AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1055410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055410 MtrunA17_Chr7g0226811 96.337 273 8 2 1 273 1 271 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1055410 AT5G40570.1 49.412 255 72 7 18 272 5 202 9.15e-65 201
Msa1055410 AT5G40570.2 48.092 262 72 8 18 272 5 209 7.24e-62 194
Msa1055410 AT5G14440.1 46.863 271 116 5 22 267 14 281 6.01e-58 187
Msa1055410 AT5G14440.2 47.407 270 115 6 22 267 14 280 9.59e-58 186

Find 87 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGAAATAATTGTTTAAT+TGG 0.119266 7_2:-29786910 None:intergenic
AAAAGATTTCTCAATAAATT+AGG 0.238909 7_2:+29783891 Msa1055410:CDS
CATCGAGTTGTTCTTTCATT+TGG 0.267153 7_2:-29787087 None:intergenic
TGAATTTCGGTGAACCTAAT+AGG 0.277383 7_2:-29783522 None:intergenic
GATCGATGGTCTTCAGATTC+AGG 0.289341 7_2:+29785467 Msa1055410:CDS
AGACAGAAGAGGAAGACTTC+TGG 0.333633 7_2:+29785402 Msa1055410:CDS
GCTGAAGAAGGGGATGTAAT+TGG 0.333920 7_2:+29785515 Msa1055410:CDS
ACATCCCCTTCTTCAGCTTC+CGG 0.343430 7_2:-29785509 None:intergenic
CACCTATTTGCTGCAAAACT+TGG 0.348795 7_2:-29786737 None:intergenic
CAGGAAGAAGGAATTGAAAA+TGG 0.351279 7_2:+29785215 Msa1055410:CDS
TTTCCGATTTCCTTGAATTT+CGG 0.355198 7_2:-29783535 None:intergenic
GGCGGAGACGACGGCGGCGG+TGG 0.359224 7_2:+29783453 Msa1055410:CDS
AAAGAAGGAAGCAACCTATT+AGG 0.361574 7_2:+29783508 Msa1055410:CDS
AAGAACTTATTTCTGAAGTT+AGG 0.378235 7_2:+29785357 Msa1055410:CDS
ATTATGAAACAATGCGGATT+CGG 0.382595 7_2:+29786790 Msa1055410:three_prime_UTR
CTTAGATTTCTCAGTAAAGA+AGG 0.383320 7_2:+29783426 Msa1055410:five_prime_UTR
GGAGTAAAATGGTATGTCTT+TGG 0.384255 7_2:-29783599 None:intergenic
CCCATGTTGTTAAGTCTCAT+AGG 0.388932 7_2:+29787129 Msa1055410:three_prime_UTR
TTATGAAACAATGCGGATTC+GGG 0.400899 7_2:+29786791 Msa1055410:three_prime_UTR
TTAATCAAGATCCTCTTTGC+CGG 0.403502 7_2:+29783692 Msa1055410:CDS
GGAGACGACGGCGGCGGTGG+AGG 0.405952 7_2:+29783456 Msa1055410:CDS
GACGACGGCGGCGGTGGAGG+TGG 0.413029 7_2:+29783459 Msa1055410:CDS
TTTCTCAGTAAAGAAGGTTA+TGG 0.416368 7_2:+29783432 Msa1055410:exon
GCCTCCTGCTGGAGAACGCT+GGG 0.429277 7_2:+29785427 Msa1055410:CDS
ACACTTCAGCTGAGACAGTT+AGG 0.433272 7_2:+29783353 None:intergenic
GACTTCTGGATGCCTCCTGC+TGG 0.436042 7_2:+29785416 Msa1055410:CDS
TGCCTCCTGCTGGAGAACGC+TGG 0.437280 7_2:+29785426 Msa1055410:CDS
TCACCGAAATTCAAGGAAAT+CGG 0.437920 7_2:+29783532 Msa1055410:CDS
ATAAGTCAGAGGAACATATC+TGG 0.444120 7_2:+29783853 Msa1055410:CDS
GGGTCTCATCGATTTCGCTT+TGG 0.447863 7_2:+29783642 Msa1055410:CDS
CAGCTGAGACAGTTAGGTCT+TGG 0.447963 7_2:+29783359 None:intergenic
GAATTACATTATGTTAGATC+AGG 0.456672 7_2:+29786759 Msa1055410:three_prime_UTR
AATTTCATAAACAGAGCAAC+AGG 0.461659 7_2:+29785196 Msa1055410:intron
TTCCGGTTCTGACTCTGAAT+CGG 0.470015 7_2:-29785492 None:intergenic
ATGTAAGTTGACTGGTCATA+AGG 0.472920 7_2:+29783827 Msa1055410:CDS
CGATTCAAATGCGTAGAGAC+AGG 0.475721 7_2:+29783562 Msa1055410:CDS
ACTGAATAAACTTCTAGCTC+TGG 0.475986 7_2:+29786995 Msa1055410:three_prime_UTR
ATTAGGTTCACCGAAATTCA+AGG 0.477171 7_2:+29783525 Msa1055410:CDS
CTTTCTAGAAGCAAAGCTGC+TGG 0.477926 7_2:-29786664 None:intergenic
GAGAATGTTAAGCAGAAAGA+AGG 0.478599 7_2:+29783493 Msa1055410:CDS
CTCACATAAAACTATTGAAA+AGG 0.481654 7_2:-29786859 None:intergenic
