AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797750 MtrunA17_Chr5g0401071 100.000 184 0 0 1 184 1 184 1.50e-136 379
Msa0797750 MtrunA17_Chr5g0434561 82.967 182 31 0 1 182 1 182 7.04e-114 321
Msa0797750 MtrunA17_Chr4g0012371 90.909 165 15 0 20 184 1 165 9.16e-109 308
Msa0797750 MtrunA17_Chr4g0072861 36.813 182 112 2 1 182 1 179 9.97e-36 123
Msa0797750 MtrunA17_Chr7g0270301 33.152 184 120 2 1 184 1 181 4.54e-31 111
Msa0797750 MtrunA17_Chr2g0287721 32.787 183 110 2 2 178 7 182 1.11e-30 110
Msa0797750 MtrunA17_Chr6g0450081 32.609 184 121 2 1 184 1 181 1.52e-30 110
Msa0797750 MtrunA17_Chr1g0194261 32.065 184 122 2 1 184 1 181 3.06e-30 108
Msa0797750 MtrunA17_Chr5g0413451 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0797750 MtrunA17_Chr5g0413441 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0797750 MtrunA17_Chr5g0401761 33.735 166 109 1 11 176 9 173 9.52e-30 107
Msa0797750 MtrunA17_Chr4g0039591 29.651 172 120 1 5 176 3 173 4.16e-26 99.0
Msa0797750 MtrunA17_Chr8g0373271 33.735 166 106 3 20 183 17 180 4.26e-26 98.6
Msa0797750 MtrunA17_Chr5g0395641 30.387 181 123 2 5 183 3 182 4.82e-25 95.9
Msa0797750 MtrunA17_Chr1g0188111 35.811 148 82 2 14 155 12 152 8.89e-25 95.1
Msa0797750 MtrunA17_Chr5g0395631 29.801 151 105 1 5 155 3 152 3.04e-24 94.0
Msa0797750 MtrunA17_Chr2g0294701 31.443 194 119 3 1 181 1 193 3.86e-23 91.3
Msa0797750 MtrunA17_Chr7g0271761 36.601 153 95 2 1 152 1 152 8.95e-23 90.1
Msa0797750 MtrunA17_Chr4g0068171 31.073 177 109 2 17 181 18 193 1.12e-21 87.4
Msa0797750 MtrunA17_Chr4g0055651 28.994 169 110 5 20 183 9 172 1.33e-12 63.5
Msa0797750 MtrunA17_Chr7g0250531 30.189 159 101 5 20 173 9 162 1.19e-11 60.8
Msa0797750 MtrunA17_Chr2g0276931 28.402 169 111 5 20 183 10 173 2.20e-11 60.1
Msa0797750 MtrunA17_Chr7g0265001 30.675 163 97 8 24 177 21 176 3.54e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797750 AT3G49870.1 92.935 184 13 0 1 184 1 184 6.45e-127 354
Msa0797750 AT5G67560.1 92.308 182 14 0 1 182 1 182 1.85e-125 351
Msa0797750 AT5G37680.1 80.978 184 35 0 1 184 1 184 6.06e-115 324
Msa0797750 AT3G49870.2 92.727 165 12 0 20 184 1 165 1.85e-112 317
Msa0797750 AT3G49860.1 80.838 167 32 0 18 184 10 176 1.79e-98 282
Msa0797750 AT5G37680.2 78.832 137 29 0 48 184 1 137 6.53e-81 236
Msa0797750 AT2G24765.1 33.708 178 117 1 7 184 5 181 3.41e-33 117
Msa0797750 AT5G52210.1 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0797750 AT5G52210.2 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0797750 AT1G10630.1 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0797750 AT1G10630.2 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0797750 AT2G47170.2 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0797750 AT2G47170.1 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0797750 AT2G47170.3 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0797750 AT1G23490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT1G70490.2 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT1G70490.7 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT1G70490.4 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT1G70490.3 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT1G70490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT1G70490.6 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT1G70490.5 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0797750 AT5G14670.2 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0797750 AT5G14670.3 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0797750 AT3G62290.3 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0797750 AT3G62290.1 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0797750 AT3G62290.2 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0797750 AT5G14670.1 32.240 183 121 2 1 183 1 180 1.80e-29 107
Msa0797750 AT3G03120.1 29.070 172 121 1 5 176 3 173 4.60e-26 99.0
Msa0797750 AT5G17060.2 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0797750 AT5G17060.1 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0797750 AT2G24765.2 35.484 124 79 1 7 130 5 127 5.23e-25 94.7
Msa0797750 AT2G15310.1 30.061 163 107 3 17 176 15 173 1.02e-24 95.9
Msa0797750 AT2G18390.1 33.133 166 107 3 20 183 17 180 4.24e-24 94.0
Msa0797750 AT3G22950.1 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0797750 AT3G22950.2 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0797750 AT3G03120.2 32.812 128 85 1 5 132 3 129 1.97e-23 90.5
Msa0797750 AT3G62560.1 36.765 136 85 1 17 152 18 152 1.97e-22 89.7
Msa0797750 AT1G56330.1 31.250 192 118 3 1 179 1 191 2.12e-22 89.7
Msa0797750 AT4G02080.1 36.054 147 92 2 7 152 7 152 4.66e-22 88.6
Msa0797750 AT1G09180.1 31.959 194 118 3 1 181 1 193 1.83e-20 84.3
Msa0797750 AT1G02440.1 25.137 183 118 4 13 181 11 188 3.08e-17 75.9
Msa0797750 AT1G02430.1 24.725 182 118 4 14 181 12 188 2.35e-16 73.6
Msa0797750 AT1G02430.2 26.712 146 102 2 14 154 12 157 1.02e-15 71.2
Msa0797750 AT1G43890.3 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0797750 AT1G43890.1 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0797750 AT1G43890.2 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0797750 AT1G02440.2 25.352 142 71 2 13 154 11 117 5.49e-11 57.8

Find 61 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGGTGGGATTAATTTA+AGG 0.222736 5_3:+9971958 None:intergenic
ATTGAGTGGTATCCCTTTAT+TGG 0.240394 5_3:-9972638 Msa0797750:CDS
CTTGATATGCTAAGATTATC+TGG 0.244755 5_3:+9972694 None:intergenic
TTGTTTCCCAACACCAATAA+AGG 0.252942 5_3:+9972625 None:intergenic
