr3_1:83948589-83948608 Msa0381720:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83948580 83951809 83948580 ID=Msa0381730;Name=Msa0381730
chr3_1 mRNA 83948580 83951809 83948580 ID=Msa0381730-mRNA-1;Parent=Msa0381730;Name=Msa0381730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=162|1|1|1|1|1|5|903|445
chr3_1 exon 83948580 83950163 83948580 ID=Msa0381730-mRNA-1:exon:21754;Parent=Msa0381730-mRNA-1
chr3_1 exon 83950476 83950589 83950476 ID=Msa0381730-mRNA-1:exon:21753;Parent=Msa0381730-mRNA-1
chr3_1 exon 83950673 83950900 83950673 ID=Msa0381730-mRNA-1:exon:21752;Parent=Msa0381730-mRNA-1
chr3_1 exon 83951240 83951485 83951240 ID=Msa0381730-mRNA-1:exon:21751;Parent=Msa0381730-mRNA-1
chr3_1 exon 83951579 83951809 83951579 ID=Msa0381730-mRNA-1:exon:21750;Parent=Msa0381730-mRNA-1
chr3_1 five_prime_UTR 83951648 83951809 83951648 ID=Msa0381730-mRNA-1:five_prime_utr;Parent=Msa0381730-mRNA-1
chr3_1 CDS 83951579 83951647 83951579 ID=Msa0381730-mRNA-1:cds;Parent=Msa0381730-mRNA-1
chr3_1 CDS 83951240 83951485 83951240 ID=Msa0381730-mRNA-1:cds;Parent=Msa0381730-mRNA-1
chr3_1 CDS 83950673 83950900 83950673 ID=Msa0381730-mRNA-1:cds;Parent=Msa0381730-mRNA-1
chr3_1 CDS 83950476 83950589 83950476 ID=Msa0381730-mRNA-1:cds;Parent=Msa0381730-mRNA-1
chr3_1 CDS 83949483 83950163 83949483 ID=Msa0381730-mRNA-1:cds;Parent=Msa0381730-mRNA-1
chr3_1 three_prime_UTR 83948580 83949482 83948580 ID=Msa0381730-mRNA-1:three_prime_utr;Parent=Msa0381730-mRNA-1
Gene Sequence

>Msa0381730

ATGGGTGCTTCTGGAAAATGGGTCAAAGCATTAATCGGATTCAAGAAACCAGACAAAGATGAACAACATGTGAAGGAGGGTGGTAAAAGTAAAAAATGGAGGTTATGGAGAAGTTCATCAGGAGATAACAGTTCATGGAAGGGTTTCAAAACAAACCACCACAAAGCAGCTTCTGAAGGGTCTGAATCTCCAACTGCTGCAGAAGCTTACACTGCTGCTGTGGCTACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTTGTTAGGCAAGAATGGGCTGCTATAAGAATCCAAACCACTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCATTGAAGGCAGTGGTGAGGATTCAAGCACTTGTCAGGGGTAGACAAGTGAGGAAGCAAGCTGCAGTGACATTAAGGTGCATGCAGGCATTAGTTCGTGTTCAAGCTCGAGTAAGAGCTCGTCGTGTGAGGATGTCTATGGAGGGACAAGCCGTGCAGAATATGCTTAATGAACGACGCAGCAAACTTGAACTTTTGAAGGAAGCAGAGGAAGGGTGGTGTGATAGCATAGGAACATTGGAAGATGTTAAATCAAAAATTCAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAGAGGGCACTTGCATACTCACTTGCTCAGAAGCAATGCAGGCCAACCTCAAGCACTAATTCGCGAACCAACACCTCATTTTCCACTCTCCGGAATCACGAGATGAACAAAGCTAATGGGGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACTAGATTGATGGAACAGTCTCACGCCGAGAGCTTAGAAAAAACCCCACCGCCACCTCCAAAGAAATTTGCAGAACCCTTTGTAAGCTCAAATTTGAAACCATGCTCGGTCAAAGTCAAAAAGAACAATGTCACAACAAGGATTTCCGCTAAGCCTCCTCCCCATATTGGACAAGCTACTCGTTCATCGTCAAGTCCAAGTTCCGAGTTTCGGTACGATGAGAGTTCTGCATCATCTTCTATTTGTACATCCACAACTCCAATGTCAGGGAACACTTGTGAAAGGACCGAGGATAGTTGTAACAGCACTAGGCCAAATTACATGAACCTGACTCAATCAACCAAGGCAAAGCTAAAATCGGGTAGTAATCAAATGTATAACAGAGCTCAAAGGCAACAGTCAATGGATGAGTTTCAATTTATGAAGAGGGCTGCAGTTTTCTCCAACGGAGATTCTAAAAGCATAGCTGCTTCTGATCATTCACTCAACTTTTCTAGGCCACTTCACCTACCAACCCAATCGGACAAGAGCTCGGTGAGACCATGGTGA
Protein sequence

>Msa0381730

MGASGKWVKALIGFKKPDKDEQHVKEGGKSKKWRLWRSSSGDNSSWKGFKTNHHKAASEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRSKLELLKEAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQCRPTSSTNSRTNTSFSTLRNHEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLEKTPPPPPKKFAEPFVSSNLKPCSVKVKKNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCERTEDSCNSTRPNYMNLTQSTKAKLKSGSNQMYNRAQRQQSMDEFQFMKRAAVFSNGDSKSIAASDHSLNFSRPLHLPTQSDKSSVRPW*