AAAAGACTGTCAATAGAAGT+TGG 0.489243 7_2:+29786639 Msa1055410:CDS
TCTTGATTAAACATATTAAG+TGG 0.493333 7_2:-29783679 None:intergenic
TTGTCCCAGCGTTCTCCAGC+AGG 0.495445 7_2:-29785431 None:intergenic
TCAGAACCGGAAGCTGAAGA+AGG 0.499166 7_2:+29785503 Msa1055410:CDS
CGACGAGACTTGATATATGT+TGG 0.503366 7_2:+29786704 Msa1055410:exon
GTCCGATTCAGAGTCAGAAC+CGG 0.505178 7_2:+29785490 Msa1055410:CDS
CATATCTGGAAGCATATGAC+TGG 0.506260 7_2:+29783867 Msa1055410:CDS
ATCGATGGTCTTCAGATTCA+GGG 0.514860 7_2:+29785468 Msa1055410:CDS
CTTTCATTTGGCATTACATG+TGG 0.516929 7_2:-29787075 None:intergenic
TATGGCGGAGACGACGGCGG+CGG 0.520239 7_2:+29783450 Msa1055410:exon
CAGAACCGGAAGCTGAAGAA+GGG 0.536386 7_2:+29785504 Msa1055410:CDS
TAAACAGAGCAACAGGAAGA+AGG 0.539912 7_2:+29785203 Msa1055410:intron
TGTAGATGGTGATGCTGATG+TGG 0.540196 7_2:+29786462 Msa1055410:intron
GGCGGTGGAGGTGGCGACGA+CGG 0.542074 7_2:+29783468 Msa1055410:CDS
CCATGTTGTTAAGTCTCATA+GGG 0.545485 7_2:+29787130 Msa1055410:three_prime_UTR
AAAGTTATGAAATTATGCAT+TGG 0.547469 7_2:+29787222 Msa1055410:three_prime_UTR
ATGAAAGAACAACTCGATGC+GGG 0.553594 7_2:+29787091 Msa1055410:three_prime_UTR
TTTCTAGAAGCAAAGCTGCT+GGG 0.559020 7_2:-29786663 None:intergenic
AAGTTGATATGTAAGTTGAC+TGG 0.567064 7_2:+29783819 Msa1055410:CDS
CCCTATGAGACTTAACAACA+TGG 0.569930 7_2:-29787130 None:intergenic
AAATTCAAGGAAATCGGAAA+CGG 0.578058 7_2:+29783538 Msa1055410:CDS
AGTTAGGAAGTCTTCTAATG+AGG 0.585084 7_2:+29785373 Msa1055410:CDS
CGAAGAAATTACCGGCAAAG+AGG 0.588104 7_2:-29783703 None:intergenic
ATTTCATGATTTCACCACAA+TGG 0.589727 7_2:+29786924 Msa1055410:three_prime_UTR
TCCCAGCGTTCTCCAGCAGG+AGG 0.591225 7_2:-29785428 None:intergenic
GAAGGTTATGGCGGAGACGA+CGG 0.593940 7_2:+29783444 Msa1055410:exon
GGTGGAGGTGGCGACGACGG+AGG 0.596342 7_2:+29783471 Msa1055410:CDS
TGAGGAAAGTGAGACAGAAG+AGG 0.603864 7_2:+29785391 Msa1055410:CDS
CTCAGTAAAGAAGGTTATGG+CGG 0.603988 7_2:+29783435 Msa1055410:exon
GAACGCTGGGACAACGATGA+CGG 0.608337 7_2:+29785440 Msa1055410:CDS
AGAGTATGAACTCACATGAG+TGG 0.623349 7_2:+29787163 Msa1055410:three_prime_UTR
CCTATGAGACTTAACAACAT+GGG 0.625548 7_2:-29787129 None:intergenic
CTATGAGACTTAACAACATG+GGG 0.641103 7_2:-29787128 None:intergenic
ATATCTGGAAGCATATGACT+GGG 0.641514 7_2:+29783868 Msa1055410:CDS
AGTCAGAAGAGTTATCCTCA+AGG 0.648284 7_2:+29786494 Msa1055410:CDS
TGATGCTGATGTGGATTGCA+AGG 0.649831 7_2:+29786471 Msa1055410:CDS
GAGCAGCAAAGTGTAGATTG+TGG 0.650739 7_2:+29785251 Msa1055410:CDS
AATGAAAGAACAACTCGATG+CGG 0.655243 7_2:+29787090 Msa1055410:three_prime_UTR
AATGAGTATTACAGCCATTG+TGG 0.661199 7_2:-29786938 None:intergenic
AGAACCGGAAGCTGAAGAAG+GGG 0.662051 7_2:+29785505 Msa1055410:CDS
TCATAAGGTTAATAAGTCAG+AGG 0.664439 7_2:+29783842 Msa1055410:CDS
ACGATGACGGAGGAGATCGA+TGG 0.666524 7_2:+29785453 Msa1055410:CDS
GGTTATGGCGGAGACGACGG+CGG 0.669171 7_2:+29783447 Msa1055410:exon
CGCTGGGACAACGATGACGG+AGG 0.680098 7_2:+29785443 Msa1055410:CDS
AGTGTATCCGAATACTCATG+TGG 0.700828 7_2:+29787186 Msa1055410:three_prime_UTR
ATATGCATTATGAAACAATG+CGG 0.745089 7_2:+29786784 Msa1055410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTGATTCAATTTT+TGG + chr7_2:29783926-29783945 Msa1055410:intron 10.0%
!! ATTATTTCAAACTAAAAATT+GGG - chr7_2:29784916-29784935 None:intergenic 10.0%
!!! TAAAAATTAGAAGTATTATT+AGG - chr7_2:29785901-29785920 None:intergenic 10.0%
