AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042280 MtrunA17_Chr1g0190961 100.000 137 0 0 1 137 1 137 2.00e-96 273
Msa0042280 MtrunA17_Chr7g0273831 85.401 137 19 1 1 137 1 136 4.90e-80 232
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042280 AT5G28060.1 87.121 132 17 0 1 132 1 132 4.14e-84 242
Msa0042280 AT3G04920.1 90.152 132 13 0 1 132 1 132 9.01e-77 224
Msa0042280 AT3G04920.2 85.437 103 14 1 1 102 1 103 7.60e-53 162

Find 50 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGTTCAGAACTCATTT+TGG 0.192309 1_1:+73080281 Msa0042280:CDS
TTTAACAGAATTCTCAAAAT+TGG 0.248098 1_1:-73081721 None:intergenic
GGTGGCAAGTCCACTGGTTT+TGG 0.267395 1_1:+73080305 Msa0042280:CDS
ACCCTAACAAGTCTGTATTT+TGG 0.279167 1_1:-73080368 None:intergenic
CCTGTTTGTCATGAATTTCC+TGG 0.293677 1_1:-73078466 None:intergenic
TTGCTGTTGGTAGTTTCTTA+AGG 0.335656 1_1:+73081587 Msa0042280:three_prime_UTR
AACCAAAATACAGACTTGTT+AGG 0.354436 1_1:+73080366 Msa0042280:CDS
CTAACAATCCACAATCAAAA+AGG 0.377651 1_1:-73081790 None:intergenic
AAATGAAGGAAAGAAAGAAC+AGG 0.391792 1_1:+73081367 Msa0042280:CDS
TTGGACACATTTGCCCTCCC+TGG 0.411146 1_1:-73079613 None:intergenic
CTTGGCAGCATCACCAGCCT+TGG 0.412083 1_1:-73081511 None:intergenic
AAAACTCACAAATTGCTTCC+TGG 0.412532 1_1:-73078496 None:intergenic
GTCATTGATGTTCTTCATCC+AGG 0.419765 1_1:+73079595 Msa0042280:CDS
GCTGGTGATGCTGCCAAGGC+TGG 0.425056 1_1:+73081516 Msa0042280:CDS
CAACACTATAACCATGTAAA+CGG 0.433061 1_1:-73081846 None:intergenic
TTTGGAGGTGGCAAGTCCAC+TGG 0.458362 1_1:+73080299 Msa0042280:CDS
TTCTCAAAATTGGTCACTGC+TGG 0.474339 1_1:-73081711 None:intergenic
TTATTTCTTCTTGCCAGCCT+TGG 0.476966 1_1:-73081529 None:intergenic
TACTCGCAAGACGGCTGCAC+AGG 0.477121 1_1:-73078366 None:intergenic
TGCAGCCGTCTTGCGAGTAG+TGG 0.482657 1_1:+73078370 Msa0042280:five_prime_UTR
CCAGGAAATTCATGACAAAC+AGG 0.483747 1_1:+73078466 Msa0042280:CDS
TGACAAACAGGCTTCTCTCC+AGG 0.487847 1_1:+73078478 Msa0042280:CDS
GGCTGAGCTAAAGGAGAAGC+TGG 0.492085 1_1:+73080217 Msa0042280:intron
GTAGAATGGACTTGATACTA+AGG 0.495750 1_1:+73081326 Msa0042280:intron
CAAGGCTGGTGATGCTGCCA+AGG 0.500785 1_1:+73081512 Msa0042280:CDS
GCTCAATAGAACCGTTTACA+TGG 0.504068 1_1:+73081835 Msa0042280:three_prime_UTR
ACCAAAATACAGACTTGTTA+GGG 0.511637 1_1:+73080367 Msa0042280:CDS
AATCATAACCATGGCGGACA+AGG 0.511646 1_1:+73078428 Msa0042280:exon
GAAGATCCGTGGAGTTAAGA+AGG 0.518538 1_1:+73081395 Msa0042280:CDS
AGCTAAAGGAGAAGCTGGCT+AGG 0.550489 1_1:+73080222 Msa0042280:CDS
ATACTAAGGTTGAAAAGTCA+AGG 0.557383 1_1:+73081340 Msa0042280:CDS
GGCTAGGATTTATGATGTGA+AGG 0.559469 1_1:+73080238 Msa0042280:CDS
TGGTGTGAAGGCTGAGCTAA+AGG 0.565585 1_1:+73080208 Msa0042280:intron
GCTTTACCTTCTTAACTCCA+CGG 0.569745 1_1:-73081401 None:intergenic
TCATTGATGTTCTTCATCCA+GGG 0.571853 1_1:+73079596 Msa0042280:CDS
