AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226470 MtrunA17_Chr2g0332911 91.111 270 7 1 1 253 64 333 3.48e-174 483
Msa0226470 MtrunA17_Chr4g0040641 54.545 220 49 5 52 252 1 188 1.22e-51 166
Msa0226470 MtrunA17_Chr4g0040651 93.617 47 3 0 1 47 64 110 7.27e-27 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226470 AT1G23280.1 55.556 162 40 1 1 162 64 193 1.42e-51 170

Find 91 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTCAATCCTACTTTGTT+TGG 0.214228 2_1:-76938111 Msa0226470:three_prime_UTR
GAAGATGACATGGAAGATTT+TGG 0.235599 2_1:-76939942 Msa0226470:intron
AAAATTGTAAAGGGCTAATT+AGG 0.238259 2_1:-76943952 None:intergenic
AATCCGCATCTGGGTCATTT+TGG 0.284801 2_1:+76942158 None:intergenic
ATCTCAATCCTACTTTGTTT+GGG 0.295308 2_1:-76938110 Msa0226470:three_prime_UTR
CAAATTCCAGTGACATTGTA+AGG 0.318003 2_1:+76942963 None:intergenic
GCAAATTGAGATGGAGATAG+TGG 0.342543 2_1:-76940238 Msa0226470:CDS
TTCTGCATTAACAGATGTAT+TGG 0.350434 2_1:-76942218 Msa0226470:intron
TATGTGGATCATCAGGATTT+TGG 0.355454 2_1:-76938062 Msa0226470:three_prime_UTR
TCCTCATACGAATCCGCATC+TGG 0.358008 2_1:+76942148 None:intergenic
CTGGTTGCGAACCTACATTT+TGG 0.361173 2_1:+76940208 None:intergenic
TCTCTCTTTGTCTCTTTCCT+TGG 0.372921 2_1:+76940570 None:intergenic
ATCTTGTGTACGAGAAGCTT+TGG 0.393893 2_1:+76942195 None:intergenic
GAAGTTGCTATACGAGAAAC+TGG 0.403284 2_1:-76938282 Msa0226470:three_prime_UTR
GCAGAAGTAGAATATGTAGA+AGG 0.404197 2_1:-76939981 Msa0226470:CDS
GAATGACAATGTAGCTTTGT+TGG 0.407111 2_1:-76938150 Msa0226470:three_prime_UTR
GTACTATAAAGTTCTTGATA+TGG 0.407319 2_1:-76940157 Msa0226470:CDS
CAGCATAAACTCCTTCTTCA+AGG 0.415044 2_1:+76940390 None:intergenic
ACTCTTTCCCACAAATCCTT+TGG 0.416287 2_1:+76942374 None:intergenic
TGTCACACCTACACGGTTGC+CGG 0.423599 2_1:-76943848 Msa0226470:five_prime_UTR
GTAAAATAAATTGACATAAA+CGG 0.432572 2_1:+76938185 None:intergenic
TAGCTAAAGGGCAAGAGCTT+CGG 0.455266 2_1:+76942937 None:intergenic
CTCATACGCCAAAGGATTTG+TGG 0.458884 2_1:-76942382 Msa0226470:CDS
TCTTCATCCTCTTCATCAGC+AGG 0.463201 2_1:+76940123 None:intergenic
TTTCAATAGTCTTCATGTAA+AGG 0.467452 2_1:+76942408 None:intergenic
ATTGTCCGTTGGTTACTGAT+AGG 0.468981 2_1:-76938310 Msa0226470:three_prime_UTR
TGCTTACGAAAGACAAAGAT+TGG 0.476293 2_1:-76938345 Msa0226470:CDS
AGCTTCAAAGAAACTTGAAA+AGG 0.479994 2_1:-76938980 Msa0226470:CDS
AAAGTAGGATTGAGATGCTC+TGG 0.480020 2_1:+76938117 None:intergenic
TACCTGTGGAAGCCGTTCTC+CGG 0.491562 2_1:+76943829 None:intergenic
AGGAATTACGAACAGGCACT+TGG 0.500734 2_1:-76942341 Msa0226470:CDS
CCCAGATGCGGATTCGTATG+AGG 0.505873 2_1:-76942149 Msa0226470:CDS
CTAACTAAACGCCTTGAAGA+AGG 0.509150 2_1:-76940401 Msa0226470:CDS
TGGAGTCATCGACAAACATC+TGG 0.509833 2_1:-76942321 Msa0226470:intron
GGAAACTTGCTTTGAAAACA+AGG 0.511440 2_1:-76942128 Msa0226470:intron
TTTCTTTGATTTAGTATCAA+GGG 0.513045 2_1:+76938954 None:intergenic
CATAGCGACTATTAGCTAAA+GGG 0.516684 2_1:+76942925 None:intergenic
GCATAGCGACTATTAGCTAA+AGG 0.516741 2_1:+76942924 None:intergenic
AGTGGAGATTCAGACTGATA+AGG 0.526528 2_1:-76940345 Msa0226470:intron
AGTGCCTGTTCGTAATTCCT+AGG 0.526835 2_1:+76942344 None:intergenic
AAGAGAAGTGCGTACTGAAG+TGG 0.528805 2_1:-76940363 Msa0226470:CDS
TCATACGCCAAAGGATTTGT+GGG 0.528939 2_1:-76942381 Msa0226470:CDS
TGCCGGAGAACGGCTTCCAC+AGG 0.529700 2_1:-76943831 Msa0226470:intron
GCTTCAACCTGCTGATGAAG+AGG 0.533182 2_1:-76940130 Msa0226470:CDS
ACTTTATAGTACGCTTCAGT+AGG 0.533622 2_1:+76940168 None:intergenic
ACAGTAGTTACATTGTCCGT+TGG 0.539388 2_1:-76938321 Msa0226470:exon
TGTGTTTGTAGAATTACGAC+GGG 0.540698 2_1:-76943002 Msa0226470:intron
ACCTTTGTCTTCACGAATGG+TGG 0.540955 2_1:+76942902 None:intergenic
AGAAACCCTTACAATGTCAC+TGG 0.541886 2_1:-76942969 Msa0226470:five_prime_UTR
CAAAATGTAGGTTCGCAACC+AGG 0.546579 2_1:-76940207 Msa0226470:CDS
GGGAAAGAGTTAAGCTGCCT+AGG 0.548712 2_1:-76942361 Msa0226470:CDS
GCTGCCTAGGAATTACGAAC+AGG 0.552927 2_1:-76942348 Msa0226470:CDS
CCTCATACGAATCCGCATCT+GGG 0.557645 2_1:+76942149 None:intergenic
TGCTGATGAAGAGGATGAAG+AGG 0.563447 2_1:-76940121 Msa0226470:intron
AGAATCTAGAAGAGAAGCAA+AGG 0.564109 2_1:-76940550 Msa0226470:CDS
TCACGATCCCCAAACAAAGT+AGG 0.565053 2_1:+76938102 None:intergenic
CCGTTCTCCGGCAACCGTGT+AGG 0.568987 2_1:+76943841 None:intergenic
AGTACCTTTGTCTTCACGAA+TGG 0.571730 2_1:+76942899 None:intergenic
GTAATCAGAGGAAAGCCAAA+AGG 0.573419 2_1:-76939014 Msa0226470:CDS
CCTACACGGTTGCCGGAGAA+CGG 0.574017 2_1:-76943841 Msa0226470:five_prime_UTR
AGAAGGTTATGAACTTGAAG+AGG 0.575452 2_1:-76939964 Msa0226470:CDS
TATTACTTAGCAAATTGAGA+TGG 0.578126 2_1:-76940247 Msa0226470:intron
GTGGGACGCCTCCAAAATGT+AGG 0.582304 2_1:-76940219 Msa0226470:CDS
