AlfalfaGEDB | Msa1236460

M. sativa cultivar zhongmu-4 / Msa1236460

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236460	XP_024629469.1	96.654	269	6	2	7	272	1	269	0.0	526

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236460	sp\|Q43385\|DOF37_ARATH	49.813	267	82	16	22	272	66	296	1.97e-63	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236460	A0A072TM78	96.654	269	6	2	7	272	1	269	0.0	526

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TFs/TRs:

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Gene ID	Type	Classification
Msa1236460	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011930	Msa1236460	0.802082	6.642433e-49	-8.615850e-47
Msa0031330	Msa1236460	0.817000	4.137211e-52	-8.615850e-47
Msa0043500	Msa1236460	0.801058	1.076752e-48	-8.615850e-47
Msa0054820	Msa1236460	0.811960	5.390202e-51	-8.615850e-47
Msa0056450	Msa1236460	0.839416	1.605408e-57	-8.615850e-47
Msa0074600	Msa1236460	0.813253	2.810051e-51	-8.615850e-47
Msa0078640	Msa1236460	0.831518	1.595101e-55	-8.615850e-47
Msa0100160	Msa1236460	0.811367	7.254836e-51	-8.615850e-47
Msa0106620	Msa1236460	0.817894	2.601644e-52	-8.615850e-47
Msa0106710	Msa1236460	0.826133	3.205859e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236460	MtrunA17_Chr8g0346551	96.654	269	6	2	7	272	1	269	0.0	526
Msa1236460	MtrunA17_Chr3g0127201	45.973	298	121	12	7	272	1	290	1.94e-68	213
Msa1236460	MtrunA17_Chr1g0188851	45.423	284	101	16	1	263	10	260	9.21e-52	171
Msa1236460	MtrunA17_Chr2g0326001	75.000	72	16	1	15	84	23	94	7.32e-34	124
Msa1236460	MtrunA17_Chr3g0117601	52.000	125	45	4	16	136	45	158	9.66e-31	117
Msa1236460	MtrunA17_Chr8g0374251	54.808	104	41	2	27	130	65	162	1.37e-30	117
Msa1236460	MtrunA17_Chr4g0031411	72.059	68	19	0	17	84	62	129	2.83e-30	115
Msa1236460	MtrunA17_Chr8g0367161	66.250	80	24	2	21	98	21	99	9.46e-30	114
Msa1236460	MtrunA17_Chr4g0010151	43.796	137	70	2	17	146	69	205	1.11e-29	114
Msa1236460	MtrunA17_Chr4g0030051	69.014	71	20	1	14	82	23	93	1.72e-29	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1236460	AT3G61850.5	52.158	278	87	19	22	272	54	312	6.02e-67	211
Msa1236460	AT3G61850.4	51.625	277	90	18	22	272	66	324	9.91e-67	211
Msa1236460	AT3G61850.2	49.813	267	82	16	22	272	54	284	1.63e-64	203
Msa1236460	AT3G61850.3	49.813	267	82	16	22	272	54	284	1.63e-64	203
Msa1236460	AT3G61850.1	49.813	267	82	16	22	272	66	296	2.00e-64	204
Msa1236460	AT2G46590.1	43.408	311	105	13	21	272	59	357	2.92e-56	184
Msa1236460	AT2G46590.2	43.408	311	105	13	21	272	71	369	4.09e-56	184
Msa1236460	AT4G24060.1	38.907	311	124	15	19	272	40	341	7.62e-44	152
Msa1236460	AT4G00940.1	38.400	250	121	7	24	267	62	284	1.72e-40	142
Msa1236460	AT4G00940.3	38.400	250	121	7	24	267	62	284	1.72e-40	142