!!! ATTGTGTAATTTTAAATAAT+AGG - chr7_2:29786057-29786076 None:intergenic 10.0%
!!! TATTATTTAAAATTACACAA+TGG + chr7_2:29786056-29786075 Msa1055410:intron 10.0%
!!! ATTATTTAAAATTACACAAT+GGG + chr7_2:29786057-29786076 Msa1055410:intron 10.0%
!!! ATTTTTTTTTTTTTTGTAGA+TGG + chr7_2:29786448-29786467 Msa1055410:intron 10.0%
!! AAAAGATTTCTCAATAAATT+AGG + chr7_2:29783891-29783910 Msa1055410:CDS 15.0%
!! ATCTTCTTTCATAAAAATAT+AGG - chr7_2:29784297-29784316 None:intergenic 15.0%
!!! TATTTTTATGAAAGAAGATA+AGG + chr7_2:29784298-29784317 Msa1055410:intron 15.0%
!!! TTTTTTAATCTAGTTTCATT+TGG + chr7_2:29784488-29784507 Msa1055410:intron 15.0%
!! CATTATTTCAAACTAAAAAT+TGG - chr7_2:29784917-29784936 None:intergenic 15.0%
!!! ATTTTTAGTTTGAAATAATG+TGG + chr7_2:29784917-29784936 Msa1055410:intron 15.0%
!!! TTTTTAGTTTGAAATAATGT+GGG + chr7_2:29784918-29784937 Msa1055410:intron 15.0%
!! GATTATAATTGTTATAACAA+AGG + chr7_2:29785775-29785794 Msa1055410:intron 15.0%
!!! ATTTTAAATAATAGGAGTTA+AGG - chr7_2:29786049-29786068 None:intergenic 15.0%
!! TTATTATTAATTGTCAGTTA+TGG - chr7_2:29786216-29786235 None:intergenic 15.0%
!! TCATGAAATAATTGTTTAAT+TGG - chr7_2:29786913-29786932 None:intergenic 15.0%
!! TCTTGATTAAACATATTAAG+TGG - chr7_2:29783682-29783701 None:intergenic 20.0%
!!! TTTTAGTACTTTAAGTTGTA+GGG + chr7_2:29783961-29783980 Msa1055410:intron 20.0%
!!! GACAATTTTTGTAAGTTTTT+TGG + chr7_2:29784102-29784121 Msa1055410:intron 20.0%
!! TATACACAAGCTATATTTAT+AGG - chr7_2:29784213-29784232 None:intergenic 20.0%
!!! AATTTGTCATTTTGTGAATT+TGG + chr7_2:29784837-29784856 Msa1055410:intron 20.0%
!!! TCATTTGTTAATTATTTCTG+TGG + chr7_2:29785149-29785168 Msa1055410:intron 20.0%
!! TATAAGTAGCATCTTATAAT+AGG - chr7_2:29785628-29785647 None:intergenic 20.0%
!! TCTAGTAACTATATAAAAAC+TGG - chr7_2:29786087-29786106 None:intergenic 20.0%
!!! CATATTATTTCTTTATTCCT+AGG + chr7_2:29786340-29786359 Msa1055410:intron 20.0%
!!! AACATATAGATTTGGTAATA+TGG - chr7_2:29786588-29786607 None:intergenic 20.0%
!! AAAGTTATGAAATTATGCAT+TGG + chr7_2:29787222-29787241 Msa1055410:three_prime_UTR 20.0%
!! TTTTTACTGTTGGAGTAAAA+TGG - chr7_2:29783613-29783632 None:intergenic 25.0%
!! AACAGTAAAAAATGTCGTTT+GGG + chr7_2:29783622-29783641 Msa1055410:CDS 25.0%
!! GAAAACATAAAAGTGCAAAA+AGG - chr7_2:29783732-29783751 None:intergenic 25.0%
!!! GTTTTAGTACTTTAAGTTGT+AGG + chr7_2:29783960-29783979 Msa1055410:intron 25.0%
! CTTATGTATTAACTACTGTT+TGG + chr7_2:29784007-29784026 Msa1055410:intron 25.0%
! CAAATAAGCTAAATCCAAAT+AGG + chr7_2:29784445-29784464 Msa1055410:intron 25.0%
! TCAAATATAGAAGACCTATT+TGG - chr7_2:29784462-29784481 None:intergenic 25.0%
!!! AAATTTGTTAAACACTTCCA+TGG - chr7_2:29784527-29784546 None:intergenic 25.0%
!! TGATTTTGTCAAATTACTAG+CGG - chr7_2:29784704-29784723 None:intergenic 25.0%
!!! AAGAACTTATTTCTGAAGTT+AGG + chr7_2:29785357-29785376 Msa1055410:CDS 25.0%
! AGTTTAGAGAAAATGTGTTA+TGG - chr7_2:29785552-29785571 None:intergenic 25.0%
! TGTGTCTTCTTTATAAACTT+CGG - chr7_2:29785665-29785684 None:intergenic 25.0%
! TACTAATAGTTTGATAGAAC+CGG + chr7_2:29785852-29785871 Msa1055410:intron 25.0%
! TTGTGTTTAGGAATAAAACA+GGG - chr7_2:29786188-29786207 None:intergenic 25.0%
! AAACTTTACCAAACTTAACA+TGG - chr7_2:29786305-29786324 None:intergenic 25.0%