AAAGTCAAGGAAGCAAATGA+AGG 0.574321 1_1:+73081353 Msa0042280:CDS
GTATTCTGCATCTCCATCAC+CGG 0.581764 1_1:+73078398 Msa0042280:five_prime_UTR
TGTCACTGCCTTGTCCGCCA+TGG 0.587558 1_1:-73078436 None:intergenic
CAGGTTGAGAAGATGAAATG+AGG 0.591380 1_1:-73078347 None:intergenic
GCAGCCGTCTTGCGAGTAGT+GGG 0.596180 1_1:+73078371 Msa0042280:five_prime_UTR
AGGGAGGGCAAATGTGTCCA+AGG 0.599653 1_1:+73079615 Msa0042280:CDS
TGATGTTCTTCATCCAGGGA+GGG 0.609379 1_1:+73079600 Msa0042280:CDS
AACAGGGCAAAGAAGATCCG+TGG 0.612698 1_1:+73081384 Msa0042280:CDS
TACTCCCACTACTCGCAAGA+CGG 0.619083 1_1:-73078375 None:intergenic
AGGCAGTGACAATCAGAACC+AGG 0.646151 1_1:+73078448 Msa0042280:CDS
ATAGATCAAACCAAAACCAG+TGG 0.662445 1_1:-73080315 None:intergenic
TTGATGTTCTTCATCCAGGG+AGG 0.668249 1_1:+73079599 Msa0042280:CDS
GGCGCCGAAAATCATAACCA+TGG 0.672140 1_1:+73078419 Msa0042280:exon
AATGAAGGAAAGAAAGAACA+GGG 0.674567 1_1:+73081368 Msa0042280:CDS
GCCGAAAATCATAACCATGG+CGG 0.753498 1_1:+73078422 Msa0042280:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACAAATTTAAATCAAT+AGG - chr1_1:73081257-73081276 None:intergenic 10.0%
!!! GTTTTTATTTTAAATGGATT+AGG + chr1_1:73079196-73079215 Msa0042280:intron 15.0%
!!! ATATTATAGTTTTCTTTTCT+TGG + chr1_1:73079735-73079754 Msa0042280:intron 15.0%
!! ATATATAAAACAAGAAACAT+AGG - chr1_1:73079930-73079949 None:intergenic 15.0%
!! GTATTATAAACTTATGATAT+TGG + chr1_1:73080157-73080176 Msa0042280:intron 15.0%
!! CTTGAAAAAAATAAATGAAT+AGG - chr1_1:73080768-73080787 None:intergenic 15.0%
!! AATGATTGAAATTAAATGTA+GGG - chr1_1:73080923-73080942 None:intergenic 15.0%
!! AAATGATTGAAATTAAATGT+AGG - chr1_1:73080924-73080943 None:intergenic 15.0%
!!! TTAAATAGTTTTTTCTAGAA+TGG + chr1_1:73081623-73081642 Msa0042280:three_prime_UTR 15.0%
!! TTATGAAGAAATAGATAACA+AGG - chr1_1:73078527-73078546 None:intergenic 20.0%
!!! GTTTTTATTGAAAAAGGTTA+TGG - chr1_1:73078666-73078685 None:intergenic 20.0%
!!! TAACCTTTTTCAATAAAAAC+CGG + chr1_1:73078666-73078685 Msa0042280:intron 20.0%
!! TCTAAACCAGTAAATTTAAA+TGG + chr1_1:73079130-73079149 Msa0042280:intron 20.0%
!! AGTTTACCATTTAAATTTAC+TGG - chr1_1:73079139-73079158 None:intergenic 20.0%
!! AGTAAATTTAAATGGTAAAC+TGG + chr1_1:73079138-73079157 Msa0042280:intron 20.0%
!!! TCTGGTTTTTTTTTGTTTTT+TGG + chr1_1:73079164-73079183 Msa0042280:intron 20.0%
!!! CTGGTTTTTTTTTGTTTTTT+GGG + chr1_1:73079165-73079184 Msa0042280:intron 20.0%
!!! GGTTTGGTTTTTATTTTAAA+TGG + chr1_1:73079190-73079209 Msa0042280:intron 20.0%
!! TACAAAACAATCAAAAGATT+TGG - chr1_1:73079385-73079404 None:intergenic 20.0%
!!! CTATCATTTTTTTTATAGTG+TGG + chr1_1:73079489-73079508 Msa0042280:intron 20.0%
!!! AGGGTTTTATATTATGTTAT+TGG + chr1_1:73079523-73079542 Msa0042280:intron 20.0%
