Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021810 | XP_039682488.1 | 99.083 | 109 | 1 | 0 | 1 | 109 | 509 | 617 | 5.98e-66 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa0021810 | 0.804071 | 2.575146e-49 | -8.615850e-47 |
| Msa0016670 | Msa0021810 | 0.830051 | 3.651683e-55 | -8.615850e-47 |
| Msa0021810 | Msa0029710 | 0.802698 | 4.958740e-49 | -8.615850e-47 |
| Msa0021810 | Msa0032840 | -0.856714 | 2.668878e-62 | -8.615850e-47 |
| Msa0021810 | Msa0041620 | 0.817618 | 3.003201e-52 | -8.615850e-47 |
| Msa0021810 | Msa0046100 | 0.801954 | 7.055164e-49 | -8.615850e-47 |
| Msa0021810 | Msa0053570 | 0.815818 | 7.609162e-52 | -8.615850e-47 |
| Msa0021810 | Msa0073670 | 0.800929 | 1.144364e-48 | -8.615850e-47 |
| Msa0021810 | Msa0074320 | 0.817432 | 3.307355e-52 | -8.615850e-47 |
| Msa0021810 | Msa0077200 | 0.827776 | 1.297826e-54 | -8.615850e-47 |
| Msa0021810 | Msa0090590 | 0.803985 | 2.684460e-49 | -8.615850e-47 |
| Msa0021810 | Msa0096670 | 0.801211 | 1.002157e-48 | -8.615850e-47 |
| Msa0021810 | Msa0099190 | 0.824747 | 6.825250e-54 | -8.615850e-47 |
| Msa0021810 | Msa0105420 | 0.805359 | 1.386611e-49 | -8.615850e-47 |
| Msa0021810 | Msa0110970 | 0.839182 | 1.846089e-57 | -8.615850e-47 |
| Msa0021810 | Msa0114540 | -0.843703 | 1.190230e-58 | -8.615850e-47 |
| Msa0021810 | Msa0124340 | 0.825648 | 4.181087e-54 | -8.615850e-47 |
| Msa0021810 | Msa0124990 | 0.820171 | 7.897595e-53 | -8.615850e-47 |
| Msa0021810 | Msa0143430 | 0.809498 | 1.836570e-50 | -8.615850e-47 |
| Msa0021810 | Msa0169690 | 0.807595 | 4.682074e-50 | -8.615850e-47 |
| Msa0021810 | Msa0172960 | -0.835985 | 1.219816e-56 | -8.615850e-47 |
| Msa0021810 | Msa0183830 | 0.810531 | 1.100309e-50 | -8.615850e-47 |
| Msa0021810 | Msa0186890 | 0.807726 | 4.390201e-50 | -8.615850e-47 |
| Msa0021810 | Msa0187690 | 0.815054 | 1.125371e-51 | -8.615850e-47 |
| Msa0021810 | Msa0192510 | 0.816740 | 4.733016e-52 | -8.615850e-47 |
| Msa0021810 | Msa0193890 | 0.800093 | 1.693944e-48 | -8.615850e-47 |
| Msa0021810 | Msa0222920 | 0.848458 | 6.050937e-60 | -8.615850e-47 |
| Msa0021810 | Msa0223250 | 0.801340 | 9.431619e-49 | -8.615850e-47 |
| Msa0021810 | Msa0230550 | -0.854154 | 1.486948e-61 | -8.615850e-47 |
| Msa0021810 | Msa0241800 | 0.815598 | 8.518474e-52 | -8.615850e-47 |
| Msa0021810 | Msa0242680 | 0.837491 | 5.038806e-57 | -8.615850e-47 |
| Msa0021810 | Msa0259560 | 0.803876 | 2.828124e-49 | -8.615850e-47 |
| Msa0021810 | Msa0264350 | 0.829554 | 4.822892e-55 | -8.615850e-47 |
| Msa0021810 | Msa0280900 | 0.808738 | 2.672952e-50 | -8.615850e-47 |
| Msa0021810 | Msa0294390 | 0.831650 | 1.479768e-55 | -8.615850e-47 |
| Msa0021810 | Msa0302450 | 0.829464 | 5.074577e-55 | -8.615850e-47 |
| Msa0021810 | Msa0306710 | 0.800430 | 1.446304e-48 | -8.615850e-47 |
| Msa0021810 | Msa0320100 | 0.816266 | 6.041319e-52 | -8.615850e-47 |
| Msa0021810 | Msa0332920 | 0.840388 | 8.963155e-58 | -8.615850e-47 |
| Msa0021810 | Msa0334350 | 0.830073 | 3.606879e-55 | -8.615850e-47 |
| Msa0021810 | Msa0335040 | 0.817218 | 3.695663e-52 | -8.615850e-47 |
| Msa0021810 | Msa0355270 | 0.835693 | 1.446770e-56 | -8.615850e-47 |
| Msa0021810 | Msa0380040 | 0.802516 | 5.407492e-49 | -8.615850e-47 |
| Msa0021810 | Msa0402330 | 0.835412 | 1.703994e-56 | -8.615850e-47 |
| Msa0021810 | Msa0410500 | 0.817757 | 2.794594e-52 | -8.615850e-47 |
| Msa0021810 | Msa0413450 | 0.803518 | 3.355835e-49 | -8.615850e-47 |