ATTGTCATTCTTCCAAACAA+AGG 0.584351 2_1:+76938163 None:intergenic
AAATTCCAGTGACATTGTAA+GGG 0.584410 2_1:+76942964 None:intergenic
CTTCAAATTAGTTTGTACCC+TGG 0.586065 2_1:-76938243 Msa0226470:three_prime_UTR
TCTCAATCCTACTTTGTTTG+GGG 0.587567 2_1:-76938109 Msa0226470:three_prime_UTR
GAAAACGAAGGTCCTCATTG+AGG 0.590120 2_1:-76938935 Msa0226470:intron
TTAAACGAAAACCTCGCACT+AGG 0.592591 2_1:+76943904 None:intergenic
ACTTGAAGAGGAAGATGACA+TGG 0.603621 2_1:-76939952 Msa0226470:CDS
CAAATTGAGATGGAGATAGT+GGG 0.613797 2_1:-76940237 Msa0226470:CDS
CGTTGGTTACTGATAGGAGA+GGG 0.617730 2_1:-76938304 Msa0226470:three_prime_UTR
TTGTGTTTGTAGAATTACGA+CGG 0.619078 2_1:-76943003 Msa0226470:intron
GGATAGTTGAATATTTCACC+TGG 0.619836 2_1:+76940189 None:intergenic
AACAAATAATAACACTACCA+AGG 0.623666 2_1:-76940587 Msa0226470:CDS
AAACTGAAGCACGTAATCAG+AGG 0.629054 2_1:-76939026 Msa0226470:CDS
TGAAAGAGCTCATACGCCAA+AGG 0.633610 2_1:-76942390 Msa0226470:CDS
AGAAGCAAAGGCTCAAACAG+CGG 0.638277 2_1:-76940538 Msa0226470:CDS
AGTATTAAATTACCTCAATG+AGG 0.639733 2_1:+76938923 None:intergenic
TCGCCGCTGTCACACCTACA+CGG 0.641398 2_1:-76943855 Msa0226470:five_prime_UTR
AACAGCGGCTGCTATAGAGA+AGG 0.646322 2_1:-76940523 Msa0226470:intron
CGACTTCGTGACCTAGTGCG+AGG 0.649087 2_1:-76943915 Msa0226470:five_prime_UTR
TGACCAAAATGACCCAGATG+CGG 0.657520 2_1:-76942161 Msa0226470:CDS
ATGATGCATAGCTCACCGCT+AGG 0.658867 2_1:+76938000 None:intergenic
CCGTTGGTTACTGATAGGAG+AGG 0.659798 2_1:-76938305 Msa0226470:three_prime_UTR
GCCACCATTCGTGAAGACAA+AGG 0.662439 2_1:-76942903 Msa0226470:intron
CCTCTCCTATCAGTAACCAA+CGG 0.681859 2_1:+76938305 None:intergenic
TACTAAATCAAAGAAAACGA+AGG 0.700083 2_1:-76938947 Msa0226470:CDS
GTGTAGGTGTGACAGCGGCG+AGG 0.715171 2_1:+76943857 None:intergenic
CAACCGTGTAGGTGTGACAG+CGG 0.719630 2_1:+76943852 None:intergenic
GTGTTTGTAGAATTACGACG+GGG 0.799804 2_1:-76943001 Msa0226470:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAAATAAAAATATAAAAA+AGG + chr2_1:76939951-76939970 None:intergenic 10.0%
!!! CTATATGAAAATATTTTATA+CGG - chr2_1:76940019-76940038 Msa0226470:intron 10.0%
!!! TATATGAAAATATTTTATAC+GGG - chr2_1:76940020-76940039 Msa0226470:intron 10.0%
!!! CAAATGTTATTTAAAATATT+GGG + chr2_1:76940379-76940398 None:intergenic 10.0%
!!! ACAAATGTTATTTAAAATAT+TGG + chr2_1:76940380-76940399 None:intergenic 10.0%
!!! ATTAAAAAAGTTGTATATTT+TGG + chr2_1:76940437-76940456 None:intergenic 10.0%
!! ATGAAATTTAATTAAAATAC+TGG + chr2_1:76941033-76941052 None:intergenic 10.0%
!!! ATTTATTTAAAATCAGTAAT+AGG + chr2_1:76943197-76943216 None:intergenic 10.0%
!!! AATTATTCTAATTTGAAACA+GGG + chr2_1:76938316-76938335 None:intergenic 15.0%
!!! AAATTATTCTAATTTGAAAC+AGG + chr2_1:76938317-76938336 None:intergenic 15.0%
!! TATTGTATTTAAATAGTGTA+AGG + chr2_1:76938382-76938401 None:intergenic 15.0%
!! TTATTGTATTTACATAGTTT+AGG - chr2_1:76938801-76938820 Msa0226470:intron 15.0%
!! TATTGTATTTACATAGTTTA+GGG - chr2_1:76938802-76938821 Msa0226470:intron 15.0%
!! TTTAAATTATTAGTGAAAAC+AGG + chr2_1:76939971-76939990 None:intergenic 15.0%
!!! TATTTTCATATAGGAAAAAA+AGG + chr2_1:76940012-76940031 None:intergenic 15.0%
!!! CGTATAAAATATTTTCATAT+AGG + chr2_1:76940021-76940040 None:intergenic 15.0%
!!! TTGATTTTTGTTATCATTTT+TGG - chr2_1:76940186-76940205 Msa0226470:CDS 15.0%
!!! TTTTAAATAACATTTGTACT+AGG - chr2_1:76940383-76940402 Msa0226470:CDS 15.0%
!! AAAAAAAATCAATCAGATAT+AGG + chr2_1:76940535-76940554 None:intergenic 15.0%
!!! AATATTTTTTAAGAGTGTTT+GGG + chr2_1:76940791-76940810 None:intergenic 15.0%
!!! TAATATTTTTTAAGAGTGTT+TGG + chr2_1:76940792-76940811 None:intergenic 15.0%
!! AGAAAGAAAAAAAAAAGAAA+AGG + chr2_1:76940918-76940937 None:intergenic 15.0%
!! AATCATATACAGATATATTT+GGG + chr2_1:76941156-76941175 None:intergenic 15.0%
!! AAATCATATACAGATATATT+TGG + chr2_1:76941157-76941176 None:intergenic 15.0%
!!! GTACTTTTATAATAGTATTA+GGG + chr2_1:76941182-76941201 None:intergenic 15.0%
!!! TGTACTTTTATAATAGTATT+AGG + chr2_1:76941183-76941202 None:intergenic 15.0%
!! AACATATAATTTAATATGCA+TGG + chr2_1:76941439-76941458 None:intergenic 15.0%
!! TTATGATATCAATAATTGTA+GGG + chr2_1:76942172-76942191 None:intergenic 15.0%
!! GTAAAATAAATTGACATAAA+CGG + chr2_1:76943733-76943752 None:intergenic 15.0%
!!! TGAATGATTTTATATACCTT+AGG - chr2_1:76938772-76938791 Msa0226470:intron 20.0%
!! AATACAATAAGTAATTCCTA+AGG + chr2_1:76938791-76938810 None:intergenic 20.0%
!! AAAAAAATGGAAAAGAAAAG+AGG + chr2_1:76938894-76938913 None:intergenic 20.0%
!! ATTCTACAAACACAAAAAAA+TGG + chr2_1:76938907-76938926 None:intergenic 20.0%
!! AGTAATCAAAATTTGAACTT+GGG + chr2_1:76939202-76939221 None:intergenic 20.0%
!! AAGTAATCAAAATTTGAACT+TGG + chr2_1:76939203-76939222 None:intergenic 20.0%
