AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002540 MtrunA17_Chr3g0126511 93.182 220 12 2 222 438 145 364 2.89e-142 410
Msa0002540 MtrunA17_Chr3g0126511 97.561 164 4 0 1 164 1 164 2.70e-115 342
Msa0002540 MtrunA17_Chr3g0136711 64.205 176 63 0 239 414 105 280 3.77e-78 244
Msa0002540 MtrunA17_Chr3g0136711 56.471 85 37 0 80 164 20 104 1.19e-25 106
Msa0002540 MtrunA17_Chr1g0150451 64.773 176 62 0 239 414 148 323 3.83e-78 246
Msa0002540 MtrunA17_Chr1g0150451 48.214 112 51 2 53 164 43 147 1.67e-26 109
Msa0002540 MtrunA17_Chr1g0212961 61.017 177 65 2 239 415 166 338 1.44e-70 226
Msa0002540 MtrunA17_Chr1g0212961 42.405 158 62 4 26 163 16 164 1.12e-27 112
Msa0002540 MtrunA17_Chr4g0050381 35.088 342 141 10 77 414 12 276 1.84e-47 164
Msa0002540 MtrunA17_Chr2g0279151 48.045 179 87 4 239 414 105 280 3.93e-44 155
Msa0002540 MtrunA17_Chr3g0115851 44.134 179 94 4 239 414 106 281 9.60e-42 149
Msa0002540 MtrunA17_Chr4g0070871 47.191 178 68 4 260 412 325 501 3.05e-40 150
Msa0002540 MtrunA17_Chr3g0112291 44.624 186 80 4 260 423 200 384 5.74e-40 147
Msa0002540 MtrunA17_Chr3g0105351 40.437 183 98 3 241 416 138 316 7.35e-40 145
Msa0002540 MtrunA17_Chr3g0105371 41.530 183 96 3 241 416 162 340 1.23e-39 145
Msa0002540 MtrunA17_Chr5g0426141 44.134 179 94 4 239 414 106 281 1.38e-39 143
Msa0002540 MtrunA17_Chr8g0360351 45.506 178 91 4 241 415 108 282 3.19e-38 140
Msa0002540 MtrunA17_Chr1g0150781 44.809 183 78 3 260 420 368 549 3.33e-38 145
Msa0002540 MtrunA17_Chr5g0430481 41.530 183 96 3 241 416 198 376 3.35e-38 142
Msa0002540 MtrunA17_Chr2g0317021 44.262 183 96 4 235 414 153 332 1.09e-36 137
Msa0002540 MtrunA17_Chr3g0135961 44.505 182 78 4 260 419 364 544 2.40e-36 140
Msa0002540 MtrunA17_Chr2g0299981 41.758 182 83 3 260 419 360 540 9.57e-36 138
Msa0002540 MtrunA17_Chr5g0435721 54.839 124 54 2 260 382 298 420 4.11e-35 135
Msa0002540 MtrunA17_Chr1g0150071 29.412 374 192 12 89 433 18 348 7.73e-33 127
Msa0002540 MtrunA17_Chr8g0389921 39.024 205 104 6 241 428 248 448 1.80e-32 128
Msa0002540 MtrunA17_Chr4g0051661 39.698 199 110 6 222 414 203 397 4.82e-32 125
Msa0002540 MtrunA17_Chr1g0171571 44.872 156 83 3 260 412 487 642 1.15e-31 127
Msa0002540 MtrunA17_Chr5g0396731 40.909 176 83 3 260 415 177 351 9.29e-30 118
Msa0002540 MtrunA17_Chr3g0144111 38.095 189 101 6 241 418 48 231 1.11e-29 116
Msa0002540 MtrunA17_Chr1g0158781 45.029 171 74 4 260 412 209 377 2.25e-28 115
Msa0002540 MtrunA17_Chr4g0001761 28.448 348 194 13 89 416 18 330 1.20e-27 113
Msa0002540 MtrunA17_Chr2g0293811 33.188 229 120 7 212 412 106 329 1.25e-27 113
Msa0002540 MtrunA17_Chr5g0407161 31.933 238 137 7 197 417 119 348 2.08e-27 112
Msa0002540 MtrunA17_Chr3g0136811 37.113 194 101 5 260 435 160 350 9.01e-26 107
Msa0002540 MtrunA17_Chr4g0065141 32.836 201 118 4 231 417 156 353 3.23e-25 106
Msa0002540 MtrunA17_Chr1g0194191 33.889 180 103 4 260 426 188 364 1.78e-24 104
Msa0002540 MtrunA17_Chr3g0138281 33.166 199 118 5 231 417 153 348 6.74e-23 99.8
Msa0002540 MtrunA17_Chr6g0483411 32.995 197 109 5 241 416 126 320 4.35e-22 96.3
Msa0002540 MtrunA17_Chr7g0272061 32.323 198 110 6 239 412 162 359 2.03e-18 86.7
Msa0002540 MtrunA17_Chr1g0192421 30.622 209 116 7 235 415 144 351 3.07e-18 85.9
Msa0002540 MtrunA17_Chr4g0067711 31.285 179 103 6 239 399 154 330 1.47e-17 84.0
Msa0002540 MtrunA17_Chr2g0295401 31.414 191 105 7 254 420 171 359 3.53e-17 82.8
Msa0002540 MtrunA17_Chr1g0185141 29.204 226 102 7 245 412 211 436 2.50e-16 81.6
Msa0002540 MtrunA17_Chr1g0209451 33.516 182 105 7 246 412 115 295 3.61e-16 80.1
Msa0002540 MtrunA17_Chr1g0187481 30.519 154 90 2 262 415 142 278 1.64e-15 76.6
Msa0002540 MtrunA17_Chr7g0256751 29.902 204 104 8 244 409 116 318 1.66e-15 78.2
Msa0002540 MtrunA17_Chr8g0371321 28.141 199 104 5 239 399 120 317 1.69e-15 77.8
Msa0002540 MtrunA17_Chr1g0153671 32.474 194 116 6 246 424 112 305 2.78e-15 77.4
Msa0002540 MtrunA17_Chr7g0263281 27.350 234 110 6 241 415 114 346 3.68e-15 76.6
Msa0002540 MtrunA17_Chr1g0213351 28.431 204 107 5 234 399 116 318 6.28e-15 76.3
Msa0002540 MtrunA17_Chr1g0151781 35.526 152 81 4 245 380 137 287 8.33e-15 75.5
Msa0002540 MtrunA17_Chr7g0256771 31.461 178 81 7 244 382 117 292 1.41e-14 74.3
Msa0002540 MtrunA17_Chr1g0207571 29.775 178 90 4 260 403 129 305 1.43e-14 75.1
Msa0002540 MtrunA17_Chr4g0004971 32.051 156 88 4 260 398 166 320 1.58e-14 74.7
Msa0002540 MtrunA17_Chr7g0221691 31.841 201 109 6 260 434 232 430 1.97e-14 75.1
Msa0002540 MtrunA17_Chr7g0249421 35.897 156 82 4 260 398 207 361 4.65e-14 73.9
Msa0002540 MtrunA17_Chr1g0175381 26.794 209 102 5 260 417 147 355 4.73e-14 73.6
Msa0002540 MtrunA17_Chr4g0022171 31.073 177 104 4 239 398 172 347 6.78e-14 73.6
Msa0002540 MtrunA17_Chr2g0324061 32.768 177 101 4 239 398 165 340 8.18e-14 73.2
Msa0002540 MtrunA17_Chr7g0243571 32.903 155 87 4 260 398 188 341 1.09e-13 72.8
Msa0002540 MtrunA17_Chr7g0250061 27.807 187 98 5 251 403 135 318 1.81e-13 71.6
Msa0002540 MtrunA17_Chr3g0089721 30.178 169 87 4 260 397 137 305 2.30e-13 71.2
Msa0002540 MtrunA17_Chr4g0068971 32.576 132 76 4 300 421 110 238 2.63e-13 70.1
Msa0002540 MtrunA17_Chr8g0342431 35.172 145 75 5 271 398 208 350 4.02e-13 70.9
Msa0002540 MtrunA17_Chr1g0166481 30.968 155 84 4 263 415 141 274 5.43e-13 68.9
Msa0002540 MtrunA17_Chr1g0211251 27.273 165 88 3 260 392 149 313 7.53e-13 69.7
Msa0002540 MtrunA17_Chr1g0181901 25.373 201 101 5 229 380 96 296 7.62e-13 69.7
Msa0002540 MtrunA17_Chr3g0089711 29.586 169 88 4 260 397 137 305 7.94e-13 69.7
Msa0002540 MtrunA17_Chr3g0089691 29.586 169 88 4 260 397 51 219 1.16e-12 68.6
Msa0002540 MtrunA17_Chr4g0066371 27.358 212 115 7 241 414 130 340 1.23e-12 69.3
Msa0002540 MtrunA17_Chr7g0225501 32.927 164 99 6 260 412 154 317 1.94e-12 68.9
Msa0002540 MtrunA17_Chr3g0133801 29.834 181 113 5 246 412 113 293 2.60e-12 68.2
Msa0002540 MtrunA17_Chr5g0394181 33.168 202 106 11 234 415 406 598 2.94e-12 68.6
Msa0002540 MtrunA17_Chr7g0271971 30.270 185 110 7 241 412 117 295 1.33e-11 66.2
Msa0002540 MtrunA17_Chr2g0286951 27.273 209 113 8 244 414 134 341 3.59e-11 64.7
Msa0002540 MtrunA17_Chr1g0192471 27.717 184 116 5 241 412 117 295 5.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002540 AT5G53140.1 72.350 217 57 2 222 435 152 368 2.41e-103 314
Msa0002540 AT5G53140.1 50.279 179 66 6 1 164 1 171 1.57e-43 158
Msa0002540 AT5G53140.2 72.350 217 57 2 222 435 152 368 2.41e-103 314
Msa0002540 AT5G53140.2 50.279 179 66 6 1 164 1 171 1.57e-43 158
Msa0002540 AT4G31750.2 65.909 176 60 0 239 414 104 279 1.92e-78 246
Msa0002540 AT4G31750.2 54.118 85 39 0 80 164 19 103 2.21e-25 105
Msa0002540 AT4G31750.1 59.420 207 71 1 239 432 104 310 2.39e-78 246
Msa0002540 AT4G31750.1 54.118 85 39 0 80 164 19 103 2.91e-25 105
Msa0002540 AT4G31750.3 59.420 207 71 1 239 432 104 310 2.39e-78 246
Msa0002540 AT4G31750.3 54.118 85 39 0 80 164 19 103 2.91e-25 105
Msa0002540 AT5G10740.1 66.477 176 59 0 239 414 104 279 4.76e-77 244
Msa0002540 AT5G10740.1 56.098 82 36 0 83 164 22 103 8.75e-25 105
Msa0002540 AT5G10740.2 66.477 176 59 0 239 414 104 279 4.76e-77 244
Msa0002540 AT5G10740.2 56.098 82 36 0 83 164 22 103 8.75e-25 105
Msa0002540 AT5G24940.1 64.205 176 63 0 239 414 104 279 6.68e-74 239
Msa0002540 AT5G24940.1 57.831 83 35 0 82 164 21 103 2.28e-25 108
Msa0002540 AT1G43900.1 59.659 176 70 1 239 414 194 368 8.79e-70 226