!! ATTACTAGTTTCCAAACATT+AGG + chr7_2:29786536-29786555 Msa1055410:intron 25.0%
! TATTGATAAGTCCTAATGTT+TGG - chr7_2:29786550-29786569 None:intergenic 25.0%
!! ATTTGGTAATATGGAAAACT+AGG - chr7_2:29786579-29786598 None:intergenic 25.0%
! AGAAACTCAACATATAGATT+TGG - chr7_2:29786596-29786615 None:intergenic 25.0%
! GAATTACATTATGTTAGATC+AGG + chr7_2:29786759-29786778 Msa1055410:three_prime_UTR 25.0%
! ATATGCATTATGAAACAATG+CGG + chr7_2:29786784-29786803 Msa1055410:three_prime_UTR 25.0%
! CTCACATAAAACTATTGAAA+AGG - chr7_2:29786862-29786881 None:intergenic 25.0%
!! AATTTTACCACATGAGTATT+CGG - chr7_2:29787196-29787215 None:intergenic 25.0%
CTTAGATTTCTCAGTAAAGA+AGG + chr7_2:29783426-29783445 Msa1055410:five_prime_UTR 30.0%
TTTCTCAGTAAAGAAGGTTA+TGG + chr7_2:29783432-29783451 Msa1055410:exon 30.0%
TTTCCGATTTCCTTGAATTT+CGG - chr7_2:29783538-29783557 None:intergenic 30.0%
AAATTCAAGGAAATCGGAAA+CGG + chr7_2:29783538-29783557 Msa1055410:CDS 30.0%
!!! CAAACGACATTTTTTACTGT+TGG - chr7_2:29783623-29783642 None:intergenic 30.0%
CAACAGTAAAAAATGTCGTT+TGG + chr7_2:29783621-29783640 Msa1055410:CDS 30.0%
!! AAGTTGATATGTAAGTTGAC+TGG + chr7_2:29783819-29783838 Msa1055410:CDS 30.0%
TCATAAGGTTAATAAGTCAG+AGG + chr7_2:29783842-29783861 Msa1055410:CDS 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr7_2:29784058-29784077 Msa1055410:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + chr7_2:29784059-29784078 Msa1055410:intron 30.0%
AATAAGCAGTTTATCCAAAC+AGG + chr7_2:29784271-29784290 Msa1055410:intron 30.0%
CATAAAAATATAGGCCTGTT+TGG - chr7_2:29784288-29784307 None:intergenic 30.0%
CAAATTGTACATACGATTGA+AGG - chr7_2:29784823-29784842 None:intergenic 30.0%
TTAAATGAAATGACAAGCCT+CGG + chr7_2:29784944-29784963 Msa1055410:intron 30.0%
CATATTGAAATCTGAGTATC+CGG + chr7_2:29785075-29785094 Msa1055410:intron 30.0%
AATTTCATAAACAGAGCAAC+AGG + chr7_2:29785196-29785215 Msa1055410:intron 30.0%
GAAGTTTATAAAGAAGACAC+AGG + chr7_2:29785664-29785683 Msa1055410:intron 30.0%
! AAATTTTCACTAGTGTCCTT+CGG - chr7_2:29785801-29785820 None:intergenic 30.0%
TCAAAAAAGTAGTTTCATGC+CGG - chr7_2:29785874-29785893 None:intergenic 30.0%
!! TCAAACAGAGATTTGTTACA+AGG + chr7_2:29785925-29785944 Msa1055410:intron 30.0%
!! CAAACAGAGATTTGTTACAA+GGG + chr7_2:29785926-29785945 Msa1055410:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG + chr7_2:29785953-29785972 Msa1055410:intron 30.0%
TAGTTACTAGAGATAAGTAG+AGG + chr7_2:29786096-29786115 Msa1055410:intron 30.0%
CTTGTGTTTAGGAATAAAAC+AGG - chr7_2:29786189-29786208 None:intergenic 30.0%
TTATCTACTACTCTGATATG+AGG + chr7_2:29786259-29786278 Msa1055410:intron 30.0%
GAGATTAGCGATATATTACA+TGG + chr7_2:29786383-29786402 Msa1055410:intron 30.0%
TACAAGAAAATTAACAGAGC+AGG + chr7_2:29786421-29786440 Msa1055410:intron 30.0%
TACTGAAGTAAAATACCTTG+AGG - chr7_2:29786512-29786531 None:intergenic 30.0%
AAAAGACTGTCAATAGAAGT+TGG + chr7_2:29786639-29786658 Msa1055410:CDS 30.0%
ATTATGAAACAATGCGGATT+CGG + chr7_2:29786790-29786809 Msa1055410:three_prime_UTR 30.0%
ATTTCATGATTTCACCACAA+TGG + chr7_2:29786924-29786943 Msa1055410:three_prime_UTR 30.0%
GAGAATGTTAAGCAGAAAGA+AGG + chr7_2:29783493-29783512 Msa1055410:CDS 35.0%
AAAGAAGGAAGCAACCTATT+AGG + chr7_2:29783508-29783527 Msa1055410:CDS 35.0%