| Msa0021810 | Msa0414950 | -0.836120 | 1.127018e-56 | -8.615850e-47 |
| Msa0021810 | Msa0416400 | 0.802829 | 4.658113e-49 | -8.615850e-47 |
| Msa0021810 | Msa0419820 | 0.811443 | 6.981694e-51 | -8.615850e-47 |
| Msa0021810 | Msa0422850 | 0.814010 | 1.915318e-51 | -8.615850e-47 |
| Msa0021810 | Msa0422930 | 0.808620 | 2.832145e-50 | -8.615850e-47 |
| Msa0021810 | Msa0423040 | 0.845396 | 4.167844e-59 | -8.615850e-47 |
| Msa0021810 | Msa0424920 | 0.800299 | 1.538171e-48 | -8.615850e-47 |
| Msa0021810 | Msa0425010 | 0.803846 | 2.867956e-49 | -8.615850e-47 |
| Msa0021810 | Msa0429290 | 0.809786 | 1.592706e-50 | -8.615850e-47 |
| Msa0021810 | Msa0441130 | 0.813569 | 2.395559e-51 | -8.615850e-47 |
| Msa0021810 | Msa0461720 | 0.807829 | 4.175871e-50 | -8.615850e-47 |
| Msa0021810 | Msa0469910 | -0.818855 | 1.576273e-52 | -8.615850e-47 |
| Msa0021810 | Msa0474950 | 0.801914 | 7.190091e-49 | -8.615850e-47 |
| Msa0021810 | Msa0475580 | 0.815535 | 8.794584e-52 | -8.615850e-47 |
| Msa0021810 | Msa0480320 | 0.802360 | 5.820482e-49 | -8.615850e-47 |
| Msa0021810 | Msa0507680 | 0.802800 | 4.724751e-49 | -8.615850e-47 |
| Msa0021810 | Msa0508590 | 0.802777 | 4.774985e-49 | -8.615850e-47 |
| Msa0021810 | Msa0508630 | 0.806024 | 1.005448e-49 | -8.615850e-47 |
| Msa0021810 | Msa0516320 | 0.817540 | 3.127490e-52 | -8.615850e-47 |
| Msa0021810 | Msa0519220 | 0.804380 | 2.221390e-49 | -8.615850e-47 |
| Msa0021810 | Msa0521880 | 0.808848 | 2.531420e-50 | -8.615850e-47 |
| Msa0021810 | Msa0541860 | 0.805209 | 1.490917e-49 | -8.615850e-47 |
| Msa0021810 | Msa0544830 | 0.830065 | 3.621202e-55 | -8.615850e-47 |
| Msa0021810 | Msa0574890 | 0.802708 | 4.935733e-49 | -8.615850e-47 |
| Msa0021810 | Msa0591770 | 0.803205 | 3.895566e-49 | -8.615850e-47 |
| Msa0021810 | Msa0609450 | 0.806236 | 9.071724e-50 | -8.615850e-47 |
| Msa0021810 | Msa0623080 | 0.804945 | 1.693134e-49 | -8.615850e-47 |
| Msa0021810 | Msa0623700 | 0.817745 | 2.812184e-52 | -8.615850e-47 |
| Msa0021810 | Msa0625530 | -0.804580 | 2.017815e-49 | -8.615850e-47 |
| Msa0021810 | Msa0647130 | 0.806955 | 6.398674e-50 | -8.615850e-47 |
| Msa0021810 | Msa0648520 | 0.804855 | 1.768295e-49 | -8.615850e-47 |
| Msa0021810 | Msa0650090 | 0.807968 | 3.901123e-50 | -8.615850e-47 |
| Msa0021810 | Msa0657790 | 0.815022 | 1.143616e-51 | -8.615850e-47 |
| Msa0021810 | Msa0680240 | 0.821711 | 3.491750e-53 | -8.615850e-47 |
| Msa0021810 | Msa0689010 | 0.811789 | 5.872520e-51 | -8.615850e-47 |
| Msa0021810 | Msa0692080 | 0.807738 | 4.365314e-50 | -8.615850e-47 |
| Msa0021810 | Msa0702340 | 0.820264 | 7.517745e-53 | -8.615850e-47 |
| Msa0021810 | Msa0702590 | 0.808398 | 3.158385e-50 | -8.615850e-47 |
| Msa0021810 | Msa0702660 | 0.823530 | 1.318086e-53 | -8.615850e-47 |
| Msa0021810 | Msa0703230 | 0.809473 | 1.860047e-50 | -8.615850e-47 |
| Msa0021810 | Msa0718740 | 0.811415 | 7.080171e-51 | -8.615850e-47 |
| Msa0021810 | Msa0725250 | 0.815565 | 8.662497e-52 | -8.615850e-47 |
| Msa0021810 | Msa0759030 | 0.804764 | 1.846751e-49 | -8.615850e-47 |
| Msa0021810 | Msa0760380 | 0.846784 | 1.747164e-59 | -8.615850e-47 |
| Msa0021810 | Msa0778320 | 0.847392 | 1.190372e-59 | -8.615850e-47 |
| Msa0021810 | Msa0797750 | 0.808687 | 2.740677e-50 | -8.615850e-47 |
| Msa0021810 | Msa0814320 | 0.800235 | 1.585279e-48 | -8.615850e-47 |
| Msa0021810 | Msa0824640 | 0.801137 | 1.037853e-48 | -8.615850e-47 |
| Msa0021810 | Msa0837660 | 0.824651 | 7.190124e-54 | -8.615850e-47 |