GAGATGGAGTTATCTCTTAT+AGG 0.305630 5_3:-9976798 Msa0797750:CDS
ACAATAAAGTTATGGGATCT+TGG 0.325152 5_3:-9973688 Msa0797750:CDS
AGTTTCTTAGCTCTTTGATT+TGG 0.349213 5_3:+9972293 None:intergenic
CAATAAAGTTATGGGATCTT+GGG 0.353435 5_3:-9973687 Msa0797750:CDS
AATGATTAGTCTTGTATGAT+TGG 0.354105 5_3:-9972152 Msa0797750:three_prime_UTR
AGATGGAGTTATCTCTTATA+GGG 0.367558 5_3:-9976797 Msa0797750:CDS
CCATCTCCTGCTTGAAGAAA+AGG 0.375686 5_3:+9976814 None:intergenic
GCTGGTCATTTGAAAGAAAC+AGG 0.376587 5_3:+9971990 None:intergenic
TTGTATGATTGGGAATTAAA+CGG 0.384038 5_3:-9972141 Msa0797750:three_prime_UTR
GCAATGTTACAATAAAGTTA+TGG 0.384617 5_3:-9973696 Msa0797750:CDS
TGCATGTCTAACTCTGAGAT+TGG 0.387642 5_3:-9972206 Msa0797750:three_prime_UTR
CAATGTTACAATAAAGTTAT+GGG 0.399340 5_3:-9973695 Msa0797750:CDS
AATTTAAGGCCACACATTGC+TGG 0.404845 5_3:+9971972 None:intergenic
GAGTGCAAAGCGAGGGAAGA+AGG 0.427399 5_3:-9977674 Msa0797750:five_prime_UTR
TGTATGATTGGGAATTAAAC+GGG 0.430307 5_3:-9972140 Msa0797750:three_prime_UTR
GGTATCCCTTTATTGGTGTT+GGG 0.432316 5_3:-9972631 Msa0797750:CDS
TGTTTCCCAACACCAATAAA+GGG 0.437850 5_3:+9972626 None:intergenic
ATGATTAGTCTTGTATGATT+GGG 0.442414 5_3:-9972151 Msa0797750:three_prime_UTR
TTTATCCTTTCCCTTTCCTC+AGG 0.449046 5_3:-9972183 Msa0797750:three_prime_UTR
TGGTATCCCTTTATTGGTGT+TGG 0.453471 5_3:-9972632 Msa0797750:CDS
CTTATAGGGCTTCAGAATGC+TGG 0.462107 5_3:-9976783 Msa0797750:CDS
TTACTAAGCACCTGAGGAAA+GGG 0.471210 5_3:+9972173 None:intergenic
TGCAGGTGGGATTCAATATG+AGG 0.498889 5_3:-9973732 Msa0797750:intron
CAAAGCGAGGGAAGAAGGAT+AGG 0.507495 5_3:-9977669 Msa0797750:five_prime_UTR
ACGGGATAAAATACATGTCA+AGG 0.525525 5_3:-9972122 Msa0797750:three_prime_UTR
TTACAGCAACAACATTTACA+AGG 0.527139 5_3:+9976751 None:intergenic
ACATCGACTCTGTTATTGAC+TGG 0.533756 5_3:-9972329 Msa0797750:CDS
AATATGAGGAAAGTAACAAA+AGG 0.537108 5_3:-9973718 Msa0797750:CDS
GGAAACAAGATTGACAAGGC+AGG 0.537382 5_3:-9972610 Msa0797750:CDS
ATTACTAAGCACCTGAGGAA+AGG 0.544169 5_3:+9972172 None:intergenic
CTCAATTCTGGATTTAGTAG+TGG 0.544172 5_3:-9972233 Msa0797750:three_prime_UTR
GAAACAAGATTGACAAGGCA+GGG 0.547885 5_3:-9972609 Msa0797750:CDS
CATGTCCTCGCTGTATCCAC+CGG 0.552693 5_3:+9976637 None:intergenic
AAAGGGATACCACTCAATGA+TGG 0.564623 5_3:+9972643 None:intergenic
AACCTAGGTTCCGTAGCATG+TGG 0.564867 5_3:-9973660 Msa0797750:CDS
AATAAAGTTATGGGATCTTG+GGG 0.566711 5_3:-9973686 Msa0797750:CDS
GCGAGGGAAGAAGGATAGGA+AGG 0.567798 5_3:-9977665 Msa0797750:five_prime_UTR
CGGGATAAAATACATGTCAA+GGG 0.576180 5_3:-9972121 Msa0797750:three_prime_UTR
GTCAATAACAGAGTCGATGT+TGG 0.577317 5_3:+9972332 None:intergenic
AGTAACGTTCCCACATGCTA+CGG 0.585403 5_3:+9973650 None:intergenic
TTCAAATGACCAGCAATGTG+TGG 0.602029 5_3:-9971981 Msa0797750:three_prime_UTR
TACAGCAACAACATTTACAA+GGG 0.602506 5_3:+9976752 None:intergenic
CTGAGCAAGCCATCATTGAG+TGG 0.608208 5_3:-9972652 Msa0797750:CDS
TAAAGTTATGGGATCTTGGG+GGG 0.613674 5_3:-9973684 Msa0797750:CDS
GTTTGTTTCATACACAATAG+CGG 0.619252 5_3:+9973615 None:intergenic
ACCTAGGTTCCGTAGCATGT+GGG 0.619889 5_3:-9973659 Msa0797750:CDS
CGATAATAGAGTGCAAAGCG+AGG 0.626433 5_3:-9977682 Msa0797750:five_prime_UTR
AAACAAGATTGACAAGGCAG+GGG 0.626437 5_3:-9972608 Msa0797750:CDS
ACGCGTATCTTACATTTGGT+CGG 0.630887 5_3:+9972564 None:intergenic
AAGCACCTGAGGAAAGGGAA+AGG 0.631811 5_3:+9972178 None:intergenic
TCCCACATGCTACGGAACCT+AGG 0.638908 5_3:+9973658 None:intergenic
GTGGGAACGTTACTGTCGTG+CGG 0.647989 5_3:-9973641 Msa0797750:CDS
GATAATAGAGTGCAAAGCGA+GGG 0.655867 5_3:-9977681 Msa0797750:five_prime_UTR
ATAAAGTTATGGGATCTTGG+GGG 0.665703 5_3:-9973685 Msa0797750:CDS
TAATCATTACTAAGCACCTG+AGG 0.669322 5_3:+9972167 None:intergenic
GTTGGGAAACAAGATTGACA+AGG 0.714570 5_3:-9972614 Msa0797750:CDS
TTAGACCGGTGGATACAGCG+AGG 0.780785 5_3:-9976642 Msa0797750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTATTGTGTATTAT+CGG - chr5_3:9977587-9977606 Msa0797750:five_prime_UTR 10.0%
!!! TTGTTTATTTTTTGTTGAAT+AGG - chr5_3:9972238-9972257 Msa0797750:three_prime_UTR 15.0%
!!! TCAATTTGTTTGTAATAATT+TGG - chr5_3:9972281-9972300 Msa0797750:exon 15.0%
!!! CTAATTTTTATTATTCACTT+GGG - chr5_3:9975846-9975865 Msa0797750:intron 15.0%
!!! TTGTTTATTTTAGTTTTTGT+TGG - chr5_3:9976347-9976366 Msa0797750:intron 15.0%
!!! TGTTTATTTTAGTTTTTGTT+GGG - chr5_3:9976348-9976367 Msa0797750:intron 15.0%
!! AAAAAAGAATACAAAATTGA+AGG + chr5_3:9977226-9977245 None:intergenic 15.0%
!!! TTTAGTTTGAGAAAAAACAA+TGG - chr5_3:9972156-9972175 Msa0797750:three_prime_UTR 20.0%
!!! TTAGTTTGAGAAAAAACAAT+GGG - chr5_3:9972157-9972176 Msa0797750:three_prime_UTR 20.0%
!! TGATTTACAAATCATATCAA+AGG + chr5_3:9972330-9972349 None:intergenic 20.0%
!!! GATATGATTTGTAAATCAAT+TGG - chr5_3:9972332-9972351 Msa0797750:CDS 20.0%
!!! AAAATGATTTTTATCCCTAA+GGG + chr5_3:9972648-9972667 None:intergenic 20.0%
!!! AAAAATGATTTTTATCCCTA+AGG + chr5_3:9972649-9972668 None:intergenic 20.0%
!!! TATTTATATTGCTTTTAGAC+CGG - chr5_3:9973019-9973038 Msa0797750:intron 20.0%
!!! TAGAAAAAAGTTTGTTATTG+TGG - chr5_3:9973249-9973268 Msa0797750:intron 20.0%
!! TAATAAGCTATACGATAAAT+AGG - chr5_3:9973330-9973349 Msa0797750:intron 20.0%
!! TCAGTTATAACAATAGAAAT+AGG + chr5_3:9974515-9974534 None:intergenic 20.0%
!! ATTTCTATTGTTATAACTGA+CGG - chr5_3:9974515-9974534 Msa0797750:intron 20.0%
!!! TTTGAAATTTTTTCCTTACT+TGG - chr5_3:9974686-9974705 Msa0797750:intron 20.0%
!!! TTGAAATTTTTTCCTTACTT+GGG - chr5_3:9974687-9974706 Msa0797750:intron 20.0%
!! TTCAATTATTTGATACAGAT+GGG - chr5_3:9975376-9975395 Msa0797750:intron 20.0%