!! TGTATGTTTATATGTTAGAT+AGG + chr1_1:73079640-73079659 Msa0042280:intron 20.0%
!! TTAATTGCATTTCTATATGT+AGG + chr1_1:73079803-73079822 Msa0042280:intron 20.0%
!! TTTGATCATTCCTTTATATT+TGG + chr1_1:73079875-73079894 Msa0042280:intron 20.0%
!! AATATATCAGCCAAATATAA+AGG - chr1_1:73079888-73079907 None:intergenic 20.0%
!!! ATTATGCCTTATTATTGATT+TGG + chr1_1:73079958-73079977 Msa0042280:intron 20.0%
!! CTATTACCAAATCAATAATA+AGG - chr1_1:73079967-73079986 None:intergenic 20.0%
!! CAATTTCATACAGTATTATT+TGG + chr1_1:73080053-73080072 Msa0042280:intron 20.0%
!! CAAATAAACCACAAAAAAAA+AGG - chr1_1:73080440-73080459 None:intergenic 20.0%
!! AAAAAACAAACAAATCCATT+TGG - chr1_1:73080575-73080594 None:intergenic 20.0%
!!! AATGGATTTGTTTGTTTTTT+CGG + chr1_1:73080575-73080594 Msa0042280:intron 20.0%
!! TTTAACAGAATTCTCAAAAT+TGG - chr1_1:73081724-73081743 None:intergenic 20.0%
!!! TAACCGGTTTTTATTGAAAA+AGG - chr1_1:73078672-73078691 None:intergenic 25.0%
! ACTGTTATTGAAAACATAAC+CGG - chr1_1:73078688-73078707 None:intergenic 25.0%
! AATACCAAATTTAGTTGAAC+TGG + chr1_1:73078725-73078744 Msa0042280:intron 25.0%
! AAAACCAGTTCAACTAAATT+TGG - chr1_1:73078732-73078751 None:intergenic 25.0%
!! GATTTTACAATGAAGGTTAT+TGG - chr1_1:73078845-73078864 None:intergenic 25.0%
!! ATTTGAGATTTGGGATTAAA+GGG + chr1_1:73078952-73078971 Msa0042280:intron 25.0%
!!! TAAATTTACTGGTTTAGAAC+CGG - chr1_1:73079128-73079147 None:intergenic 25.0%
!!! TTTTTTTTTGTTTTTTGGGC+TGG + chr1_1:73079169-73079188 Msa0042280:intron 25.0%
!!! TGGATTAGGTTTTTCAAATA+TGG + chr1_1:73079210-73079229 Msa0042280:intron 25.0%
!!! GGATTAGGTTTTTCAAATAT+GGG + chr1_1:73079211-73079230 Msa0042280:intron 25.0%
! TTAGCATATAATCACAACTA+GGG - chr1_1:73079285-73079304 None:intergenic 25.0%
! ATTAGCATATAATCACAACT+AGG - chr1_1:73079286-73079305 None:intergenic 25.0%
! ATAGTGTGATTCAGATAATT+AGG + chr1_1:73079419-73079438 Msa0042280:intron 25.0%
! TAGTGTGATTCAGATAATTA+GGG + chr1_1:73079420-73079439 Msa0042280:intron 25.0%
! ACATATAAACATACATACCT+TGG - chr1_1:73079635-73079654 None:intergenic 25.0%
!!! CTTTCTAGCTTTCTAATTAA+AGG + chr1_1:73079765-73079784 Msa0042280:intron 25.0%
! AAACTCAAACGTATATTGTA+TGG - chr1_1:73079991-73080010 None:intergenic 25.0%
!! GATTTACCTTTTATTGTGTT+TGG + chr1_1:73080188-73080207 Msa0042280:intron 25.0%
! TGAATACAAAAACAGTGTTT+GGG - chr1_1:73080265-73080284 None:intergenic 25.0%
! TTGAATACAAAAACAGTGTT+TGG - chr1_1:73080266-73080285 None:intergenic 25.0%
!!! CTTTGAAACCTTTTTTTTTG+TGG + chr1_1:73080429-73080448 Msa0042280:intron 25.0%
! AACATAAATGTTAACAACCA+GGG - chr1_1:73080530-73080549 None:intergenic 25.0%
!!! TTGTTTGTTTTTTCGGAATT+TGG + chr1_1:73080582-73080601 Msa0042280:intron 25.0%
!! TATTTCTGTTAAATAGTTCC+TGG + chr1_1:73080854-73080873 Msa0042280:intron 25.0%
! TAGTTTAGAGATAATTTAGC+TGG + chr1_1:73080992-73081011 Msa0042280:intron 25.0%