!! ATCAAAATTAATATCCAACA+GGG + chr2_1:76939332-76939351 None:intergenic 20.0%
!! TATCAAAATTAATATCCAAC+AGG + chr2_1:76939333-76939352 None:intergenic 20.0%
!! AAATTAAATAATATGCAGCT+TGG + chr2_1:76939887-76939906 None:intergenic 20.0%
!!! ATTATTTAATTTCTGCATGT+TGG - chr2_1:76939895-76939914 Msa0226470:intron 20.0%
!! CAATAACAAGTATAAAAGAT+GGG + chr2_1:76940062-76940081 None:intergenic 20.0%
!! TCAATAACAAGTATAAAAGA+TGG + chr2_1:76940063-76940082 None:intergenic 20.0%
!! TTATTGAACATGAAAAAAGT+GGG - chr2_1:76940076-76940095 Msa0226470:intron 20.0%
!!! AACATTTTTTCAATTCAGTT+TGG - chr2_1:76940289-76940308 Msa0226470:intron 20.0%
!!! ACATTTTTTCAATTCAGTTT+GGG - chr2_1:76940290-76940309 Msa0226470:intron 20.0%
!! TATAATTACATCTAACAAGT+GGG + chr2_1:76940329-76940348 None:intergenic 20.0%
!! CTGATAAGTAATTTAAATGA+AGG - chr2_1:76940458-76940477 Msa0226470:intron 20.0%
!! TGTACCATATTTGTTTATTT+AGG - chr2_1:76940599-76940618 Msa0226470:intron 20.0%
!! GATTCCTAAATAAACAAATA+TGG + chr2_1:76940606-76940625 None:intergenic 20.0%
!! AGTCATGATATTAGTATATA+TGG - chr2_1:76940684-76940703 Msa0226470:intron 20.0%
!! TTTAATTCAAATACTTGACA+AGG + chr2_1:76940862-76940881 None:intergenic 20.0%
!! AATTCACCCTAAAATTAAAT+GGG + chr2_1:76941003-76941022 None:intergenic 20.0%
!! TAATTCACCCTAAAATTAAA+TGG + chr2_1:76941004-76941023 None:intergenic 20.0%
!! TTTAATTAAAATACTGGACA+AGG + chr2_1:76941027-76941046 None:intergenic 20.0%
!!! TGTGAAAGTTATGATTTTAT+TGG - chr2_1:76941052-76941071 Msa0226470:intron 20.0%
!! ACATATAATTTAACATGTGT+GGG + chr2_1:76941617-76941636 None:intergenic 20.0%
!! AACATATAATTTAACATGTG+TGG + chr2_1:76941618-76941637 None:intergenic 20.0%
!!! TTTTTCTTTTCAAATTGAAC+AGG - chr2_1:76941909-76941928 Msa0226470:intron 20.0%
!! CTTATGATATCAATAATTGT+AGG + chr2_1:76942173-76942192 None:intergenic 20.0%
!! GATAAAGAAAAGTTTGTAAA+AGG - chr2_1:76942232-76942251 Msa0226470:intron 20.0%
!! AAGCAATTCTAATGATAAAA+AGG - chr2_1:76942675-76942694 Msa0226470:intron 20.0%
!!! AGTTTTTTGTAGTTTATACA+AGG + chr2_1:76943022-76943041 None:intergenic 20.0%
!!! CAATTTATTTTACCTTTGTT+TGG - chr2_1:76943740-76943759 Msa0226470:intron 20.0%
!!! TGATCAAATTTTGTTTTATG+TGG - chr2_1:76943837-76943856 Msa0226470:five_prime_UTR 20.0%
! AAAGAAGAAGAAGTTATGAA+CGG + chr2_1:76938182-76938201 None:intergenic 25.0%
! AAGTGTAGAATTGATATACT+TGG + chr2_1:76938292-76938311 None:intergenic 25.0%
! GTTCTGATAAACAACTTATT+TGG - chr2_1:76938466-76938485 Msa0226470:intron 25.0%
!! AAGTTTATGGACTAAATTGA+TGG - chr2_1:76938845-76938864 Msa0226470:intron 25.0%
! TTAGATTTCAGCTAGAAATT+AGG - chr2_1:76939066-76939085 Msa0226470:intron 25.0%
! TTTCAATAGTCTTCATGTAA+AGG + chr2_1:76939510-76939529 None:intergenic 25.0%
! GAAAAAAAGGTAAAGCAATA+TGG + chr2_1:76939999-76940018 None:intergenic 25.0%
! GTTATTGAACATGAAAAAAG+TGG - chr2_1:76940075-76940094 Msa0226470:intron 25.0%
! TATTGAACATGAAAAAAGTG+GGG - chr2_1:76940077-76940096 Msa0226470:intron 25.0%
! TGATAACAAAAATCAAACAG+CGG + chr2_1:76940182-76940201 None:intergenic 25.0%
!!! TAAAATGGATGTTTTAACAC+CGG + chr2_1:76940261-76940280 None:intergenic 25.0%
!! GTGTTAAAACATCCATTTTA+GGG - chr2_1:76940261-76940280 Msa0226470:intron 25.0%
!! TGTTAAAACATCCATTTTAG+GGG - chr2_1:76940262-76940281 Msa0226470:intron 25.0%
! AAATGTTAAATCCCCTAAAA+TGG + chr2_1:76940276-76940295 None:intergenic 25.0%
! GTATAATTACATCTAACAAG+TGG + chr2_1:76940330-76940349 None:intergenic 25.0%
! ATCAATCAGATATAGGAAAA+GGG + chr2_1:76940528-76940547 None:intergenic 25.0%
! AATCAATCAGATATAGGAAA+AGG + chr2_1:76940529-76940548 None:intergenic 25.0%
! AAAAGTAGACAAAAATATGC+AGG + chr2_1:76940579-76940598 None:intergenic 25.0%
! AATTTCGTTACTTGTAATAG+TGG - chr2_1:76940639-76940658 Msa0226470:intron 25.0%
! AGTTCATCCTAAAATTAGAT+GGG + chr2_1:76940838-76940857 None:intergenic 25.0%
! TAGTTCATCCTAAAATTAGA+TGG + chr2_1:76940839-76940858 None:intergenic 25.0%
!! TATGAGTGTTACGATTTTAT+AGG - chr2_1:76940885-76940904 Msa0226470:intron 25.0%
! CATATTTATGATCTCACATT+GGG - chr2_1:76940950-76940969 Msa0226470:intron 25.0%
!!! TTTTCACCCCATTTAATTTT+AGG - chr2_1:76940993-76941012 Msa0226470:intron 25.0%
!!! TTTCACCCCATTTAATTTTA+GGG - chr2_1:76940994-76941013 Msa0226470:intron 25.0%
! ATTCACCCTAAAATTAAATG+GGG + chr2_1:76941002-76941021 None:intergenic 25.0%
! AACAAATAATAACACTACCA+AGG - chr2_1:76941328-76941347 Msa0226470:intron 25.0%
! TTAATATGCATGGTAACATT+AGG + chr2_1:76941429-76941448 None:intergenic 25.0%
! AATATTCAAAAGCAACAATG+AGG + chr2_1:76941473-76941492 None:intergenic 25.0%
!!! GTTGCTTTTGAATATTACTT+AGG - chr2_1:76941477-76941496 Msa0226470:intron 25.0%
! AATATTCAAAAGCAACAATG+AGG + chr2_1:76941473-76941492 None:intergenic 25.0%