!! TAGTTAATTGTTATCAATCA+CGG + chr5_3:9975575-9975594 None:intergenic 20.0%
!!! TTTCCTGTATTTTTTTTAAC+GGG + chr5_3:9975718-9975737 None:intergenic 20.0%
!!! CTTTCCTGTATTTTTTTTAA+CGG + chr5_3:9975719-9975738 None:intergenic 20.0%
!! CCAAGTGAATAATAAAAATT+AGG + chr5_3:9975848-9975867 None:intergenic 20.0%
!!! CCTAATTTTTATTATTCACT+TGG - chr5_3:9975845-9975864 Msa0797750:intron 20.0%
!! CAATGTTACAATAAAGTTAT+GGG - chr5_3:9975980-9975999 Msa0797750:intron 20.0%
!! AAGAATAATATTAAGGCTTT+AGG + chr5_3:9976309-9976328 None:intergenic 20.0%
!! AATCAGCAAGAATAATATTA+AGG + chr5_3:9976316-9976335 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTTGTTG+GGG - chr5_3:9976349-9976368 Msa0797750:intron 20.0%
!! TAAATAAACAAGGTAAAATC+TGG + chr5_3:9976386-9976405 None:intergenic 20.0%
!! AAAAAGAATAACTCAACAAT+TGG + chr5_3:9976412-9976431 None:intergenic 20.0%
!!! ATTTTATTCATTAACTTCCT+AGG + chr5_3:9977181-9977200 None:intergenic 20.0%
!!! TGTATTCTTTTTTATCTGTT+TGG - chr5_3:9977233-9977252 Msa0797750:intron 20.0%
!!! ATTTTTTGTTGAATAGGTTC+TGG - chr5_3:9972244-9972263 Msa0797750:three_prime_UTR 25.0%
! AACCATTTCTATAATCAAAG+AGG - chr5_3:9972474-9972493 Msa0797750:intron 25.0%
! ACCATTTCTATAATCAAAGA+GGG - chr5_3:9972475-9972494 Msa0797750:intron 25.0%
! AATTAAGTGCTATGTGAAAA+GGG + chr5_3:9972710-9972729 None:intergenic 25.0%
! AAATTAAGTGCTATGTGAAA+AGG + chr5_3:9972711-9972730 None:intergenic 25.0%
!! TAGCACTTAATTTCAGTTTT+AGG - chr5_3:9972718-9972737 Msa0797750:CDS 25.0%
! CTAACACAAACAAATAGAAT+AGG + chr5_3:9973111-9973130 None:intergenic 25.0%
! ATGATTAGAAGGATTCATTA+GGG - chr5_3:9973287-9973306 Msa0797750:intron 25.0%
! TATACGATAAATAGGAATCA+GGG - chr5_3:9973338-9973357 Msa0797750:intron 25.0%
! GAGTAATAAAAATTGGATGA+AGG + chr5_3:9973499-9973518 None:intergenic 25.0%
! CACATTAGAAGGAAAAAATT+GGG - chr5_3:9973722-9973741 Msa0797750:CDS 25.0%
! TGGTAGATTGACTATTAAAT+AGG - chr5_3:9973917-9973936 Msa0797750:intron 25.0%
! GGTAGATTGACTATTAAATA+GGG - chr5_3:9973918-9973937 Msa0797750:intron 25.0%
! AAACTGATGTGTTCAAAAAT+GGG + chr5_3:9974157-9974176 None:intergenic 25.0%
! TAAACTGATGTGTTCAAAAA+TGG + chr5_3:9974158-9974177 None:intergenic 25.0%
!! TTTTGAACACATCAGTTTAT+AGG - chr5_3:9974159-9974178 Msa0797750:intron 25.0%
! ATATCTTTGCAAATAGCTTT+AGG + chr5_3:9974323-9974342 None:intergenic 25.0%
! TATTTGCAAAGATATCAGTT+TGG - chr5_3:9974328-9974347 Msa0797750:intron 25.0%
!! CTGTATAATACCAATTTTCA+CGG - chr5_3:9974718-9974737 Msa0797750:intron 25.0%
!! TGTATAATACCAATTTTCAC+GGG - chr5_3:9974719-9974738 Msa0797750:intron 25.0%
! ACATCAACTTAAACATCATT+TGG - chr5_3:9974837-9974856 Msa0797750:intron 25.0%
! TAACATCATGCTACATATTT+GGG + chr5_3:9974981-9975000 None:intergenic 25.0%
! ATAACATCATGCTACATATT+TGG + chr5_3:9974982-9975001 None:intergenic 25.0%
! AAATATGTAGCATGATGTTA+TGG - chr5_3:9974981-9975000 Msa0797750:intron 25.0%
! AATATGTAGCATGATGTTAT+GGG - chr5_3:9974982-9975001 Msa0797750:intron 25.0%
!! ATTTGTTTGATAACCTGATA+AGG + chr5_3:9975008-9975027 None:intergenic 25.0%
! TATCAGGTTATCAAACAAAT+AGG - chr5_3:9975008-9975027 Msa0797750:intron 25.0%
! CAGATAAAATACATGCAATA+AGG + chr5_3:9975079-9975098 None:intergenic 25.0%
!! TATTGCATGTATTTTATCTG+AGG - chr5_3:9975079-9975098 Msa0797750:intron 25.0%
! GTTCAATTATTTGATACAGA+TGG - chr5_3:9975375-9975394 Msa0797750:intron 25.0%
! TTGTTCCACAATATGATATT+TGG - chr5_3:9975479-9975498 Msa0797750:intron 25.0%
! TAGTACCAAATATCATATTG+TGG + chr5_3:9975487-9975506 None:intergenic 25.0%
! TTGGTACTATTGTCAAATAA+TGG - chr5_3:9975498-9975517 Msa0797750:intron 25.0%
! TGGTACTATTGTCAAATAAT+GGG - chr5_3:9975499-9975518 Msa0797750:intron 25.0%
! AGGATCAGTTTGATTAATTA+AGG - chr5_3:9975621-9975640 Msa0797750:intron 25.0%
! AAGTCAATATGTACTTCAAA+GGG + chr5_3:9975770-9975789 None:intergenic 25.0%
! AAAGTCAATATGTACTTCAA+AGG + chr5_3:9975771-9975790 None:intergenic 25.0%
! AATATGAGGAAAGTAACAAA+AGG - chr5_3:9975957-9975976 Msa0797750:intron 25.0%
! GCAATGTTACAATAAAGTTA+TGG - chr5_3:9975979-9975998 Msa0797750:intron 25.0%
! CAATTGGTTGTAAATAAACA+AGG + chr5_3:9976396-9976415 None:intergenic 25.0%
! TTTCAACATATAAAAACACC+AGG + chr5_3:9976505-9976524 None:intergenic 25.0%
!! CTCAATTTTCAACAGAAAAA+AGG + chr5_3:9976781-9976800 None:intergenic 25.0%
! ACAAATACAATAGATCTAAG+AGG + chr5_3:9976824-9976843 None:intergenic 25.0%
!! GATCTATTGTATTTGTCTTT+TGG - chr5_3:9976828-9976847 Msa0797750:intron 25.0%
! AAAGAATACAAAATTGAAGG+AGG + chr5_3:9977223-9977242 None:intergenic 25.0%
!! TGAACTTTGATGTAATTTTG+TGG - chr5_3:9977416-9977435 Msa0797750:intron 25.0%
!! GAACTTTGATGTAATTTTGT+GGG - chr5_3:9977417-9977436 Msa0797750:intron 25.0%
!! AACTTTGATGTAATTTTGTG+GGG - chr5_3:9977418-9977437 Msa0797750:intron 25.0%
!!! AATGATTAGTCTTGTATGAT+TGG - chr5_3:9977523-9977542 Msa0797750:five_prime_UTR 25.0%
!!! ATGATTAGTCTTGTATGATT+GGG - chr5_3:9977524-9977543 Msa0797750:five_prime_UTR 25.0%
! TTGTATGATTGGGAATTAAA+CGG - chr5_3:9977534-9977553 Msa0797750:five_prime_UTR 25.0%
AGAAAAAACAATGGGATTGT+GGG - chr5_3:9972165-9972184 Msa0797750:three_prime_UTR 30.0%
CACTGCTAATATCAAAGTTT+CGG + chr5_3:9972374-9972393 None:intergenic 30.0%
TTGGGTAATCAGCTTAATTA+AGG - chr5_3:9972413-9972432 Msa0797750:intron 30.0%
TGGGTAATCAGCTTAATTAA+GGG - chr5_3:9972414-9972433 Msa0797750:intron 30.0%
TCCCTCTTTGATTATAGAAA+TGG + chr5_3:9972479-9972498 None:intergenic 30.0%
AAGCAGATTAATGCAATCAA+AGG + chr5_3:9972686-9972705 None:intergenic 30.0%
!!! TTTCAGTTTTAGGTTGTCTT+TGG - chr5_3:9972728-9972747 Msa0797750:intron 30.0%
TCAAAATGCATGAGCTTATT+AGG - chr5_3:9972815-9972834 Msa0797750:intron 30.0%