| Msa0021810 | Msa0840260 | 0.807564 | 4.753880e-50 | -8.615850e-47 |
| Msa0021810 | Msa0844240 | 0.811228 | 7.774347e-51 | -8.615850e-47 |
| Msa0021810 | Msa0850960 | 0.816813 | 4.557225e-52 | -8.615850e-47 |
| Msa0021810 | Msa0863370 | 0.802628 | 5.126212e-49 | -8.615850e-47 |
| Msa0021810 | Msa0864010 | 0.811218 | 7.816045e-51 | -8.615850e-47 |
| Msa0021810 | Msa0896970 | 0.803346 | 3.642121e-49 | -8.615850e-47 |
| Msa0021810 | Msa0930780 | 0.821889 | 3.175871e-53 | -8.615850e-47 |
| Msa0021810 | Msa0937670 | 0.807931 | 3.971603e-50 | -8.615850e-47 |
| Msa0021810 | Msa1008060 | -0.807756 | 4.326593e-50 | -8.615850e-47 |
| Msa0021810 | Msa1012700 | 0.825569 | 4.363324e-54 | -8.615850e-47 |
| Msa0021810 | Msa1012810 | 0.810878 | 9.258832e-51 | -8.615850e-47 |
| Msa0021810 | Msa1023400 | 0.805969 | 1.032548e-49 | -8.615850e-47 |
| Msa0021810 | Msa1037920 | 0.803015 | 4.263788e-49 | -8.615850e-47 |
| Msa0021810 | Msa1040120 | 0.825424 | 4.724470e-54 | -8.615850e-47 |
| Msa0021810 | Msa1040830 | 0.801799 | 7.594365e-49 | -8.615850e-47 |
| Msa0021810 | Msa1054240 | 0.801566 | 8.476427e-49 | -8.615850e-47 |
| Msa0021810 | Msa1082700 | 0.843968 | 1.011173e-58 | -8.615850e-47 |
| Msa0021810 | Msa1094420 | 0.835042 | 2.112213e-56 | -8.615850e-47 |
| Msa0021810 | Msa1097640 | 0.808056 | 3.734770e-50 | -8.615850e-47 |
| Msa0021810 | Msa1111110 | 0.807287 | 5.441175e-50 | -8.615850e-47 |
| Msa0021810 | Msa1120530 | 0.802072 | 6.673240e-49 | -8.615850e-47 |
| Msa0021810 | Msa1127830 | 0.805118 | 1.557392e-49 | -8.615850e-47 |
| Msa0021810 | Msa1139810 | 0.818194 | 2.225986e-52 | -8.615850e-47 |
| Msa0021810 | Msa1147570 | 0.806830 | 6.797551e-50 | -8.615850e-47 |
| Msa0021810 | Msa1157750 | 0.836913 | 7.081421e-57 | -8.615850e-47 |
| Msa0021810 | Msa1174010 | 0.801238 | 9.894634e-49 | -8.615850e-47 |
| Msa0021810 | Msa1179940 | 0.801358 | 9.349912e-49 | -8.615850e-47 |
| Msa0021810 | Msa1185540 | 0.816916 | 4.321044e-52 | -8.615850e-47 |
| Msa0021810 | Msa1208890 | -0.816339 | 5.818130e-52 | -8.615850e-47 |
| Msa0021810 | Msa1224840 | 0.816876 | 4.411408e-52 | -8.615850e-47 |
| Msa0021810 | Msa1231930 | 0.802070 | 6.680445e-49 | -8.615850e-47 |
| Msa0021810 | Msa1236100 | 0.824235 | 9.009227e-54 | -8.615850e-47 |
| Msa0021810 | Msa1237030 | 0.801909 | 7.208712e-49 | -8.615850e-47 |
| Msa0021810 | Msa1245940 | -0.809698 | 1.663917e-50 | -8.615850e-47 |
| Msa0021810 | Msa1252190 | 0.828554 | 8.429388e-55 | -8.615850e-47 |
| Msa0021810 | Msa1259070 | -0.813356 | 2.668194e-51 | -8.615850e-47 |
| Msa0021810 | Msa1264020 | 0.826935 | 2.064939e-54 | -8.615850e-47 |
| Msa0021810 | Msa1270610 | 0.802448 | 5.583186e-49 | -8.615850e-47 |
| Msa0021810 | Msa1274060 | 0.816765 | 4.670800e-52 | -8.615850e-47 |
| Msa0021810 | Msa1274280 | 0.811783 | 5.889379e-51 | -8.615850e-47 |
| Msa0021810 | Msa1283990 | 0.824344 | 8.495053e-54 | -8.615850e-47 |
| Msa0021810 | Msa1284260 | 0.801866 | 7.354242e-49 | -8.615850e-47 |
| Msa0021810 | Msa1292830 | 0.832876 | 7.358880e-56 | -8.615850e-47 |
| Msa0021810 | Msa1307950 | 0.800948 | 1.134133e-48 | -8.615850e-47 |
| Msa0021810 | Msa1327050 | 0.801534 | 8.605379e-49 | -8.615850e-47 |
| Msa0021810 | Msa1335940 | 0.838583 | 2.638524e-57 | -8.615850e-47 |
| Msa0021810 | Msa1340510 | 0.825422 | 4.729384e-54 | -8.615850e-47 |
| Msa0021810 | Msa1343070 | 0.809455 | 1.876548e-50 | -8.615850e-47 |
| Msa0021810 | Msa1345360 | 0.807626 | 4.611319e-50 | -8.615850e-47 |