! TATTACTTAGCAAATTGAGA+TGG - chr2_1:76941668-76941687 Msa0226470:intron 25.0%
! GTACTATAAAGTTCTTGATA+TGG - chr2_1:76941758-76941777 Msa0226470:intron 25.0%
!! TAATTCATTTTACTCTGTTG+TGG - chr2_1:76941828-76941847 Msa0226470:intron 25.0%
!! AATGTTACCATTTTCATGAT+CGG + chr2_1:76942034-76942053 None:intergenic 25.0%
!!! ACTCATGATTTTTGTTTGAA+TGG + chr2_1:76942087-76942106 None:intergenic 25.0%
!!! TCATGAGTATTGAGAAAAAT+AGG - chr2_1:76942099-76942118 Msa0226470:intron 25.0%
!! ACATAATATACGTTTTCCAA+TGG - chr2_1:76942197-76942216 Msa0226470:CDS 25.0%
!! TTGTAAAAGGTCTTATACTT+AGG - chr2_1:76942245-76942264 Msa0226470:intron 25.0%
!! TGTAAAAGGTCTTATACTTA+GGG - chr2_1:76942246-76942265 Msa0226470:intron 25.0%
! TTGAAAATATGACAAGTAAC+TGG + chr2_1:76942555-76942574 None:intergenic 25.0%
! AGTATTAAATTACCTCAATG+AGG + chr2_1:76942995-76943014 None:intergenic 25.0%
!!! TCTGTTCTTTTAATTGCTAT+TGG - chr2_1:76943043-76943062 Msa0226470:intron 25.0%
!!! CTGTTCTTTTAATTGCTATT+GGG - chr2_1:76943044-76943063 Msa0226470:intron 25.0%
! AGTGTTCTGTTATAATTTGA+AGG - chr2_1:76943169-76943188 Msa0226470:intron 25.0%
! AAATAAATGATGCTACAAAC+TGG - chr2_1:76943209-76943228 Msa0226470:intron 25.0%
! AATACATCAAGCAAAAGAAA+GGG + chr2_1:76943360-76943379 None:intergenic 25.0%
! AAAATCAAGATTGTGATATC+AGG + chr2_1:76943524-76943543 None:intergenic 25.0%
!! TCTTGATTTTCATTGTTTTC+AGG - chr2_1:76943534-76943553 Msa0226470:intron 25.0%
! ACATAGCATTGAAAATTCGA+TGG + chr2_1:76938150-76938169 None:intergenic 30.0%
TAAGTTGTTTATCAGAACAG+AGG + chr2_1:76938464-76938483 None:intergenic 30.0%
GATAAGCTGAAAACAATCTA+CGG - chr2_1:76938628-76938647 Msa0226470:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr2_1:76938678-76938697 None:intergenic 30.0%
ACATAGTTTAGGGACTAAAT+TGG - chr2_1:76938812-76938831 Msa0226470:intron 30.0%
TTGTGTTTGTAGAATTACGA+CGG - chr2_1:76938912-76938931 Msa0226470:intron 30.0%
AAATTCCAGTGACATTGTAA+GGG + chr2_1:76938954-76938973 None:intergenic 30.0%
TATATTTGTATCCTTGTGAG+TGG - chr2_1:76939405-76939424 Msa0226470:intron 30.0%
! TATTACATTTTCCACTCACA+AGG + chr2_1:76939419-76939438 None:intergenic 30.0%
TGAGTGGAAAATGTAATAAG+TGG - chr2_1:76939421-76939440 Msa0226470:intron 30.0%
ATACATCTGTTAATGCAGAA+AGG + chr2_1:76939697-76939716 None:intergenic 30.0%
TTCTGCATTAACAGATGTAT+TGG - chr2_1:76939697-76939716 Msa0226470:intron 30.0%
CTACAATCAATTACTCATGA+GGG + chr2_1:76940128-76940147 None:intergenic 30.0%
! AACACAAAAAGATGTTTTGC+TGG - chr2_1:76940218-76940237 Msa0226470:CDS 30.0%
GGTATTATCATCCTTAAATC+CGG - chr2_1:76940239-76940258 Msa0226470:CDS 30.0%
!!! ATGTTTTAACACCGGATTTA+AGG + chr2_1:76940253-76940272 None:intergenic 30.0%
! GGTGTTAAAACATCCATTTT+AGG - chr2_1:76940260-76940279 Msa0226470:intron 30.0%
TTGGGTGAATATTAAAAGTG+AGG + chr2_1:76940361-76940380 None:intergenic 30.0%
TAACATTTGTACTAGGCATT+TGG - chr2_1:76940390-76940409 Msa0226470:CDS 30.0%
! TGAAGGATTTGCTTAATCAA+AGG - chr2_1:76940475-76940494 Msa0226470:intron 30.0%
! GAAGGATTTGCTTAATCAAA+GGG - chr2_1:76940476-76940495 Msa0226470:intron 30.0%
TGGAATAATAAGACTCCTAA+AGG - chr2_1:76940704-76940723 Msa0226470:intron 30.0%
ATACTACAAACAGATCCTTT+AGG + chr2_1:76940722-76940741 None:intergenic 30.0%
TGTAGTATATTGAATCATCC+TGG - chr2_1:76940734-76940753 Msa0226470:intron 30.0%
GTAGTATATTGAATCATCCT+GGG - chr2_1:76940735-76940754 Msa0226470:intron 30.0%
! TTTTCACCCCATCTAATTTT+AGG - chr2_1:76940828-76940847 Msa0226470:intron 30.0%
GTTCATCCTAAAATTAGATG+GGG + chr2_1:76940837-76940856 None:intergenic 30.0%
CCAATGTGAGATCATAAATA+TGG + chr2_1:76940952-76940971 None:intergenic 30.0%
CCATATTTATGATCTCACAT+TGG - chr2_1:76940949-76940968 Msa0226470:intron 30.0%
TAAATGGGGTGAAAATGATT+TGG + chr2_1:76940988-76941007 None:intergenic 30.0%
GAAATTTACGATCTCACATT+CGG - chr2_1:76941120-76941139 Msa0226470:intron 30.0%
! TCCTTGATCTACTATCTTTT+AGG - chr2_1:76941224-76941243 Msa0226470:intron 30.0%
ACCTAAAAGATAGTAGATCA+AGG + chr2_1:76941228-76941247 None:intergenic 30.0%
!!! ATGTTGGTATGTTGTTTTAC+AGG - chr2_1:76941304-76941323 Msa0226470:intron 30.0%
!!! TGTTGGTATGTTGTTTTACA+GGG - chr2_1:76941305-76941324 Msa0226470:intron 30.0%
AAGTTCTTAGAGACTTAACT+TGG - chr2_1:76941866-76941885 Msa0226470:intron 30.0%
!! CATGATTTTTGTTTGAATGG+AGG + chr2_1:76942084-76942103 None:intergenic 30.0%
! TTTTCCAATGGTACTCTAAA+AGG - chr2_1:76942209-76942228 Msa0226470:intron 30.0%
! TTTCCAATGGTACTCTAAAA+GGG - chr2_1:76942210-76942229 Msa0226470:intron 30.0%
AGTATGTGTAACAGTGAAAT+AGG - chr2_1:76942326-76942345 Msa0226470:CDS 30.0%
TCTTCACTCATCAAGTAATT+TGG - chr2_1:76942373-76942392 Msa0226470:CDS 30.0%
GTTCAGAATACTTTGTATCT+TGG + chr2_1:76942415-76942434 None:intergenic 30.0%