Msa0002540 AT1G43900.1 55.556 72 32 0 92 163 121 192 9.56e-22 96.7
Msa0002540 AT1G78200.1 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0002540 AT1G78200.3 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0002540 AT1G78200.2 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0002540 AT1G78200.5 33.119 311 131 5 107 414 1 237 1.83e-44 155
Msa0002540 AT1G78200.4 33.119 311 131 5 107 414 1 237 1.83e-44 155
Msa0002540 AT1G34750.2 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0002540 AT1G34750.2 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0002540 AT1G34750.1 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0002540 AT1G34750.1 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0002540 AT1G34750.3 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0002540 AT1G34750.3 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0002540 AT1G22280.1 45.251 179 92 4 239 414 105 280 4.65e-41 147
Msa0002540 AT1G22280.3 45.251 179 92 4 239 414 111 286 5.14e-41 147
Msa0002540 AT2G20630.1 43.386 189 101 4 230 415 94 279 2.97e-39 143
Msa0002540 AT4G28400.3 43.386 189 101 4 230 415 76 261 5.71e-39 141
Msa0002540 AT4G28400.1 43.386 189 101 4 230 415 98 283 8.61e-39 142
Msa0002540 AT2G30020.1 44.809 183 91 4 241 416 215 394 1.52e-38 144
Msa0002540 AT1G07160.1 42.391 184 95 3 241 416 198 378 3.92e-38 142
Msa0002540 AT2G29380.1 45.349 172 72 3 260 412 190 358 5.18e-37 139
Msa0002540 AT1G72770.4 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0002540 AT1G72770.1 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0002540 AT1G72770.3 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0002540 AT2G20630.2 42.553 188 102 4 230 414 94 278 6.04e-37 137
Msa0002540 AT2G40180.1 43.243 185 94 5 239 416 207 387 4.33e-36 137
Msa0002540 AT3G15260.2 44.444 180 94 4 239 415 113 289 6.70e-36 134
Msa0002540 AT3G15260.1 44.444 180 94 4 239 415 113 289 6.70e-36 134
Msa0002540 AT1G17550.1 42.308 182 82 4 260 419 326 506 6.05e-35 136
Msa0002540 AT1G17550.2 42.308 182 82 4 260 419 326 506 6.05e-35 136
Msa0002540 AT4G26080.1 39.378 193 88 3 260 424 241 432 7.07e-35 134
Msa0002540 AT1G07430.1 54.839 124 54 2 260 382 233 355 7.15e-35 135
Msa0002540 AT5G57050.2 42.778 180 75 3 260 412 191 369 8.26e-35 133
Msa0002540 AT5G51760.2 41.709 199 90 3 244 416 185 383 1.40e-34 133
Msa0002540 AT5G51760.1 41.709 199 90 3 244 416 215 413 1.62e-34 133
Msa0002540 AT5G57050.1 42.778 180 75 3 260 412 231 409 1.90e-34 133
Msa0002540 AT5G59220.1 55.645 124 53 2 260 382 221 343 3.21e-34 132
Msa0002540 AT1G67820.2 47.917 144 71 2 239 378 151 294 4.23e-34 132
Msa0002540 AT1G67820.1 47.917 144 71 2 239 378 187 330 9.87e-34 132
Msa0002540 AT3G11410.1 54.032 124 55 2 260 382 221 343 1.30e-33 130
Msa0002540 AT2G40860.1 42.857 196 94 7 234 412 452 646 2.36e-32 130
Msa0002540 AT2G40860.4 42.857 196 94 7 234 412 354 548 2.53e-32 129
Msa0002540 AT3G51470.2 34.685 222 126 5 212 417 68 286 5.72e-32 124
Msa0002540 AT3G51470.1 34.685 222 126 5 212 417 112 330 1.75e-31 124
Msa0002540 AT2G33700.1 34.821 224 123 7 212 417 129 347 2.17e-30 121
Msa0002540 AT1G34750.4 48.951 143 65 5 241 380 108 245 2.27e-30 118
Msa0002540 AT1G34750.4 37.500 88 54 1 77 163 17 104 5.84e-11 63.2
Msa0002540 AT2G25070.1 27.548 363 201 11 89 427 18 342 4.54e-30 120
Msa0002540 AT2G25070.2 27.548 363 201 11 89 427 18 342 4.54e-30 120
Msa0002540 AT4G31860.1 28.919 370 206 12 89 436 18 352 1.89e-29 118
Msa0002540 AT2G34740.1 40.881 159 88 4 260 414 178 334 2.25e-28 115
Msa0002540 AT2G25620.1 37.766 188 98 4 241 412 170 354 8.42e-28 114
Msa0002540 AT2G25620.2 37.766 188 98 4 241 412 170 354 8.42e-28 114
Msa0002540 AT2G40860.2 40.659 182 91 6 234 398 452 633 1.08e-27 116
Msa0002540 AT3G62260.3 40.606 165 86 4 260 414 97 259 1.41e-27 111
Msa0002540 AT3G62260.1 40.606 165 86 4 260 414 186 348 8.93e-27 111
Msa0002540 AT3G62260.2 40.606 165 86 4 260 414 187 349 9.59e-27 111
Msa0002540 AT4G31860.3 30.132 302 164 10 89 378 18 284 3.42e-26 107
Msa0002540 AT4G28400.2 44.138 145 75 4 230 371 98 239 6.99e-26 105
Msa0002540 AT4G31860.2 30.375 293 157 10 89 369 18 275 4.98e-25 104
Msa0002540 AT3G17250.1 35.503 169 93 4 260 415 229 394 2.17e-23 102
Msa0002540 AT1G48040.1 35.955 178 100 4 260 426 187 361 3.23e-23 101
Msa0002540 AT1G18030.1 33.838 198 108 5 239 415 154 349 1.04e-22 99.4
Msa0002540 AT3G16800.4 39.103 156 78 4 260 398 75 230 1.30e-22 97.1
Msa0002540 AT3G16800.6 39.103 156 78 4 260 398 75 230 1.30e-22 97.1
Msa0002540 AT3G16800.2 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0002540 AT3G16800.1 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0002540 AT3G16800.3 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0002540 AT4G32950.1 34.921 189 96 7 260 424 139 324 1.06e-19 90.1
Msa0002540 AT5G59220.2 60.256 78 29 2 260 336 221 297 2.28e-19 88.6
Msa0002540 AT4G08260.1 34.857 175 92 7 244 412 48 206 2.38e-19 86.7
Msa0002540 AT4G27800.1 30.476 210 106 5 239 411 139 345 2.38e-19 89.7
Msa0002540 AT5G27930.1 33.898 177 99 4 239 398 156 331 3.54e-19 89.4
Msa0002540 AT5G27930.2 33.898 177 99 4 239 398 156 331 3.54e-19 89.4
Msa0002540 AT3G05640.2 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0002540 AT3G05640.1 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0002540 AT3G05640.3 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0002540 AT1G18030.2 34.899 149 79 3 239 371 154 300 1.34e-18 86.7
Msa0002540 AT2G40860.3 40.278 144 71 5 234 362 452 595 1.59e-18 88.6
Msa0002540 AT2G34740.3 42.241 116 61 4 260 371 174 287 5.14e-18 84.7
Msa0002540 AT2G34740.2 42.241 116 61 4 260 371 192 305 5.16e-18 85.1
Msa0002540 AT3G63340.12 24.582 419 215 14 95 432 72 470 1.87e-17 85.1
Msa0002540 AT5G36250.1 30.846 201 108 6 260 436 207 400 6.09e-17 83.2
Msa0002540 AT5G01700.1 31.797 217 122 7 224 416 76 290 6.41e-17 82.0
Msa0002540 AT3G63340.6 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0002540 AT3G63340.3 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0002540 AT3G63340.10 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0002540 AT3G63340.4 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0002540 AT3G63340.11 24.171 422 213 14 95 432 72 470 8.68e-17 83.6
Msa0002540 AT3G63340.7 24.408 422 212 14 95 432 72 470 8.97e-17 83.6
Msa0002540 AT3G63340.5 24.408 422 212 14 95 432 72 470 9.89e-17 83.6
Msa0002540 AT3G63340.1 24.408 422 212 14 95 432 72 470 9.89e-17 83.6
Msa0002540 AT3G63340.8 24.408 422 212 14 95 432 72 470 1.06e-16 83.2
Msa0002540 AT5G57050.3 53.750 80 35 2 260 338 231 309 1.23e-16 80.9
Msa0002540 AT3G17090.1 28.507 221 105 5 249 417 142 361 1.25e-16 81.6
Msa0002540 AT1G79630.2 30.918 207 118 7 229 412 121 325 1.26e-16 82.0
Msa0002540 AT1G79630.7 30.918 207 118 7 229 412 121 325 1.26e-16 82.0
Msa0002540 AT5G01700.2 31.797 217 122 7 224 416 125 339 2.25e-16 80.9
Msa0002540 AT1G16220.1 29.004 231 140 6 229 436 168 397 2.64e-16 81.3
Msa0002540 AT1G79630.6 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0002540 AT1G79630.3 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0002540 AT1G79630.4 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0002540 AT1G79630.5 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0002540 AT4G27800.2 31.073 177 86 4 239 382 139 312 4.14e-16 79.7