| Msa0021810 | Msa1373330 | 0.828374 | 9.315055e-55 | -8.615850e-47 |
| Msa0021810 | Msa1379570 | 0.801323 | 9.505298e-49 | -8.615850e-47 |
| Msa0021810 | Msa1397810 | 0.824708 | 6.972797e-54 | -8.615850e-47 |
| Msa0021810 | Msa1400610 | -0.800783 | 1.225410e-48 | -8.615850e-47 |
| Msa0021810 | Msa1427060 | 0.807759 | 4.319870e-50 | -8.615850e-47 |
| Msa0021810 | Msa1442850 | 0.808071 | 3.708251e-50 | -8.615850e-47 |
| Msa0021810 | Msa1445100 | 0.809332 | 1.993461e-50 | -8.615850e-47 |
| Msa0021810 | Msa1458410 | 0.802909 | 4.485161e-49 | -8.615850e-47 |
| Msa0021810 | Msa1459180 | 0.830005 | 3.746722e-55 | -8.615850e-47 |
| Msa0021810 | Msa1460470 | 0.829871 | 4.038360e-55 | -8.615850e-47 |
| Msa0021810 | Msa1461490 | 0.808856 | 2.521555e-50 | -8.615850e-47 |
| Msa0021810 | Msa1466990 | 0.806875 | 6.650445e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021810 | MtrunA17_Chr1g0173651 | 99.083 | 109 | 1 | 0 | 1 | 109 | 657 | 765 | 3.63e-69 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021810 | AT3G57630.2 | 67.568 | 111 | 36 | 0 | 1 | 111 | 649 | 759 | 3.07e-50 | 170 |
| Msa0021810 | AT3G57630.3 | 67.568 | 111 | 36 | 0 | 1 | 111 | 651 | 761 | 3.13e-50 | 170 |
| Msa0021810 | AT3G57630.1 | 67.568 | 111 | 36 | 0 | 1 | 111 | 651 | 761 | 3.13e-50 | 170 |
| Msa0021810 | AT5G11610.1 | 39.437 | 71 | 43 | 0 | 2 | 72 | 451 | 521 | 9.18e-12 | 61.2 |
| Msa0021810 | AT5G25820.1 | 37.681 | 69 | 43 | 0 | 2 | 70 | 559 | 627 | 1.22e-11 | 61.2 |
Find 17 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAGAATCTTTATCATGTT+TGG | 0.234944 | 1_1:+39479995 | None:intergenic |
| ATGCATCCCTGTGGTCATTC+AGG | 0.338402 | 1_1:-39480425 | Msa0021810:intron |
| CAAACATGATAAAGATTCTT+CGG | 0.349930 | 1_1:-39479994 | Msa0021810:CDS |
| ATGTTTGGAATTTCATCTTC+TGG | 0.357658 | 1_1:+39480010 | None:intergenic |
| TAGCAAATGTTCAGAAAATC+TGG | 0.357752 | 1_1:-39479831 | Msa0021810:CDS |
| AAACATGATAAAGATTCTTC+GGG | 0.478043 | 1_1:-39479993 | Msa0021810:intron |
| GCTTCAATAATCTATTGTCA+TGG | 0.499832 | 1_1:-39477884 | Msa0021810:CDS |
| TGTCACCACCACTTTAATAC+AGG | 0.525124 | 1_1:-39479698 | Msa0021810:intron |
| GATAAATACCTGTATTAAAG+TGG | 0.529467 | 1_1:+39479690 | None:intergenic |
| CTTCAATAATCTATTGTCAT+GGG | 0.548373 | 1_1:-39477883 | Msa0021810:CDS |
| AGTTCGTGGAAGTGCCATCA+AGG | 0.575224 | 1_1:-39477859 | Msa0021810:CDS |
| CCTATTACCTGAATGACCAC+AGG | 0.579608 | 1_1:+39480418 | None:intergenic |
| TTGAAGCAAATAATATGCAA+TGG | 0.592942 | 1_1:-39477906 | Msa0021810:intron |
| CTATTGTCATGGGAAGTTCG+TGG | 0.619983 | 1_1:-39477873 | Msa0021810:CDS |
| AAATACCTGTATTAAAGTGG+TGG | 0.628568 | 1_1:+39479693 | None:intergenic |
| CTATTACCTGAATGACCACA+GGG | 0.638697 | 1_1:+39480419 | None:intergenic |
| TTTACAAGGATGCATCCCTG+TGG | 0.727175 | 1_1:-39480434 | Msa0021810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTAAAGTATAAGTTAA+TGG | - | chr1_1:39479797-39479816 | Msa0021810:CDS | 10.0% |
| !! | TAATATACTATGCAATTTAT+TGG | - | chr1_1:39479075-39479094 | Msa0021810:intron | 15.0% |
| !! | GATAAAGAAAATAATAAAAG+AGG | - | chr1_1:39479479-39479498 | Msa0021810:intron | 15.0% |
| !! | TCAATTAAAAACATAATCAA+GGG | + | chr1_1:39479544-39479563 | None:intergenic | 15.0% |
| !! | TTCAATTAAAAACATAATCA+AGG | + | chr1_1:39479545-39479564 | None:intergenic | 15.0% |
| !!! | GTAACTATTTTCTTTTTAAA+AGG | + | chr1_1:39479630-39479649 | None:intergenic | 15.0% |
| !! | TTTAAAAAGAAAATAGTTAC+TGG | - | chr1_1:39479630-39479649 | Msa0021810:intron | 15.0% |