TATTCTGAACAAGATACACA+TGG - chr2_1:76942425-76942444 Msa0226470:intron 30.0%
AAAATATGACAAGTAACTGG+AGG + chr2_1:76942552-76942571 None:intergenic 30.0%
AGGTCTGGTAATATACATTT+GGG + chr2_1:76942719-76942738 None:intergenic 30.0%
AAGGTCTGGTAATATACATT+TGG + chr2_1:76942720-76942739 None:intergenic 30.0%
!! AGCTAAAGTCATTTTCCTTT+TGG + chr2_1:76942919-76942938 None:intergenic 30.0%
AGCTTCAAAGAAACTTGAAA+AGG - chr2_1:76942935-76942954 Msa0226470:five_prime_UTR 30.0%
ACAACTCAACCATTTCTTTA+GGG - chr2_1:76943107-76943126 Msa0226470:intron 30.0%
ACACTGACAACTGTATATAT+AGG + chr2_1:76943154-76943173 None:intergenic 30.0%
AAAAGAAAGGGAAGTCATAA+GGG + chr2_1:76943348-76943367 None:intergenic 30.0%
CAATACATCAAGCAAAAGAA+AGG + chr2_1:76943361-76943380 None:intergenic 30.0%
! CTTGATGTATTGCATAGTTT+TGG - chr2_1:76943369-76943388 Msa0226470:intron 30.0%
GCATAATCTGTTACAACTTT+CGG + chr2_1:76943422-76943441 None:intergenic 30.0%
!! ACACTTTGCTGTAATTTTGT+GGG - chr2_1:76943445-76943464 Msa0226470:intron 30.0%
TAAGAAATGCCTAAAACCTT+AGG - chr2_1:76943491-76943510 Msa0226470:intron 30.0%
!! TGATTTTCATTGTTTTCAGG+TGG - chr2_1:76943537-76943556 Msa0226470:intron 30.0%
!!! TTCAGATCTTTTTTCTTCCA+GGG + chr2_1:76943692-76943711 None:intergenic 30.0%
!!! TTTCAGATCTTTTTTCTTCC+AGG + chr2_1:76943693-76943712 None:intergenic 30.0%
ATTGTCATTCTTCCAAACAA+AGG + chr2_1:76943755-76943774 None:intergenic 30.0%
! ATCTCAATCCTACTTTGTTT+GGG - chr2_1:76943805-76943824 Msa0226470:intron 30.0%
!!! TTTGTTTTATGTGGATCATC+AGG - chr2_1:76943846-76943865 Msa0226470:five_prime_UTR 30.0%
GTTATCTTGAAGAACTTGTG+AGG - chr2_1:76938606-76938625 Msa0226470:intron 35.0%
TCAAATAAGCCAATCCAAAG+AGG - chr2_1:76938712-76938731 Msa0226470:intron 35.0%
ACCCTAACGTCTTAATAGTA+GGG - chr2_1:76938742-76938761 Msa0226470:intron 35.0%
TCCCTACTATTAAGACGTTA+GGG + chr2_1:76938746-76938765 None:intergenic 35.0%
TGGAGAGAATGTGAAGTTTA+TGG - chr2_1:76938832-76938851 Msa0226470:intron 35.0%
TGTGTTTGTAGAATTACGAC+GGG - chr2_1:76938913-76938932 Msa0226470:intron 35.0%
CAAATTCCAGTGACATTGTA+AGG + chr2_1:76938955-76938974 None:intergenic 35.0%
CATAGCGACTATTAGCTAAA+GGG + chr2_1:76938993-76939012 None:intergenic 35.0%
! TGAAGGAAACTCCATGTTTT+TGG - chr2_1:76939116-76939135 Msa0226470:intron 35.0%
TGACATAGAGACCAAAAACA+TGG + chr2_1:76939130-76939149 None:intergenic 35.0%
ATTCAAAGGAGTTAGAGAAG+AGG - chr2_1:76939174-76939193 Msa0226470:intron 35.0%
TTCAAAGGAGTTAGAGAAGA+GGG - chr2_1:76939175-76939194 Msa0226470:intron 35.0%
! ATATGTCCTTTTCTTCTCGT+GGG + chr2_1:76939304-76939323 None:intergenic 35.0%
! AATATGTCCTTTTCTTCTCG+TGG + chr2_1:76939305-76939324 None:intergenic 35.0%
GAGAAGAAAAGGACATATTG+AGG - chr2_1:76939306-76939325 Msa0226470:intron 35.0%
ACAATTGCAATGTCTGTTGT+AGG - chr2_1:76939475-76939494 Msa0226470:intron 35.0%
TCTGTTAATGCAGAAAGGTA+AGG + chr2_1:76939692-76939711 None:intergenic 35.0%
!! GGAAACTTGCTTTGAAAACA+AGG - chr2_1:76939787-76939806 Msa0226470:intron 35.0%
AAGCTTCTTGCAGAATGATA+AGG + chr2_1:76939850-76939869 None:intergenic 35.0%
CCTACAATCAATTACTCATG+AGG + chr2_1:76940129-76940148 None:intergenic 35.0%
CCTCATGAGTAATTGATTGT+AGG - chr2_1:76940126-76940145 Msa0226470:CDS 35.0%
CTACATCAATACACTGCTTT+GGG + chr2_1:76940666-76940685 None:intergenic 35.0%
ACTACATCAATACACTGCTT+TGG + chr2_1:76940667-76940686 None:intergenic 35.0%
TAGATGGGGTGAAAATGATT+TGG + chr2_1:76940823-76940842 None:intergenic 35.0%
ACATACCAACATGATCAAAC+AGG + chr2_1:76941296-76941315 None:intergenic 35.0%
AGAATCTAGAAGAGAAGCAA+AGG - chr2_1:76941365-76941384 Msa0226470:intron 35.0%
TAACATGTGTGGGTAACATT+AGG + chr2_1:76941607-76941626 None:intergenic 35.0%
CAAATTGAGATGGAGATAGT+GGG - chr2_1:76941678-76941697 Msa0226470:intron 35.0%
GGATAGTTGAATATTTCACC+TGG + chr2_1:76941729-76941748 None:intergenic 35.0%
ACTTTATAGTACGCTTCAGT+AGG + chr2_1:76941750-76941769 None:intergenic 35.0%
!! TAACTTGGTAATGTTGACTC+TGG - chr2_1:76941881-76941900 Msa0226470:intron 35.0%
!! AACTTGGTAATGTTGACTCT+GGG - chr2_1:76941882-76941901 Msa0226470:intron 35.0%
GCAGAAGTAGAATATGTAGA+AGG - chr2_1:76941934-76941953 Msa0226470:intron 35.0%
AGAAGGTTATGAACTTGAAG+AGG - chr2_1:76941951-76941970 Msa0226470:intron 35.0%
! GAAGATGACATGGAAGATTT+TGG - chr2_1:76941973-76941992 Msa0226470:intron 35.0%
TTTGCAATTCATGAGTCACA+GGG - chr2_1:76942000-76942019 Msa0226470:intron 35.0%
AATGATGCCGATCATGAAAA+TGG - chr2_1:76942024-76942043 Msa0226470:intron 35.0%
TTCTTATAATAAGCGACGGA+GGG + chr2_1:76942061-76942080 None:intergenic 35.0%
GAGGTTCTTATAATAAGCGA+CGG + chr2_1:76942065-76942084 None:intergenic 35.0%
!!! TATCCCTTTTAGAGTACCAT+TGG + chr2_1:76942216-76942235 None:intergenic 35.0%
