AlfalfaGEDB | Msa0080820

M. sativa cultivar zhongmu-4 / Msa0080820

KEGG: -
GO: GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
PFAM: PF07983.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080820	XP_003591242.2	94.787	633	33	0	1	633	1	633	0.0	1021

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080820	sp\|O65399\|E131_ARATH	51.515	99	46	2	418	514	379	477	6.65e-25	112

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080820	G7IAB2	94.787	633	33	0	1	633	1	633	0.0	1021

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026250	Msa0080820	0.871334	7.395897e-67	-8.615850e-47
Msa0033220	Msa0080820	0.822693	2.066170e-53	-8.615850e-47
Msa0034700	Msa0080820	-0.836034	1.185290e-56	-8.615850e-47
Msa0038530	Msa0080820	0.805908	1.063765e-49	-8.615850e-47
Msa0074060	Msa0080820	0.839143	1.889646e-57	-8.615850e-47
Msa0077570	Msa0080820	-0.817849	2.664393e-52	-8.615850e-47
Msa0079880	Msa0080820	0.819732	9.952397e-53	-8.615850e-47
Msa0080030	Msa0080820	0.820043	8.448699e-53	-8.615850e-47
Msa0080820	Msa0086250	0.808296	3.321413e-50	-8.615850e-47
Msa0080820	Msa0116620	0.821420	4.076272e-53	-8.615850e-47

Showing 1 to 10 of 109 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080820	MtrunA17_Chr1g0193131	94.787	633	33	0	1	633	1	633	0.0	1021
Msa0080820	MtrunA17_Chr7g0271411	63.402	194	50	8	318	503	64	244	7.75e-56	191
Msa0080820	MtrunA17_Chr3g0096451	47.799	159	60	4	346	503	60	196	8.33e-37	138
Msa0080820	MtrunA17_Chr5g0443331	54.545	110	49	1	402	510	90	199	7.02e-32	124
Msa0080820	MtrunA17_Chr2g0304061	41.589	214	82	6	331	511	46	249	3.20e-30	121
Msa0080820	MtrunA17_Chr2g0304061	48.819	127	48	2	420	546	158	267	5.95e-26	109
Msa0080820	MtrunA17_Chr8g0381081	53.636	110	47	3	405	512	44	151	7.29e-29	113
Msa0080820	MtrunA17_Chr8g0378371	60.227	88	33	1	418	505	31	116	8.00e-29	110
Msa0080820	MtrunA17_Chr1g0177171	57.609	92	37	2	416	505	402	493	4.20e-28	118
Msa0080820	MtrunA17_Chr8g0378361	45.038	131	60	2	419	548	29	148	2.72e-27	108

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080820	AT1G09460.1	69.048	126	36	2	386	509	101	225	6.37e-44	160
Msa0080820	AT2G30933.1	60.638	94	36	1	418	510	80	173	1.03e-33	129
Msa0080820	AT1G29380.3	65.556	90	30	1	420	508	148	237	2.70e-32	126
Msa0080820	AT1G29380.1	66.667	84	27	1	420	502	148	231	5.09e-31	124
Msa0080820	AT2G30933.2	44.615	130	40	2	368	496	61	159	1.63e-29	114
Msa0080820	AT2G30933.3	44.615	130	40	2	368	496	61	159	1.63e-29	114
Msa0080820	AT1G29380.4	67.949	78	24	1	420	496	148	225	3.47e-29	116
Msa0080820	AT1G29380.2	67.949	78	24	1	420	496	148	225	3.47e-29	116
Msa0080820	AT2G05790.1	54.310	116	48	3	395	505	356	471	5.10e-29	121
Msa0080820	AT1G11820.2	51.515	99	46	2	418	514	379	477	6.76e-26	112

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

Find 172 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATCGTTGCTGCCTG+TGG	0.556134	1_2:+59205000	Msa0080820:CDS
AAAATATTCTAAGCAGCTCA+TGG	0.499869	1_2:-59206922	None:intergenic
AAAGCATTTCACATGTGCGC+AGG	0.560995	1_2:-59207300	Msa0080830:three_prime_UTR
AAAGTGCCTGAAGATGTTGG+TGG	0.686382	1_2:-59206455	None:intergenic
AACAACTCCAACCATTACAC+CGG	0.624559	1_2:+59205746	Msa0080820:CDS
AACCTGTTTCTGAACTCTAT+AGG	0.458686	1_2:-59206768	None:intergenic
AACTCAAGCAACCCAGCTTC+AGG	0.391337	1_2:+59206610	Msa0080820:CDS
AACTCTATAGGTGCATGCTG+AGG	0.632489	1_2:-59206756	None:intergenic
AACTTCCTTAAGACTTGAAG+TGG	0.484162	1_2:-59205138	None:intergenic
AAGACTATACAGCCAGTAAA+AGG	0.355621	1_2:-59206709	None:intergenic