| !!! | ATCTTTTAAATTATTTCCTG+GGG | + | chr1_1:39477919-39477938 | None:intergenic | 20.0% |
| !!! | CATCTTTTAAATTATTTCCT+GGG | + | chr1_1:39477920-39477939 | None:intergenic | 20.0% |
| !!! | TGAATTTTTAAAATTGACAG+AGG | - | chr1_1:39478571-39478590 | Msa0021810:intron | 20.0% |
| !!! | GAAAAGCATAATTTGTTAAA+AGG | + | chr1_1:39478988-39479007 | None:intergenic | 20.0% |
| !! | AAAAAAATCATGTATATCAC+TGG | + | chr1_1:39479303-39479322 | None:intergenic | 20.0% |
| !!! | ATATGACCACAAATATATTT+TGG | + | chr1_1:39479781-39479800 | None:intergenic | 20.0% |
| !! | AACTTGATTTAAAAGATAAG+TGG | + | chr1_1:39480358-39480377 | None:intergenic | 20.0% |
| !! | CCATCTTTTAAATTATTTCC+TGG | + | chr1_1:39477921-39477940 | None:intergenic | 25.0% |
| ! | CCAGGAAATAATTTAAAAGA+TGG | - | chr1_1:39477918-39477937 | Msa0021810:intron | 25.0% |
| ! | TAAACTGAAATCATCAATGA+TGG | - | chr1_1:39478162-39478181 | Msa0021810:intron | 25.0% |
| ! | CAAACATGATAAAGATTCTT+CGG | - | chr1_1:39478302-39478321 | Msa0021810:intron | 25.0% |
| ! | AAACATGATAAAGATTCTTC+GGG | - | chr1_1:39478303-39478322 | Msa0021810:intron | 25.0% |
| ! | CATACAATAACTATATGCAA+AGG | + | chr1_1:39478395-39478414 | None:intergenic | 25.0% |
| ! | GCATATAGTTATTGTATGAA+TGG | - | chr1_1:39478397-39478416 | Msa0021810:intron | 25.0% |
| ! | ATAGTTATTGTATGAATGGT+TGG | - | chr1_1:39478401-39478420 | Msa0021810:intron | 25.0% |
| ! | GATAAATACCTGTATTAAAG+TGG | + | chr1_1:39478609-39478628 | None:intergenic | 25.0% |
| !!! | TTCTAGAATAGTTTTGACAA+AGG | + | chr1_1:39478634-39478653 | None:intergenic | 25.0% |
| !!! | CAAAACTATTCTAGAATCAA+TGG | - | chr1_1:39478638-39478657 | Msa0021810:intron | 25.0% |
| ! | CTTGTTGAATACAAAAACTA+TGG | + | chr1_1:39479127-39479146 | None:intergenic | 25.0% |
| !! | CATAGTTTTTGTATTCAACA+AGG | - | chr1_1:39479125-39479144 | Msa0021810:intron | 25.0% |
| !! | TGGAGATAGTATCATATTTT+AGG | + | chr1_1:39479262-39479281 | None:intergenic | 25.0% |
| !!! | CTAGTTATTTTACAATTCCA+CGG | + | chr1_1:39479387-39479406 | None:intergenic | 25.0% |
| ! | AAGTTCGAAAACAATGAATT+TGG | - | chr1_1:39479563-39479582 | Msa0021810:intron | 25.0% |
| !!! | TTTTCAAAATTAGTTTCCAG+AGG | - | chr1_1:39479588-39479607 | Msa0021810:intron | 25.0% |
| !! | TTTCAAAATTAGTTTCCAGA+GGG | - | chr1_1:39479589-39479608 | Msa0021810:intron | 25.0% |
| ! | CTCATGAAATTGAATGAAAA+TGG | + | chr1_1:39480070-39480089 | None:intergenic | 25.0% |
| ! | AACATGACATTAAGAACAAA+TGG | + | chr1_1:39480234-39480253 | None:intergenic | 25.0% |
| ! | GAACAAATGAATGAAACAAA+TGG | + | chr1_1:39480304-39480323 | None:intergenic | 25.0% |
| ! | TTGAAGCAAATAATATGCAA+TGG | - | chr1_1:39480390-39480409 | Msa0021810:intron | 25.0% |
| ! | CTTCAATAATCTATTGTCAT+GGG | - | chr1_1:39480413-39480432 | Msa0021810:intron | 25.0% |
| TTATTTCCTGGGGAAAAAAA+GGG | + | chr1_1:39477909-39477928 | None:intergenic | 30.0% | |
| ATTATTTCCTGGGGAAAAAA+AGG | + | chr1_1:39477910-39477929 | None:intergenic | 30.0% | |
| TAAAAACGATTCATGAGCAT+TGG | - | chr1_1:39478075-39478094 | Msa0021810:intron | 30.0% | |
| ! | TAGTTGAGTACATTTTCGTA+TGG | + | chr1_1:39478244-39478263 | None:intergenic | 30.0% |
| ! | ATGTTTGGAATTTCATCTTC+TGG | + | chr1_1:39478289-39478308 | None:intergenic | 30.0% |
| CGAAGAATCTTTATCATGTT+TGG | + | chr1_1:39478304-39478323 | None:intergenic | 30.0% | |
| ACTATGCAACGCATAAAAAA+GGG | + | chr1_1:39478346-39478365 | None:intergenic | 30.0% | |