Msa0002540 AT4G27800.3 31.073 177 86 4 239 382 139 312 4.19e-16 79.3
Msa0002540 AT1G72770.2 54.545 77 33 2 260 335 326 401 4.67e-16 80.1
Msa0002540 AT1G72770.5 54.545 77 33 2 260 335 326 401 4.67e-16 80.1
Msa0002540 AT1G79630.1 30.918 207 118 7 229 412 191 395 5.37e-16 80.5
Msa0002540 AT1G79630.8 30.918 207 118 7 229 412 187 391 6.60e-16 80.1
Msa0002540 AT5G26010.1 36.913 149 76 4 249 380 135 282 1.17e-15 78.2
Msa0002540 AT3G55050.1 28.788 198 102 5 244 403 130 326 1.43e-15 78.6
Msa0002540 AT3G55050.2 28.788 198 102 5 244 403 130 326 1.43e-15 78.6
Msa0002540 AT5G66080.2 28.079 203 107 5 239 403 19 220 1.65e-15 77.0
Msa0002540 AT5G66080.1 28.079 203 107 5 239 403 123 324 1.93e-15 78.2
Msa0002540 AT2G05050.1 38.144 97 54 1 322 412 91 187 3.36e-15 74.3
Msa0002540 AT3G51370.2 28.571 203 106 5 239 403 35 236 4.22e-15 75.9
Msa0002540 AT3G51370.1 28.571 203 106 5 239 403 120 321 5.86e-15 76.6
Msa0002540 AT3G51370.3 28.571 203 106 5 239 403 120 321 5.86e-15 76.6
Msa0002540 AT1G68410.4 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0002540 AT1G68410.3 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0002540 AT1G68410.1 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0002540 AT1G68410.2 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0002540 AT3G02750.2 32.487 197 103 6 260 432 216 406 7.02e-15 77.0
Msa0002540 AT3G02750.1 32.487 197 103 6 260 432 216 406 7.02e-15 77.0
Msa0002540 AT3G17090.2 30.675 163 82 3 249 380 142 304 1.89e-14 74.3
Msa0002540 AT3G63340.2 32.927 164 88 6 291 432 340 503 2.05e-14 76.3
Msa0002540 AT3G27140.1 30.220 182 85 3 260 432 61 209 2.51e-14 72.8
Msa0002540 AT4G38520.2 27.083 240 117 7 234 415 117 356 2.72e-14 74.7
Msa0002540 AT4G38520.1 27.083 240 117 7 234 415 117 356 2.72e-14 74.7
Msa0002540 AT1G47380.1 29.167 192 122 5 246 423 111 302 3.38e-14 74.7
Msa0002540 AT1G09160.2 31.214 173 102 7 256 412 124 295 5.54e-14 73.9
Msa0002540 AT1G09160.1 31.214 173 102 7 256 412 124 295 5.54e-14 73.9
Msa0002540 AT5G36250.2 28.837 215 108 7 260 436 207 414 8.21e-14 73.6
Msa0002540 AT3G12620.2 26.961 204 110 5 234 399 119 321 2.10e-13 72.0
Msa0002540 AT3G12620.1 26.961 204 110 5 234 399 119 321 2.10e-13 72.0
Msa0002540 AT5G02760.1 25.322 233 118 6 239 415 113 345 2.49e-13 71.6
Msa0002540 AT1G03590.1 34.058 138 73 4 260 380 185 321 7.80e-13 70.5
Msa0002540 AT4G32950.2 38.889 126 59 5 260 368 139 263 4.31e-12 67.0
Msa0002540 AT4G03415.1 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0002540 AT4G03415.3 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0002540 AT4G03415.2 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0002540 AT1G22280.2 45.570 79 39 3 239 316 105 180 3.09e-11 62.8

Find 110 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTATTGTGATCATTTA+TGG 0.053137 1_1:+4448362 Msa0002540:three_prime_UTR
GTTTGCTATAAATAAGTTTA+TGG 0.168904 1_1:+4448415 Msa0002540:three_prime_UTR
GCATCTTGATAACTGAATTT+TGG 0.186147 1_1:-4442261 None:intergenic
GCTCTTTCTAAAACTTATTA+TGG 0.205589 1_1:+4448391 Msa0002540:three_prime_UTR
TCAAGGATCACCTGGATTTC+AGG 0.221623 1_1:-4446345 None:intergenic
CTGTGGGTATTCAAGCTTTA+GGG 0.229516 1_1:+4443689 Msa0002540:CDS
AAACACACTTATAGCCAATT+TGG 0.238676 1_1:-4444851 None:intergenic
GGCCGTTCAGTGTGCTTATT+TGG 0.250467 1_1:+4443765 Msa0002540:CDS
TTTGTTTGAATCTACTAAAA+TGG 0.257355 1_1:-4442209 None:intergenic
GCTGTGGGTATTCAAGCTTT+AGG 0.283523 1_1:+4443688 Msa0002540:CDS
TACTGCTTCAACCGCTGTTT+TGG 0.298247 1_1:+4445158 Msa0002540:CDS
TCAGGTACTTGGAGGGTTGG+AGG 0.316866 1_1:+4446261 Msa0002540:intron
TTATCTGCTGGTCAGGTACT+TGG 0.318306 1_1:+4446250 Msa0002540:intron
TTCCGCTCATCACTTCTATT+AGG 0.319364 1_1:-4445656 None:intergenic
CTAGCTGTACTAGCTTTATC+AGG 0.329502 1_1:-4448178 None:intergenic
GAGGATGATTCTGCTCGTTC+TGG 0.338595 1_1:+4442738 Msa0002540:CDS
GTGTATGATTCTAGGGTAGA+TGG 0.345251 1_1:+4442503 Msa0002540:intron
CTATTTCATTCAAGGGGTCT+AGG 0.354349 1_1:+4444994 Msa0002540:CDS
CGTCTTTATGTTGCTAATGT+TGG 0.369537 1_1:+4445189 Msa0002540:CDS
AGGGGTCTAGGGTTGGTTCA+TGG 0.373370 1_1:+4445006 Msa0002540:CDS
CTAGACCCCTTGAATGAAAT+AGG 0.374141 1_1:-4444993 None:intergenic
TTCTTGCAAGTGATGGACTC+TGG 0.377103 1_1:+4447541 Msa0002540:CDS
TTCTCTCGCACGCGCGGAAG+AGG 0.379452 1_1:+4448042 Msa0002540:CDS
ATTAACTTAAGTAACCTTGC+AGG 0.385220 1_1:+4445066 Msa0002540:CDS
CTAGCAATGTCCCGTGCATT+TGG 0.388360 1_1:+4446288 Msa0002540:CDS
TCAGGTTCTGCTACAACAAA+TGG 0.406761 1_1:-4446327 None:intergenic
TCGCGCTGCTGAGTATTTGA+AGG 0.414937 1_1:+4444780 Msa0002540:CDS
CGGAAGAGAATTGAGAATGC+TGG 0.418557 1_1:+4445674 Msa0002540:CDS
TGCTTATTTGGAATATTTGA+TGG 0.436479 1_1:+4443777 Msa0002540:CDS
CAGTTTCTTCATCTATCTCC+TGG 0.443845 1_1:-4447509 None:intergenic
TGTTAGTCCTATTTCATTCA+AGG 0.445734 1_1:+4444986 Msa0002540:CDS
GTTAGTCCTATTTCATTCAA+GGG 0.446364 1_1:+4444987 Msa0002540:CDS
ACAATAAATGCATACTCAAA+TGG 0.447235 1_1:-4444964 None:intergenic
AGGTACTTGGAGGGTTGGAG+GGG 0.452329 1_1:+4446263 Msa0002540:intron
TCTGCTGGTCAGGTACTTGG+AGG 0.462237 1_1:+4446253 Msa0002540:intron
ATTAAGACATCAACCATTGA+TGG 0.465203 1_1:+4443744 Msa0002540:CDS
GTGCTTGTTCTTGCAAGTGA+TGG 0.466824 1_1:+4447534 Msa0002540:CDS
TGTTGCCATTCAATTACGTT+CGG 0.467610 1_1:+4442568 Msa0002540:CDS
GGCAGCTGCTCGTAAGTTAA+CGG 0.470980 1_1:+4448072 Msa0002540:CDS
TATTTCATTCAAGGGGTCTA+GGG 0.472109 1_1:+4444995 Msa0002540:CDS
CAGGTACTTGGAGGGTTGGA+GGG 0.476854 1_1:+4446262 Msa0002540:intron
GACAAGAACGTATAAACAAA+TGG 0.481541 1_1:-4444922 None:intergenic
GAGCAGAATCATCCTCTTTG+TGG 0.485689 1_1:-4442731 None:intergenic
GTTATATCAAAAGCCGGAAA+AGG 0.487838 1_1:+4445225 Msa0002540:CDS
TCATTCAAGGGGTCTAGGGT+TGG 0.498128 1_1:+4444999 Msa0002540:CDS
GGAAGAGAATTGAGAATGCT+GGG 0.498423 1_1:+4445675 Msa0002540:CDS
ATTCGAAACACGAGATTAAG+AGG 0.504443 1_1:-4442367 None:intergenic
CAACAAATGGCTTCAGCATA+CGG 0.504649 1_1:-4446314 None:intergenic
GGCTTGTAGAGGCTCCAGTT+TGG 0.506243 1_1:+4448436 Msa0002540:three_prime_UTR
TCTTGCAAGTGATGGACTCT+GGG 0.506521 1_1:+4447542 Msa0002540:CDS
GCACACTGAACGGCCATCAA+TGG 0.510832 1_1:-4443757 None:intergenic
AGCAGAATCATCCTCTTTGT+GGG 0.511509 1_1:-4442730 None:intergenic
TGAGAATGAGATGAGGGTGG+AGG 0.514850 1_1:-4442176 None:intergenic
ATTGAATGGCAACAATCTCT+TGG 0.515224 1_1:-4442559 None:intergenic
GGTTCTATGTCAACAAGGGC+TGG 0.523229 1_1:+4442684 Msa0002540:CDS
ATAGGGATGATGGTTGATAC+AGG 0.529679 1_1:+4442663 Msa0002540:CDS
GAATAAGTACATAGGGATGA+TGG 0.530731 1_1:+4442653 Msa0002540:CDS
TGTAGCAGAACCTGAAATCC+AGG 0.531929 1_1:+4446335 Msa0002540:CDS
TCTCTCGCACGCGCGGAAGA+GGG 0.531984 1_1:+4448043 Msa0002540:CDS
TGCTGTTTCTCTCGCACGCG+CGG 0.535097 1_1:+4448036 Msa0002540:CDS
GCTGATATGTTTCACCTGCA+AGG 0.538951 1_1:-4445080 None:intergenic
ATGAGATGAGAATGAGATGA+GGG 0.542105 1_1:-4442182 None:intergenic
TTCCTCCGAACGTAATTGAA+TGG 0.542928 1_1:-4442573 None:intergenic
AAAGATAATTTCCGGGATGA+CGG 0.544350 1_1:+4445132 Msa0002540:CDS
TTGTGTGCTTGATTTATTGA+GGG 0.544963 1_1:+4448253 Msa0002540:intron
ATTGTGTGCTTGATTTATTG+AGG 0.552318 1_1:+4448252 Msa0002540:intron
TTGTTACTGGTGGATGCAAG+AGG 0.557429 1_1:+4442763 Msa0002540:CDS
TTAGTCCTATTTCATTCAAG+GGG 0.558305 1_1:+4444988 Msa0002540:CDS
CTGCTGGTCAGGTACTTGGA+GGG 0.558808 1_1:+4446254 Msa0002540:intron
GTGTTTAAGAATAAGTACAT+AGG 0.559274 1_1:+4442645 Msa0002540:CDS