TGAATTTCGGTGAACCTAAT+AGG - chr7_2:29783525-29783544 None:intergenic 35.0%
ATTAGGTTCACCGAAATTCA+AGG + chr7_2:29783525-29783544 Msa1055410:CDS 35.0%
TCACCGAAATTCAAGGAAAT+CGG + chr7_2:29783532-29783551 Msa1055410:CDS 35.0%
GGAGTAAAATGGTATGTCTT+TGG - chr7_2:29783602-29783621 None:intergenic 35.0%
TTAATCAAGATCCTCTTTGC+CGG + chr7_2:29783692-29783711 Msa1055410:CDS 35.0%
AAAGGAAGCGAAGAAATTAC+CGG - chr7_2:29783714-29783733 None:intergenic 35.0%
! ATGTAAGTTGACTGGTCATA+AGG + chr7_2:29783827-29783846 Msa1055410:CDS 35.0%
ATAAGTCAGAGGAACATATC+TGG + chr7_2:29783853-29783872 Msa1055410:CDS 35.0%
! ATATCTGGAAGCATATGACT+GGG + chr7_2:29783868-29783887 Msa1055410:CDS 35.0%
ATAAGCTCTCCAATTTAGCT+TGG + chr7_2:29784135-29784154 Msa1055410:intron 35.0%
!!! GCTGTTTTTCCAAGCTAAAT+TGG - chr7_2:29784147-29784166 None:intergenic 35.0%
! TTGGATGCTTTAGATATCCA+TGG + chr7_2:29784507-29784526 Msa1055410:intron 35.0%
TATATGTGTCTGTGTCGTAT+CGG + chr7_2:29784747-29784766 Msa1055410:intron 35.0%
! AATTGGGCCAATCGTAATTT+TGG - chr7_2:29784900-29784919 None:intergenic 35.0%
CAGGAAGAAGGAATTGAAAA+TGG + chr7_2:29785215-29785234 Msa1055410:CDS 35.0%
AGTTAGGAAGTCTTCTAATG+AGG + chr7_2:29785373-29785392 Msa1055410:CDS 35.0%
AGAAGACACAGGATGAAAAT+AGG + chr7_2:29785675-29785694 Msa1055410:intron 35.0%
GCATCTAGCTGTTTATGTTT+CGG - chr7_2:29785728-29785747 None:intergenic 35.0%
ATTGTTATAACAAAGGCCGA+AGG + chr7_2:29785782-29785801 Msa1055410:intron 35.0%
!! GATTTGTTACAAGGGAGAAA+AGG + chr7_2:29785934-29785953 Msa1055410:intron 35.0%
ATAATAGGAGTTAAGGACAG+AGG - chr7_2:29786042-29786061 None:intergenic 35.0%
GAATAAAACAGGGAAAGACA+AGG - chr7_2:29786178-29786197 None:intergenic 35.0%
ACAACGAACCATGTTAAGTT+TGG + chr7_2:29786294-29786313 Msa1055410:intron 35.0%
! TTTTTGTTCTGCTGGGTATA+AGG - chr7_2:29786623-29786642 None:intergenic 35.0%
TTATGAAACAATGCGGATTC+GGG + chr7_2:29786791-29786810 Msa1055410:three_prime_UTR 35.0%
AATGAGTATTACAGCCATTG+TGG - chr7_2:29786941-29786960 None:intergenic 35.0%
!! ACTGAATAAACTTCTAGCTC+TGG + chr7_2:29786995-29787014 Msa1055410:three_prime_UTR 35.0%
! AGCTTTTGTTCTGTTGTGAT+TGG + chr7_2:29787028-29787047 Msa1055410:three_prime_UTR 35.0%
CTTTCATTTGGCATTACATG+TGG - chr7_2:29787078-29787097 None:intergenic 35.0%
! CATCGAGTTGTTCTTTCATT+TGG - chr7_2:29787090-29787109 None:intergenic 35.0%
AATGAAAGAACAACTCGATG+CGG + chr7_2:29787090-29787109 Msa1055410:three_prime_UTR 35.0%
CTATGAGACTTAACAACATG+GGG - chr7_2:29787131-29787150 None:intergenic 35.0%
CCTATGAGACTTAACAACAT+GGG - chr7_2:29787132-29787151 None:intergenic 35.0%
CCATGTTGTTAAGTCTCATA+GGG + chr7_2:29787130-29787149 Msa1055410:three_prime_UTR 35.0%
CTCAGTAAAGAAGGTTATGG+CGG + chr7_2:29783435-29783454 Msa1055410:exon 40.0%
! ACCAATAACCAACTTGTTCG+CGG - chr7_2:29783779-29783798 None:intergenic 40.0%
! CATATCTGGAAGCATATGAC+TGG + chr7_2:29783867-29783886 Msa1055410:CDS 40.0%
TTGTAGGGATTAGAGCAATG+TGG + chr7_2:29783976-29783995 Msa1055410:intron 40.0%
TGGAGGACCAAAATTACGAT+TGG + chr7_2:29784890-29784909 Msa1055410:intron 40.0%
TCTCTATCGTCTATGAAGAC+CGG - chr7_2:29785097-29785116 None:intergenic 40.0%
TAAACAGAGCAACAGGAAGA+AGG + chr7_2:29785203-29785222 Msa1055410:intron 40.0%
ATCGATGGTCTTCAGATTCA+GGG + chr7_2:29785468-29785487 Msa1055410:CDS 40.0%
TGTAACTGCTAGTAACCACT+AGG + chr7_2:29785981-29786000 Msa1055410:intron 40.0%