TAGAAGCTTTGCAATATGCA+TGG - chr2_1:76942284-76942303 Msa0226470:intron 35.0%
ACAAGATACACATGGTATGA+TGG - chr2_1:76942433-76942452 Msa0226470:intron 35.0%
AGAATAGAAAGATCTGACTG+CGG + chr2_1:76942591-76942610 None:intergenic 35.0%
TCTGGTAATATACATTTGGG+GGG + chr2_1:76942716-76942735 None:intergenic 35.0%
GTCTGGTAATATACATTTGG+GGG + chr2_1:76942717-76942736 None:intergenic 35.0%
GGTCTGGTAATATACATTTG+GGG + chr2_1:76942718-76942737 None:intergenic 35.0%
GACAACTCAACCATTTCTTT+AGG - chr2_1:76943106-76943125 Msa0226470:intron 35.0%
! ACCATTTCTTTAGGGAACTT+TGG - chr2_1:76943115-76943134 Msa0226470:intron 35.0%
! CCATTTCTTTAGGGAACTTT+GGG - chr2_1:76943116-76943135 Msa0226470:intron 35.0%
ACTGTTGAGATAGATGATGT+TGG - chr2_1:76943248-76943267 Msa0226470:intron 35.0%
TTGTGGTCAACATACAAAAC+TGG + chr2_1:76943318-76943337 None:intergenic 35.0%
CAAAAGAAAGGGAAGTCATA+AGG + chr2_1:76943349-76943368 None:intergenic 35.0%
!!! TGCATAGTTTTGGTTTTGTC+TGG - chr2_1:76943379-76943398 Msa0226470:intron 35.0%
CAAAATTACAGCAAAGTGTG+TGG + chr2_1:76943444-76943463 None:intergenic 35.0%
!! CACACTTTGCTGTAATTTTG+TGG - chr2_1:76943444-76943463 Msa0226470:intron 35.0%
CAAGATTGTGATATCAGGTT+TGG + chr2_1:76943519-76943538 None:intergenic 35.0%
TGCTTACGAAAGACAAAGAT+TGG - chr2_1:76943570-76943589 Msa0226470:intron 35.0%
!! CTTCAAATTAGTTTGTACCC+TGG - chr2_1:76943672-76943691 Msa0226470:intron 35.0%
!! GAATGACAATGTAGCTTTGT+TGG - chr2_1:76943765-76943784 Msa0226470:intron 35.0%
CATCTCAATCCTACTTTGTT+TGG - chr2_1:76943804-76943823 Msa0226470:intron 35.0%
! TCTCAATCCTACTTTGTTTG+GGG - chr2_1:76943806-76943825 Msa0226470:intron 35.0%
! TATGTGGATCATCAGGATTT+TGG - chr2_1:76943853-76943872 Msa0226470:five_prime_UTR 35.0%
!! ATGTTTTATTGCACACCTAG+CGG - chr2_1:76943900-76943919 Msa0226470:five_prime_UTR 35.0%
TTAAACGAAAACCTCGCACT+AGG + chr2_1:76938014-76938033 None:intergenic 40.0%
CAGAACAGAGGCTAAATCAA+TGG + chr2_1:76938452-76938471 None:intergenic 40.0%
GTCTAATAGCCTCTTTGGAT+TGG + chr2_1:76938724-76938743 None:intergenic 40.0%
TTAGGGTCTAATAGCCTCTT+TGG + chr2_1:76938729-76938748 None:intergenic 40.0%
GACCCTAACGTCTTAATAGT+AGG - chr2_1:76938741-76938760 Msa0226470:intron 40.0%
GTCCCTACTATTAAGACGTT+AGG + chr2_1:76938747-76938766 None:intergenic 40.0%
GTGTTTGTAGAATTACGACG+GGG - chr2_1:76938914-76938933 Msa0226470:intron 40.0%
AGAAACCCTTACAATGTCAC+TGG - chr2_1:76938946-76938965 Msa0226470:CDS 40.0%
GCATAGCGACTATTAGCTAA+AGG + chr2_1:76938994-76939013 None:intergenic 40.0%
AGTACCTTTGTCTTCACGAA+TGG + chr2_1:76939019-76939038 None:intergenic 40.0%
GAAATGCTTGTGTGATGTGA+AGG - chr2_1:76939099-76939118 Msa0226470:intron 40.0%
AGTTGAGCTCAGACATTCAA+AGG - chr2_1:76939160-76939179 Msa0226470:intron 40.0%
!! GAGGTGAAAGTTTGGTTCTT+TGG - chr2_1:76939274-76939293 Msa0226470:intron 40.0%
TCATACGCCAAAGGATTTGT+GGG - chr2_1:76939534-76939553 Msa0226470:intron 40.0%
ACTCTTTCCCACAAATCCTT+TGG + chr2_1:76939544-76939563 None:intergenic 40.0%
ATCTTGTGTACGAGAAGCTT+TGG + chr2_1:76939723-76939742 None:intergenic 40.0%
TGAACATGAAAAAAGTGGGG+TGG - chr2_1:76940080-76940099 Msa0226470:intron 40.0%
CAATTACTCATGAGGGTTTG+AGG + chr2_1:76940121-76940140 None:intergenic 40.0%
ACATCTAACAAGTGGGAGAA+CGG + chr2_1:76940322-76940341 None:intergenic 40.0%
AGACAAAAATATGCAGGAGC+AGG + chr2_1:76940573-76940592 None:intergenic 40.0%
TTGGGAGTTGAGATAGAAAG+AGG + chr2_1:76940773-76940792 None:intergenic 40.0%
! ATGGGGTGAAAATGATTTGG+TGG + chr2_1:76940820-76940839 None:intergenic 40.0%
! ATGGGGTGAAAATGATTTGG+TGG + chr2_1:76940820-76940839 None:intergenic 40.0%
!!! GATCAAACAGGCTGCTTTTA+TGG + chr2_1:76941284-76941303 None:intergenic 40.0%
TCTCTCTTTGTCTCTTTCCT+TGG + chr2_1:76941348-76941367 None:intergenic 40.0%
CTAACTAAACGCCTTGAAGA+AGG - chr2_1:76941514-76941533 Msa0226470:intron 40.0%
CAGCATAAACTCCTTCTTCA+AGG + chr2_1:76941528-76941547 None:intergenic 40.0%
AGTGGAGATTCAGACTGATA+AGG - chr2_1:76941570-76941589 Msa0226470:intron 40.0%
GCAAATTGAGATGGAGATAG+TGG - chr2_1:76941677-76941696 Msa0226470:intron 40.0%
ACTTGAAGAGGAAGATGACA+TGG - chr2_1:76941963-76941982 Msa0226470:intron 40.0%
GTTTGCAATTCATGAGTCAC+AGG - chr2_1:76941999-76942018 Msa0226470:intron 40.0%
GTTCTTATAATAAGCGACGG+AGG + chr2_1:76942062-76942081 None:intergenic 40.0%
GTCTTATACTTAGGGACAGA+GGG - chr2_1:76942254-76942273 Msa0226470:intron 40.0%
TGACTTCTCTTTCATTGAGC+TGG - chr2_1:76942470-76942489 Msa0226470:intron 40.0%
TTCTCTTTCATTGAGCTGGT+GGG - chr2_1:76942474-76942493 Msa0226470:intron 40.0%
ATATACATTTGGGGGGTAGA+GGG + chr2_1:76942709-76942728 None:intergenic 40.0%
AATATACATTTGGGGGGTAG+AGG + chr2_1:76942710-76942729 None:intergenic 40.0%
TTGACATCTACTAATGCAGC+TGG - chr2_1:76942849-76942868 Msa0226470:intron 40.0%