TGTTTAAGAATAAGTACATA+GGG 0.560733 1_1:+4442646 Msa0002540:CDS
CTGGGATGTAGTACAGAATG+AGG 0.561731 1_1:+4447560 Msa0002540:CDS
AGAACTGTTATATCAAAAGC+CGG 0.562263 1_1:+4445219 Msa0002540:CDS
GAGTGACTTACATTACAAAA+CGG 0.573171 1_1:-4448341 None:intergenic
AATAAGTTTATGGCTTGTAG+AGG 0.583008 1_1:+4448425 Msa0002540:three_prime_UTR
AACAAGGGCTGGACCCTCTG+TGG 0.584711 1_1:+4442695 Msa0002540:CDS
AAGCAGTAGAACCGTCATCC+CGG 0.586100 1_1:-4445143 None:intergenic
TGGTCAGGTACTTGGAGGGT+TGG 0.587206 1_1:+4446258 Msa0002540:intron
AGATGAGAATGAGATGAGGG+TGG 0.595369 1_1:-4442179 None:intergenic
AGATAACATTACTTGTATTG+TGG 0.598689 1_1:+4448120 Msa0002540:CDS
CTTGTCAAATCTGACATCAT+CGG 0.601544 1_1:+4444939 Msa0002540:CDS
TGCCATTCAATTACGTTCGG+AGG 0.605951 1_1:+4442571 Msa0002540:CDS
CATACGGTTGCCAAATGCAC+GGG 0.607533 1_1:-4446298 None:intergenic
GCATACGGTTGCCAAATGCA+CGG 0.608451 1_1:-4446299 None:intergenic
TTCCAAATAAGCACACTGAA+CGG 0.610019 1_1:-4443767 None:intergenic
TGTGGGTATTCAAGCTTTAG+GGG 0.620144 1_1:+4443690 Msa0002540:CDS
ACGCGCGGAAGAGGGAGCTG+AGG 0.624807 1_1:+4448051 Msa0002540:CDS
AAGGGCTGGACCCTCTGTGG+AGG 0.633314 1_1:+4442698 Msa0002540:CDS
AATATCATAGAAATCCTCCA+TGG 0.634352 1_1:-4443724 None:intergenic
CAACATTAGCAACATAAAGA+CGG 0.638225 1_1:-4445188 None:intergenic
AAGAGTCTGCACATGCATGA+TGG 0.638768 1_1:+4448276 Msa0002540:three_prime_UTR
GAAGAGAATTGAGAATGCTG+GGG 0.645480 1_1:+4445676 Msa0002540:CDS
GTGGGTATTCAAGCTTTAGG+GGG 0.647356 1_1:+4443691 Msa0002540:CDS
GATGAGATGAGAATGAGATG+AGG 0.647967 1_1:-4442183 None:intergenic
GAAGATGAAAGACTTAGCTG+TGG 0.649418 1_1:+4443672 Msa0002540:CDS
ATACAGGTTCTATGTCAACA+AGG 0.649790 1_1:+4442679 Msa0002540:CDS
AAGATGAAAGACTTAGCTGT+GGG 0.649895 1_1:+4443673 Msa0002540:CDS
TAATTGCGAAAGAAATGTGA+AGG 0.649934 1_1:-4442301 None:intergenic
AGGTGAAACATATCAGCAGA+CGG 0.662640 1_1:+4445086 Msa0002540:CDS
GGATACTGTGTCCCACAAAG+AGG 0.664416 1_1:+4442719 Msa0002540:CDS
ATTCTAGGGTAGATGGTATG+CGG 0.672838 1_1:+4442510 Msa0002540:intron
ATATTCCATGCAGGTCATGG+TGG 0.673781 1_1:+4444754 Msa0002540:intron
GGAGATAGATGAAGAAACTG+AGG 0.679288 1_1:+4447512 Msa0002540:CDS
AACCTAATAGAAGTGATGAG+CGG 0.688453 1_1:+4445654 Msa0002540:CDS
TACAGGTTCTATGTCAACAA+GGG 0.688710 1_1:+4442680 Msa0002540:CDS
GACACAGTATCCTCCACAGA+GGG 0.693531 1_1:-4442708 None:intergenic
AAGAGAATTGAGAATGCTGG+GGG 0.703336 1_1:+4445677 Msa0002540:CDS
GGGGAAGAGAGTGACCATGG+AGG 0.741569 1_1:+4443710 Msa0002540:CDS
ACGGTTATCAACCAAAACAG+CGG 0.747863 1_1:-4445169 None:intergenic
GGACACAGTATCCTCCACAG+AGG 0.792073 1_1:-4442709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTGATTATTTTAAATA+TGG + chr1_1:4442808-4442827 Msa0002540:intron 10.0%
!!! TTTACATTAGATTTTTATAT+TGG + chr1_1:4442925-4442944 Msa0002540:intron 10.0%
!!! TTACATTAGATTTTTATATT+GGG + chr1_1:4442926-4442945 Msa0002540:intron 10.0%
!! TTTGTAATTAAAAGTAAAAT+AGG + chr1_1:4446511-4446530 Msa0002540:intron 10.0%
!!! AGTTGTATATAATTTTTTAT+CGG + chr1_1:4446849-4446868 Msa0002540:intron 10.0%
!!! TGTTGTATATAATTTTTTAT+TGG + chr1_1:4446884-4446903 Msa0002540:intron 10.0%
!! ATATATTAAAATGGCTTATA+AGG + chr1_1:4442959-4442978 Msa0002540:intron 15.0%
!! ATAGTAATCTTAAAAATTCA+TGG + chr1_1:4443908-4443927 Msa0002540:intron 15.0%
!!! TTATTGTTTTGATTTTTCTT+TGG - chr1_1:4444199-4444218 None:intergenic 15.0%
!! ATGTAATTTGATTAAGAAAT+GGG + chr1_1:4446193-4446212 Msa0002540:intron 15.0%
!!! GTTGTATATAATTTTTTATC+GGG + chr1_1:4446850-4446869 Msa0002540:intron 15.0%
!! TTGAAAATTCATTAATTTCA+CGG - chr1_1:4446954-4446973 None:intergenic 15.0%
!! TGATAAAAAAAGTTAATTTC+AGG + chr1_1:4447062-4447081 Msa0002540:intron 15.0%
!! GATAAAAAAAGTTAATTTCA+GGG + chr1_1:4447063-4447082 Msa0002540:intron 15.0%
!! ATTTAATCCCTAATATAATA+GGG - chr1_1:4447130-4447149 None:intergenic 15.0%
!! TATTTAATCCCTAATATAAT+AGG - chr1_1:4447131-4447150 None:intergenic 15.0%
!! TCATTAGTAACAAATATAAT+TGG + chr1_1:4447662-4447681 Msa0002540:intron 15.0%
!!! AAGAAAAAACACATTTTATT+TGG - chr1_1:4447905-4447924 None:intergenic 15.0%
!! TTTGTTTGAATCTACTAAAA+TGG - chr1_1:4442212-4442231 None:intergenic 20.0%
!! AATGCGAAAATTAATAAGAT+CGG - chr1_1:4442437-4442456 None:intergenic 20.0%
!!! TAATTTTTGTGTATGATTCT+AGG + chr1_1:4442495-4442514 Msa0002540:intron 20.0%
!!! AATTTTTGTGTATGATTCTA+GGG + chr1_1:4442496-4442515 Msa0002540:intron 20.0%
!! TGTTTAAGAATAAGTACATA+GGG + chr1_1:4442646-4442665 Msa0002540:CDS 20.0%
!! CGAACTGATATATATTAAAA+TGG + chr1_1:4442950-4442969 Msa0002540:intron 20.0%
!! TCGAAAAAAAAAAATCTTAC+AGG - chr1_1:4443156-4443175 None:intergenic 20.0%
!!! AGAATCAATTTTGCAATTAT+TGG + chr1_1:4443177-4443196 Msa0002540:intron 20.0%
!!! AATTTTGCAATTATTGGTTT+TGG + chr1_1:4443183-4443202 Msa0002540:intron 20.0%
!!! AGGATTTTTTTTAACACATA+TGG + chr1_1:4443259-4443278 Msa0002540:intron 20.0%
!!! GGATTTTTTTTAACACATAT+GGG + chr1_1:4443260-4443279 Msa0002540:intron 20.0%
!!! GATTTTTTTTAACACATATG+GGG + chr1_1:4443261-4443280 Msa0002540:intron 20.0%
!!! AAACAGTTTTAGTTTAAATG+AGG + chr1_1:4443423-4443442 Msa0002540:intron 20.0%
!! TACTAAAATATCACTACTAT+TGG - chr1_1:4443537-4443556 None:intergenic 20.0%
!!! ATAGTAGTGATATTTTAGTA+AGG + chr1_1:4443537-4443556 Msa0002540:intron 20.0%
!!! TAGTAGTGATATTTTAGTAA+GGG + chr1_1:4443538-4443557 Msa0002540:intron 20.0%
!! TTGTTTACGTATATTACTAA+TGG + chr1_1:4443970-4443989 Msa0002540:intron 20.0%
!!! GCAACTTATTATTTAGTTTT+TGG + chr1_1:4443992-4444011 Msa0002540:intron 20.0%
!!! AATCTAAATATTACCTTTTC+CGG - chr1_1:4445241-4445260 None:intergenic 20.0%
!! TGAAGAAATCAAAATATAGT+AGG - chr1_1:4445265-4445284 None:intergenic 20.0%
!!! TATTATTGAGGATATGTTTT+TGG + chr1_1:4445761-4445780 Msa0002540:intron 20.0%
!! GATGTAATTTGATTAAGAAA+TGG + chr1_1:4446192-4446211 Msa0002540:intron 20.0%
!! AGATTGCATAACTTTAATTA+AGG - chr1_1:4446383-4446402 None:intergenic 20.0%
!! CAATCTATTATTTGATTGTA+TGG + chr1_1:4446397-4446416 Msa0002540:intron 20.0%
!! AAGTACTTATAAATATAGTG+TGG + chr1_1:4446546-4446565 Msa0002540:intron 20.0%
!! AGTACTTATAAATATAGTGT+GGG + chr1_1:4446547-4446566 Msa0002540:intron 20.0%
!!! ATATAATTTTTTATCGGGTA+AGG + chr1_1:4446855-4446874 Msa0002540:intron 20.0%
!! CTATAGTTTCAATGTTAAAA+CGG - chr1_1:4446914-4446933 None:intergenic 20.0%
!!! ATAATGGATATACAATTACA+TGG - chr1_1:4446983-4447002 None:intergenic 20.0%
!!! AACAGTTTCAAATACATTTT+TGG + chr1_1:4447231-4447250 Msa0002540:intron 20.0%
!!! TTATTTCCTCATATATTTTC+AGG + chr1_1:4447485-4447504 Msa0002540:intron 20.0%
!!! TTCATCTTCATTTAAAGTAT+TGG - chr1_1:4447808-4447827 None:intergenic 20.0%
!!! GTTTGCTATAAATAAGTTTA+TGG + chr1_1:4448415-4448434 Msa0002540:three_prime_UTR 20.0%
! GTGTTTAAGAATAAGTACAT+AGG + chr1_1:4442645-4442664 Msa0002540:CDS 25.0%
! AAAATGGCTTATAAGGTTAT+TGG + chr1_1:4442966-4442985 Msa0002540:intron 25.0%
! CTAAATTTACAATGACCAAA+TGG - chr1_1:4443070-4443089 None:intergenic 25.0%
! CATTTGGTCATTGTAAATTT+AGG + chr1_1:4443068-4443087 Msa0002540:intron 25.0%
!! TAAATTTAGGATCGAAGTAT+TGG + chr1_1:4443081-4443100 Msa0002540:intron 25.0%
!! GAAATATCTGTTTTCTTCTT+GGG + chr1_1:4443205-4443224 Msa0002540:intron 25.0%
!! AAATATCTGTTTTCTTCTTG+GGG + chr1_1:4443206-4443225 Msa0002540:intron 25.0%
! TAATACAAATCAGTTTGGTA+AGG - chr1_1:4443374-4443393 None:intergenic 25.0%
!!! GTTGATAATACAAATCAGTT+TGG - chr1_1:4443379-4443398 None:intergenic 25.0%