AGATGGAGTTATCTCTTATA+GGG - chr5_3:9972878-9972897 Msa0797750:intron 30.0%
TACAGCAACAACATTTACAA+GGG + chr5_3:9972926-9972945 None:intergenic 30.0%
TTACAGCAACAACATTTACA+AGG + chr5_3:9972927-9972946 None:intergenic 30.0%
! TTTGTTTGTGTTAGTCTGTT+AGG - chr5_3:9973117-9973136 Msa0797750:intron 30.0%
! TTGTTTGTGTTAGTCTGTTA+GGG - chr5_3:9973118-9973137 Msa0797750:intron 30.0%
CAGATAGTTAATACATACGT+GGG - chr5_3:9973220-9973239 Msa0797750:intron 30.0%
GATGATTAGAAGGATTCATT+AGG - chr5_3:9973286-9973305 Msa0797750:intron 30.0%
CTATACGATAAATAGGAATC+AGG - chr5_3:9973337-9973356 Msa0797750:intron 30.0%
CTCTTCAATGAATAATGCAA+AGG - chr5_3:9973452-9973471 Msa0797750:intron 30.0%
! TCCAATTTTTATTACTCCCT+CGG - chr5_3:9973502-9973521 Msa0797750:intron 30.0%
GCACATTAGAAGGAAAAAAT+TGG - chr5_3:9973721-9973740 Msa0797750:CDS 30.0%
TTGACTATTAAATAGGGAAG+AGG - chr5_3:9973924-9973943 Msa0797750:intron 30.0%
ATTAAATAGGGAAGAGGTTA+AGG - chr5_3:9973930-9973949 Msa0797750:intron 30.0%
TTATATCCAGTATCACTGAT+TGG - chr5_3:9973975-9973994 Msa0797750:intron 30.0%
! TATAGCGGAAATGAGAATTA+GGG + chr5_3:9974062-9974081 None:intergenic 30.0%
TGTGTTCAAAAATGGGATTT+GGG + chr5_3:9974150-9974169 None:intergenic 30.0%
ATGTGTTCAAAAATGGGATT+TGG + chr5_3:9974151-9974170 None:intergenic 30.0%
CAGTTTATAGGAACTACAAA+TGG - chr5_3:9974171-9974190 Msa0797750:intron 30.0%
TTATAGGAACTACAAATGGT+TGG - chr5_3:9974175-9974194 Msa0797750:intron 30.0%
!! TTGCAAATAGCTTTAGGAAT+AGG + chr5_3:9974317-9974336 None:intergenic 30.0%
TATCAGTTTGGACTTCATTA+AGG - chr5_3:9974340-9974359 Msa0797750:intron 30.0%
TGCATTAAAATGCTCCTATT+TGG - chr5_3:9974437-9974456 Msa0797750:intron 30.0%
! TTTTTGCGTGAGAATTAGTT+AGG - chr5_3:9974478-9974497 Msa0797750:intron 30.0%
TGAGAATTAGTTAGGTTACT+TGG - chr5_3:9974486-9974505 Msa0797750:intron 30.0%
GAGAATTAGTTAGGTTACTT+GGG - chr5_3:9974487-9974506 Msa0797750:intron 30.0%
! GAGAGATTTTCAATACATAC+AGG - chr5_3:9974574-9974593 Msa0797750:intron 30.0%
GACTTGATATACAGAAATGA+AGG - chr5_3:9974811-9974830 Msa0797750:intron 30.0%
AACTTAAACATCATTTGGCA+GGG - chr5_3:9974842-9974861 Msa0797750:intron 30.0%
ATTGTCCATTGTGTATACAA+GGG - chr5_3:9974929-9974948 Msa0797750:intron 30.0%
AACATCATGCTACATATTTG+GGG + chr5_3:9974980-9974999 None:intergenic 30.0%
AGATTTGTCAGTATAGATGA+TGG - chr5_3:9975187-9975206 Msa0797750:intron 30.0%
TGATCTGATTATAATAGACC+AGG - chr5_3:9975212-9975231 Msa0797750:intron 30.0%
! GATTATAATAGACCAGGTTT+TGG - chr5_3:9975218-9975237 Msa0797750:intron 30.0%
TGATCTGATTATAATAGACC+AGG - chr5_3:9975212-9975231 Msa0797750:intron 30.0%
GATTATAATAGACCAGGTTT+CGG - chr5_3:9975218-9975237 Msa0797750:intron 30.0%
AATTATTTGATACAGATGGG+AGG - chr5_3:9975379-9975398 Msa0797750:intron 30.0%
GGTAGTTCAGTGTTAAATAA+CGG - chr5_3:9975405-9975424 Msa0797750:intron 30.0%
TCAGTGTTAAATAACGGTTA+TGG - chr5_3:9975411-9975430 Msa0797750:intron 30.0%
!!! CAGTTTTTTTAGCAGTTAGA+AGG - chr5_3:9975601-9975620 Msa0797750:intron 30.0%
AAGATGGTACTGTATAGATT+AGG - chr5_3:9975661-9975680 Msa0797750:intron 30.0%
GTATAGATTAGGATCTAAGT+AGG - chr5_3:9975672-9975691 Msa0797750:intron 30.0%
GATCCCGTTAAAAAAAATAC+AGG - chr5_3:9975712-9975731 Msa0797750:intron 30.0%
! ATGAAGTTTTCTATCTCTCA+AGG - chr5_3:9975887-9975906 Msa0797750:intron 30.0%
! TGAAGTTTTCTATCTCTCAA+GGG - chr5_3:9975888-9975907 Msa0797750:intron 30.0%
ACAATAAAGTTATGGGATCT+TGG - chr5_3:9975987-9976006 Msa0797750:intron 30.0%
CAATAAAGTTATGGGATCTT+GGG - chr5_3:9975988-9976007 Msa0797750:intron 30.0%
AATAAAGTTATGGGATCTTG+GGG - chr5_3:9975989-9976008 Msa0797750:intron 30.0%
GTTTGTTTCATACACAATAG+CGG + chr5_3:9976063-9976082 None:intergenic 30.0%
GAAACAAACTTCTTATCTTC+TGG - chr5_3:9976074-9976093 Msa0797750:intron 30.0%
TAGTTGAGCATAACTATGTT+CGG + chr5_3:9976446-9976465 None:intergenic 30.0%
!!! TGCTCAACTACTGATTTTTT+AGG - chr5_3:9976456-9976475 Msa0797750:intron 30.0%
ACATATAAAAACACCAGGAA+AGG + chr5_3:9976500-9976519 None:intergenic 30.0%
!!! TTCTCTACGCTTTTTCATAT+AGG + chr5_3:9976537-9976556 None:intergenic 30.0%
!! TTAACGAAATCGATTTGTAC+AGG + chr5_3:9976565-9976584 None:intergenic 30.0%
CTTGATTATCTCACAAAATG+TGG - chr5_3:9976655-9976674 Msa0797750:intron 30.0%
! CAATTCTGAAAAGTCTTGAT+TGG - chr5_3:9976728-9976747 Msa0797750:intron 30.0%
!!! ATGCATTTTTTCTCTTTAGC+TGG - chr5_3:9976878-9976897 Msa0797750:intron 30.0%
TTATCTGAATTCGTGAAACT+TGG - chr5_3:9976907-9976926 Msa0797750:intron 30.0%
CTTGATATGCTAAGATTATC+TGG + chr5_3:9976984-9977003 None:intergenic 30.0%
TCTTAACAGCCAGAATAAAA+GGG + chr5_3:9977137-9977156 None:intergenic 30.0%
AGAGCAATAAAGGATTAAAG+TGG - chr5_3:9977154-9977173 Msa0797750:intron 30.0%
! AGTTTCTTAGCTCTTTGATT+TGG + chr5_3:9977385-9977404 None:intergenic 30.0%
TGTATGATTGGGAATTAAAC+GGG - chr5_3:9977535-9977554 Msa0797750:five_prime_UTR 30.0%
GAGAAAAAACAATGGGATTG+TGG - chr5_3:9972164-9972183 Msa0797750:three_prime_UTR 35.0%
CAGCTTAATTAAGGGCTTAT+TGG - chr5_3:9972422-9972441 Msa0797750:intron 35.0%
CTATAATCAAAGAGGGAATG+CGG - chr5_3:9972482-9972501 Msa0797750:intron 35.0%
CGGTCAAACTGTATTTATGT+AGG - chr5_3:9972502-9972521 Msa0797750:intron 35.0%
GCACTTGGAAGAACTTATTT+AGG + chr5_3:9972624-9972643 None:intergenic 35.0%
GAGATGGAGTTATCTCTTAT+AGG - chr5_3:9972877-9972896 Msa0797750:intron 35.0%
!! TTATATTGCTTTTAGACCGG+TGG - chr5_3:9973022-9973041 Msa0797750:intron 35.0%
! TCTGTTAGGGTATTAGCAAA+TGG - chr5_3:9973131-9973150 Msa0797750:intron 35.0%
! CTGTTAGGGTATTAGCAAAT+GGG - chr5_3:9973132-9973151 Msa0797750:intron 35.0%
! TGTTAGGGTATTAGCAAATG+GGG - chr5_3:9973133-9973152 Msa0797750:intron 35.0%