AAACTGAAGCACGTAATCAG+AGG - chr2_1:76942889-76942908 Msa0226470:intron 40.0%
GTAATCAGAGGAAAGCCAAA+AGG - chr2_1:76942901-76942920 Msa0226470:intron 40.0%
CCCAAAGTTCCCTAAAGAAA+TGG + chr2_1:76943119-76943138 None:intergenic 40.0%
TGGTCAACATACAAAACTGG+AGG + chr2_1:76943315-76943334 None:intergenic 40.0%
AAAGGGAAGTCATAAGGGAT+TGG + chr2_1:76943343-76943362 None:intergenic 40.0%
!! GGTTTGGAACCTAAGGTTTT+AGG + chr2_1:76943503-76943522 None:intergenic 40.0%
! GATATCAGGTTTGGAACCTA+AGG + chr2_1:76943510-76943529 None:intergenic 40.0%
ACAGTAGTTACATTGTCCGT+TGG - chr2_1:76943594-76943613 Msa0226470:intron 40.0%
! ATTGTCCGTTGGTTACTGAT+AGG - chr2_1:76943605-76943624 Msa0226470:intron 40.0%
GAAGTTGCTATACGAGAAAC+TGG - chr2_1:76943633-76943652 Msa0226470:intron 40.0%
AAAGTAGGATTGAGATGCTC+TGG + chr2_1:76943801-76943820 None:intergenic 40.0%
TGCAGCACGATGAGGTTATA+TGG - chr2_1:76938232-76938251 Msa0226470:three_prime_UTR 45.0%
TAGCTAAAGGGCAAGAGCTT+CGG + chr2_1:76938981-76939000 None:intergenic 45.0%
ACCTTTGTCTTCACGAATGG+TGG + chr2_1:76939016-76939035 None:intergenic 45.0%
! TGCATACTTTTCCTGAGCTG+AGG - chr2_1:76939255-76939274 Msa0226470:intron 45.0%
TGAAAGAGCTCATACGCCAA+AGG - chr2_1:76939525-76939544 Msa0226470:intron 45.0%
CTCATACGCCAAAGGATTTG+TGG - chr2_1:76939533-76939552 Msa0226470:intron 45.0%
AGTGCCTGTTCGTAATTCCT+AGG + chr2_1:76939574-76939593 None:intergenic 45.0%
AGGAATTACGAACAGGCACT+TGG - chr2_1:76939574-76939593 Msa0226470:intron 45.0%
TGGAGTCATCGACAAACATC+TGG - chr2_1:76939594-76939613 Msa0226470:intron 45.0%
TGACCAAAATGACCCAGATG+CGG - chr2_1:76939754-76939773 Msa0226470:intron 45.0%
! AATCCGCATCTGGGTCATTT+TGG + chr2_1:76939760-76939779 None:intergenic 45.0%
! ACTCATGAGGGTTTGAGGTT+AGG + chr2_1:76940116-76940135 None:intergenic 45.0%
! AGAGGCATGCTTAAAAACCC+AGG + chr2_1:76940755-76940774 None:intergenic 45.0%
AGCAGCCTGTTTGATCATGT+TGG - chr2_1:76941288-76941307 Msa0226470:intron 45.0%
AGAAGCAAAGGCTCAAACAG+CGG - chr2_1:76941377-76941396 Msa0226470:intron 45.0%
! AAGAGAAGTGCGTACTGAAG+TGG - chr2_1:76941552-76941571 Msa0226470:intron 45.0%
! GTTGCGAACCTACATTTTGG+AGG + chr2_1:76941707-76941726 None:intergenic 45.0%
! CTGGTTGCGAACCTACATTT+TGG + chr2_1:76941710-76941729 None:intergenic 45.0%
CAAAATGTAGGTTCGCAACC+AGG - chr2_1:76941708-76941727 Msa0226470:intron 45.0%
TCTTCATCCTCTTCATCAGC+AGG + chr2_1:76941795-76941814 None:intergenic 45.0%
TGCTGATGAAGAGGATGAAG+AGG - chr2_1:76941794-76941813 Msa0226470:intron 45.0%
! GGTCTTATACTTAGGGACAG+AGG - chr2_1:76942253-76942272 Msa0226470:intron 45.0%
CTTCTCTTTCATTGAGCTGG+TGG - chr2_1:76942473-76942492 Msa0226470:intron 45.0%
TATACATTTGGGGGGTAGAG+GGG + chr2_1:76942708-76942727 None:intergenic 45.0%
! AAAGCAGCACTCTAAAGGTC+TGG + chr2_1:76942734-76942753 None:intergenic 45.0%
TGCAGAAAGCAGCACTCTAA+AGG + chr2_1:76942739-76942758 None:intergenic 45.0%
!! TTAGAGTGCTGCTTTCTGCA+TGG - chr2_1:76942739-76942758 Msa0226470:intron 45.0%
GAAAACGAAGGTCCTCATTG+AGG - chr2_1:76942980-76942999 Msa0226470:five_prime_UTR 45.0%
!! GTCATAAGGGATTGGCTTTG+TGG + chr2_1:76943335-76943354 None:intergenic 45.0%
CCTCTCCTATCAGTAACCAA+CGG + chr2_1:76943613-76943632 None:intergenic 45.0%
! CGTTGGTTACTGATAGGAGA+GGG - chr2_1:76943611-76943630 Msa0226470:intron 45.0%
TCACGATCCCCAAACAAAGT+AGG + chr2_1:76943816-76943835 None:intergenic 45.0%
!! AAATATAAAATTATTACATA+AGG + chr2_1:76939392-76939411 None:intergenic 5.0%
! GCAGCTTGTTTCGTTACCTG+TGG + chr2_1:76938103-76938122 None:intergenic 50.0%
TCCAAAGATGCAGCACGATG+AGG - chr2_1:76938224-76938243 Msa0226470:three_prime_UTR 50.0%
ACCTCATCGTGCTGCATCTT+TGG + chr2_1:76938228-76938247 None:intergenic 50.0%
GCCACCATTCGTGAAGACAA+AGG - chr2_1:76939012-76939031 Msa0226470:CDS 50.0%
CCAAACTTTCACCTCAGCTC+AGG + chr2_1:76939269-76939288 None:intergenic 50.0%
CCTGAGCTGAGGTGAAAGTT+TGG - chr2_1:76939266-76939285 Msa0226470:intron 50.0%
GGAGAACCCACGAGAAGAAA+AGG - chr2_1:76939295-76939314 Msa0226470:intron 50.0%
AGGACATATTGAGGCCCTGT+TGG - chr2_1:76939315-76939334 Msa0226470:intron 50.0%
GGGAAAGAGTTAAGCTGCCT+AGG - chr2_1:76939554-76939573 Msa0226470:intron 50.0%
GCTGCCTAGGAATTACGAAC+AGG - chr2_1:76939567-76939586 Msa0226470:intron 50.0%
CCTCATACGAATCCGCATCT+GGG + chr2_1:76939769-76939788 None:intergenic 50.0%
TCCTCATACGAATCCGCATC+TGG + chr2_1:76939770-76939789 None:intergenic 50.0%
TGCAGGAGCAGGATAGACTA+TGG + chr2_1:76940562-76940581 None:intergenic 50.0%
AACAGCGGCTGCTATAGAGA+AGG - chr2_1:76941392-76941411 Msa0226470:intron 50.0%
GCTTCAACCTGCTGATGAAG+AGG - chr2_1:76941785-76941804 Msa0226470:intron 50.0%
! GCTGCTTTCTGCATGGCTAA+CGG - chr2_1:76942746-76942765 Msa0226470:intron 50.0%