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Find 80 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAATTCATGAATAC+AGG	0.394951	8_2:-15438125	None:intergenic
AAGAGCAAATAAATTGTCCA+AGG	0.610950	8_2:+15436942	Msa1236460:CDS
AAGGAAATTCAACTGGATAT+TGG	0.307009	8_2:+15437629	Msa1236460:CDS
AAGGATTAGAGAAGAAAGCA+AGG	0.621824	8_2:+15436915	Msa1236460:CDS
AATAAACAGCTTTCTACAAG+TGG	0.552575	8_2:+15437577	Msa1236460:CDS
AATCAAGAGAAAGAAGTTGA+AGG	0.514653	8_2:+15437684	Msa1236460:three_prime_UTR
AATTATTGTTATTAGCATAA+GGG	0.416837	8_2:-15437378	None:intergenic
AATTCAACTGGATATTGGAA+TGG	0.543811	8_2:+15437634	Msa1236460:CDS
ACGCCATGCTTGACCTAAGT+AGG	0.576352	8_2:-15437342	None:intergenic
ACTAGGTTTAACCTCTTGCA+TGG	0.575460	8_2:-15437443	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTCTTTCTTGCACTA+AGG	+	chr8_2:15436146-15436165	Msa1236460:intron	30.0%
TAATGAACATATAGGAACCT+AGG	-	chr8_2:15436433-15436452	None:intergenic	30.0%
TGAACATATATATAGATGGG+TGG	-	chr8_2:15436475-15436494	None:intergenic	30.0%
AAAGGTAAAGAGAAAGGAAA+AGG	-	chr8_2:15436576-15436595	None:intergenic	30.0%
TAGGTATATATACTCATGGA+AGG	+	chr8_2:15436866-15436885	Msa1236460:intron	30.0%
AGGTATATATACTCATGGAA+GGG	+	chr8_2:15436867-15436886	Msa1236460:intron	30.0%
AAGAGCAAATAAATTGTCCA+AGG	+	chr8_2:15436942-15436961	Msa1236460:CDS	30.0%
TGATGAACTATTATTAGGTG+TGG	-	chr8_2:15437134-15437153	None:intergenic	30.0%
TGAAAGATGTGAAACTTGTA+GGG	-	chr8_2:15437182-15437201	None:intergenic	30.0%
ATGAAAGATGTGAAACTTGT+AGG	-	chr8_2:15437183-15437202	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	15436024	15438219	15436024	ID=Msa1236460;Name=Msa1236460
chr8_2	mRNA	15436024	15438219	15436024	ID=Msa1236460-mRNA-1;Parent=Msa1236460;Name=Msa1236460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0.5\|1\|0\|0\|2\|538\|272
chr8_2	exon	15436024	15436029	15436024	ID=Msa1236460-mRNA-1:exon:5834;Parent=Msa1236460-mRNA-1
chr8_2	exon	15436869	15438219	15436869	ID=Msa1236460-mRNA-1:exon:5835;Parent=Msa1236460-mRNA-1
chr8_2	CDS	15436024	15436029	15436024	ID=Msa1236460-mRNA-1:cds;Parent=Msa1236460-mRNA-1
chr8_2	CDS	15436869	15437681	15436869	ID=Msa1236460-mRNA-1:cds;Parent=Msa1236460-mRNA-1
chr8_2	three_prime_UTR	15437682	15438219	15437682	ID=Msa1236460-mRNA-1:three_prime_utr;Parent=Msa1236460-mRNA-1

Gene Sequence

>Msa1236460

ATGCTTGTATATATACTCATGGAAGGGTTAGCTCCTAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGTTATTACAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCTTCATCATTAGCCACACCTAATAATAGTTCATCAAAAATTCCTGACCTAAATCCACCTACCCTACAAGTTTCACATCTTTCATCTCAAAACCCTAAAATACAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATAATCATGGTATGCCATCCTCATATGTTGAGATGCATAACAATAATGAATCATCATCTTCAGCTCTTGACCTACTTAGGTCAAGCATGGCGTCTAGAGGCATAAACCCTTATGCTAATAACAATAATTCTTTGATGCCAAACTCAAATGCTATTTATCCATCTGGATTCACCATGCAAGAGGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGTGGTGGAAGACTTTTGTTCCCATTTGGAGATGTTAATAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATGGGTGAAGGATCATGGTAA

Protein sequence

>Msa1236460

MLVYILMEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLATPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHNHGMPSSYVEMHNNNESSSSALDLLRSSMASRGINPYANNNNSLMPNSNAIYPSGFTMQEVKPSLGFSIDGINGNRSYDHVQVQEGGGGGGRLLFPFGDVNNKQLSTSGVEVEHNKDQQGNSTGYWNGMMGEGSW*