ATAGGCTCTCAAATTCCTAG+TGG - chr7_2:29785999-29786018 None:intergenic 40.0%
CAGAATTGTGACAAAGACCT+AGG - chr7_2:29786360-29786379 None:intergenic 40.0%
AGGTCTTTGTCACAATTCTG+AGG + chr7_2:29786360-29786379 Msa1055410:intron 40.0%
GGTCTTTGTCACAATTCTGA+GGG + chr7_2:29786361-29786380 Msa1055410:intron 40.0%
AGTCAGAAGAGTTATCCTCA+AGG + chr7_2:29786494-29786513 Msa1055410:CDS 40.0%
! GACAGTCTTTTTGTTCTGCT+GGG - chr7_2:29786630-29786649 None:intergenic 40.0%
! TGACAGTCTTTTTGTTCTGC+TGG - chr7_2:29786631-29786650 None:intergenic 40.0%
! TTTCTAGAAGCAAAGCTGCT+GGG - chr7_2:29786666-29786685 None:intergenic 40.0%
CGACGAGACTTGATATATGT+TGG + chr7_2:29786704-29786723 Msa1055410:exon 40.0%
! AGCCAAGTTTTGCAGCAAAT+AGG + chr7_2:29786735-29786754 Msa1055410:three_prime_UTR 40.0%
! CACCTATTTGCTGCAAAACT+TGG - chr7_2:29786740-29786759 None:intergenic 40.0%
ATGAAAGAACAACTCGATGC+GGG + chr7_2:29787091-29787110 Msa1055410:three_prime_UTR 40.0%
CCCATGTTGTTAAGTCTCAT+AGG + chr7_2:29787129-29787148 Msa1055410:three_prime_UTR 40.0%
CCCTATGAGACTTAACAACA+TGG - chr7_2:29787133-29787152 None:intergenic 40.0%
AGAGTATGAACTCACATGAG+TGG + chr7_2:29787163-29787182 Msa1055410:three_prime_UTR 40.0%
AGTGTATCCGAATACTCATG+TGG + chr7_2:29787186-29787205 Msa1055410:three_prime_UTR 40.0%
CGATTCAAATGCGTAGAGAC+AGG + chr7_2:29783562-29783581 Msa1055410:CDS 45.0%
CGAAGAAATTACCGGCAAAG+AGG - chr7_2:29783706-29783725 None:intergenic 45.0%
!! ACCGCGAACAAGTTGGTTAT+TGG + chr7_2:29783775-29783794 Msa1055410:intron 45.0%
GACTGAAAACCTACGAAGCA+CGG + chr7_2:29784631-29784650 Msa1055410:intron 45.0%
AAACCTACGAAGCACGGATA+CGG + chr7_2:29784637-29784656 Msa1055410:intron 45.0%
AGGTTGTCAGCTATGAAGCA+CGG - chr7_2:29784803-29784822 None:intergenic 45.0%
ATTGTCCATCCGTTACCATC+TGG + chr7_2:29784870-29784889 Msa1055410:intron 45.0%
TTTGGTCCTCCAGATGGTAA+CGG - chr7_2:29784882-29784901 None:intergenic 45.0%
!! CGTAATTTTGGTCCTCCAGA+TGG - chr7_2:29784888-29784907 None:intergenic 45.0%
GGTTTCCCTACAGTTCTCTT+CGG + chr7_2:29784965-29784984 Msa1055410:intron 45.0%
TCTCTGCAATCATGCAGTTG+TGG - chr7_2:29785121-29785140 None:intergenic 45.0%
GAGCAGCAAAGTGTAGATTG+TGG + chr7_2:29785251-29785270 Msa1055410:CDS 45.0%
TGAGGAAAGTGAGACAGAAG+AGG + chr7_2:29785391-29785410 Msa1055410:CDS 45.0%
AGACAGAAGAGGAAGACTTC+TGG + chr7_2:29785402-29785421 Msa1055410:CDS 45.0%
GATCGATGGTCTTCAGATTC+AGG + chr7_2:29785467-29785486 Msa1055410:CDS 45.0%
! TTCCGGTTCTGACTCTGAAT+CGG - chr7_2:29785495-29785514 None:intergenic 45.0%
GCTGAAGAAGGGGATGTAAT+TGG + chr7_2:29785515-29785534 Msa1055410:CDS 45.0%
TCCGAGAAATTCGAGTGTCT+TGG + chr7_2:29786147-29786166 Msa1055410:intron 45.0%
GCCAAGACACTCGAATTTCT+CGG - chr7_2:29786151-29786170 None:intergenic 45.0%
AAACAGGGAAAGACAAGGAG+AGG - chr7_2:29786173-29786192 None:intergenic 45.0%
GTTATGGTGCGCTTGTGTTT+AGG - chr7_2:29786200-29786219 None:intergenic 45.0%
! TGTAGATGGTGATGCTGATG+TGG + chr7_2:29786462-29786481 Msa1055410:intron 45.0%
! TGATGCTGATGTGGATTGCA+AGG + chr7_2:29786471-29786490 Msa1055410:CDS 45.0%
! CTTTCTAGAAGCAAAGCTGC+TGG - chr7_2:29786667-29786686 None:intergenic 45.0%
! GCACTCTTTTCGACGAATAC+AGG - chr7_2:29787056-29787075 None:intergenic 45.0%
!! GGGTCTCATCGATTTCGCTT+TGG + chr7_2:29783642-29783661 Msa1055410:CDS 50.0%