!! CAAGAGAGTACATAATTATA+GGG - chr1_1:73081028-73081047 None:intergenic 25.0%
!! TCAAGAGAGTACATAATTAT+AGG - chr1_1:73081029-73081048 None:intergenic 25.0%
!! TCTTTTCTTCTATTGTAGAA+TGG + chr1_1:73081312-73081331 Msa0042280:intron 25.0%
!!! GTCATTTTGTTATGATATCA+AGG + chr1_1:73081559-73081578 Msa0042280:three_prime_UTR 25.0%
!!! AATAGTTTTTTCTAGAATGG+AGG + chr1_1:73081626-73081645 Msa0042280:three_prime_UTR 25.0%
ACGAGATCTGATTTCAATTA+GGG - chr1_1:73078551-73078570 None:intergenic 30.0%
TACGAGATCTGATTTCAATT+AGG - chr1_1:73078552-73078571 None:intergenic 30.0%
TATTCAACTCCATTGTGATT+AGG + chr1_1:73078582-73078601 Msa0042280:intron 30.0%
ATTCAACTCCATTGTGATTA+GGG + chr1_1:73078583-73078602 Msa0042280:intron 30.0%
! ACCAGATCAATTTTATGGTT+CGG + chr1_1:73078633-73078652 Msa0042280:intron 30.0%
! TATGTTTTCAATAACAGTCC+AGG + chr1_1:73078690-73078709 Msa0042280:intron 30.0%
!!! GGTATTTTTTATAGTAGACC+TGG - chr1_1:73078711-73078730 None:intergenic 30.0%
ATGTTAAAGTCGTGATTGTT+AGG - chr1_1:73078796-73078815 None:intergenic 30.0%
! GATTTGAGATTTGGGATTAA+AGG + chr1_1:73078951-73078970 Msa0042280:intron 30.0%
TCAAATCATAAACACAACGA+CGG - chr1_1:73079055-73079074 None:intergenic 30.0%
!!! TAAATGGTAAACTGGTTTTC+TGG + chr1_1:73079146-73079165 Msa0042280:intron 30.0%
TAGCATATAATCACAACTAG+GGG - chr1_1:73079284-73079303 None:intergenic 30.0%
ATAGTGTGGTTCAGATAATT+AGG + chr1_1:73079503-73079522 Msa0042280:intron 30.0%
TAGTGTGGTTCAGATAATTA+GGG + chr1_1:73079504-73079523 Msa0042280:intron 30.0%
! ACAATTTTATTCTGTGTTGC+AGG + chr1_1:73079573-73079592 Msa0042280:intron 30.0%
!! TATTTTCTAGTGCACAAACT+TGG - chr1_1:73079836-73079855 None:intergenic 30.0%
! ATAACTCTTGTCCATCTTTT+TGG + chr1_1:73080084-73080103 Msa0042280:intron 30.0%
AAATCCATTAGCCAAAAAGA+TGG - chr1_1:73080098-73080117 None:intergenic 30.0%
TTCACACCAAACACAATAAA+AGG - chr1_1:73080197-73080216 None:intergenic 30.0%
!!! TTTTATTGTGTTTGGTGTGA+AGG + chr1_1:73080196-73080215 Msa0042280:intron 30.0%
!! TTCAAGTTCAGAACTCATTT+TGG + chr1_1:73080281-73080300 Msa0042280:CDS 30.0%
! AACCAAAATACAGACTTGTT+AGG + chr1_1:73080366-73080385 Msa0042280:CDS 30.0%
!! ACCAAAATACAGACTTGTTA+GGG + chr1_1:73080367-73080386 Msa0042280:CDS 30.0%
! GTTAATTCTGTCTTTTCTCT+TGG + chr1_1:73080393-73080412 Msa0042280:intron 30.0%
! TGTCTTTTCTCTTGGATAAT+TGG + chr1_1:73080401-73080420 Msa0042280:intron 30.0%
CAACATAAATGTTAACAACC+AGG - chr1_1:73080531-73080550 None:intergenic 30.0%
CTGGTTGTTAACATTTATGT+TGG + chr1_1:73080529-73080548 Msa0042280:intron 30.0%
ACTAAATTCACAAGCAAATG+AGG - chr1_1:73080734-73080753 None:intergenic 30.0%
GATTGAAATTAAATGTAGGG+TGG - chr1_1:73080920-73080939 None:intergenic 30.0%
! TTTGCTTGTAGTGTTGTTAT+TGG + chr1_1:73081128-73081147 Msa0042280:intron 30.0%