TATACGAGAAGTAAGAGTAG+TGG - chr5_3:9973188-9973207 Msa0797750:intron 35.0%
CCACGTATGTATTAACTATC+TGG + chr5_3:9973222-9973241 None:intergenic 35.0%
CCAGATAGTTAATACATACG+TGG - chr5_3:9973219-9973238 Msa0797750:intron 35.0%
!! AGTTTGTTATTGTGGTAGTC+AGG - chr5_3:9973257-9973276 Msa0797750:intron 35.0%
TGATGCTAATATTCTACCGT+TGG + chr5_3:9973690-9973709 None:intergenic 35.0%
TATTAGCATCAAGCAGCTTA+TGG - chr5_3:9973699-9973718 Msa0797750:CDS 35.0%
TTAGAAGGAAAAAATTGGGC+TGG - chr5_3:9973726-9973745 Msa0797750:CDS 35.0%
!!! CTAGGTTTTGGCTAAAAAAG+TGG - chr5_3:9973873-9973892 Msa0797750:intron 35.0%
CTGGATATAAGATCAAGAGA+TGG + chr5_3:9973965-9973984 None:intergenic 35.0%
! GTATAGCGGAAATGAGAATT+AGG + chr5_3:9974063-9974082 None:intergenic 35.0%
GCTAGCACAGTAATTAGTAA+TGG + chr5_3:9974234-9974253 None:intergenic 35.0%
! ACTTAATGCACTGACAAGTA+TGG + chr5_3:9974259-9974278 None:intergenic 35.0%
!! ATAGCTTTAGGAATAGGAAG+AGG + chr5_3:9974311-9974330 None:intergenic 35.0%
CAACTTAAACATCATTTGGC+AGG - chr5_3:9974841-9974860 Msa0797750:intron 35.0%
CTTGTATACACAATGGACAA+TGG + chr5_3:9974930-9974949 None:intergenic 35.0%
CATTGTCCATTGTGTATACA+AGG - chr5_3:9974928-9974947 Msa0797750:intron 35.0%
! GCATGTATTTTATCTGAGGA+AGG - chr5_3:9975083-9975102 Msa0797750:intron 35.0%
! ATTTTATCTGAGGAAGGTCT+TGG - chr5_3:9975089-9975108 Msa0797750:intron 35.0%
! TTTTATCTGAGGAAGGTCTT+GGG - chr5_3:9975090-9975109 Msa0797750:intron 35.0%
TGTTATCTACTGACATCAAG+AGG - chr5_3:9975133-9975152 Msa0797750:intron 35.0%
! TTTCGGTGTAGATATTCTAC+AGG - chr5_3:9975266-9975285 Msa0797750:intron 35.0%
! TTCGGTGTAGATATTCTACA+GGG - chr5_3:9975267-9975286 Msa0797750:intron 35.0%
!! TTTTGAAGGTGCATACAAGA+AGG - chr5_3:9975334-9975353 Msa0797750:intron 35.0%
GTGTTAAATAACGGTTATGG+CGG - chr5_3:9975414-9975433 Msa0797750:intron 35.0%
GCTATAGCAATGTATCATAG+CGG - chr5_3:9975438-9975457 Msa0797750:intron 35.0%
ACAAAGTCATAGTTGCAAGA+TGG - chr5_3:9975645-9975664 Msa0797750:intron 35.0%
! AGTAGTTCTGCTGTGTAATA+AGG - chr5_3:9975737-9975756 Msa0797750:intron 35.0%
ATCTGTTCTTATCTGATTGC+AGG - chr5_3:9975926-9975945 Msa0797750:intron 35.0%
ATAAAGTTATGGGATCTTGG+GGG - chr5_3:9975990-9976009 Msa0797750:intron 35.0%
! AAGGTAAAATCTGGTAGTGA+TGG + chr5_3:9976377-9976396 None:intergenic 35.0%
AGTTGAGCATAACTATGTTC+GGG + chr5_3:9976445-9976464 None:intergenic 35.0%
! CAAGACTTTTCAGAATTGAG+CGG + chr5_3:9976726-9976745 None:intergenic 35.0%
ATTGAGTGGTATCCCTTTAT+TGG - chr5_3:9977037-9977056 Msa0797750:intron 35.0%
TGTTTCCCAACACCAATAAA+GGG + chr5_3:9977052-9977071 None:intergenic 35.0%
TTGTTTCCCAACACCAATAA+AGG + chr5_3:9977053-9977072 None:intergenic 35.0%
CTCTTAACAGCCAGAATAAA+AGG + chr5_3:9977138-9977157 None:intergenic 35.0%
TAAAGGATTAAAGTGGTCCT+AGG - chr5_3:9977161-9977180 Msa0797750:intron 35.0%
CTCAATTCTGGATTTAGTAG+TGG - chr5_3:9977442-9977461 Msa0797750:intron 35.0%
TAATCATTACTAAGCACCTG+AGG + chr5_3:9977511-9977530 None:intergenic 35.0%
ACGGGATAAAATACATGTCA+AGG - chr5_3:9977553-9977572 Msa0797750:five_prime_UTR 35.0%
CGGGATAAAATACATGTCAA+GGG - chr5_3:9977554-9977573 Msa0797750:five_prime_UTR 35.0%
! CACAGAATTTCTTTTGTGAG+AGG - chr5_3:9977632-9977651 Msa0797750:five_prime_UTR 35.0%
! TCTTTTGTGAGAGGAATTGA+TGG - chr5_3:9977641-9977660 Msa0797750:five_prime_UTR 35.0%
GATAATAGAGTGCAAAGCGA+GGG - chr5_3:9971994-9972013 Msa0797750:three_prime_UTR 40.0%
!! ATTAGCAGTGTCGACGTATT+AGG - chr5_3:9972384-9972403 Msa0797750:CDS 40.0%
!! TTAGCAGTGTCGACGTATTA+GGG - chr5_3:9972385-9972404 Msa0797750:CDS 40.0%
AAAGTGATCCACTTAGCACA+GGG + chr5_3:9972793-9972812 None:intergenic 40.0%
CGTGAAGCATAACTTACTGT+AGG + chr5_3:9973067-9973086 None:intergenic 40.0%
! GAGAAGTAAGAGTAGTGGAA+AGG - chr5_3:9973193-9973212 Msa0797750:intron 40.0%
TATTGTGGTAGTCAGGACTT+AGG - chr5_3:9973264-9973283 Msa0797750:intron 40.0%
CAGGACTTAGGATGATTAGA+AGG - chr5_3:9973276-9973295 Msa0797750:intron 40.0%
ACGATAAATAGGAATCAGGG+AGG - chr5_3:9973341-9973360 Msa0797750:intron 40.0%
AGTTCAAGACAACCAACTGA+GGG + chr5_3:9973429-9973448 None:intergenic 40.0%
AAGTTCAAGACAACCAACTG+AGG + chr5_3:9973430-9973449 None:intergenic 40.0%
GCCGAGGGAGTAATAAAAAT+TGG + chr5_3:9973506-9973525 None:intergenic 40.0%
TGATGCACTTGAACCATCAA+TGG - chr5_3:9973587-9973606 Msa0797750:intron 40.0%
! ACACTGACTACTTCCATTGA+TGG + chr5_3:9973603-9973622 None:intergenic 40.0%
CATAACACCGGATTAACACT+TGG - chr5_3:9973641-9973660 Msa0797750:CDS 40.0%
AAGTCTGCCAAGTGTTAATC+CGG + chr5_3:9973651-9973670 None:intergenic 40.0%
! AACACTTGGCAGACTTTTGA+TGG - chr5_3:9973655-9973674 Msa0797750:CDS 40.0%
TTGATGGAGTATACGACCAA+CGG - chr5_3:9973671-9973690 Msa0797750:CDS 40.0%
!!! GGAAAAAATTGGGCTGGTTT+TGG - chr5_3:9973732-9973751 Msa0797750:intron 40.0%
GAAACCATCGACAACTCTTA+AGG - chr5_3:9973766-9973785 Msa0797750:intron 40.0%
TCAATCTACCACCTTGTTAG+AGG + chr5_3:9973908-9973927 None:intergenic 40.0%
AGTCAACCAATCAGTGATAC+TGG + chr5_3:9973984-9974003 None:intergenic 40.0%
! TATCACTGATTGGTTGACTG+AGG - chr5_3:9973985-9974004 Msa0797750:intron 40.0%
CAAGACCTTGAGAAAAACTC+TGG - chr5_3:9974020-9974039 Msa0797750:intron 40.0%
! GTCATCCAGAGTTTTTCTCA+AGG + chr5_3:9974028-9974047 None:intergenic 40.0%
AATGAGAATTAGGGTCCTTC+TGG + chr5_3:9974053-9974072 None:intergenic 40.0%
TTTCCGCTATACTAATGAGC+AGG - chr5_3:9974071-9974090 Msa0797750:intron 40.0%
TTCCGCTATACTAATGAGCA+GGG - chr5_3:9974072-9974091 Msa0797750:intron 40.0%
CTACAAATGGTTGGCACATT+TGG - chr5_3:9974184-9974203 Msa0797750:intron 40.0%
GGACTTCATTAAGGTTGTTG+AGG - chr5_3:9974349-9974368 Msa0797750:intron 40.0%