| AACTATGCAACGCATAAAAA+AGG | + | chr1_1:39478347-39478366 | None:intergenic | 30.0% | |
| TAGCAAATGTTCAGAAAATC+TGG | - | chr1_1:39478465-39478484 | Msa0021810:intron | 30.0% | |
| !!! | TTTTGGACATGTTGATGATT+GGG | - | chr1_1:39478544-39478563 | Msa0021810:intron | 30.0% |
| AAATACCTGTATTAAAGTGG+TGG | + | chr1_1:39478606-39478625 | None:intergenic | 30.0% | |
| ! | CATACACACATTTTATGTGA+GGG | + | chr1_1:39479326-39479345 | None:intergenic | 30.0% |
| ! | ACATACACACATTTTATGTG+AGG | + | chr1_1:39479327-39479346 | None:intergenic | 30.0% |
| AAATAACTAGTGTATGTGCA+CGG | - | chr1_1:39479397-39479416 | Msa0021810:intron | 30.0% | |
| ATCAAGGGAACAATTCAAAT+AGG | + | chr1_1:39479529-39479548 | None:intergenic | 30.0% | |
| GAGAGGTAACATTAGAAAAA+CGG | - | chr1_1:39479739-39479758 | Msa0021810:CDS | 30.0% | |
| CATTGGCCAAAATATATTTG+TGG | - | chr1_1:39479772-39479791 | Msa0021810:CDS | 30.0% | |
| AAAGTGAGAATTCAAAGCAA+TGG | - | chr1_1:39479844-39479863 | Msa0021810:CDS | 30.0% | |
| ATGAAAATGGTCAAATGTTG+AGG | + | chr1_1:39480057-39480076 | None:intergenic | 30.0% | |
| ! | TAACTTGAAGAAAGCACAAA+TGG | + | chr1_1:39480260-39480279 | None:intergenic | 30.0% |
| AACAAATGGAAAACATGACA+TGG | + | chr1_1:39480290-39480309 | None:intergenic | 30.0% | |
| GCTTCAATAATCTATTGTCA+TGG | - | chr1_1:39480412-39480431 | Msa0021810:intron | 30.0% | |
| ! | GATTCATCTTCAGAGTTTTG+TGG | - | chr1_1:39478031-39478050 | Msa0021810:intron | 35.0% |
| CATTGGTATAGTGATGAAAG+AGG | - | chr1_1:39478092-39478111 | Msa0021810:intron | 35.0% | |
| !!! | GTTTTGTTTCCTTGTTCTGT+AGG | - | chr1_1:39478204-39478223 | Msa0021810:intron | 35.0% |
| TATGCAACGCATAAAAAAGG+GGG | + | chr1_1:39478344-39478363 | None:intergenic | 35.0% | |
| CTATGCAACGCATAAAAAAG+GGG | + | chr1_1:39478345-39478364 | None:intergenic | 35.0% | |
| ATAACTATATGCAAAGGCTC+TGG | + | chr1_1:39478389-39478408 | None:intergenic | 35.0% | |
| ! | CTATTTTGCTTGAAGCTGAA+AGG | - | chr1_1:39478510-39478529 | Msa0021810:intron | 35.0% |
| !!! | CTTTTGGACATGTTGATGAT+TGG | - | chr1_1:39478543-39478562 | Msa0021810:intron | 35.0% |
| CTCTATATGTCTACAAGTTC+TGG | + | chr1_1:39478676-39478695 | None:intergenic | 35.0% | |
| !!! | TTCTCTTTTTTCAGCCTCTA+GGG | + | chr1_1:39478743-39478762 | None:intergenic | 35.0% |
| !!! | TTTCTCTTTTTTCAGCCTCT+AGG | + | chr1_1:39478744-39478763 | None:intergenic | 35.0% |
| TTGATTCTTCTCAGCCAATT+TGG | - | chr1_1:39478894-39478913 | Msa0021810:intron | 35.0% | |
| TGATTCTTCTCAGCCAATTT+GGG | - | chr1_1:39478895-39478914 | Msa0021810:intron | 35.0% | |
| ! | GCTTTTCAAAAGCTCCATTA+TGG | - | chr1_1:39479001-39479020 | Msa0021810:intron | 35.0% |
| TTTCAAAAGCTCCATTATGG+TGG | - | chr1_1:39479004-39479023 | Msa0021810:intron | 35.0% | |
| ACAAGTTACATAATGACCCT+TGG | - | chr1_1:39479157-39479176 | Msa0021810:intron | 35.0% | |
| AAAACGAATAATTCACCCTC+TGG | + | chr1_1:39479607-39479626 | None:intergenic | 35.0% | |
| AGGTAACATTAGAAAAACGG+AGG | - | chr1_1:39479742-39479761 | Msa0021810:CDS | 35.0% | |
| GGTAACATTAGAAAAACGGA+GGG | - | chr1_1:39479743-39479762 | Msa0021810:CDS | 35.0% | |
| AAATGGTCAAATGTTGAGGT+GGG | + | chr1_1:39480053-39480072 | None:intergenic | 35.0% | |
| AAAATGGTCAAATGTTGAGG+TGG | + | chr1_1:39480054-39480073 | None:intergenic | 35.0% | |
| ! | TATACCATGCATTCTAGCTA+AGG | - | chr1_1:39480147-39480166 | Msa0021810:intron | 35.0% |
| TTAACCTTAGCTAGAATGCA+TGG | + | chr1_1:39480154-39480173 | None:intergenic | 35.0% | |
| TCTCCTCTATTTGAGTAATC+TGG | - | chr1_1:39480185-39480204 | Msa0021810:intron | 35.0% | |