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGATAAAGGAGATGAGT+GGG	-	chr1_2:59204489-59204508	None:intergenic	30.0%
TACACAATACTCTCTGATAA+TGG	+	chr1_2:59204578-59204597	Msa0080820:exon	30.0%
TCTCTCTTAATTTCATGTTC+TGG	+	chr1_2:59204636-59204655	Msa0080820:CDS	30.0%
TCTTACAAACTCAAATGTGT+TGG	+	chr1_2:59204867-59204886	Msa0080820:CDS	30.0%
AAGTAAGGAAGTGAAAATCT+CGG	+	chr1_2:59205107-59205126	Msa0080820:CDS	30.0%
CTTCAATGAAAGAACTCAAA+AGG	+	chr1_2:59205472-59205491	Msa0080820:CDS	30.0%
TGATTGTTCTCAAATACAAC+AGG	+	chr1_2:59206016-59206035	Msa0080820:CDS	30.0%
GATTGTTCTCAAATACAACA+GGG	+	chr1_2:59206017-59206036	Msa0080820:CDS	30.0%
CATGATTAGTACATGCTTAT+TGG	-	chr1_2:59206535-59206554	None:intergenic	30.0%
CAATAAGCATGTACTAATCA+TGG	+	chr1_2:59206533-59206552	Msa0080820:intron	30.0%

Showing 1 to 10 of 201 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	59204447	59207342	59204447	ID=Msa0080820;Name=Msa0080820
chr1_2	mRNA	59204447	59207342	59204447	ID=Msa0080820-mRNA-1;Parent=Msa0080820;Name=Msa0080820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=150\|1\|1\|1\|0.33\|0.25\|4\|568\|633
chr1_2	exon	59204447	59204657	59204447	ID=Msa0080820-mRNA-1:exon:19143;Parent=Msa0080820-mRNA-1
chr1_2	exon	59204746	59206170	59204746	ID=Msa0080820-mRNA-1:exon:19144;Parent=Msa0080820-mRNA-1
chr1_2	exon	59206255	59206480	59206255	ID=Msa0080820-mRNA-1:exon:19145;Parent=Msa0080820-mRNA-1
chr1_2	exon	59206585	59207342	59206585	ID=Msa0080820-mRNA-1:exon:19146;Parent=Msa0080820-mRNA-1
chr1_2	five_prime_UTR	59204447	59204596	59204447	ID=Msa0080820-mRNA-1:five_prime_utr;Parent=Msa0080820-mRNA-1
chr1_2	CDS	59204597	59204657	59204597	ID=Msa0080820-mRNA-1:cds;Parent=Msa0080820-mRNA-1
chr1_2	CDS	59204746	59206170	59204746	ID=Msa0080820-mRNA-1:cds;Parent=Msa0080820-mRNA-1
chr1_2	CDS	59206255	59206480	59206255	ID=Msa0080820-mRNA-1:cds;Parent=Msa0080820-mRNA-1
chr1_2	CDS	59206585	59206774	59206585	ID=Msa0080820-mRNA-1:cds;Parent=Msa0080820-mRNA-1
chr1_2	three_prime_UTR	59206775	59207342	59206775	ID=Msa0080820-mRNA-1:three_prime_utr;Parent=Msa0080820-mRNA-1