!!! ACTTTTCTGAAATTTGCCAA+GGG + chr1_1:73081197-73081216 Msa0042280:intron 30.0%
GATTCATCAACTACATTAAC+AGG - chr1_1:73081232-73081251 None:intergenic 30.0%
ATACTAAGGTTGAAAAGTCA+AGG + chr1_1:73081340-73081359 Msa0042280:CDS 30.0%
AAATGAAGGAAAGAAAGAAC+AGG + chr1_1:73081367-73081386 Msa0042280:CDS 30.0%
AATGAAGGAAAGAAAGAACA+GGG + chr1_1:73081368-73081387 Msa0042280:CDS 30.0%
!! TATCAAGGTTATTTTGCTGT+TGG + chr1_1:73081574-73081593 Msa0042280:three_prime_UTR 30.0%
!! CTTAATCTCCTTTTTGATTG+TGG + chr1_1:73081782-73081801 Msa0042280:three_prime_UTR 30.0%
CTAACAATCCACAATCAAAA+AGG - chr1_1:73081793-73081812 None:intergenic 30.0%
CAACACTATAACCATGTAAA+CGG - chr1_1:73081849-73081868 None:intergenic 30.0%
AAAACTCACAAATTGCTTCC+TGG - chr1_1:73078499-73078518 None:intergenic 35.0%
TTCAACTCCATTGTGATTAG+GGG + chr1_1:73078584-73078603 Msa0042280:intron 35.0%
! AAATTGATCTGGTCTGGTTT+GGG - chr1_1:73078626-73078645 None:intergenic 35.0%
AAAATTGATCTGGTCTGGTT+TGG - chr1_1:73078627-73078646 None:intergenic 35.0%
! ACCAGACCAGATCAATTTTA+TGG + chr1_1:73078628-73078647 Msa0042280:intron 35.0%
ACCATAAAATTGATCTGGTC+TGG - chr1_1:73078632-73078651 None:intergenic 35.0%
ACCGAACCATAAAATTGATC+TGG - chr1_1:73078637-73078656 None:intergenic 35.0%
ACCTTCATTGTAAAATCTGC+TGG + chr1_1:73078848-73078867 Msa0042280:intron 35.0%
! ACCAGCAGATTTTACAATGA+AGG - chr1_1:73078852-73078871 None:intergenic 35.0%
ATCTTAGCTCGTTTCATAAC+TGG - chr1_1:73078916-73078935 None:intergenic 35.0%
!!! CTCAAATCAACGTTGCTTTT+GGG - chr1_1:73078939-73078958 None:intergenic 35.0%
!! TCTCAAATCAACGTTGCTTT+TGG - chr1_1:73078940-73078959 None:intergenic 35.0%
!! AGCAACGTTGATTTGAGATT+TGG + chr1_1:73078942-73078961 Msa0042280:intron 35.0%
!! GCAACGTTGATTTGAGATTT+GGG + chr1_1:73078943-73078962 Msa0042280:intron 35.0%
! GTGAAACCGATTTCAGATTT+GGG + chr1_1:73078974-73078993 Msa0042280:intron 35.0%
! CTAGATCCCAAATCTGAAAT+CGG - chr1_1:73078983-73079002 None:intergenic 35.0%
! GATTCCTGAGTTGAATAATC+CGG + chr1_1:73079106-73079125 Msa0042280:intron 35.0%
!!! TTTTGTTTTTTGGGCTGGTT+TGG + chr1_1:73079174-73079193 Msa0042280:intron 35.0%
!! TAGGTTTTTCAAATATGGGC+AGG + chr1_1:73079215-73079234 Msa0042280:intron 35.0%
AGTGTGATTCAGATACATAG+TGG + chr1_1:73079463-73079482 Msa0042280:intron 35.0%
TCATTGATGTTCTTCATCCA+GGG + chr1_1:73079596-73079615 Msa0042280:CDS 35.0%
! AGATGCTATTGAAACTTGCT+TGG + chr1_1:73079700-73079719 Msa0042280:intron 35.0%
ATAGGAAACTATCTGCTTGA+TGG - chr1_1:73079912-73079931 None:intergenic 35.0%
! GAGTTTCTCATTCGTCTTTT+TGG + chr1_1:73080005-73080024 Msa0042280:intron 35.0%
!!! TTGTCCATCTTTTTGGCTAA+TGG + chr1_1:73080091-73080110 Msa0042280:intron 35.0%
! AAGTTCAGAACTCATTTTGG+AGG + chr1_1:73080284-73080303 Msa0042280:CDS 35.0%
ATAGATCAAACCAAAACCAG+TGG - chr1_1:73080318-73080337 None:intergenic 35.0%