! TAACCAACTTGTTCGCGGTG+CGG - chr7_2:29783774-29783793 None:intergenic 50.0%
ACGGATACGGACACAAACAC+TGG + chr7_2:29784650-29784669 Msa1055410:intron 50.0%
ACGGACACAAACACTGGACA+CGG + chr7_2:29784656-29784675 Msa1055410:intron 50.0%
! TGTCTGTGTCGTATCGGTGT+GGG + chr7_2:29784753-29784772 Msa1055410:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_2:29784792-29784811 None:intergenic 50.0%
AGAGAACTGTAGGGAAACCG+AGG - chr7_2:29784964-29784983 None:intergenic 50.0%
TCCCTACAGTTCTCTTCGGT+TGG + chr7_2:29784969-29784988 Msa1055410:intron 50.0%
CCCAACCGAAGAGAACTGTA+GGG - chr7_2:29784973-29784992 None:intergenic 50.0%
CCCTACAGTTCTCTTCGGTT+GGG + chr7_2:29784970-29784989 Msa1055410:intron 50.0%
AACACCAGCTCACACAGTCA+AGG + chr7_2:29784996-29785015 Msa1055410:intron 50.0%
ACACCAGCTCACACAGTCAA+GGG + chr7_2:29784997-29785016 Msa1055410:intron 50.0%
AGTCAAGGGATCTCGACTGT+TGG + chr7_2:29785011-29785030 Msa1055410:intron 50.0%
GTCCGATTCAGAGTCAGAAC+CGG + chr7_2:29785490-29785509 Msa1055410:CDS 50.0%
TCAGAACCGGAAGCTGAAGA+AGG + chr7_2:29785503-29785522 Msa1055410:CDS 50.0%
CAGAACCGGAAGCTGAAGAA+GGG + chr7_2:29785504-29785523 Msa1055410:CDS 50.0%
AGAACCGGAAGCTGAAGAAG+GGG + chr7_2:29785505-29785524 Msa1055410:CDS 50.0%
ACATCCCCTTCTTCAGCTTC+CGG - chr7_2:29785512-29785531 None:intergenic 50.0%
TAAGGACAGAGGCAGGGATT+GGG - chr7_2:29786031-29786050 None:intergenic 50.0%
TTAAGGACAGAGGCAGGGAT+TGG - chr7_2:29786032-29786051 None:intergenic 50.0%
AGGAGTTAAGGACAGAGGCA+GGG - chr7_2:29786037-29786056 None:intergenic 50.0%
TAGGAGTTAAGGACAGAGGC+AGG - chr7_2:29786038-29786057 None:intergenic 50.0%
! GAAGGTTATGGCGGAGACGA+CGG + chr7_2:29783444-29783463 Msa1055410:exon 55.0%
! AACTTGTTCGCGGTGCGGTT+TGG - chr7_2:29783769-29783788 None:intergenic 55.0%
AAACCGCACCGCGAACAAGT+TGG + chr7_2:29783768-29783787 Msa1055410:intron 55.0%
TGTCCGTATCCGTGCTTCGT+AGG - chr7_2:29784643-29784662 None:intergenic 55.0%
CACAAACACTGGACACGGCA+CGG + chr7_2:29784661-29784680 Msa1055410:intron 55.0%
! GTGTCTGTGTCGTATCGGTG+TGG + chr7_2:29784752-29784771 Msa1055410:intron 55.0%
! TCGTATCGGTGTGGGATACG+CGG + chr7_2:29784761-29784780 Msa1055410:intron 55.0%
GTCCATCCGTTACCATCTGG+AGG + chr7_2:29784873-29784892 Msa1055410:intron 55.0%
!! GTCCTCCAGATGGTAACGGA+TGG - chr7_2:29784878-29784897 None:intergenic 55.0%
GCCCAACCGAAGAGAACTGT+AGG - chr7_2:29784974-29784993 None:intergenic 55.0%
GATCCCTTGACTGTGTGAGC+TGG - chr7_2:29785003-29785022 None:intergenic 55.0%
GAACGCTGGGACAACGATGA+CGG + chr7_2:29785440-29785459 Msa1055410:CDS 55.0%
!! ACGATGACGGAGGAGATCGA+TGG + chr7_2:29785453-29785472 Msa1055410:CDS 55.0%
!! GGGATTGGGTTGGGAGAGAT+AGG - chr7_2:29786017-29786036 None:intergenic 55.0%
ACAGAGGCAGGGATTGGGTT+GGG - chr7_2:29786026-29786045 None:intergenic 55.0%
! GTTCGCGGTGCGGTTTGGAT+CGG - chr7_2:29783764-29783783 None:intergenic 60.0%
TGGGATACGCGGCAAATCCG+AGG + chr7_2:29784772-29784791 Msa1055410:intron 60.0%
GACTTCTGGATGCCTCCTGC+TGG + chr7_2:29785416-29785435 Msa1055410:CDS 60.0%
TTGTCCCAGCGTTCTCCAGC+AGG - chr7_2:29785434-29785453 None:intergenic 60.0%
GACAGAGGCAGGGATTGGGT+TGG - chr7_2:29786027-29786046 None:intergenic 60.0%
! GGTTATGGCGGAGACGACGG+CGG + chr7_2:29783447-29783466 Msa1055410:exon 65.0%
TGCCTCCTGCTGGAGAACGC+TGG + chr7_2:29785426-29785445 Msa1055410:CDS 65.0%