| AGACCAGATTACTCAAATAG+AGG | + | chr1_1:39480191-39480210 | None:intergenic | 35.0% | |
| AAGATAAGTGGATACACATG+AGG | + | chr1_1:39480346-39480365 | None:intergenic | 35.0% | |
| CTATTACCTGAATGACCACA+GGG | + | chr1_1:39477880-39477899 | None:intergenic | 40.0% | |
| TGTTTCCTTGTTCTGTAGGA+TGG | - | chr1_1:39478208-39478227 | Msa0021810:intron | 40.0% | |
| GTTTCCTTGTTCTGTAGGAT+GGG | - | chr1_1:39478209-39478228 | Msa0021810:intron | 40.0% | |
| AAATCCCATCCTACAGAACA+AGG | + | chr1_1:39478216-39478235 | None:intergenic | 40.0% | |
| ATGCAACGCATAAAAAAGGG+GGG | + | chr1_1:39478343-39478362 | None:intergenic | 40.0% | |
| !! | ATGAATGGTTGGTGATATGC+AGG | - | chr1_1:39478412-39478431 | Msa0021810:intron | 40.0% |
| !! | TGAATGGTTGGTGATATGCA+GGG | - | chr1_1:39478413-39478432 | Msa0021810:intron | 40.0% |
| !! | GAAAGGCAAAAAGCTGCTTT+TGG | - | chr1_1:39478527-39478546 | Msa0021810:intron | 40.0% |
| TGTCACCACCACTTTAATAC+AGG | - | chr1_1:39478598-39478617 | Msa0021810:intron | 40.0% | |
| TAGAAACAACTCAACCCACT+TGG | - | chr1_1:39478812-39478831 | Msa0021810:intron | 40.0% | |
| AGAAACAACTCAACCCACTT+GGG | - | chr1_1:39478813-39478832 | Msa0021810:intron | 40.0% | |
| !! | GTAGTATTGGCTTGAGACTT+GGG | - | chr1_1:39478844-39478863 | Msa0021810:intron | 40.0% |
| CTAAACTAGTCCACCCAAAT+TGG | + | chr1_1:39478911-39478930 | None:intergenic | 40.0% | |
| ATGCTTCTGTTCCACCATAA+TGG | + | chr1_1:39479018-39479037 | None:intergenic | 40.0% | |
| AGTTACATAATGACCCTTGG+AGG | - | chr1_1:39479160-39479179 | Msa0021810:intron | 40.0% | |
| ACCCTTGGAGGAAACAAATT+GGG | - | chr1_1:39479172-39479191 | Msa0021810:intron | 40.0% | |
| ATTGGGCACAACAAGAAGTT+TGG | - | chr1_1:39479189-39479208 | Msa0021810:intron | 40.0% | |
| TATGATACTATCTCCACTGC+AGG | - | chr1_1:39479266-39479285 | Msa0021810:intron | 40.0% | |
| GTATCTTGAGTCTGTCTCAT+AGG | - | chr1_1:39479353-39479372 | Msa0021810:intron | 40.0% | |
| GTCTTCTAATCTGTTGAGTG+TGG | - | chr1_1:39479717-39479736 | Msa0021810:CDS | 40.0% | |
| AGCTAGAATGCATGGTATAG+AGG | + | chr1_1:39480146-39480165 | None:intergenic | 40.0% | |
| TTTACAAGGATGCATCCCTG+TGG | - | chr1_1:39477862-39477881 | Msa0021810:CDS | 45.0% | |
| CCTATTACCTGAATGACCAC+AGG | + | chr1_1:39477881-39477900 | None:intergenic | 45.0% | |
| CCTGTGGTCATTCAGGTAAT+AGG | - | chr1_1:39477878-39477897 | Msa0021810:CDS | 45.0% | |
| TGCAACGCATAAAAAAGGGG+GGG | + | chr1_1:39478342-39478361 | None:intergenic | 45.0% | |
| !! | GAATGGTTGGTGATATGCAG+GGG | - | chr1_1:39478414-39478433 | Msa0021810:intron | 45.0% |
| ATTGAATTCTCCCTCCCTAG+AGG | - | chr1_1:39478726-39478745 | Msa0021810:intron | 45.0% | |
| !!! | CTTTTTTCAGCCTCTAGGGA+GGG | + | chr1_1:39478739-39478758 | None:intergenic | 45.0% |
| !!! | TCTTTTTTCAGCCTCTAGGG+AGG | + | chr1_1:39478740-39478759 | None:intergenic | 45.0% |
| !! | TTGGGTTGACCTGGTAGTAT+TGG | - | chr1_1:39478831-39478850 | Msa0021810:intron | 45.0% |
| AGTCTCAAGCCAATACTACC+AGG | + | chr1_1:39478843-39478862 | None:intergenic | 45.0% | |
| !! | GGTAGTATTGGCTTGAGACT+TGG | - | chr1_1:39478843-39478862 | Msa0021810:intron | 45.0% |
| GAATCAAACCTGAGACCTTG+AGG | + | chr1_1:39478881-39478900 | None:intergenic | 45.0% | |
| TTCTTCTCAGCCAATTTGGG+TGG | - | chr1_1:39478898-39478917 | Msa0021810:intron | 45.0% | |
| GACCCTTGGAGGAAACAAAT+TGG | - | chr1_1:39479171-39479190 | Msa0021810:intron | 45.0% | |
| ! | GCCCAATTTGTTTCCTCCAA+GGG | + | chr1_1:39479176-39479195 | None:intergenic | 45.0% |