CCAGTATGGTATCATATCGT+TGG + chr5_3:9974376-9974395 None:intergenic 40.0%
CCAACGATATGATACCATAC+TGG - chr5_3:9974373-9974392 Msa0797750:intron 40.0%
ACGATATGATACCATACTGG+TGG - chr5_3:9974376-9974395 Msa0797750:intron 40.0%
CTCCTATTTGGAAAGAGTTG+TGG - chr5_3:9974449-9974468 Msa0797750:intron 40.0%
TGCCACAACTCTTTCCAAAT+AGG + chr5_3:9974454-9974473 None:intergenic 40.0%
TCATGAGCATGAGCAAATTC+TGG - chr5_3:9974548-9974567 Msa0797750:intron 40.0%
AGGACTGTTGAATCAGACAT+TGG - chr5_3:9974624-9974643 Msa0797750:intron 40.0%
ATTTCACTTCAGAGCAGCAA+AGG - chr5_3:9974662-9974681 Msa0797750:intron 40.0%
TTTCACTTCAGAGCAGCAAA+GGG - chr5_3:9974663-9974682 Msa0797750:intron 40.0%
ACCATTCAAGGTGGTTTATG+TGG - chr5_3:9974756-9974775 Msa0797750:intron 40.0%
ACCACATAAACCACCTTGAA+TGG + chr5_3:9974760-9974779 None:intergenic 40.0%
CCTATCCCTTGTATACACAA+TGG + chr5_3:9974937-9974956 None:intergenic 40.0%
CCATTGTGTATACAAGGGAT+AGG - chr5_3:9974934-9974953 Msa0797750:intron 40.0%
! ATGATGTTATGGGCCTTATC+AGG - chr5_3:9974992-9975011 Msa0797750:intron 40.0%
TTTATCTGAGGAAGGTCTTG+GGG - chr5_3:9975091-9975110 Msa0797750:intron 40.0%
AATCAGATCAGACCAAAACC+TGG + chr5_3:9975233-9975252 None:intergenic 40.0%
AGAATATCTACACCGAAACC+TGG + chr5_3:9975264-9975283 None:intergenic 40.0%
ACAGGGTTAATGTTAGTGAC+AGG - chr5_3:9975284-9975303 Msa0797750:intron 40.0%
TTAATGTTAGTGACAGGCAG+TGG - chr5_3:9975290-9975309 Msa0797750:intron 40.0%
TTTGATACAGATGGGAGGAA+CGG - chr5_3:9975384-9975403 Msa0797750:intron 40.0%
GTAGGATTCGAGAACAGAAA+CGG - chr5_3:9975690-9975709 Msa0797750:intron 40.0%
TGTTCTTATCTGATTGCAGG+TGG - chr5_3:9975929-9975948 Msa0797750:intron 40.0%
GTTCTTATCTGATTGCAGGT+GGG - chr5_3:9975930-9975949 Msa0797750:intron 40.0%
TAAAGTTATGGGATCTTGGG+GGG - chr5_3:9975991-9976010 Msa0797750:intron 40.0%
TGTGTGTGTGTGTTTCACAT+AGG - chr5_3:9976132-9976151 Msa0797750:intron 40.0%
! TGTGTTTCACATAGGAGCAT+TGG - chr5_3:9976140-9976159 Msa0797750:intron 40.0%
ACAAAGACAACGCTCAAAGA+AGG + chr5_3:9976590-9976609 None:intergenic 40.0%
! TCTTTGAGCGTTGTCTTTGT+CGG - chr5_3:9976590-9976609 Msa0797750:intron 40.0%
TGAAAATTGAGATGCTGCCA+AGG - chr5_3:9976790-9976809 Msa0797750:CDS 40.0%
AAAGGGATACCACTCAATGA+TGG + chr5_3:9977035-9977054 None:intergenic 40.0%
TGGTATCCCTTTATTGGTGT+TGG - chr5_3:9977043-9977062 Msa0797750:intron 40.0%
! GGTATCCCTTTATTGGTGTT+GGG - chr5_3:9977044-9977063 Msa0797750:intron 40.0%
GTTGGGAAACAAGATTGACA+AGG - chr5_3:9977061-9977080 Msa0797750:intron 40.0%
GAAACAAGATTGACAAGGCA+GGG - chr5_3:9977066-9977085 Msa0797750:intron 40.0%
AAACAAGATTGACAAGGCAG+GGG - chr5_3:9977067-9977086 Msa0797750:intron 40.0%
ACGCGTATCTTACATTTGGT+CGG + chr5_3:9977114-9977133 None:intergenic 40.0%
CTGGCTGTTAAGAGCAATAA+AGG - chr5_3:9977144-9977163 Msa0797750:intron 40.0%
GTCAATAACAGAGTCGATGT+TGG + chr5_3:9977346-9977365 None:intergenic 40.0%
!! ACATCGACTCTGTTATTGAC+TGG - chr5_3:9977346-9977365 Msa0797750:intron 40.0%
! ATTTTGTGGGGACTCAATTC+TGG - chr5_3:9977430-9977449 Msa0797750:intron 40.0%
!! TGCATGTCTAACTCTGAGAT+TGG - chr5_3:9977469-9977488 Msa0797750:intron 40.0%
TTTATCCTTTCCCTTTCCTC+AGG - chr5_3:9977492-9977511 Msa0797750:CDS 40.0%
TTACTAAGCACCTGAGGAAA+GGG + chr5_3:9977505-9977524 None:intergenic 40.0%
ATTACTAAGCACCTGAGGAA+AGG + chr5_3:9977506-9977525 None:intergenic 40.0%
GCTGGTCATTTGAAAGAAAC+AGG + chr5_3:9977688-9977707 None:intergenic 40.0%
TTCAAATGACCAGCAATGTG+TGG - chr5_3:9977694-9977713 Msa0797750:five_prime_UTR 40.0%
! AATTTAAGGCCACACATTGC+TGG + chr5_3:9977706-9977725 None:intergenic 40.0%
CGATAATAGAGTGCAAAGCG+AGG - chr5_3:9971993-9972012 Msa0797750:three_prime_UTR 45.0%
! TGTGGGAAGCTTTTCTGAAC+TGG - chr5_3:9972182-9972201 Msa0797750:three_prime_UTR 45.0%
! CTTTTCTGAACTGGTTACGC+AGG - chr5_3:9972191-9972210 Msa0797750:three_prime_UTR 45.0%
TCGACGTATTAGGGTGAGTT+TGG - chr5_3:9972394-9972413 Msa0797750:CDS 45.0%
CGACGTATTAGGGTGAGTTT+GGG - chr5_3:9972395-9972414 Msa0797750:CDS 45.0%
TTCTTCCAAGTGCACCCTTA+GGG - chr5_3:9972631-9972650 Msa0797750:CDS 45.0%
! TTTATCCCTAAGGGTGCACT+TGG + chr5_3:9972639-9972658 None:intergenic 45.0%
TTAGCACAGGGCATGCATAT+AGG + chr5_3:9972781-9972800 None:intergenic 45.0%
GAAAGTGATCCACTTAGCAC+AGG + chr5_3:9972794-9972813 None:intergenic 45.0%
! TTGCAGCCTTTTCTTCAAGC+AGG - chr5_3:9972855-9972874 Msa0797750:intron 45.0%
CCATCTCCTGCTTGAAGAAA+AGG + chr5_3:9972864-9972883 None:intergenic 45.0%
! CCTTTTCTTCAAGCAGGAGA+TGG - chr5_3:9972861-9972880 Msa0797750:intron 45.0%
CTTATAGGGCTTCAGAATGC+TGG - chr5_3:9972892-9972911 Msa0797750:intron 45.0%
TAGCAAATGGGGCAGTAGTA+AGG - chr5_3:9973144-9973163 Msa0797750:intron 45.0%
AAATGGGGCAGTAGTAAGGA+GGG - chr5_3:9973148-9973167 Msa0797750:intron 45.0%
GTAAGGAGGGAAGGATTTGA+AGG - chr5_3:9973161-9973180 Msa0797750:intron 45.0%
!! AGGGTACAGTTCTAAGTGAC+AGG - chr5_3:9973306-9973325 Msa0797750:intron 45.0%
AGGAATCAGGGAGGACAAAA+AGG - chr5_3:9973350-9973369 Msa0797750:intron 45.0%
GGAATCAGGGAGGACAAAAA+GGG - chr5_3:9973351-9973370 Msa0797750:intron 45.0%
AACGTTCCTGCTGTGTAACA+AGG - chr5_3:9973396-9973415 Msa0797750:intron 45.0%
ACGTTCCTGCTGTGTAACAA+GGG - chr5_3:9973397-9973416 Msa0797750:intron 45.0%
GATTTCCCTTGTTACACAGC+AGG + chr5_3:9973405-9973424 None:intergenic 45.0%
ACCACTAATTGTGAAGCCGA+GGG + chr5_3:9973521-9973540 None:intergenic 45.0%
AACCACTAATTGTGAAGCCG+AGG + chr5_3:9973522-9973541 None:intergenic 45.0%
! TTTTCCTGAGCTGAAGACAC+TGG - chr5_3:9973545-9973564 Msa0797750:intron 45.0%
TTATCCAGTGTCTTCAGCTC+AGG + chr5_3:9973552-9973571 None:intergenic 45.0%
GCTGAAGACACTGGATAACA+TGG - chr5_3:9973554-9973573 Msa0797750:intron 45.0%