! ACCCTAACAAGTCTGTATTT+TGG - chr1_1:73080371-73080390 None:intergenic 35.0%
TTTCTCTTGGATAATTGGAC+TGG + chr1_1:73080406-73080425 Msa0042280:intron 35.0%
!! TGATTTAGTTTGCTATTCCC+TGG + chr1_1:73080510-73080529 Msa0042280:intron 35.0%
!! ACATCAGTGTTTTTGCCAAA+TGG + chr1_1:73080557-73080576 Msa0042280:intron 35.0%
!!! TGCACTTCCTTTTGATTTGA+CGG + chr1_1:73080814-73080833 Msa0042280:intron 35.0%
! CGTGTTTGTTAACAAGTGAA+GGG + chr1_1:73080889-73080908 Msa0042280:intron 35.0%
TAGTTATTTGTATTGCCTGC+TGG + chr1_1:73081154-73081173 Msa0042280:intron 35.0%
AGTTATTTGTATTGCCTGCT+GGG + chr1_1:73081155-73081174 Msa0042280:intron 35.0%
!!! CACTTTTCTGAAATTTGCCA+AGG + chr1_1:73081196-73081215 Msa0042280:intron 35.0%
CAACTACATTAACAGGCAAA+AGG - chr1_1:73081225-73081244 None:intergenic 35.0%
! GTAGAATGGACTTGATACTA+AGG + chr1_1:73081326-73081345 Msa0042280:intron 35.0%
AAAGTCAAGGAAGCAAATGA+AGG + chr1_1:73081353-73081372 Msa0042280:CDS 35.0%
!! CATTGTATTTTTGCAGACCA+AGG + chr1_1:73081494-73081513 Msa0042280:intron 35.0%
!! TTGCTGTTGGTAGTTTCTTA+AGG + chr1_1:73081587-73081606 Msa0042280:three_prime_UTR 35.0%
! CAGGTTGAGAAGATGAAATG+AGG - chr1_1:73078350-73078369 None:intergenic 40.0%
! TCCGCCATGGTTATGATTTT+CGG - chr1_1:73078426-73078445 None:intergenic 40.0%
CCTGTTTGTCATGAATTTCC+TGG - chr1_1:73078469-73078488 None:intergenic 40.0%
CCAGGAAATTCATGACAAAC+AGG + chr1_1:73078466-73078485 Msa0042280:CDS 40.0%
ATGAACACCCCTAATCACAA+TGG - chr1_1:73078594-73078613 None:intergenic 40.0%
GTTATTGGTGTGACTGAGAA+CGG - chr1_1:73078830-73078849 None:intergenic 40.0%
ACATCAAGTGCAGAAGATTG+AGG + chr1_1:73078875-73078894 Msa0042280:intron 40.0%
! GGTGAAACCGATTTCAGATT+TGG + chr1_1:73078973-73078992 Msa0042280:intron 40.0%
! TTTTTGCCGCCGTGTATTTT+CGG + chr1_1:73079005-73079024 Msa0042280:intron 40.0%
CATCAACGACCGAAAATACA+CGG - chr1_1:73079017-73079036 None:intergenic 40.0%
! ATTTTCGGTCGTTGATGTCA+TGG + chr1_1:73079020-73079039 Msa0042280:intron 40.0%
AGAACCGGATTATTCAACTC+AGG - chr1_1:73079113-73079132 None:intergenic 40.0%
! TTTTCAAATATGGGCAGGTG+TGG + chr1_1:73079220-73079239 Msa0042280:intron 40.0%
TGTGGTTGTTGATCTGGTTA+TGG + chr1_1:73079238-73079257 Msa0042280:intron 40.0%
! CTAGGGGTGTGCAAAAAATT+TGG - chr1_1:73079268-73079287 None:intergenic 40.0%
GTCATTGATGTTCTTCATCC+AGG + chr1_1:73079595-73079614 Msa0042280:CDS 40.0%
GGCTAGGATTTATGATGTGA+AGG + chr1_1:73080238-73080257 Msa0042280:CDS 40.0%
!! TTCAGAACTCATTTTGGAGG+TGG + chr1_1:73080287-73080306 Msa0042280:CDS 40.0%
TGGCAAAAACACTGATGTTG+AGG - chr1_1:73080555-73080574 None:intergenic 40.0%
! GGAAGTGCAAAGTCAAACAT+CGG - chr1_1:73080803-73080822 None:intergenic 40.0%
!!! GCACTTCCTTTTGATTTGAC+GGG + chr1_1:73080815-73080834 Msa0042280:intron 40.0%