| ! | TGCCCAATTTGTTTCCTCCA+AGG | + | chr1_1:39479177-39479196 | None:intergenic | 45.0% |
| TGGATTACCTAACCAGTGTG+TGG | - | chr1_1:39479209-39479228 | Msa0021810:intron | 45.0% | |
| ! | GTGTTAACCACACACTGGTT+AGG | + | chr1_1:39479219-39479238 | None:intergenic | 45.0% |
| ! | AGATGGTGTTAACCACACAC+TGG | + | chr1_1:39479224-39479243 | None:intergenic | 45.0% |
| TGTGTGGTTAACACCATCTG+AGG | - | chr1_1:39479225-39479244 | Msa0021810:intron | 45.0% | |
| TGGTTAACACCATCTGAGGA+AGG | - | chr1_1:39479229-39479248 | Msa0021810:intron | 45.0% | |
| GGTTGAATGATTTCCTGCAG+TGG | + | chr1_1:39479282-39479301 | None:intergenic | 45.0% | |
| CTAATCTGTTGAGTGTGGAG+AGG | - | chr1_1:39479722-39479741 | Msa0021810:CDS | 45.0% | |
| AAAACGGAGGGAAGTAGCAT+TGG | - | chr1_1:39479755-39479774 | Msa0021810:CDS | 45.0% | |
| ! | GCTTTGAATTCTCACGTTCG+AGG | + | chr1_1:39480031-39480050 | None:intergenic | 45.0% |
| CAAGAATCTGCTTGTGTGAC+AGG | + | chr1_1:39480111-39480130 | None:intergenic | 45.0% | |
| CTATTGTCATGGGAAGTTCG+TGG | - | chr1_1:39480423-39480442 | Msa0021810:intron | 45.0% | |
| ATGCATCCCTGTGGTCATTC+AGG | - | chr1_1:39477871-39477890 | Msa0021810:CDS | 50.0% | |
| !!! | GTTGTGCCCTTTTTTTCCCC+AGG | - | chr1_1:39477900-39477919 | Msa0021810:CDS | 50.0% |
| CAACGCATAAAAAAGGGGGG+GGG | + | chr1_1:39478340-39478359 | None:intergenic | 50.0% | |
| GCAACGCATAAAAAAGGGGG+GGG | + | chr1_1:39478341-39478360 | None:intergenic | 50.0% | |
| ACTACCAGGTCAACCCAAGT+GGG | + | chr1_1:39478829-39478848 | None:intergenic | 50.0% | |
| TACTACCAGGTCAACCCAAG+TGG | + | chr1_1:39478830-39478849 | None:intergenic | 50.0% | |
| TCAAACCTGAGACCTTGAGG+AGG | + | chr1_1:39478878-39478897 | None:intergenic | 50.0% | |
| GGAACTTGACCTTCCTCAGA+TGG | + | chr1_1:39479241-39479260 | None:intergenic | 50.0% | |
| !! | AGTTCGTGGAAGTGCCATCA+AGG | - | chr1_1:39480437-39480456 | Msa0021810:CDS | 50.0% |
| !! | TCAACCCACTTGGGTTGACC+TGG | - | chr1_1:39478822-39478841 | Msa0021810:intron | 55.0% |
| TCTCATAGGCTGTCACACCG+TGG | - | chr1_1:39479367-39479386 | Msa0021810:intron | 55.0% | |
| ! | TGGGAGTGTGCTCCTCCTCA+AGG | - | chr1_1:39478863-39478882 | Msa0021810:intron | 60.0% |
| GTGCTCCTCCTCAAGGTCTC+AGG | - | chr1_1:39478870-39478889 | Msa0021810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 39477851 | 39480467 | 39477851 | ID=Msa0021810;Name=Msa0021810 |
| chr1_1 | mRNA | 39477851 | 39480467 | 39477851 | ID=Msa0021810-mRNA-1;Parent=Msa0021810;Name=Msa0021810-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.66|0.75|0.75|0.33|0.5|4|0|132 |
| chr1_1 | exon | 39477851 | 39477922 | 39477851 | ID=Msa0021810-mRNA-1:exon:12075;Parent=Msa0021810-mRNA-1 |
| chr1_1 | exon | 39479699 | 39479884 | 39479699 | ID=Msa0021810-mRNA-1:exon:12074;Parent=Msa0021810-mRNA-1 |
| chr1_1 | exon | 39479994 | 39480092 | 39479994 | ID=Msa0021810-mRNA-1:exon:12073;Parent=Msa0021810-mRNA-1 |
| chr1_1 | exon | 39480426 | 39480467 | 39480426 | ID=Msa0021810-mRNA-1:exon:12072;Parent=Msa0021810-mRNA-1 |
| chr1_1 | CDS | 39480426 | 39480467 | 39480426 | ID=Msa0021810-mRNA-1:cds;Parent=Msa0021810-mRNA-1 |
| chr1_1 | CDS | 39479994 | 39480092 | 39479994 | ID=Msa0021810-mRNA-1:cds;Parent=Msa0021810-mRNA-1 |
| chr1_1 | CDS | 39479699 | 39479884 | 39479699 | ID=Msa0021810-mRNA-1:cds;Parent=Msa0021810-mRNA-1 |
| chr1_1 | CDS | 39477851 | 39477922 | 39477851 | ID=Msa0021810-mRNA-1:cds;Parent=Msa0021810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