GAAGACACTGGATAACATGG+AGG - chr5_3:9973557-9973576 Msa0797750:intron 45.0%
GGTGGCTAACAACATAACAC+CGG - chr5_3:9973629-9973648 Msa0797750:CDS 45.0%
GCAGCTTATGGCACATTAGA+AGG - chr5_3:9973711-9973730 Msa0797750:CDS 45.0%
CCATCCTTAAGAGTTGTCGA+TGG + chr5_3:9973773-9973792 None:intergenic 45.0%
CCATCGACAACTCTTAAGGA+TGG - chr5_3:9973770-9973789 Msa0797750:intron 45.0%
! GATGGATCAATTGCCACTTG+AGG - chr5_3:9973788-9973807 Msa0797750:intron 45.0%
! TCAATTGCCACTTGAGGACA+AGG - chr5_3:9973794-9973813 Msa0797750:intron 45.0%
! GCAATGGTGAAGCTAGGTTT+TGG - chr5_3:9973861-9973880 Msa0797750:intron 45.0%
GGAATTGCTCACCTCTAACA+AGG - chr5_3:9973894-9973913 Msa0797750:intron 45.0%
ATTGCTCACCTCTAACAAGG+TGG - chr5_3:9973897-9973916 Msa0797750:intron 45.0%
ATTGGTTGACTGAGGAGTTC+AGG - chr5_3:9973993-9974012 Msa0797750:intron 45.0%
AACTCTGGATGACTTCCAGA+AGG - chr5_3:9974035-9974054 Msa0797750:intron 45.0%
TCCGCTATACTAATGAGCAG+GGG - chr5_3:9974073-9974092 Msa0797750:intron 45.0%
TCCCCTGCTCATTAGTATAG+CGG + chr5_3:9974077-9974096 None:intergenic 45.0%
TTTGGGAATCCAAGCACAAG+AGG + chr5_3:9974133-9974152 None:intergenic 45.0%
!! CACATTTGGTGCAGTGGTTA+GGG - chr5_3:9974198-9974217 Msa0797750:intron 45.0%
!! ACATTTGGTGCAGTGGTTAG+GGG - chr5_3:9974199-9974218 Msa0797750:intron 45.0%
ATACCATACTGGTGGTTGAC+TGG - chr5_3:9974384-9974403 Msa0797750:intron 45.0%
! GTGGTTGACTGGTTGTTTAC+AGG - chr5_3:9974395-9974414 Msa0797750:intron 45.0%
AGCAGGTTGTACACCATTCA+AGG - chr5_3:9974744-9974763 Msa0797750:intron 45.0%
AGGTTGTACACCATTCAAGG+TGG - chr5_3:9974747-9974766 Msa0797750:intron 45.0%
ATGCAACCACAAACTTCTGC+AGG + chr5_3:9974789-9974808 None:intergenic 45.0%
AAACCTGCTAGCATCCAAGA+AGG - chr5_3:9974904-9974923 Msa0797750:intron 45.0%
ACAATGGACAATGGCCTTCT+TGG + chr5_3:9974921-9974940 None:intergenic 45.0%
AGGTGAATTTGATGCTGCTC+AGG + chr5_3:9975059-9975078 None:intergenic 45.0%
AGGTGCATACAAGAAGGTAG+AGG - chr5_3:9975340-9975359 Msa0797750:intron 45.0%
TACAAGAAGGTAGAGGTTGC+TGG - chr5_3:9975347-9975366 Msa0797750:intron 45.0%
! CAATCACGGACTGCAGAAAA+TGG + chr5_3:9975561-9975580 None:intergenic 45.0%
TGCAGGTGGGATTCAATATG+AGG - chr5_3:9975943-9975962 Msa0797750:intron 45.0%
AGTAACGTTCCCACATGCTA+CGG + chr5_3:9976028-9976047 None:intergenic 45.0%
TATTGCCTAGCAATCGACTG+AGG - chr5_3:9976278-9976297 Msa0797750:intron 45.0%
! CTTTGAGCGTTGTCTTTGTC+GGG - chr5_3:9976591-9976610 Msa0797750:intron 45.0%
TCTAAGAGGCAGAGAATCCT+TGG + chr5_3:9976810-9976829 None:intergenic 45.0%
GGAAACAAGATTGACAAGGC+AGG - chr5_3:9977065-9977084 Msa0797750:intron 45.0%
AGGGACGCGTATCTTACATT+TGG + chr5_3:9977118-9977137 None:intergenic 45.0%
! GATACGCGTCCCTTTTATTC+TGG - chr5_3:9977125-9977144 Msa0797750:intron 45.0%
!! GTTTGGTTCTAAGTGCTCTC+TGG - chr5_3:9977250-9977269 Msa0797750:intron 45.0%
CAAAGCGAGGGAAGAAGGAT+AGG - chr5_3:9972006-9972025 Msa0797750:three_prime_UTR 50.0%
GTTCTTCCAAGTGCACCCTT+AGG - chr5_3:9972630-9972649 Msa0797750:CDS 50.0%
TATGCATGCCCTGTGCTAAG+TGG - chr5_3:9972782-9972801 Msa0797750:intron 50.0%
CAAATGGGGCAGTAGTAAGG+AGG - chr5_3:9973147-9973166 Msa0797750:intron 50.0%
CAAGGGAAATCTCCCTCAGT+TGG - chr5_3:9973414-9973433 Msa0797750:intron 50.0%
TCCCTCGGCTTCACAATTAG+TGG - chr5_3:9973517-9973536 Msa0797750:intron 50.0%
! TTGCCACTTGAGGACAAGGA+TGG - chr5_3:9973798-9973817 Msa0797750:intron 50.0%
TTGAGGACAAGGATGGCAGA+TGG - chr5_3:9973805-9973824 Msa0797750:intron 50.0%
AATGGTCAGGGATCTCTGAG+CGG - chr5_3:9973839-9973858 Msa0797750:intron 50.0%
CAGGGGAACTTGCACTACAA+GGG - chr5_3:9974090-9974109 Msa0797750:intron 50.0%
GGAACTTGCACTACAAGGGT+AGG - chr5_3:9974094-9974113 Msa0797750:intron 50.0%
CTTGCACTACAAGGGTAGGA+TGG - chr5_3:9974098-9974117 Msa0797750:intron 50.0%
TGCTAACAGCCTCTTGTGCT+TGG - chr5_3:9974121-9974140 Msa0797750:intron 50.0%
!! GCACATTTGGTGCAGTGGTT+AGG - chr5_3:9974197-9974216 Msa0797750:intron 50.0%
CAACCAGTCAACCACCAGTA+TGG + chr5_3:9974390-9974409 None:intergenic 50.0%
GAGCATGAGCAAATTCTGGC+AGG - chr5_3:9974552-9974571 Msa0797750:intron 50.0%
!! CTGCATTGACTCTGATGAGC+AGG - chr5_3:9974600-9974619 Msa0797750:intron 50.0%
! ATTGACTCTGATGAGCAGGC+AGG - chr5_3:9974604-9974623 Msa0797750:intron 50.0%
ACAGACACTCTGCCCAAGTA+AGG + chr5_3:9974702-9974721 None:intergenic 50.0%
! ACCAATTTTCACGGGACAGC+AGG - chr5_3:9974727-9974746 Msa0797750:intron 50.0%
ACCTGCTGTCCCGTGAAAAT+TGG + chr5_3:9974731-9974750 None:intergenic 50.0%
TGCACACCTGCAGAAGTTTG+TGG - chr5_3:9974780-9974799 Msa0797750:intron 50.0%
TGCTAGCAGGTTTCGTATGC+TGG + chr5_3:9974897-9974916 None:intergenic 50.0%
CAAGGGATAGGACATACGAG+TGG - chr5_3:9974946-9974965 Msa0797750:intron 50.0%
CACCACATTCTGCACTGCAT+TGG - chr5_3:9975159-9975178 Msa0797750:intron 50.0%
AGCCAATGCAGTGCAGAATG+TGG + chr5_3:9975164-9975183 None:intergenic 50.0%
!! CAGAAGGGGGAAGGTTTTGA+AGG - chr5_3:9975320-9975339 Msa0797750:intron 50.0%
AGAAGGTAGAGGTTGCTGGA+AGG - chr5_3:9975351-9975370 Msa0797750:intron 50.0%
! TCACGGACTGCAGAAAATGG+TGG + chr5_3:9975558-9975577 None:intergenic 50.0%
AACCTAGGTTCCGTAGCATG+TGG - chr5_3:9976015-9976034 Msa0797750:intron 50.0%
ACCTAGGTTCCGTAGCATGT+GGG - chr5_3:9976016-9976035 Msa0797750:intron 50.0%
CTGAGCAAGCCATCATTGAG+TGG - chr5_3:9977023-9977042 Msa0797750:intron 50.0%
!! TGGTTCTAAGTGCTCTCTGG+TGG - chr5_3:9977253-9977272 Msa0797750:intron 50.0%
AAGCACCTGAGGAAAGGGAA+AGG + chr5_3:9977500-9977519 None:intergenic 50.0%
GAGTGCAAAGCGAGGGAAGA+AGG - chr5_3:9972001-9972020 Msa0797750:three_prime_UTR 55.0%
GCGAGGGAAGAAGGATAGGA+AGG - chr5_3:9972010-9972029 Msa0797750:three_prime_UTR 55.0%