! ATTATCAACTTACCAAATGA+CGG + chr1_1:4443390-4443409 Msa0002540:intron 25.0%
!! TATGTCGCTGAATTTTTAAT+TGG + chr1_1:4443645-4443664 Msa0002540:intron 25.0%
!! TGCTTATTTGGAATATTTGA+TGG + chr1_1:4443777-4443796 Msa0002540:CDS 25.0%
! GACTCATGAAAAAATAAGAT+TGG + chr1_1:4443930-4443949 Msa0002540:intron 25.0%
! AAAAAATAAGATTGGACAAC+TGG + chr1_1:4443938-4443957 Msa0002540:intron 25.0%
!!! TTCCTATTTTTTCTTTGCTT+GGG - chr1_1:4444019-4444038 None:intergenic 25.0%
!!! TTTCCTATTTTTTCTTTGCT+TGG - chr1_1:4444020-4444039 None:intergenic 25.0%
! GAAAATAAGATATGAGAAGA+GGG - chr1_1:4444472-4444491 None:intergenic 25.0%
!!! ATTTTCCATTTTTCAATGCA+CGG + chr1_1:4444486-4444505 Msa0002540:intron 25.0%
! TTTATTTGTCTACAGTGAAA+TGG + chr1_1:4444584-4444603 Msa0002540:intron 25.0%
! TTATTTGTCTACAGTGAAAT+GGG + chr1_1:4444585-4444604 Msa0002540:intron 25.0%
!!! TATTTTAGCTTAACGAAACT+AGG + chr1_1:4444615-4444634 Msa0002540:intron 25.0%
!!! ATTTTAGCTTAACGAAACTA+GGG + chr1_1:4444616-4444635 Msa0002540:intron 25.0%
! ACAATAAATGCATACTCAAA+TGG - chr1_1:4444967-4444986 None:intergenic 25.0%
!! ACTCTGAAAAAGATAATTTC+CGG + chr1_1:4445124-4445143 Msa0002540:CDS 25.0%
!!! ATGAGTTCGTTTTTATGAAA+AGG - chr1_1:4445373-4445392 None:intergenic 25.0%
!! TTCACATTATAAGTTTTCTC+TGG - chr1_1:4445411-4445430 None:intergenic 25.0%
! TAACTACATAAGATATCACT+TGG + chr1_1:4445458-4445477 Msa0002540:intron 25.0%
! TCTAGATTGTTCTATTATTG+AGG + chr1_1:4445749-4445768 Msa0002540:intron 25.0%
! GATGTGTATCAATTTATCAT+TGG + chr1_1:4445824-4445843 Msa0002540:intron 25.0%
!!! AAGTTTTTTGATGATGACAT+CGG + chr1_1:4445863-4445882 Msa0002540:intron 25.0%
! TACAAAGTAACAATGAGAAT+AGG + chr1_1:4446057-4446076 Msa0002540:intron 25.0%
! AACTTTAATTAAGGTACACA+AGG - chr1_1:4446374-4446393 None:intergenic 25.0%
! GTACTTATAAATATAGTGTG+GGG + chr1_1:4446548-4446567 Msa0002540:intron 25.0%
!!! CGTTTTAACATTGAAACTAT+AGG + chr1_1:4446912-4446931 Msa0002540:intron 25.0%
! AACATTGAAACTATAGGAAT+TGG + chr1_1:4446918-4446937 Msa0002540:intron 25.0%
! ACTATAGGAATTGGTTAATT+CGG + chr1_1:4446927-4446946 Msa0002540:intron 25.0%
!! AGTTTGAAATTTCGCAATAT+CGG + chr1_1:4447089-4447108 Msa0002540:intron 25.0%
! ATAATAGGGATCAGTTAATT+TGG - chr1_1:4447116-4447135 None:intergenic 25.0%
! TAACTGATCCCTATTATATT+AGG + chr1_1:4447119-4447138 Msa0002540:intron 25.0%
! AACTGATCCCTATTATATTA+GGG + chr1_1:4447120-4447139 Msa0002540:intron 25.0%
!!! TAGTTTTTTTTAGATCCATG+TGG + chr1_1:4447161-4447180 Msa0002540:intron 25.0%
!!! TTTTGAAGTTCTCGTAAATA+TGG - chr1_1:4447194-4447213 None:intergenic 25.0%
!!! ATTTGTTTTCTTGCTAAAGT+GGG - chr1_1:4447327-4447346 None:intergenic 25.0%
!!! TATTTGTTTTCTTGCTAAAG+TGG - chr1_1:4447328-4447347 None:intergenic 25.0%
! AATCGTTAAATATTACATGG+GGG - chr1_1:4447785-4447804 None:intergenic 25.0%
! GAATCGTTAAATATTACATG+GGG - chr1_1:4447786-4447805 None:intergenic 25.0%
! GGAATCGTTAAATATTACAT+GGG - chr1_1:4447787-4447806 None:intergenic 25.0%
! TGGAATCGTTAAATATTACA+TGG - chr1_1:4447788-4447807 None:intergenic 25.0%
! ACACAATAAATTGAGGTTAA+TGG - chr1_1:4447854-4447873 None:intergenic 25.0%
! TTAACCTCAATTTATTGTGT+CGG + chr1_1:4447854-4447873 Msa0002540:intron 25.0%
! GGTTTAAAAATAAATCATGC+CGG - chr1_1:4447884-4447903 None:intergenic 25.0%
! AGAGAAAAATAAACACAACA+TGG - chr1_1:4447967-4447986 None:intergenic 25.0%
!!! GTTGTGTTTATTTTTCTCTT+TGG + chr1_1:4447968-4447987 Msa0002540:intron 25.0%
! AGATAACATTACTTGTATTG+TGG + chr1_1:4448120-4448139 Msa0002540:CDS 25.0%
! TCTTGTATTGTGATCATTTA+TGG + chr1_1:4448362-4448381 Msa0002540:three_prime_UTR 25.0%
!!! GCTCTTTCTAAAACTTATTA+TGG + chr1_1:4448391-4448410 Msa0002540:three_prime_UTR 25.0%
! ACAAAACAAAAATACCAAAC+TGG - chr1_1:4448453-4448472 None:intergenic 25.0%
!! GCATCTTGATAACTGAATTT+TGG - chr1_1:4442264-4442283 None:intergenic 30.0%
TAATTGCGAAAGAAATGTGA+AGG - chr1_1:4442304-4442323 None:intergenic 30.0%
!! AGCTTTATCTCTTTTCGATA+TGG + chr1_1:4443014-4443033 Msa0002540:intron 30.0%
! GGAAATATCTGTTTTCTTCT+TGG + chr1_1:4443204-4443223 Msa0002540:intron 30.0%
AACACATATGGGGTTAAAAA+TGG + chr1_1:4443271-4443290 Msa0002540:intron 30.0%
TTATCAACTTACCAAATGAC+GGG + chr1_1:4443391-4443410 Msa0002540:intron 30.0%
!! ATTTTAGTAAGGGCTTATAG+TGG + chr1_1:4443548-4443567 Msa0002540:intron 30.0%
TACTTGATCGCAATATAGAT+AGG - chr1_1:4443620-4443639 None:intergenic 30.0%
AATATCATAGAAATCCTCCA+TGG - chr1_1:4443727-4443746 None:intergenic 30.0%
ATTAAGACATCAACCATTGA+TGG + chr1_1:4443744-4443763 Msa0002540:CDS 30.0%
!! TTAAATCTTTCTAGTTCTCC+AGG + chr1_1:4443832-4443851 Msa0002540:intron 30.0%
! CATTTTTCATATGAAATGCC+TGG - chr1_1:4443853-4443872 None:intergenic 30.0%
!!! TCCTATTTTTTCTTTGCTTG+GGG - chr1_1:4444018-4444037 None:intergenic 30.0%
TATTAAATGCTATGCACACT+TGG - chr1_1:4444055-4444074 None:intergenic 30.0%
GTATAACTCACAAACTGTTT+CGG - chr1_1:4444083-4444102 None:intergenic 30.0%
TTGTGAGTTATACATGTTTG+TGG + chr1_1:4444090-4444109 Msa0002540:intron 30.0%
! TTTCTTTGGAAGATCAACAT+AGG - chr1_1:4444185-4444204 None:intergenic 30.0%
! AGAAAGATCAAAACTGATTC+AGG - chr1_1:4444256-4444275 None:intergenic 30.0%
! ACATTTTGTTGAAAGCTCAT+GGG - chr1_1:4444349-4444368 None:intergenic 30.0%
! TACATTTTGTTGAAAGCTCA+TGG - chr1_1:4444350-4444369 None:intergenic 30.0%
GGAAAATAAGATATGAGAAG+AGG - chr1_1:4444473-4444492 None:intergenic 30.0%
CTAACATTGCAAATATTCGA+AGG + chr1_1:4444515-4444534 Msa0002540:intron 30.0%
TAGGGAAGAAAATATGACAT+TGG + chr1_1:4444634-4444653 Msa0002540:intron 30.0%
AGATATATCAATGACCACAA+AGG + chr1_1:4444689-4444708 Msa0002540:intron 30.0%
AACTCGTTTAGAAATTCTCA+AGG - chr1_1:4444730-4444749 None:intergenic 30.0%
! GAGTTTTTAATATTCCATGC+AGG + chr1_1:4444745-4444764 Msa0002540:intron 30.0%
TTGGTATCTGTCAAAAACTT+CGG - chr1_1:4444835-4444854 None:intergenic 30.0%
! GTTTTTGACAGATACCAAAT+TGG + chr1_1:4444837-4444856 Msa0002540:CDS 30.0%
AAACACACTTATAGCCAATT+TGG - chr1_1:4444854-4444873 None:intergenic 30.0%
GACAAGAACGTATAAACAAA+TGG - chr1_1:4444925-4444944 None:intergenic 30.0%
TGTTAGTCCTATTTCATTCA+AGG + chr1_1:4444986-4445005 Msa0002540:CDS 30.0%
GTTAGTCCTATTTCATTCAA+GGG + chr1_1:4444987-4445006 Msa0002540:CDS 30.0%
TTAGTCCTATTTCATTCAAG+GGG + chr1_1:4444988-4445007 Msa0002540:CDS 30.0%
!! TCATTTTTCAGTCTGTTATG+TGG + chr1_1:4445037-4445056 Msa0002540:CDS 30.0%
ATTAACTTAAGTAACCTTGC+AGG + chr1_1:4445066-4445085 Msa0002540:CDS 30.0%
! CTCTGAAAAAGATAATTTCC+GGG + chr1_1:4445125-4445144 Msa0002540:CDS 30.0%
CAACATTAGCAACATAAAGA+CGG - chr1_1:4445191-4445210 None:intergenic 30.0%
AGAACTGTTATATCAAAAGC+CGG + chr1_1:4445219-4445238 Msa0002540:CDS 30.0%
! GTCTAGCTCACTAATAATAT+TGG + chr1_1:4445298-4445317 Msa0002540:intron 30.0%
CTCACTAATAATATTGGTAG+TGG + chr1_1:4445304-4445323 Msa0002540:intron 30.0%
! AAAGCATTTCTAACAAGACA+AGG + chr1_1:4445486-4445505 Msa0002540:intron 30.0%
AAGCATTTCTAACAAGACAA+GGG + chr1_1:4445487-4445506 Msa0002540:intron 30.0%
! CATTTTGTGCAAGATACAAT+GGG + chr1_1:4445786-4445805 Msa0002540:intron 30.0%
! ATTTTGTGCAAGATACAATG+GGG + chr1_1:4445787-4445806 Msa0002540:intron 30.0%
! ATGCATGAAGTATTATCTTC+TGG + chr1_1:4445918-4445937 Msa0002540:intron 30.0%
!!! CAATGCAGTTTACACTTTTT+TGG - chr1_1:4445982-4446001 None:intergenic 30.0%
CTTAATCAAATTACATCCCT+TGG - chr1_1:4446189-4446208 None:intergenic 30.0%
CATTATCTACATTCACTGTT+AGG - chr1_1:4446462-4446481 None:intergenic 30.0%