CTGCTTTCTGCATGGCTAAC+GGG - chr2_1:76942747-76942766 Msa0226470:intron 50.0%
! CCGTTGGTTACTGATAGGAG+AGG - chr2_1:76943610-76943629 Msa0226470:intron 50.0%
ATGATGCATAGCTCACCGCT+AGG + chr2_1:76943918-76943937 None:intergenic 50.0%
CAACCGTGTAGGTGTGACAG+CGG + chr2_1:76938066-76938085 None:intergenic 55.0%
TGTCACACCTACACGGTTGC+CGG - chr2_1:76938067-76938086 Msa0226470:three_prime_UTR 55.0%
TACCTGTGGAAGCCGTTCTC+CGG + chr2_1:76938089-76938108 None:intergenic 55.0%
CCCAGATGCGGATTCGTATG+AGG - chr2_1:76939766-76939785 Msa0226470:intron 55.0%
GTGGGACGCCTCCAAAATGT+AGG - chr2_1:76941696-76941715 Msa0226470:intron 55.0%
! TCTGCATGGCTAACGGGCAA+TGG - chr2_1:76942753-76942772 Msa0226470:intron 55.0%
CGACTTCGTGACCTAGTGCG+AGG - chr2_1:76938000-76938019 Msa0226470:three_prime_UTR 60.0%
TCGCCGCTGTCACACCTACA+CGG - chr2_1:76938060-76938079 Msa0226470:three_prime_UTR 60.0%
CCTACACGGTTGCCGGAGAA+CGG - chr2_1:76938074-76938093 Msa0226470:three_prime_UTR 60.0%
GTGTAGGTGTGACAGCGGCG+AGG + chr2_1:76938061-76938080 None:intergenic 65.0%
CCGTTCTCCGGCAACCGTGT+AGG + chr2_1:76938077-76938096 None:intergenic 65.0%
TGCCGGAGAACGGCTTCCAC+AGG - chr2_1:76938084-76938103 Msa0226470:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 76937975 76943962 76937975 ID=Msa0226470;Name=Msa0226470
chr2_1 mRNA 76937975 76943962 76937975 ID=Msa0226470-mRNA-1;Parent=Msa0226470;Name=Msa0226470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=258|0.77|0.9|1|1|1|10|362|253
chr2_1 exon 76937975 76938381 76937975 ID=Msa0226470-mRNA-1:exon:23327;Parent=Msa0226470-mRNA-1
chr2_1 exon 76938936 76939069 76938936 ID=Msa0226470-mRNA-1:exon:23326;Parent=Msa0226470-mRNA-1
chr2_1 exon 76939943 76940006 76939943 ID=Msa0226470-mRNA-1:exon:23325;Parent=Msa0226470-mRNA-1
chr2_1 exon 76940122 76940259 76940122 ID=Msa0226470-mRNA-1:exon:23324;Parent=Msa0226470-mRNA-1
chr2_1 exon 76940346 76940438 76940346 ID=Msa0226470-mRNA-1:exon:23323;Parent=Msa0226470-mRNA-1
chr2_1 exon 76940524 76940611 76940524 ID=Msa0226470-mRNA-1:exon:23322;Parent=Msa0226470-mRNA-1
chr2_1 exon 76942129 76942226 76942129 ID=Msa0226470-mRNA-1:exon:23321;Parent=Msa0226470-mRNA-1
chr2_1 exon 76942322 76942440 76942322 ID=Msa0226470-mRNA-1:exon:23320;Parent=Msa0226470-mRNA-1
chr2_1 exon 76942904 76943013 76942904 ID=Msa0226470-mRNA-1:exon:23319;Parent=Msa0226470-mRNA-1
chr2_1 exon 76943832 76943962 76943832 ID=Msa0226470-mRNA-1:exon:23318;Parent=Msa0226470-mRNA-1
chr2_1 five_prime_UTR 76943832 76943962 76943832 ID=Msa0226470-mRNA-1:five_prime_utr;Parent=Msa0226470-mRNA-1
chr2_1 five_prime_UTR 76942904 76943013 76942904 ID=Msa0226470-mRNA-1:five_prime_utr;Parent=Msa0226470-mRNA-1
chr2_1 five_prime_UTR 76942424 76942440 76942424 ID=Msa0226470-mRNA-1:five_prime_utr;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76942322 76942423 76942322 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76942129 76942226 76942129 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76940524 76940611 76940524 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76940346 76940438 76940346 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76940122 76940259 76940122 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76939943 76940006 76939943 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76938936 76939069 76938936 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 CDS 76938337 76938381 76938337 ID=Msa0226470-mRNA-1:cds;Parent=Msa0226470-mRNA-1
chr2_1 three_prime_UTR 76937975 76938336 76937975 ID=Msa0226470-mRNA-1:three_prime_utr;Parent=Msa0226470-mRNA-1
Gene Sequence

>Msa0226470

ATGAAGACTATTGAAAGAGCTCATACGCCAAAGGATTTGTGGGAAAGAGTTAAGCTGCCTAGGAATTACGAACAGGCACTTGGAGTCATCGACAAACATCTGATGTATTGGCCAAAGCTTCTCGTACACAAGATAAAACAACGATTGACCAAAATGACCCAGATGCGGATTCGTATGAGGAAACTTGCTTTGAAAACAAGGGAACAAATAATAACACTACCAAGGAAAGAGACAAAGAGAGAATCTAGAAGAGAAGCAAAGGCTCAAACAGCGGCTGCTATAGAGAAGGCTATTGAGCATGAGCTAACTAAACGCCTTGAAGAAGGAGTTTATGCTGATAAAAGAGAAGTGCGTACTGAAGTGGAGATTCAGACTGATAAGCAAATTGAGATGGAGATAGTGGGACGCCTCCAAAATGTAGGTTCGCAACCAGGTGAAATATTCAACTATCCTACTGAAGCGTACTATAAAGTTCTTGATATGGAGAAGCTTCAACCTGCTGATGAAGAGGATGAAGAGGAAGCAGAAGTAGAATATGTAGAAGGTTATGAACTTGAAGAGGAAGATGACATGGAAGATTTTGCTGGAAGCAGTGAAGACGAAGAAACTGAAGCACGTAATCAGAGGAAAGCCAAAAGGAAAATGACTTTAGCTTCAAAGAAACTTGAAAAGGATGCCCTTGATACTAAATCAAAGAAAACGAAGGTCCTCATTGAGGTGGAACACGACGATGCTTACGAAAGACAAAGATTGGTACAGTAG

Protein sequence

>Msa0226470

MKTIERAHTPKDLWERVKLPRNYEQALGVIDKHLMYWPKLLVHKIKQRLTKMTQMRIRMRKLALKTREQIITLPRKETKRESRREAKAQTAAAIEKAIEHELTKRLEEGVYADKREVRTEVEIQTDKQIEMEIVGRLQNVGSQPGEIFNYPTEAYYKVLDMEKLQPADEEDEEEAEVEYVEGYELEEEDDMEDFAGSSEDEETEARNQRKAKRKMTLASKKLEKDALDTKSKKTKVLIEVEHDDAYERQRLVQ*