TTAGACCGGTGGATACAGCG+AGG - chr5_3:9973033-9973052 Msa0797750:intron 55.0%
CATGTCCTCGCTGTATCCAC+CGG + chr5_3:9973041-9973060 None:intergenic 55.0%
GGAAGTAGTCAGTGTCGCAG+AGG - chr5_3:9973608-9973627 Msa0797750:intron 55.0%
AGTAGTCAGTGTCGCAGAGG+TGG - chr5_3:9973611-9973630 Msa0797750:intron 55.0%
CTGCCATCCTTGTCCTCAAG+TGG + chr5_3:9973804-9973823 None:intergenic 55.0%
AGGACAAGGATGGCAGATGG+AGG - chr5_3:9973808-9973827 Msa0797750:intron 55.0%
GGACAAGGATGGCAGATGGA+GGG - chr5_3:9973809-9973828 Msa0797750:intron 55.0%
GACAAGGATGGCAGATGGAG+GGG - chr5_3:9973810-9973829 Msa0797750:intron 55.0%
GATGGCAGATGGAGGGGAAT+GGG - chr5_3:9973816-9973835 Msa0797750:intron 55.0%
CAGATGGAGGGGAATGGGAA+TGG - chr5_3:9973821-9973840 Msa0797750:intron 55.0%
GAGGGGAATGGGAATGGTCA+GGG - chr5_3:9973827-9973846 Msa0797750:intron 55.0%
TGAGCGGCAATGGTGAAGCT+AGG - chr5_3:9973855-9973874 Msa0797750:intron 55.0%
GCAGGGGAACTTGCACTACA+AGG - chr5_3:9974089-9974108 Msa0797750:intron 55.0%
!! GGTTGGCACATTTGGTGCAG+TGG - chr5_3:9974192-9974211 Msa0797750:intron 55.0%
GTGCAGTGGTTAGGGGTGAA+AGG - chr5_3:9974206-9974225 Msa0797750:intron 55.0%
GGAAGAGGTAGCAAGCTTGC+AGG + chr5_3:9974296-9974315 None:intergenic 55.0%
GCAGGTTTCGTATGCTGGTC+TGG + chr5_3:9974892-9974911 None:intergenic 55.0%
TGGCCTTCTTGGATGCTAGC+AGG + chr5_3:9974910-9974929 None:intergenic 55.0%
GGATAGGACATACGAGTGGC+AGG - chr5_3:9974950-9974969 Msa0797750:intron 55.0%
ATAACACTGCTCCCACCTCC+TGG + chr5_3:9975119-9975138 None:intergenic 55.0%
TCCCACATGCTACGGAACCT+AGG + chr5_3:9976020-9976039 None:intergenic 55.0%
GTGGGAACGTTACTGTCGTG+CGG - chr5_3:9976034-9976053 Msa0797750:intron 55.0%
TGCCTAGCAATCGACTGAGG+TGG - chr5_3:9976281-9976300 Msa0797750:intron 55.0%
CACCACCTCAGTCGATTGCT+AGG + chr5_3:9976286-9976305 None:intergenic 55.0%
GGAAAGGCTCTTCACTCAGC+AGG + chr5_3:9976484-9976503 None:intergenic 55.0%
GCTGAGTGAAGAGCCTTTCC+TGG - chr5_3:9976484-9976503 Msa0797750:intron 55.0%
AGCGTTGTCTTTGTCGGGCA+AGG - chr5_3:9976596-9976615 Msa0797750:intron 55.0%
! TAAGTGCTCTCTGGTGGTGC+AGG - chr5_3:9977259-9977278 Msa0797750:intron 55.0%
! AAGTGCTCTCTGGTGGTGCA+GGG - chr5_3:9977260-9977279 Msa0797750:intron 55.0%
GGGGCAGTAGTAAGGAGGGA+AGG - chr5_3:9973152-9973171 Msa0797750:intron 60.0%
GGATGGCAGATGGAGGGGAA+TGG - chr5_3:9973815-9973834 Msa0797750:intron 60.0%
GGAGGGGAATGGGAATGGTC+AGG - chr5_3:9973826-9973845 Msa0797750:intron 60.0%
CAGGGATCTCTGAGCGGCAA+TGG - chr5_3:9973845-9973864 Msa0797750:intron 60.0%
AGGCAGTGGCAGCAGTCAGA+AGG - chr5_3:9975304-9975323 Msa0797750:intron 60.0%
GGCAGTGGCAGCAGTCAGAA+GGG - chr5_3:9975305-9975324 Msa0797750:intron 60.0%
GCAGTGGCAGCAGTCAGAAG+GGG - chr5_3:9975306-9975325 Msa0797750:intron 60.0%
CAGTGGCAGCAGTCAGAAGG+GGG - chr5_3:9975307-9975326 Msa0797750:intron 60.0%
! GAGGAAGGTCTTGGGGCACC+AGG - chr5_3:9975098-9975117 Msa0797750:intron 65.0%
! GAAGGTCTTGGGGCACCAGG+AGG - chr5_3:9975101-9975120 Msa0797750:intron 65.0%
! GTCTTGGGGCACCAGGAGGT+GGG - chr5_3:9975105-9975124 Msa0797750:intron 65.0%
GGCAGCAGTCAGAAGGGGGA+AGG - chr5_3:9975311-9975330 Msa0797750:intron 65.0%
GGGATCTTGGGGGGCAACCT+AGG - chr5_3:9976000-9976019 Msa0797750:intron 65.0%
! GGTCTTGGGGCACCAGGAGG+TGG - chr5_3:9975104-9975123 Msa0797750:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9971966 9977731 9971966 ID=Msa0797750;Name=Msa0797750
chr5_3 mRNA 9971966 9977731 9971966 ID=Msa0797750-mRNA-1;Parent=Msa0797750;Name=Msa0797750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=209|1|1|1|1|1|6|333|184
chr5_3 exon 9971966 9972416 9971966 ID=Msa0797750-mRNA-1:exon:4266;Parent=Msa0797750-mRNA-1
chr5_3 exon 9972577 9972738 9972577 ID=Msa0797750-mRNA-1:exon:4265;Parent=Msa0797750-mRNA-1
chr5_3 exon 9973628 9973749 9973628 ID=Msa0797750-mRNA-1:exon:4264;Parent=Msa0797750-mRNA-1
chr5_3 exon 9976628 9976660 9976628 ID=Msa0797750-mRNA-1:exon:4263;Parent=Msa0797750-mRNA-1
chr5_3 exon 9976755 9976836 9976755 ID=Msa0797750-mRNA-1:exon:4262;Parent=Msa0797750-mRNA-1
chr5_3 exon 9977485 9977731 9977485 ID=Msa0797750-mRNA-1:exon:4261;Parent=Msa0797750-mRNA-1
chr5_3 five_prime_UTR 9977523 9977731 9977523 ID=Msa0797750-mRNA-1:five_prime_utr;Parent=Msa0797750-mRNA-1
chr5_3 CDS 9977485 9977522 9977485 ID=Msa0797750-mRNA-1:cds;Parent=Msa0797750-mRNA-1
chr5_3 CDS 9976755 9976836 9976755 ID=Msa0797750-mRNA-1:cds;Parent=Msa0797750-mRNA-1
chr5_3 CDS 9976628 9976660 9976628 ID=Msa0797750-mRNA-1:cds;Parent=Msa0797750-mRNA-1
chr5_3 CDS 9973628 9973749 9973628 ID=Msa0797750-mRNA-1:cds;Parent=Msa0797750-mRNA-1
chr5_3 CDS 9972577 9972738 9972577 ID=Msa0797750-mRNA-1:cds;Parent=Msa0797750-mRNA-1
chr5_3 CDS 9972299 9972416 9972299 ID=Msa0797750-mRNA-1:cds;Parent=Msa0797750-mRNA-1
chr5_3 three_prime_UTR 9971966 9972298 9971966 ID=Msa0797750-mRNA-1:three_prime_utr;Parent=Msa0797750-mRNA-1
Gene Sequence

>Msa0797750

ATGGGATTGTGGGAAGCTTTTCTGAACTGGTTACGCAGCCTTTTCTTCAAGCAGGAGATGGAGTTATCTCTTATAGGGCTTCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACCGGTGGATACAGCGAGGACATGATTCCTACAGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATAAAGTTATGGGATCTTGGGGGGCAACCTAGGTTCCGTAGCATGTGGGAACGTTACTGTCGTGCGGTTTCCGCTATTGTTTATGTTGTTGATGCTGCTGATCCAGATAATCTTAGCATATCAAGAAGTGAACTTCATGATTTGCTGAGCAAGCCATCATTGAGTGGTATCCCTTTATTGGTGTTGGGAAACAAGATTGACAAGGCAGGGGCTCTGTCTAAACAAGCTTTGACCGACCAAATGGATCTGAAATCAATTACTGATAGAGAAGTTTGTTGCTTCATGATCTCGTGCAAAAACTCAACCAACATCGACTCTGTTATTGACTGGCTTGTGAAGCATTCCAAATCAAAGAGCTAA

Protein sequence

>Msa0797750

MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKAGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*