! TGTATGGGTTATTCAGTATT+AGG + chr1_1:4446681-4446700 Msa0002540:intron 30.0%
TAGTTTCAATGTTAAAACGG+TGG - chr1_1:4446911-4446930 None:intergenic 30.0%
AGAAAAGACTAGTACGATAA+TGG - chr1_1:4446999-4447018 None:intergenic 30.0%
GTCCTTCAAATTATCCTAAA+TGG + chr1_1:4447032-4447051 Msa0002540:intron 30.0%
! GTCCATTTAGGATAATTTGA+AGG - chr1_1:4447037-4447056 None:intergenic 30.0%
TTTATCACATGAGTCCATTT+AGG - chr1_1:4447049-4447068 None:intergenic 30.0%
AAATATGGACAAAATCCACA+TGG - chr1_1:4447179-4447198 None:intergenic 30.0%
!! TTTGTTTTCTTGCTAAAGTG+GGG - chr1_1:4447326-4447345 None:intergenic 30.0%
ATGATGTGGATAACCTTAAA+GGG + chr1_1:4447397-4447416 Msa0002540:intron 30.0%
TTGCTTTCACATACATAATC+AGG + chr1_1:4447619-4447638 Msa0002540:intron 30.0%
ATGAAGATGTATATTTCAGC+TGG + chr1_1:4447711-4447730 Msa0002540:intron 30.0%
!! GTTCTAAAAGTGTGAAAACT+CGG - chr1_1:4447744-4447763 None:intergenic 30.0%
AGATAAGTACTCAACATTCT+TGG + chr1_1:4447827-4447846 Msa0002540:intron 30.0%
!!! TTATTTTTCTCTTTGGTGCT+CGG + chr1_1:4447975-4447994 Msa0002540:intron 30.0%
ATTGTGTGCTTGATTTATTG+AGG + chr1_1:4448252-4448271 Msa0002540:intron 30.0%
TTGTGTGCTTGATTTATTGA+GGG + chr1_1:4448253-4448272 Msa0002540:intron 30.0%
GAGTGACTTACATTACAAAA+CGG - chr1_1:4448344-4448363 None:intergenic 30.0%
! AATAAGTTTATGGCTTGTAG+AGG + chr1_1:4448425-4448444 Msa0002540:three_prime_UTR 30.0%
ATGAGATGAGAATGAGATGA+GGG - chr1_1:4442185-4442204 None:intergenic 35.0%
ATTCGAAACACGAGATTAAG+AGG - chr1_1:4442370-4442389 None:intergenic 35.0%
ATTGAATGGCAACAATCTCT+TGG - chr1_1:4442562-4442581 None:intergenic 35.0%
TGTTGCCATTCAATTACGTT+CGG + chr1_1:4442568-4442587 Msa0002540:CDS 35.0%
GAATAAGTACATAGGGATGA+TGG + chr1_1:4442653-4442672 Msa0002540:CDS 35.0%
ATACAGGTTCTATGTCAACA+AGG + chr1_1:4442679-4442698 Msa0002540:CDS 35.0%
TACAGGTTCTATGTCAACAA+GGG + chr1_1:4442680-4442699 Msa0002540:CDS 35.0%
AACACGCTACTTAACTATCT+CGG - chr1_1:4442894-4442913 None:intergenic 35.0%
GCAACATTTACATCTCCATT+TGG + chr1_1:4443052-4443071 Msa0002540:intron 35.0%
ACATATGGGGTTAAAAATGG+AGG + chr1_1:4443274-4443293 Msa0002540:intron 35.0%
CATATGGGGTTAAAAATGGA+GGG + chr1_1:4443275-4443294 Msa0002540:intron 35.0%
ATATGGGGTTAAAAATGGAG+GGG + chr1_1:4443276-4443295 Msa0002540:intron 35.0%
AAAAATGGAGGGGTTATTCA+TGG + chr1_1:4443286-4443305 Msa0002540:intron 35.0%
GGAGGGAAGTAAAAAAAACA+TGG - chr1_1:4443353-4443372 None:intergenic 35.0%
ACAAATCAGTTTGGTAAGGA+GGG - chr1_1:4443370-4443389 None:intergenic 35.0%
TACAAATCAGTTTGGTAAGG+AGG - chr1_1:4443371-4443390 None:intergenic 35.0%
AAGATGAAAGACTTAGCTGT+GGG + chr1_1:4443673-4443692 Msa0002540:CDS 35.0%
TTCCAAATAAGCACACTGAA+CGG - chr1_1:4443770-4443789 None:intergenic 35.0%
! TAAAGCAAGCTTTTCTGCTT+AGG - chr1_1:4444144-4444163 None:intergenic 35.0%
ACAGAAGCTTCATAAAGACA+GGG - chr1_1:4444287-4444306 None:intergenic 35.0%
TACAGAAGCTTCATAAAGAC+AGG - chr1_1:4444288-4444307 None:intergenic 35.0%
! CATTTTGTTGAAAGCTCATG+GGG - chr1_1:4444348-4444367 None:intergenic 35.0%
GTTGCGAAAATTGCTAAATC+TGG + chr1_1:4444391-4444410 Msa0002540:intron 35.0%
TGGAACTTAATTCAAGAAGC+AGG - chr1_1:4444435-4444454 None:intergenic 35.0%
! ATATGACATTGGCTGCTATT+TGG + chr1_1:4444645-4444664 Msa0002540:intron 35.0%
! TATGACATTGGCTGCTATTT+GGG + chr1_1:4444646-4444665 Msa0002540:intron 35.0%
TTAATATTCCATGCAGGTCA+TGG + chr1_1:4444751-4444770 Msa0002540:intron 35.0%
CTTGTCAAATCTGACATCAT+CGG + chr1_1:4444939-4444958 Msa0002540:CDS 35.0%
TATTTCATTCAAGGGGTCTA+GGG + chr1_1:4444995-4445014 Msa0002540:CDS 35.0%
AAAGATAATTTCCGGGATGA+CGG + chr1_1:4445132-4445151 Msa0002540:CDS 35.0%
CGTCTTTATGTTGCTAATGT+TGG + chr1_1:4445189-4445208 Msa0002540:CDS 35.0%
GTTATATCAAAAGCCGGAAA+AGG + chr1_1:4445225-4445244 Msa0002540:CDS 35.0%
AACCTAATAGAAGTGATGAG+CGG + chr1_1:4445654-4445673 Msa0002540:CDS 35.0%
! GCATTTTGTGCAAGATACAA+TGG + chr1_1:4445785-4445804 Msa0002540:intron 35.0%
TTTATCATTGGTCGAAGATG+AGG + chr1_1:4445836-4445855 Msa0002540:intron 35.0%
AATTCCAAGGCAGAGATATA+TGG - chr1_1:4446156-4446175 None:intergenic 35.0%
ATCAAATTACATCCCTTGGA+TGG - chr1_1:4446185-4446204 None:intergenic 35.0%
ATTCACTTGTGTTTATCTGC+TGG + chr1_1:4446238-4446257 Msa0002540:intron 35.0%
TAAGGTACACAAGGTAATCA+AGG - chr1_1:4446365-4446384 None:intergenic 35.0%
CTACATTCACTGTTAGGATT+TGG - chr1_1:4446456-4446475 None:intergenic 35.0%
ATAAATATAGTGTGGGGTTG+AGG + chr1_1:4446554-4446573 Msa0002540:intron 35.0%
! GACTTGAGAATTTTGCAACT+TGG + chr1_1:4446576-4446595 Msa0002540:intron 35.0%
TTATCACAGCTAATGAGAGT+AGG + chr1_1:4446634-4446653 Msa0002540:intron 35.0%
TATCACAGCTAATGAGAGTA+GGG + chr1_1:4446635-4446654 Msa0002540:intron 35.0%
AATAACCCATACATGACTAG+CGG - chr1_1:4446674-4446693 None:intergenic 35.0%
!!! ATTTTTTATCGGGTAAGGCT+TGG + chr1_1:4446860-4446879 Msa0002540:intron 35.0%
AATCTCACTTCCTATACTAG+GGG - chr1_1:4447266-4447285 None:intergenic 35.0%
CAATCTCACTTCCTATACTA+GGG - chr1_1:4447267-4447286 None:intergenic 35.0%
TCAATCTCACTTCCTATACT+AGG - chr1_1:4447268-4447287 None:intergenic 35.0%
!!! TTTTCCATTGATGATGCAGA+AGG + chr1_1:4447357-4447376 Msa0002540:intron 35.0%
CATCATGGAAAGCTAAGTTA+AGG - chr1_1:4447383-4447402 None:intergenic 35.0%
! TAACTTAGCTTTCCATGATG+TGG + chr1_1:4447383-4447402 Msa0002540:intron 35.0%
!! CTTTAAGGTTATCCACATCA+TGG - chr1_1:4447398-4447417 None:intergenic 35.0%
CATGATGTGGATAACCTTAA+AGG + chr1_1:4447396-4447415 Msa0002540:intron 35.0%
AGTACAGAATGAGGTAAGAT+CGG + chr1_1:4447569-4447588 Msa0002540:intron 35.0%
TTTCACATACATAATCAGGC+AGG + chr1_1:4447623-4447642 Msa0002540:intron 35.0%
AAGATGTATATTTCAGCTGG+TGG + chr1_1:4447714-4447733 Msa0002540:intron 35.0%
TTTGCCGACACAATAAATTG+AGG - chr1_1:4447861-4447880 None:intergenic 35.0%
! AATTTATTGTGTCGGCAAAC+CGG + chr1_1:4447862-4447881 Msa0002540:intron 35.0%
!!! TATTTTTCTCTTTGGTGCTC+GGG + chr1_1:4447976-4447995 Msa0002540:intron 35.0%
GATGAGATGAGAATGAGATG+AGG - chr1_1:4442186-4442205 None:intergenic 40.0%
!! GTGTATGATTCTAGGGTAGA+TGG + chr1_1:4442503-4442522 Msa0002540:intron 40.0%
!! ATTCTAGGGTAGATGGTATG+CGG + chr1_1:4442510-4442529 Msa0002540:intron 40.0%
TTCCTCCGAACGTAATTGAA+TGG - chr1_1:4442576-4442595 None:intergenic 40.0%
! ATAGGGATGATGGTTGATAC+AGG + chr1_1:4442663-4442682 Msa0002540:CDS 40.0%
AGCAGAATCATCCTCTTTGT+GGG - chr1_1:4442733-4442752 None:intergenic 40.0%
!! TCTGCTTGCTATGTTTGTTG+AGG + chr1_1:4442839-4442858 Msa0002540:intron 40.0%
TCTTTAATGTTGCGCGTGTT+TGG + chr1_1:4443120-4443139 Msa0002540:intron 40.0%
CTTTAATGTTGCGCGTGTTT+GGG + chr1_1:4443121-4443140 Msa0002540:intron 40.0%
CTTCTTGGGGTTCTTATCTT+TGG + chr1_1:4443219-4443238 Msa0002540:intron 40.0%
! GGTTCTTATCTTTGGAGGTT+TGG + chr1_1:4443227-4443246 Msa0002540:intron 40.0%
!! TGGAGGTTTGGTTATTTCTG+AGG + chr1_1:4443239-4443258 Msa0002540:intron 40.0%
! TACCAAATGACGGGAGTTAA+TGG + chr1_1:4443400-4443419 Msa0002540:intron 40.0%
TTCCATTAACTCCCGTCATT+TGG - chr1_1:4443405-4443424 None:intergenic 40.0%
! TGTATCCGACTTGATCTAGT+GGG - chr1_1:4443483-4443502 None:intergenic 40.0%
! ATGTATCCGACTTGATCTAG+TGG - chr1_1:4443484-4443503 None:intergenic 40.0%
! AAGGGCTTATAGTGGAAGAA+TGG + chr1_1:4443556-4443575 Msa0002540:intron 40.0%
! ATAGTGGAAGAATGGTTGTG+TGG + chr1_1:4443564-4443583 Msa0002540:intron 40.0%
GAAGATGAAAGACTTAGCTG+TGG + chr1_1:4443672-4443691 Msa0002540:CDS 40.0%
CTGTGGGTATTCAAGCTTTA+GGG + chr1_1:4443689-4443708 Msa0002540:CDS 40.0%