Gene Sequence

>Msa0080820

ATGGCCAAGGAAGCTTCTTTCTGCCTCATGTTTCTCTCTTCTCTCTTAATTTCATGTTCTGGTTCTTTGGTGGGTTTTTCCTATCATGAGAGAGGAGACACTTGGACATCATTACTCCAGCAGAGCAAAGTTTCTTCGTCTCAGATTCGAGCTTTCGTCACAGATCATAGGATTTTGAGCACTCTTACAAACTCAAATGTGTTGGTTGATCTCTACTTAAACAAAAGCCAAGTTGAAAAATTCATTATTTCAAACCCTTCAGCAGTTTCTGAGCTAAAAGCTCAACTAGTGAACTTTCTTCCACATTTAAACATCAAAAGCATCGTTGCTGCCTGTGGAAGTGAGTGCTTAGTACAAAATGAGATGCCTTTGATTATGCATGCTCTTAAATCAATTCATTCAATTCTCAGTGATCTTCACATAAGTAAGGAAGTGAAAATCTCGGTCGCATTTCCACTTCAAGTCTTAAGGAAGTTGAATGCATCACAACAACACGAAATTCGTAGATTACTTTCATTTATAAAGGAAACGAAATCGTTTGTAATGATAGAAGATAGCATTGATGGAGAATTAAGTGTGGATGATCATTTTGTTCAAACAATTATCAACCGCGCTAATCTTGCTGCTTCTGTTCTTCCTTGCAAAGATGTTCCTGTGGTTCTTACAATCAAGAGTTCAGTTATACCAAGTTCAATAGAAGTAACTCGATTTAGTAAAAGAGTATCCAAATATTTAGAAGCAAAAAGAATAGCTGCATTATATGTAGAACTGCATACAACAGAAGATTCTTCAATGAAAGAACTCAAAAGGGAAGAGGAAGGTATGTTTCCTTTGTCTAGAAGAGAGATCTTAAGCAAATTCCACAGAAGAAATATTCTAGATAACACAAACAGTCCAACAAACACAGTTTACCCTACAAATCCAACACCAGTTATTACACCCTCAGATACTCCAACCATTATAGCAGTTCCTTCCACAAATCCTGTCACAATTTCCCCTACAAATCCAGCTGCAATGCCAGTAACAGTTCCTTCAACTACACCTGCTGTTCCTTTACCTCCAACAACTCCAACCATTACACCGGCACCAGTCTTCAATCCAGCTACAACTCCTACAACAGTTCCAGGTGCACCACCAGTAACATCTTATCCACCTCCAGTAACATCTTATCCACCTCCATTAGGAAATGTTCCAGTGGTAAACCCTCAACAGCCACCTCCTTCAAACACAAATGCTCCCTCTGCTCAGGGACAGAGTTGGTGTGTGGCGAAAACAGGTGCTCCACAAGCTTCCCTTCAATCAGCATTGGATTATGCTTGTGGAAATGGTGCTGATTGTTCTCAAATACAACAGGGTGCAAGTTGTTACAGTCCTGTTACTTTGCAGAACCATGCTTCTTTTGCCTTCAACAGTTACTATCAAAAGAAGCCAGCTCCAACAAGTTGCGACTTTGGAGGCGCTGCTATGTTAGTTAGCTCAAATCCAAGTTCTGGTTCTTGCATTTATCCGTCATCATCTTCATCGTCGTCGTCATCCTCAACTTCACCAATGATATCATCTCCAACACCACCTACACAATCAACTTCAACTTCAATACCACCACCAAATCTAACAACACCTCCACCATCTATTCCGACAATAGCGCCACCAACAATGTCAACAGCTCCACCATCAATTCCAACAGCTCCACCAACATCTTCAGGCACTTTTGGCTATGGTACCCCACCTTCAGTGTTAAACTCAAGCAACCCAGCTTCAGGTACAATGCCAGATTTTGGGTCTGATAGCCCTCCTATTGTAAACACAACATCGGCCTCGCACCCTCGAGCTCTGAAACCTTTTACTGGCTGTATAGTCTTGATGATTCCATTTGTCACTGCAAGCCTCAGCATGCACCTATAG

Protein sequence

>Msa0080820

MAKEASFCLMFLSSLLISCSGSLVGFSYHERGDTWTSLLQQSKVSSSQIRAFVTDHRILSTLTNSNVLVDLYLNKSQVEKFIISNPSAVSELKAQLVNFLPHLNIKSIVAACGSECLVQNEMPLIMHALKSIHSILSDLHISKEVKISVAFPLQVLRKLNASQQHEIRRLLSFIKETKSFVMIEDSIDGELSVDDHFVQTIINRANLAASVLPCKDVPVVLTIKSSVIPSSIEVTRFSKRVSKYLEAKRIAALYVELHTTEDSSMKELKREEEGMFPLSRREILSKFHRRNILDNTNSPTNTVYPTNPTPVITPSDTPTIIAVPSTNPVTISPTNPAAMPVTVPSTTPAVPLPPTTPTITPAPVFNPATTPTTVPGAPPVTSYPPPVTSYPPPLGNVPVVNPQQPPPSNTNAPSAQGQSWCVAKTGAPQASLQSALDYACGNGADCSQIQQGASCYSPVTLQNHASFAFNSYYQKKPAPTSCDFGGAAMLVSSNPSSGSCIYPSSSSSSSSSSTSPMISSPTPPTQSTSTSIPPPNLTTPPPSIPTIAPPTMSTAPPSIPTAPPTSSGTFGYGTPPSVLNSSNPASGTMPDFGSDSPPIVNTTSASHPRALKPFTGCIVLMIPFVTASLSMHL*