GCCTCCTGCTGGAGAACGCT+GGG + chr7_2:29785427-29785446 Msa1055410:CDS 65.0%
TCCCAGCGTTCTCCAGCAGG+AGG - chr7_2:29785431-29785450 None:intergenic 65.0%
! CGCTGGGACAACGATGACGG+AGG + chr7_2:29785443-29785462 Msa1055410:CDS 65.0%
! TATGGCGGAGACGACGGCGG+CGG + chr7_2:29783450-29783469 Msa1055410:exon 70.0%
GGCGGTGGAGGTGGCGACGA+CGG + chr7_2:29783468-29783487 Msa1055410:CDS 75.0%
GGTGGAGGTGGCGACGACGG+AGG + chr7_2:29783471-29783490 Msa1055410:CDS 75.0%
! GGAGACGACGGCGGCGGTGG+AGG + chr7_2:29783456-29783475 Msa1055410:CDS 80.0%
! GACGACGGCGGCGGTGGAGG+TGG + chr7_2:29783459-29783478 Msa1055410:CDS 80.0%
! GGCGGAGACGACGGCGGCGG+TGG + chr7_2:29783453-29783472 Msa1055410:CDS 85.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 29783364 29787247 29783364 ID=Msa1055410;Name=Msa1055410
chr7_2 mRNA 29783364 29787247 29783364 ID=Msa1055410-mRNA-1;Parent=Msa1055410;Name=Msa1055410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=87|1|0.8|1|1|1|5|531|273
chr7_2 exon 29783364 29783713 29783364 ID=Msa1055410-mRNA-1:exon:6093;Parent=Msa1055410-mRNA-1
chr7_2 exon 29783815 29783912 29783815 ID=Msa1055410-mRNA-1:exon:6094;Parent=Msa1055410-mRNA-1
chr7_2 exon 29785210 29785536 29785210 ID=Msa1055410-mRNA-1:exon:6095;Parent=Msa1055410-mRNA-1
chr7_2 exon 29786467 29786515 29786467 ID=Msa1055410-mRNA-1:exon:6096;Parent=Msa1055410-mRNA-1
chr7_2 exon 29786632 29787247 29786632 ID=Msa1055410-mRNA-1:exon:6097;Parent=Msa1055410-mRNA-1
chr7_2 five_prime_UTR 29783364 29783450 29783364 ID=Msa1055410-mRNA-1:five_prime_utr;Parent=Msa1055410-mRNA-1
chr7_2 CDS 29783451 29783713 29783451 ID=Msa1055410-mRNA-1:cds;Parent=Msa1055410-mRNA-1
chr7_2 CDS 29783815 29783912 29783815 ID=Msa1055410-mRNA-1:cds;Parent=Msa1055410-mRNA-1
chr7_2 CDS 29785210 29785536 29785210 ID=Msa1055410-mRNA-1:cds;Parent=Msa1055410-mRNA-1
chr7_2 CDS 29786467 29786515 29786467 ID=Msa1055410-mRNA-1:cds;Parent=Msa1055410-mRNA-1
chr7_2 CDS 29786632 29786716 29786632 ID=Msa1055410-mRNA-1:cds;Parent=Msa1055410-mRNA-1
chr7_2 three_prime_UTR 29786717 29787247 29786717 ID=Msa1055410-mRNA-1:three_prime_utr;Parent=Msa1055410-mRNA-1
Gene Sequence

>Msa1055410

ATGGCGGAGACGACGGCGGCGGTGGAGGTGGCGACGACGGAGGAGAATGTTAAGCAGAAAGAAGGAAGCAACCTATTAGGTTCACCGAAATTCAAGGAAATCGGAAACGGTCGATTCAAATGCGTAGAGACAGGTCACGAAGTACTCTCCAAAGACATACCATTTTACTCCAACAGTAAAAAATGTCGTTTGGGTCTCATCGATTTCGCTTTGGCTAATAATAAATCTCCACTTAATATGTTTAATCAAGATCCTCTTTGCCGTTCGAAGTTGATATGTAAGTTGACTGGTCATAAGGTTAATAAGTCAGAGGAACATATCTGGAAGCATATGACTGGGAAAAGATTTCTCAATAAATTAGAGCAACAGGAAGAAGGAATTGAAAATGGCGAGAGCTTGCAAGAGCAGCAAAGTGTAGATTGTGGAACGAAAGCTGAAATGAAGAAGAAGAATAAGCAAAAGAACAAGAAGAAAAAGAAGACAAAGAAGAAGAAAGATAAGAGAGTTGAAGAACTTATTTCTGAAGTTAGGAAGTCTTCTAATGAGGAAAGTGAGACAGAAGAGGAAGACTTCTGGATGCCTCCTGCTGGAGAACGCTGGGACAACGATGACGGAGGAGATCGATGGTCTTCAGATTCAGGGTCCGATTCAGAGTCAGAACCGGAAGCTGAAGAAGGGGATGTAATTGATGGTGATGCTGATGTGGATTGCAAGGAGTCAGAAGAGTTATCCTCAAGCAGAACAAAAAGACTGTCAATAGAAGTTGGACCCAGCAGCTTTGCTTCTAGAAAGAAGAAAAGTAAGAAGAACGACGAGACTTGA

Protein sequence

>Msa1055410

MAETTAAVEVATTEENVKQKEGSNLLGSPKFKEIGNGRFKCVETGHEVLSKDIPFYSNSKKCRLGLIDFALANNKSPLNMFNQDPLCRSKLICKLTGHKVNKSEEHIWKHMTGKRFLNKLEQQEEGIENGESLQEQQSVDCGTKAEMKKKNKQKNKKKKKTKKKKDKRVEELISEVRKSSNEESETEEEDFWMPPAGERWDNDDGGDRWSSDSGSDSESEPEAEEGDVIDGDADVDCKESEELSSSRTKRLSIEVGPSSFASRKKKSKKNDET*