! TGTGGGTATTCAAGCTTTAG+GGG + chr1_1:4443690-4443709 Msa0002540:CDS 40.0%
TAACATTCTAGCAAGCAACG+AGG - chr1_1:4443815-4443834 None:intergenic 40.0%
GCCCCAAGCAAAGAAAAAAT+AGG + chr1_1:4444014-4444033 Msa0002540:intron 40.0%
! ATGACATTGGCTGCTATTTG+GGG + chr1_1:4444647-4444666 Msa0002540:intron 40.0%
AATTCTCAAGGCAACAGAAC+AGG - chr1_1:4444718-4444737 None:intergenic 40.0%
CTAGACCCCTTGAATGAAAT+AGG - chr1_1:4444996-4445015 None:intergenic 40.0%
CTATTTCATTCAAGGGGTCT+AGG + chr1_1:4444994-4445013 Msa0002540:CDS 40.0%
AGGTGAAACATATCAGCAGA+CGG + chr1_1:4445086-4445105 Msa0002540:CDS 40.0%
ACGGTTATCAACCAAAACAG+CGG - chr1_1:4445172-4445191 None:intergenic 40.0%
TTCCGCTCATCACTTCTATT+AGG - chr1_1:4445659-4445678 None:intergenic 40.0%
GGAAGAGAATTGAGAATGCT+GGG + chr1_1:4445675-4445694 Msa0002540:CDS 40.0%
GAAGAGAATTGAGAATGCTG+GGG + chr1_1:4445676-4445695 Msa0002540:CDS 40.0%
AAGAGAATTGAGAATGCTGG+GGG + chr1_1:4445677-4445696 Msa0002540:CDS 40.0%
TGGATGGACAGAAAATTCCA+AGG - chr1_1:4446169-4446188 None:intergenic 40.0%
! TGGAATTTTCTGTCCATCCA+AGG + chr1_1:4446169-4446188 Msa0002540:intron 40.0%
! GGAATTTTCTGTCCATCCAA+GGG + chr1_1:4446170-4446189 Msa0002540:intron 40.0%
CAACAAATGGCTTCAGCATA+CGG - chr1_1:4446317-4446336 None:intergenic 40.0%
TCAGGTTCTGCTACAACAAA+TGG - chr1_1:4446330-4446349 None:intergenic 40.0%
AGAAGTGACAAGTGAGAGAA+AGG + chr1_1:4446600-4446619 Msa0002540:intron 40.0%
ATCACAGCTAATGAGAGTAG+GGG + chr1_1:4446636-4446655 Msa0002540:intron 40.0%
ATCAACTTCTGGCCATTTGT+CGG - chr1_1:4446734-4446753 None:intergenic 40.0%
! ACAAATGGCCAGAAGTTGAT+AGG + chr1_1:4446734-4446753 Msa0002540:intron 40.0%
TGAACAAGCCTATCAACTTC+TGG - chr1_1:4446745-4446764 None:intergenic 40.0%
! TTTTCTTGCTAAAGTGGGGA+GGG - chr1_1:4447322-4447341 None:intergenic 40.0%
ACACAGATGATGTCCCTTTA+AGG - chr1_1:4447413-4447432 None:intergenic 40.0%
CCTGGTCCTGAAAATATATG+AGG - chr1_1:4447494-4447513 None:intergenic 40.0%
!! CCTCATATATTTTCAGGACC+AGG + chr1_1:4447491-4447510 Msa0002540:intron 40.0%
CAGTTTCTTCATCTATCTCC+TGG - chr1_1:4447512-4447531 None:intergenic 40.0%
GGAGATAGATGAAGAAACTG+AGG + chr1_1:4447512-4447531 Msa0002540:CDS 40.0%
TGAAAGCAACAAGCAATGCA+GGG - chr1_1:4447608-4447627 None:intergenic 40.0%
GGGGAATTGACAATAGGATT+AGG - chr1_1:4447766-4447785 None:intergenic 40.0%
TACATGGGGGAATTGACAAT+AGG - chr1_1:4447772-4447791 None:intergenic 40.0%
AGAAACAGCATCCTGATCAA+AGG - chr1_1:4448026-4448045 None:intergenic 40.0%
!! CTAGCTGTACTAGCTTTATC+AGG - chr1_1:4448181-4448200 None:intergenic 40.0%
AGATGAGAATGAGATGAGGG+TGG - chr1_1:4442182-4442201 None:intergenic 45.0%
!!! TGCGGAATTTTGATTCGAGC+TGG + chr1_1:4442528-4442547 Msa0002540:CDS 45.0%
TGCCATTCAATTACGTTCGG+AGG + chr1_1:4442571-4442590 Msa0002540:CDS 45.0%
GAGCAGAATCATCCTCTTTG+TGG - chr1_1:4442734-4442753 None:intergenic 45.0%
!!! GCTCGTTCTGGTTTTGTTAC+TGG + chr1_1:4442750-4442769 Msa0002540:CDS 45.0%
!!! CGTTCTGGTTTTGTTACTGG+TGG + chr1_1:4442753-4442772 Msa0002540:CDS 45.0%
! TTGTTACTGGTGGATGCAAG+AGG + chr1_1:4442763-4442782 Msa0002540:CDS 45.0%
ATCTCGGCAACAAAGATGAG+AGG - chr1_1:4442878-4442897 None:intergenic 45.0%
!! AGGATCGAAGTATTGGCTGT+TGG + chr1_1:4443088-4443107 Msa0002540:intron 45.0%
!! GGATCGAAGTATTGGCTGTT+GGG + chr1_1:4443089-4443108 Msa0002540:intron 45.0%
!! GATCGAAGTATTGGCTGTTG+GGG + chr1_1:4443090-4443109 Msa0002540:intron 45.0%
!! ATCGAAGTATTGGCTGTTGG+GGG + chr1_1:4443091-4443110 Msa0002540:intron 45.0%
CTTGGGGTTCTTATCTTTGG+AGG + chr1_1:4443222-4443241 Msa0002540:intron 45.0%
GCTGTGGGTATTCAAGCTTT+AGG + chr1_1:4443688-4443707 Msa0002540:CDS 45.0%
!! GTGGGTATTCAAGCTTTAGG+GGG + chr1_1:4443691-4443710 Msa0002540:CDS 45.0%
GGTTGTATGTCATGTTCCTG+TGG + chr1_1:4444111-4444130 Msa0002540:intron 45.0%
CTGCTTAGGATTTACACCAC+AGG - chr1_1:4444130-4444149 None:intergenic 45.0%
TTCAAGAAGCAGGCATGTCA+GGG - chr1_1:4444425-4444444 None:intergenic 45.0%
ATTCAAGAAGCAGGCATGTC+AGG - chr1_1:4444426-4444445 None:intergenic 45.0%
CCTTGCCGTGCATTGAAAAA+TGG - chr1_1:4444494-4444513 None:intergenic 45.0%
!! CCATTTTTCAATGCACGGCA+AGG + chr1_1:4444491-4444510 Msa0002540:intron 45.0%
AACAGAACAGGTGACCTTTG+TGG - chr1_1:4444706-4444725 None:intergenic 45.0%
ATATTCCATGCAGGTCATGG+TGG + chr1_1:4444754-4444773 Msa0002540:intron 45.0%
GCTGATATGTTTCACCTGCA+AGG - chr1_1:4445083-4445102 None:intergenic 45.0%
! TACTGCTTCAACCGCTGTTT+TGG + chr1_1:4445158-4445177 Msa0002540:CDS 45.0%
CGGAAGAGAATTGAGAATGC+TGG + chr1_1:4445674-4445693 Msa0002540:CDS 45.0%
TGTGCAAGATACAATGGGGT+TGG + chr1_1:4445791-4445810 Msa0002540:intron 45.0%
GATGACATCGGAAGTTTGTG+CGG + chr1_1:4445875-4445894 Msa0002540:intron 45.0%
ATGACATCGGAAGTTTGTGC+GGG + chr1_1:4445876-4445895 Msa0002540:intron 45.0%
TGCTCCATATATCTCTGCCT+TGG + chr1_1:4446149-4446168 Msa0002540:intron 45.0%
CTTGTGTTTATCTGCTGGTC+AGG + chr1_1:4446243-4446262 Msa0002540:intron 45.0%
TTATCTGCTGGTCAGGTACT+TGG + chr1_1:4446250-4446269 Msa0002540:intron 45.0%
TGTAGCAGAACCTGAAATCC+AGG + chr1_1:4446335-4446354 Msa0002540:CDS 45.0%
TCAAGGATCACCTGGATTTC+AGG - chr1_1:4446348-4446367 None:intergenic 45.0%
CAAGGTAATCAAGGATCACC+TGG - chr1_1:4446356-4446375 None:intergenic 45.0%
! AATGTGCCGCTAGTCATGTA+TGG + chr1_1:4446665-4446684 Msa0002540:intron 45.0%
! ATGTGCCGCTAGTCATGTAT+GGG + chr1_1:4446666-4446685 Msa0002540:intron 45.0%
ACCAAAAGACCACCGACAAA+TGG + chr1_1:4446719-4446738 Msa0002540:intron 45.0%
TAGATCATACACGCATGTGC+TGG - chr1_1:4446790-4446809 None:intergenic 45.0%
ACTTCCTATACTAGGGGACA+TGG - chr1_1:4447260-4447279 None:intergenic 45.0%
! GTTTTCTTGCTAAAGTGGGG+AGG - chr1_1:4447323-4447342 None:intergenic 45.0%
AAGGCCTTCTGCATCATCAA+TGG - chr1_1:4447364-4447383 None:intergenic 45.0%
GTGCTTGTTCTTGCAAGTGA+TGG + chr1_1:4447534-4447553 Msa0002540:CDS 45.0%
!! TTCTTGCAAGTGATGGACTC+TGG + chr1_1:4447541-4447560 Msa0002540:CDS 45.0%
!! TCTTGCAAGTGATGGACTCT+GGG + chr1_1:4447542-4447561 Msa0002540:CDS 45.0%
CTGGGATGTAGTACAGAATG+AGG + chr1_1:4447560-4447579 Msa0002540:CDS 45.0%
GTGAAAGCAACAAGCAATGC+AGG - chr1_1:4447609-4447628 None:intergenic 45.0%
TCCTTACTTCTGTGCTAGAG+CGG + chr1_1:4447924-4447943 Msa0002540:intron 45.0%
CACTTTGCCATCCTTTGATC+AGG + chr1_1:4448012-4448031 Msa0002540:intron 45.0%
ACAGCATCCTGATCAAAGGA+TGG - chr1_1:4448022-4448041 None:intergenic 45.0%
!!! ACGGAAGCTGCTTTTAATCG+TGG + chr1_1:4448091-4448110 Msa0002540:CDS 45.0%
AAGAGTCTGCACATGCATGA+TGG + chr1_1:4448276-4448295 Msa0002540:three_prime_UTR 45.0%
TGAGAATGAGATGAGGGTGG+AGG - chr1_1:4442179-4442198 None:intergenic 50.0%
GGTTCTATGTCAACAAGGGC+TGG + chr1_1:4442684-4442703 Msa0002540:CDS 50.0%
GACACAGTATCCTCCACAGA+GGG - chr1_1:4442711-4442730 None:intergenic 50.0%
GGATACTGTGTCCCACAAAG+AGG + chr1_1:4442719-4442738 Msa0002540:CDS 50.0%
GAGGATGATTCTGCTCGTTC+TGG + chr1_1:4442738-4442757 Msa0002540:CDS 50.0%
TGATCTAGTGGGAAGGGCTA+TGG - chr1_1:4443472-4443491 None:intergenic 50.0%
! CCGACTTGATCTAGTGGGAA+GGG - chr1_1:4443478-4443497 None:intergenic 50.0%
CCCTTCCCACTAGATCAAGT+CGG + chr1_1:4443475-4443494 Msa0002540:intron 50.0%
! TCCGACTTGATCTAGTGGGA+AGG - chr1_1:4443479-4443498 None:intergenic 50.0%
GGCCGTTCAGTGTGCTTATT+TGG + chr1_1:4443765-4443784 Msa0002540:CDS 50.0%
ATTCTAGCAAGCAACGAGGC+TGG - chr1_1:4443811-4443830 None:intergenic 50.0%
!! AGAAGAGGGCGTTGAGGATT+TGG - chr1_1:4444458-4444477 None:intergenic 50.0%