! GCGTGTTTGTTAACAAGTGA+AGG + chr1_1:73080888-73080907 Msa0042280:intron 40.0%
ACAAATTCAAACGTGAGCAC+TGG - chr1_1:73081061-73081080 None:intergenic 40.0%
GCTTTACCTTCTTAACTCCA+CGG - chr1_1:73081404-73081423 None:intergenic 40.0%
! TTATTTCTTCTTGCCAGCCT+TGG - chr1_1:73081532-73081551 None:intergenic 40.0%
TTCTCAAAATTGGTCACTGC+TGG - chr1_1:73081714-73081733 None:intergenic 40.0%
GCTCAATAGAACCGTTTACA+TGG + chr1_1:73081835-73081854 Msa0042280:three_prime_UTR 40.0%
GTATTCTGCATCTCCATCAC+CGG + chr1_1:73078398-73078417 Msa0042280:five_prime_UTR 45.0%
! ATGGTTATGATTTTCGGCGC+CGG - chr1_1:73078420-73078439 None:intergenic 45.0%
GCCGAAAATCATAACCATGG+CGG + chr1_1:73078422-73078441 Msa0042280:exon 45.0%
!! AATCATAACCATGGCGGACA+AGG + chr1_1:73078428-73078447 Msa0042280:exon 45.0%
CTCGTTTCATAACTGGACAG+GGG - chr1_1:73078909-73078928 None:intergenic 45.0%
GCTCGTTTCATAACTGGACA+GGG - chr1_1:73078910-73078929 None:intergenic 45.0%
AGCTCGTTTCATAACTGGAC+AGG - chr1_1:73078911-73078930 None:intergenic 45.0%
CATAAACACAACGACGGTGA+TGG - chr1_1:73079049-73079068 None:intergenic 45.0%
TTGATGTTCTTCATCCAGGG+AGG + chr1_1:73079599-73079618 Msa0042280:CDS 45.0%
TGATGTTCTTCATCCAGGGA+GGG + chr1_1:73079600-73079619 Msa0042280:CDS 45.0%
TACGCTCCCGTCAAATCAAA+AGG - chr1_1:73080824-73080843 None:intergenic 45.0%
! TGATTTGACGGGAGCGTATT+TGG + chr1_1:73080826-73080845 Msa0042280:intron 45.0%
AACACGCTTATAACAGCACC+AGG - chr1_1:73080875-73080894 None:intergenic 45.0%
ACTGACAGAACTGACACTAC+TGG - chr1_1:73081084-73081103 None:intergenic 45.0%
GAAGATCCGTGGAGTTAAGA+AGG + chr1_1:73081395-73081414 Msa0042280:CDS 45.0%
!! GTATTTTTGCAGACCAAGGC+TGG + chr1_1:73081498-73081517 Msa0042280:intron 45.0%
TACTCCCACTACTCGCAAGA+CGG - chr1_1:73078378-73078397 None:intergenic 50.0%
! GGCGCCGAAAATCATAACCA+TGG + chr1_1:73078419-73078438 Msa0042280:exon 50.0%
AGGCAGTGACAATCAGAACC+AGG + chr1_1:73078448-73078467 Msa0042280:CDS 50.0%
TGACAAACAGGCTTCTCTCC+AGG + chr1_1:73078478-73078497 Msa0042280:CDS 50.0%
ATTGGTGTGACTGAGAACGG+CGG - chr1_1:73078827-73078846 None:intergenic 50.0%
CAACGACCGAAAATACACGG+CGG - chr1_1:73079014-73079033 None:intergenic 50.0%
TGGTGTGAAGGCTGAGCTAA+AGG + chr1_1:73080208-73080227 Msa0042280:intron 50.0%
AGCTAAAGGAGAAGCTGGCT+AGG + chr1_1:73080222-73080241 Msa0042280:CDS 50.0%
AAGTAGAACATGTGCCCAGC+AGG - chr1_1:73081172-73081191 None:intergenic 50.0%
TAACAGGCAAAAGGAGCCCT+TGG - chr1_1:73081216-73081235 None:intergenic 50.0%
AACAGGGCAAAGAAGATCCG+TGG + chr1_1:73081384-73081403 Msa0042280:CDS 50.0%
!!! ATGATTTTCGGCGCCGGTGA+TGG - chr1_1:73078414-73078433 None:intergenic 55.0%
GGCAGGTGTGGTTGTTGATC+TGG + chr1_1:73079232-73079251 Msa0042280:intron 55.0%
TTGGACACATTTGCCCTCCC+TGG - chr1_1:73079616-73079635 None:intergenic 55.0%
AGGGAGGGCAAATGTGTCCA+AGG + chr1_1:73079615-73079634 Msa0042280:CDS 55.0%