!! GATATGAGAAGAGGGCGTTG+AGG - chr1_1:4444464-4444483 None:intergenic 50.0%
TCGCGCTGCTGAGTATTTGA+AGG + chr1_1:4444780-4444799 Msa0002540:CDS 50.0%
! TCATTCAAGGGGTCTAGGGT+TGG + chr1_1:4444999-4445018 Msa0002540:CDS 50.0%
AAGCAGTAGAACCGTCATCC+CGG - chr1_1:4445146-4445165 None:intergenic 50.0%
GGTTTCCTTGCCTGCTCTTT+GGG + chr1_1:4445508-4445527 Msa0002540:intron 50.0%
AAGAACCCAAAGAGCAGGCA+AGG - chr1_1:4445516-4445535 None:intergenic 50.0%
AACGCAAGAACCCAAAGAGC+AGG - chr1_1:4445521-4445540 None:intergenic 50.0%
TGTCATGTGGGCAGGTAACT+TGG + chr1_1:4445703-4445722 Msa0002540:intron 50.0%
CTAGCAATGTCCCGTGCATT+TGG + chr1_1:4446288-4446307 Msa0002540:CDS 50.0%
CATACGGTTGCCAAATGCAC+GGG - chr1_1:4446301-4446320 None:intergenic 50.0%
GCATACGGTTGCCAAATGCA+CGG - chr1_1:4446302-4446321 None:intergenic 50.0%
! GCCATTTGTCGGTGGTCTTT+TGG - chr1_1:4446723-4446742 None:intergenic 50.0%
AACTTCTGGCCATTTGTCGG+TGG - chr1_1:4446731-4446750 None:intergenic 50.0%
GAACTGGAGCGATAGCGATT+TGG - chr1_1:4446768-4446787 None:intergenic 50.0%
ATACACGCATGTGCTGGAAC+TGG - chr1_1:4446784-4446803 None:intergenic 50.0%
GAAGCCATGTCCCCTAGTAT+AGG + chr1_1:4447253-4447272 Msa0002540:intron 50.0%
TCCGCTCTAGCACAGAAGTA+AGG - chr1_1:4447928-4447947 None:intergenic 50.0%
GGCAGCTGCTCGTAAGTTAA+CGG + chr1_1:4448072-4448091 Msa0002540:CDS 50.0%
GGACACAGTATCCTCCACAG+AGG - chr1_1:4442712-4442731 None:intergenic 55.0%
TAGGGGGAAGAGAGTGACCA+TGG + chr1_1:4443707-4443726 Msa0002540:CDS 55.0%
GCACACTGAACGGCCATCAA+TGG - chr1_1:4443760-4443779 None:intergenic 55.0%
!! AGAGGGCGTTGAGGATTTGG+TGG - chr1_1:4444455-4444474 None:intergenic 55.0%
GAGAACCACCATGACCTGCA+TGG - chr1_1:4444762-4444781 None:intergenic 55.0%
!! AGGGGTCTAGGGTTGGTTCA+TGG + chr1_1:4445006-4445025 Msa0002540:CDS 55.0%
GGGTTTCCTTGCCTGCTCTT+TGG + chr1_1:4445507-4445526 Msa0002540:intron 55.0%
!! ATGCTGGGGGTGTTGTCATG+TGG + chr1_1:4445690-4445709 Msa0002540:CDS 55.0%
!! TGCTGGGGGTGTTGTCATGT+GGG + chr1_1:4445691-4445710 Msa0002540:CDS 55.0%
TCTGCTGGTCAGGTACTTGG+AGG + chr1_1:4446253-4446272 Msa0002540:intron 55.0%
CTGCTGGTCAGGTACTTGGA+GGG + chr1_1:4446254-4446273 Msa0002540:intron 55.0%
TGGTCAGGTACTTGGAGGGT+TGG + chr1_1:4446258-4446277 Msa0002540:intron 55.0%
TCAGGTACTTGGAGGGTTGG+AGG + chr1_1:4446261-4446280 Msa0002540:intron 55.0%
CAGGTACTTGGAGGGTTGGA+GGG + chr1_1:4446262-4446281 Msa0002540:intron 55.0%
AGGTACTTGGAGGGTTGGAG+GGG + chr1_1:4446263-4446282 Msa0002540:intron 55.0%
CAAGCAATGCAGGGCTGAGA+AGG - chr1_1:4447599-4447618 None:intergenic 55.0%
GGCTTGTAGAGGCTCCAGTT+TGG + chr1_1:4448436-4448455 Msa0002540:three_prime_UTR 55.0%
AACAAGGGCTGGACCCTCTG+TGG + chr1_1:4442695-4442714 Msa0002540:CDS 60.0%
!! GTATTGGCTGTTGGGGGTCG+TGG + chr1_1:4443097-4443116 Msa0002540:intron 60.0%
GGGGAAGAGAGTGACCATGG+AGG + chr1_1:4443710-4443729 Msa0002540:CDS 60.0%
!! TGCTGTTTCTCTCGCACGCG+CGG + chr1_1:4448036-4448055 Msa0002540:CDS 60.0%
AAGGGCTGGACCCTCTGTGG+AGG + chr1_1:4442698-4442717 Msa0002540:CDS 65.0%
!! GGGGGTGTTGTCATGTGGGC+AGG + chr1_1:4445695-4445714 Msa0002540:CDS 65.0%
TTCTCTCGCACGCGCGGAAG+AGG + chr1_1:4448042-4448061 Msa0002540:CDS 65.0%
TCTCTCGCACGCGCGGAAGA+GGG + chr1_1:4448043-4448062 Msa0002540:CDS 65.0%
ACGCGCGGAAGAGGGAGCTG+AGG + chr1_1:4448051-4448070 Msa0002540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4442132 4448510 4442132 ID=Msa0002540;Name=Msa0002540
chr1_1 mRNA 4442132 4448510 4442132 ID=Msa0002540-mRNA-1;Parent=Msa0002540;Name=Msa0002540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=289|1|1|1|0.75|0.44|9|263|438
chr1_1 exon 4442132 4442415 4442132 ID=Msa0002540-mRNA-1:exon:1377;Parent=Msa0002540-mRNA-1
chr1_1 exon 4442517 4442784 4442517 ID=Msa0002540-mRNA-1:exon:1378;Parent=Msa0002540-mRNA-1
chr1_1 exon 4443671 4443798 4443671 ID=Msa0002540-mRNA-1:exon:1379;Parent=Msa0002540-mRNA-1
chr1_1 exon 4444767 4445246 4444767 ID=Msa0002540-mRNA-1:exon:1380;Parent=Msa0002540-mRNA-1
chr1_1 exon 4445630 4445716 4445630 ID=Msa0002540-mRNA-1:exon:1381;Parent=Msa0002540-mRNA-1
chr1_1 exon 4446265 4446356 4446265 ID=Msa0002540-mRNA-1:exon:1382;Parent=Msa0002540-mRNA-1
chr1_1 exon 4447507 4447581 4447507 ID=Msa0002540-mRNA-1:exon:1383;Parent=Msa0002540-mRNA-1
chr1_1 exon 4448034 4448233 4448034 ID=Msa0002540-mRNA-1:exon:1384;Parent=Msa0002540-mRNA-1
chr1_1 exon 4448256 4448510 4448256 ID=Msa0002540-mRNA-1:exon:1385;Parent=Msa0002540-mRNA-1
chr1_1 five_prime_UTR 4442132 4442415 4442132 ID=Msa0002540-mRNA-1:five_prime_utr;Parent=Msa0002540-mRNA-1
chr1_1 five_prime_UTR 4442517 4442521 4442517 ID=Msa0002540-mRNA-1:five_prime_utr;Parent=Msa0002540-mRNA-1
chr1_1 CDS 4442522 4442784 4442522 ID=Msa0002540-mRNA-1:cds;Parent=Msa0002540-mRNA-1
chr1_1 CDS 4443671 4443798 4443671 ID=Msa0002540-mRNA-1:cds;Parent=Msa0002540-mRNA-1
chr1_1 CDS 4444767 4445246 4444767 ID=Msa0002540-mRNA-1:cds;Parent=Msa0002540-mRNA-1
chr1_1 CDS 4445630 4445716 4445630 ID=Msa0002540-mRNA-1:cds;Parent=Msa0002540-mRNA-1
chr1_1 CDS 4446265 4446356 4446265 ID=Msa0002540-mRNA-1:cds;Parent=Msa0002540-mRNA-1
chr1_1 CDS 4447507 4447581 4447507 ID=Msa0002540-mRNA-1:cds;Parent=Msa0002540-mRNA-1
chr1_1 CDS 4448034 4448225 4448034 ID=Msa0002540-mRNA-1:cds;Parent=Msa0002540-mRNA-1
chr1_1 three_prime_UTR 4448226 4448233 4448226 ID=Msa0002540-mRNA-1:three_prime_utr;Parent=Msa0002540-mRNA-1
chr1_1 three_prime_UTR 4448256 4448510 4448256 ID=Msa0002540-mRNA-1:three_prime_utr;Parent=Msa0002540-mRNA-1
Gene Sequence

>Msa0002540

ATGGTATGCGGAATTTTGATTCGAGCTGGAATTTTGACCAAGAGATTGTTGCCATTCAATTACGTTCGGAGGAAGTGTTTGCAAAGAGTTTTTGTTGTTCATTCACAATTTGTTGCGAATCGCGTGTTTAAGAATAAGTACATAGGGATGATGGTTGATACAGGTTCTATGTCAACAAGGGCTGGACCCTCTGTGGAGGATACTGTGTCCCACAAAGAGGATGATTCTGCTCGTTCTGGTTTTGTTACTGGTGGATGCAAGAGTGAAGATGAAAGACTTAGCTGTGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAGGATTTCTATGATATTAAGACATCAACCATTGATGGCCGTTCAGTGTGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGCGCTGCTGAGTATTTGAAGGATCATCTTTTTGAGAATCTCATGAAGCATCCGAAGTTTTTGACAGATACCAAATTGGCTATAAGTGTGTTTGAATTTCACTTATTATTTCTTGTAATATTGAAGACATGTCACTTTTTACCATTTGTTTATACGTTCTTGTCAAATCTGACATCATCGGAACCATTTGAGTATGCATTTATTGTGTTAGTCCTATTTCATTCAAGGGGTCTAGGGTTGGTTCATGGAGTGCTTTTCATTTTTCAGTCTGTTATGTGGATGTTTATTAACTTAAGTAACCTTGCAGGTGAAACATATCAGCAGACGGATGCTGAGTTTTTGAACTCTGAAAAAGATAATTTCCGGGATGACGGTTCTACTGCTTCAACCGCTGTTTTGGTTGATAACCGTCTTTATGTTGCTAATGTTGGAGATTCTAGAACTGTTATATCAAAAGCCGGAAAAGCAATTGCTCTCTCTGAAGATCATAAACCTAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCCCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCAGAACCTGAAATCCAGGACCAGGAGATAGATGAAGAAACTGAGGTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAGGATGCTGTTTCTCTCGCACGCGCGGAAGAGGGAGCTGAGGCAGCTGCTCGTAAGTTAACGGAAGCTGCTTTTAATCGTGGTAGTGCAGATAACATTACTTGTATTGTGGTACGATTCAATCATGAAAAAAGACACGCAGCTAATCCTGATAAAGCTAGTACAGCTAGCAGTCAGCATGAGCAGAGACAATGA
Protein sequence

>Msa0002540

MVCGILIRAGILTKRLLPFNYVRRKCLQRVFVVHSQFVANRVFKNKYIGMMVDTGSMSTRAGPSVEDTVSHKEDDSARSGFVTGGCKSEDERLSCGYSSFRGKRVTMEDFYDIKTSTIDGRSVCLFGIFDGHGGSRAAEYLKDHLFENLMKHPKFLTDTKLAISVFEFHLLFLVILKTCHFLPFVYTFLSNLTSSEPFEYAFIVLVLFHSRGLGLVHGVLFIFQSVMWMFINLSNLAGETYQQTDAEFLNSEKDNFRDDGSTASTAVLVDNRLYVANVGDSRTVISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEIDEETEVLVLASDGLWDVVQNEDAVSLARAEEGAEAAARKLTEAAFNRGSADNITCIVVRFNHEKRHAANPDKASTASSQHEQRQ*