GGCTGAGCTAAAGGAGAAGC+TGG + chr1_1:73080217-73080236 Msa0042280:intron 55.0%
TTTGGAGGTGGCAAGTCCAC+TGG + chr1_1:73080299-73080318 Msa0042280:CDS 55.0%
!!! GGTGGCAAGTCCACTGGTTT+TGG + chr1_1:73080305-73080324 Msa0042280:CDS 55.0%
TACTCGCAAGACGGCTGCAC+AGG - chr1_1:73078369-73078388 None:intergenic 60.0%
TGCAGCCGTCTTGCGAGTAG+TGG + chr1_1:73078370-73078389 Msa0042280:five_prime_UTR 60.0%
GCAGCCGTCTTGCGAGTAGT+GGG + chr1_1:73078371-73078390 Msa0042280:five_prime_UTR 60.0%
TGTCACTGCCTTGTCCGCCA+TGG - chr1_1:73078439-73078458 None:intergenic 60.0%
CTTGGCAGCATCACCAGCCT+TGG - chr1_1:73081514-73081533 None:intergenic 60.0%
! CAAGGCTGGTGATGCTGCCA+AGG + chr1_1:73081512-73081531 Msa0042280:CDS 60.0%
! GCTGGTGATGCTGCCAAGGC+TGG + chr1_1:73081516-73081535 Msa0042280:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73078336 73081879 73078336 ID=Msa0042280;Name=Msa0042280
chr1_1 mRNA 73078336 73081879 73078336 ID=Msa0042280-mRNA-1;Parent=Msa0042280;Name=Msa0042280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=102|1|1|1|1|1|5|328|137
chr1_1 exon 73078336 73078509 73078336 ID=Msa0042280-mRNA-1:exon:24363;Parent=Msa0042280-mRNA-1
chr1_1 exon 73079595 73079636 73079595 ID=Msa0042280-mRNA-1:exon:24364;Parent=Msa0042280-mRNA-1
chr1_1 exon 73080218 73080388 73080218 ID=Msa0042280-mRNA-1:exon:24365;Parent=Msa0042280-mRNA-1
chr1_1 exon 73081330 73081416 73081330 ID=Msa0042280-mRNA-1:exon:24366;Parent=Msa0042280-mRNA-1
chr1_1 exon 73081510 73081879 73081510 ID=Msa0042280-mRNA-1:exon:24367;Parent=Msa0042280-mRNA-1
chr1_1 five_prime_UTR 73078336 73078437 73078336 ID=Msa0042280-mRNA-1:five_prime_utr;Parent=Msa0042280-mRNA-1
chr1_1 CDS 73078438 73078509 73078438 ID=Msa0042280-mRNA-1:cds;Parent=Msa0042280-mRNA-1
chr1_1 CDS 73079595 73079636 73079595 ID=Msa0042280-mRNA-1:cds;Parent=Msa0042280-mRNA-1
chr1_1 CDS 73080218 73080388 73080218 ID=Msa0042280-mRNA-1:cds;Parent=Msa0042280-mRNA-1
chr1_1 CDS 73081330 73081416 73081330 ID=Msa0042280-mRNA-1:cds;Parent=Msa0042280-mRNA-1
chr1_1 CDS 73081510 73081551 73081510 ID=Msa0042280-mRNA-1:cds;Parent=Msa0042280-mRNA-1
chr1_1 three_prime_UTR 73081552 73081879 73081552 ID=Msa0042280-mRNA-1:three_prime_utr;Parent=Msa0042280-mRNA-1
Gene Sequence

>Msa0042280

ATGGCGGACAAGGCAGTGACAATCAGAACCAGGAAATTCATGACAAACAGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCATCCAGGGAGGGCAAATGTGTCCAAGGCTGAGCTAAAGGAGAAGCTGGCTAGGATTTATGATGTGAAGGACCCAAACACTGTTTTTGTATTCAAGTTCAGAACTCATTTTGGAGGTGGCAAGTCCACTGGTTTTGGTTTGATCTATGATTCTGTTGAGAATGCAAAGAAGTATGAACCAAAATACAGACTTGTTAGGAATGGACTTGATACTAAGGTTGAAAAGTCAAGGAAGCAAATGAAGGAAAGAAAGAACAGGGCAAAGAAGATCCGTGGAGTTAAGAAGACCAAGGCTGGTGATGCTGCCAAGGCTGGCAAGAAGAAATAA

Protein sequence

>Msa0042280

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK*