AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0733370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733370 MtrunA17_Chr5g0428511 87.619 105 11 1 32 134 5 109 6.81e-61 182
Msa0733370 MtrunA17_Chr5g0428551 67.826 115 24 4 32 134 47 160 1.94e-43 140
Msa0733370 MtrunA17_Chr5g0428581 67.544 114 25 4 32 134 265 377 7.28e-42 142
Msa0733370 MtrunA17_Chr1g0206551 58.491 106 40 3 32 134 257 361 2.25e-33 119
Msa0733370 MtrunA17_Chr1g0206561 60.870 92 34 2 44 134 565 655 3.50e-29 110
Msa0733370 MtrunA17_Chr1g0154371 62.637 91 31 2 44 134 591 678 1.57e-28 108
Msa0733370 MtrunA17_Chr1g0154311 54.286 105 40 4 32 134 572 670 1.58e-27 106
Msa0733370 MtrunA17_Chr5g0426941 45.299 117 57 3 24 134 550 665 7.68e-27 104
Msa0733370 MtrunA17_Chr1g0206461 44.444 135 50 5 7 134 535 651 1.58e-24 97.4
Msa0733370 MtrunA17_Chr1g0206521 43.704 135 51 5 7 134 1179 1295 1.05e-23 95.5
Msa0733370 MtrunA17_Chr1g0206521 48.113 106 36 4 7 105 537 630 1.42e-19 83.6
Msa0733370 MtrunA17_Chr1g0154331 50.962 104 42 4 32 133 260 356 2.23e-22 90.5
Msa0733370 MtrunA17_Chr1g0154351 51.648 91 35 3 44 134 593 674 1.56e-20 86.3
Msa0733370 MtrunA17_Chr1g0206431 44.915 118 51 4 9 115 80 194 5.06e-20 81.6
Msa0733370 MtrunA17_Chr1g0206361 43.966 116 57 3 26 134 555 669 5.93e-20 84.7
Msa0733370 MtrunA17_Chr1g0206531 40.000 145 58 6 7 134 539 671 6.75e-19 81.6
Msa0733370 MtrunA17_Chr1g0206451 45.865 133 56 4 9 134 567 690 2.87e-18 79.7
Msa0733370 MtrunA17_Chr1g0154321 68.000 50 15 1 44 93 603 651 9.60e-17 75.5
Msa0733370 MtrunA17_Chr1g0206351 58.182 55 22 1 50 104 595 648 7.34e-16 72.8
Msa0733370 MtrunA17_Chr1g0206391 42.222 90 44 3 24 106 250 338 1.78e-15 71.6
Msa0733370 MtrunA17_Chr8g0354331 48.235 85 35 4 51 134 343 419 2.16e-15 71.2
Msa0733370 MtrunA17_Chr1g0206261 38.261 115 62 4 26 134 301 412 9.71e-15 69.3
Msa0733370 MtrunA17_Chr5g0393981 35.294 119 69 3 23 134 605 722 1.15e-14 69.3
Msa0733370 MtrunA17_Chr3g0081001 41.304 92 47 2 43 134 578 662 1.18e-14 69.3
Msa0733370 MtrunA17_Chr3g0081011 39.130 92 49 2 43 134 574 658 1.67e-14 68.9
Msa0733370 MtrunA17_Chr1g0206401 40.244 82 42 2 26 101 562 642 1.92e-14 68.9
Msa0733370 MtrunA17_Chr6g0474991 40.476 84 43 2 27 104 77 159 4.34e-14 65.9
Msa0733370 MtrunA17_Chr3g0082941 37.234 94 43 2 41 134 406 483 9.71e-14 66.6
Msa0733370 MtrunA17_Chr6g0474961 52.632 57 26 1 48 104 156 211 1.31e-13 65.1
Msa0733370 MtrunA17_Chr6g0474871 40.476 84 43 2 27 104 779 861 2.27e-13 65.9
Msa0733370 MtrunA17_Chr6g0474861 40.476 84 43 2 27 104 500 582 2.61e-13 65.5
Msa0733370 MtrunA17_Chr3g0081101 39.583 96 52 3 40 134 69 159 2.89e-13 62.8
Msa0733370 MtrunA17_Chr6g0475131 34.513 113 59 3 28 134 224 327 4.18e-13 64.7
Msa0733370 MtrunA17_Chr3g0119041 37.931 87 47 2 24 104 550 635 4.31e-13 65.1
Msa0733370 MtrunA17_Chr8g0354281 42.188 64 36 1 51 114 578 640 5.03e-13 64.7
Msa0733370 MtrunA17_Chr8g0354351 44.186 86 37 4 51 134 576 652 6.79e-13 64.3
Msa0733370 MtrunA17_Chr8g0354421 39.286 84 44 2 51 134 606 682 6.83e-13 64.3
Msa0733370 MtrunA17_Chr6g0474901 52.632 57 26 1 48 104 807 862 7.97e-13 64.3
Msa0733370 MtrunA17_Chr8g0354271 44.444 72 32 3 32 96 553 623 9.62e-13 63.9
Msa0733370 MtrunA17_Chr2g0280751 49.057 53 26 1 42 94 759 810 1.01e-12 63.9
Msa0733370 MtrunA17_Chr6g0475091 39.286 84 44 2 27 104 795 877 1.19e-12 63.5
Msa0733370 MtrunA17_Chr1g0206221 42.529 87 45 2 48 134 65 146 1.50e-12 60.8
Msa0733370 MtrunA17_Chr1g0205771 35.537 121 64 5 26 134 555 673 1.83e-12 63.2
Msa0733370 MtrunA17_Chr6g0475201 39.506 81 42 2 28 102 789 868 1.88e-12 63.2
Msa0733370 MtrunA17_Chr6g0474811 39.286 84 44 2 27 104 787 869 1.91e-12 63.2
Msa0733370 MtrunA17_Chr8g0354441 38.095 84 45 2 51 134 593 669 2.24e-12 62.8
Msa0733370 MtrunA17_Chr6g0474851 39.024 82 43 2 26 101 141 221 2.43e-12 62.0
Msa0733370 MtrunA17_Chr3g0081071 40.476 84 45 2 51 134 172 250 3.13e-12 61.6
Msa0733370 MtrunA17_Chr1g0206331 50.000 56 27 1 48 103 575 629 3.84e-12 62.0
Msa0733370 MtrunA17_Chr8g0357631 36.667 90 51 4 33 119 690 776 4.45e-12 62.0
Msa0733370 MtrunA17_Chr1g0206321 41.758 91 47 3 48 134 72 160 4.58e-12 59.7
Msa0733370 MtrunA17_Chr8g0361281 41.121 107 43 5 33 134 735 826 4.87e-12 62.0
Msa0733370 MtrunA17_Chr8g0354431 40.000 85 42 3 51 134 585 661 4.89e-12 62.0
Msa0733370 MtrunA17_Chr8g0357761 39.726 73 40 3 33 102 702 773 8.19e-12 61.2
Msa0733370 MtrunA17_Chr6g0475181 47.368 57 29 1 45 101 53 108 9.94e-12 58.2
Msa0733370 MtrunA17_Chr7g0236341 50.000 56 27 1 43 98 752 806 1.10e-11 60.8
Msa0733370 MtrunA17_Chr8g0354291 38.824 85 45 3 50 134 27 104 1.54e-11 57.0
Msa0733370 MtrunA17_Chr5g0394011 37.755 98 48 3 37 134 585 669 1.56e-11 60.5
Msa0733370 MtrunA17_Chr3g0081031 40.476 84 43 4 51 134 595 671 1.61e-11 60.5
Msa0733370 MtrunA17_Chr8g0357661 34.444 90 53 4 33 119 85 171 1.73e-11 58.5
Msa0733370 MtrunA17_Chr8g0357711 35.556 90 52 4 33 119 699 785 1.86e-11 60.1
Msa0733370 MtrunA17_Chr4g0048581 48.000 50 25 1 45 94 767 815 2.27e-11 60.1
Msa0733370 MtrunA17_Chr2g0280711 33.028 109 63 4 27 129 743 847 2.46e-11 60.1
Msa0733370 MtrunA17_Chr7g0236511 49.254 67 31 3 43 107 715 780 3.42e-11 59.3
Msa0733370 MtrunA17_Chr1g0206231 39.130 92 41 3 48 134 586 667 6.99e-11 58.5
Msa0733370 MtrunA17_Chr8g0358081 39.744 78 40 3 27 98 674 750 9.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733370 AT4G23180.1 45.652 92 46 2 43 134 582 669 5.90e-22 90.5
Msa0733370 AT4G21400.8 46.154 104 48 4 33 134 475 572 4.29e-21 88.2
Msa0733370 AT4G21400.1 46.154 104 48 4 33 134 586 683 4.85e-21 88.2
Msa0733370 AT4G21400.2 46.154 104 48 4 33 134 574 671 5.93e-21 87.8
Msa0733370 AT4G21400.7 46.154 104 48 4 33 134 576 673 8.82e-21 87.4
Msa0733370 AT4G21410.1 48.113 106 45 5 32 134 456 554 9.04e-21 87.4
Msa0733370 AT4G21410.3 48.113 106 45 5 32 134 581 679 1.35e-20 86.7
Msa0733370 AT4G23140.1 41.573 89 50 2 46 134 588 674 3.49e-17 77.0
Msa0733370 AT4G23140.2 41.573 89 50 2 46 134 594 680 3.53e-17 77.0
Msa0733370 AT4G23160.1 41.304 92 52 2 43 134 593 682 4.29e-17 76.6
Msa0733370 AT4G23290.1 46.154 91 46 2 46 134 558 647 6.27e-17 76.3
Msa0733370 AT4G11470.1 45.977 87 44 2 50 134 581 666 8.94e-16 73.2
Msa0733370 AT4G23290.2 46.154 91 46 2 46 134 601 690 8.98e-16 73.2
Msa0733370 AT4G11470.2 45.977 87 44 2 50 134 586 671 1.01e-15 72.8
Msa0733370 AT4G23260.2 47.619 84 38 2 51 134 571 648 4.31e-15 70.9
Msa0733370 AT4G23260.1 47.619 84 38 2 51 134 582 659 4.90e-15 70.9
Msa0733370 AT4G23150.1 40.449 89 45 3 49 134 576 659 1.34e-14 69.7
Msa0733370 AT4G23320.2 50.820 61 29 1 46 106 421 480 2.71e-14 68.6
Msa0733370 AT4G23320.1 50.820 61 29 1 46 106 421 480 2.71e-14 68.6
Msa0733370 AT4G23320.3 50.820 61 29 1 46 106 442 501 3.04e-14 68.6
Msa0733370 AT4G11480.1 43.678 87 46 2 50 134 571 656 5.20e-14 67.8
Msa0733370 AT4G11480.3 43.678 87 46 2 50 134 566 651 5.30e-14 67.8
Msa0733370 AT4G00970.1 38.835 103 52 3 32 130 566 661 5.47e-14 67.8
Msa0733370 AT4G11480.4 43.678 87 46 2 50 134 563 648 5.55e-14 67.8
Msa0733370 AT4G04490.1 39.130 115 61 4 26 134 547 658 8.77e-14 67.4
Msa0733370 AT4G23130.2 35.593 118 61 4 24 134 554 663 9.77e-14 67.0
Msa0733370 AT4G00960.2 43.182 88 39 3 50 134 206 285 1.01e-13 66.2
Msa0733370 AT4G23130.1 35.593 118 61 4 24 134 550 659 1.03e-13 67.0
Msa0733370 AT4G00960.3 43.182 88 39 3 50 134 213 292 1.09e-13 66.2
Msa0733370 AT4G38830.1 36.975 119 60 3 24 134 554 665 1.23e-13 67.0
Msa0733370 AT4G00960.1 43.182 88 39 3 50 134 300 379 1.58e-13 66.2
Msa0733370 AT4G23280.3 40.426 94 44 3 45 134 531 616 1.68e-13 66.6
Msa0733370 AT4G04570.1 33.913 115 57 3 21 130 550 650 1.98e-13 66.2
Msa0733370 AT4G23310.2 38.889 90 51 2 45 134 705 790 2.52e-13 65.9
Msa0733370 AT4G23310.1 38.889 90 51 2 45 134 745 830 2.82e-13 65.9
Msa0733370 AT4G23240.2 52.542 59 25 2 48 106 268 323 3.03e-13 65.5
Msa0733370 AT4G11460.3 43.373 83 44 2 49 129 587 668 3.17e-13 65.9
Msa0733370 AT4G11460.1 43.373 83 44 2 49 129 590 671 3.17e-13 65.9
Msa0733370 AT4G23250.1 44.828 87 45 2 50 134 601 686 3.48e-13 65.5
Msa0733370 AT4G23240.1 52.542 59 25 2 48 106 575 630 5.73e-13 65.1
Msa0733370 AT4G11530.1 43.529 85 46 2 50 134 594 676 5.86e-13 65.1
Msa0733370 AT4G05200.2 33.058 121 70 3 24 134 574 693 6.86e-13 64.7
Msa0733370 AT4G05200.1 33.058 121 70 3 24 134 556 675 6.91e-13 64.7
Msa0733370 AT4G23190.1 48.571 70 30 2 46 115 590 653 7.24e-13 64.7
Msa0733370 AT4G23190.3 48.571 70 30 2 46 115 512 575 7.62e-13 64.7
Msa0733370 AT4G23190.4 48.571 70 30 2 46 115 512 575 7.62e-13 64.7
Msa0733370 AT1G61610.1 44.304 79 37 2 51 129 766 837 7.88e-13 64.7
Msa0733370 AT4G11490.1 41.772 79 39 2 24 96 531 608 8.32e-13 64.3
Msa0733370 AT4G11460.2 43.373 83 44 2 49 129 512 593 8.70e-13 64.3
Msa0733370 AT4G23280.1 40.426 94 44 3 45 134 581 666 8.95e-13 64.3
Msa0733370 AT4G23280.2 40.426 94 44 3 45 134 579 664 9.30e-13 64.3
Msa0733370 AT1G67520.5 33.594 128 79 3 4 126 454 580 1.45e-12 63.9
Msa0733370 AT1G67520.8 33.594 128 79 3 4 126 483 609 1.57e-12 63.5
Msa0733370 AT1G67520.7 33.594 128 79 3 4 126 483 609 1.57e-12 63.5
Msa0733370 AT4G27300.1 41.772 79 35 3 51 129 743 810 1.72e-12 63.5
Msa0733370 AT4G23230.1 46.552 58 30 1 43 100 571 627 1.82e-12 63.5
Msa0733370 AT1G67520.3 33.594 128 79 3 4 126 691 817 2.30e-12 63.2
Msa0733370 AT1G67520.6 33.594 128 79 3 4 126 698 824 2.44e-12 63.2
Msa0733370 AT1G67520.4 33.594 128 79 3 4 126 648 774 2.62e-12 63.2
Msa0733370 AT4G23250.2 50.877 57 27 1 50 106 596 651 5.12e-12 62.4
Msa0733370 AT4G23250.3 50.877 57 27 1 50 106 596 651 6.56e-12 62.0
Msa0733370 AT3G45860.1 40.659 91 50 3 45 134 589 676 6.90e-12 62.0
Msa0733370 AT1G11410.1 38.158 76 44 2 50 123 763 837 9.28e-12 61.6
Msa0733370 AT1G11410.4 38.158 76 44 2 50 123 770 844 9.56e-12 61.6
Msa0733370 AT1G11410.3 38.158 76 44 2 50 123 739 813 9.99e-12 61.6
Msa0733370 AT1G11410.2 38.158 76 44 2 50 123 648 722 1.05e-11 61.2
Msa0733370 AT4G23300.1 39.506 81 42 2 27 101 568 647 1.06e-11 61.2
Msa0733370 AT1G11350.1 50.000 60 24 2 37 96 745 798 1.15e-11 61.2
Msa0733370 AT4G04510.2 40.217 92 43 2 43 134 571 650 1.99e-11 60.5
Msa0733370 AT4G04510.1 40.217 92 43 2 43 134 569 648 2.25e-11 60.5
Msa0733370 AT4G21390.1 53.061 49 22 1 48 96 767 814 3.36e-11 60.1
Msa0733370 AT4G04540.4 38.272 81 44 2 21 96 526 605 4.73e-11 59.3
Msa0733370 AT4G23270.2 40.659 91 45 3 45 134 563 645 4.98e-11 59.3
Msa0733370 AT4G23270.1 40.659 91 45 3 45 134 563 645 4.98e-11 59.3
Msa0733370 AT4G23200.1 50.943 53 25 1 46 98 574 625 5.14e-11 59.3
Msa0733370 AT4G04540.1 38.272 81 44 2 21 96 555 634 5.19e-11 59.3
Msa0733370 AT4G23220.1 30.769 143 72 6 4 134 531 658 5.82e-11 59.3

Find 123 sgRNAs with CRISPR-Local

Find 693 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCCACAGCCGCATTTC+TGG 0.125699 5_1:+46603699 None:intergenic
TCTTCCCACAACCGCATTTC+TGG 0.150659 5_1:+46612789 None:intergenic
CTATATATATCTTGAAAATT+TGG 0.156466 5_1:+46615110 None:intergenic
TACTCAAACCGGTAGATATT+TGG 0.167515 5_1:-46615293 Msa0733370:five_prime_UTR
AGTCTTGACTACTTCATATT+TGG 0.179196 5_1:-46613806 Msa0733370:intron
TAAACTTCAACATCGAAATT+TGG 0.187305 5_1:-46613897 Msa0733370:five_prime_UTR
TACACCGGATATAAGTTATT+TGG 0.202034 5_1:-46615075 Msa0733370:five_prime_UTR
TCTAATTGTGCTTTCTTTGT+AGG 0.208037 5_1:+46613668 None:intergenic
CCCAATTGTTATTATAGTTT+TGG 0.235471 5_1:-46614630 Msa0733370:five_prime_UTR
TAAGAATGAATTAATCTTGA+TGG 0.255851 5_1:-46613921 Msa0733370:five_prime_UTR
TCCATCTTGTTGTGTAAATA+AGG 0.275036 5_1:-46615015 Msa0733370:five_prime_UTR
CGAAATTTGGTTAGGTTACT+TGG 0.293146 5_1:-46613884 Msa0733370:five_prime_UTR
AAATCAGATGTCTTCAGTTT+TGG 0.317093 5_1:-46613255 Msa0733370:five_prime_UTR
ATCTTAGATATGAAAGTTAT+AGG 0.319662 5_1:-46614961 Msa0733370:five_prime_UTR
CATTTATCGGCTATAATACT+TGG 0.321084 5_1:-46613331 Msa0733370:five_prime_UTR
AAACGCTACAAAATCATTAA+AGG 0.322863 5_1:-46613638 Msa0733370:five_prime_UTR
GCGGTTGTGGGAAGAGAATT+CGG 0.323493 5_1:-46612781 Msa0733370:five_prime_UTR
GATAGGTACAATCAAGTGTT+AGG 0.324834 5_1:-46615212 Msa0733370:five_prime_UTR
TGTTTGTAATATAATTAGTA+TGG 0.328043 5_1:-46612561 Msa0733370:CDS
GCTAGAATCTAACGAGGATA+TGG 0.328105 5_1:+46612687 None:intergenic
CATATCTAAGATTACACCTT+TGG 0.342125 5_1:+46614972 None:intergenic
CCGGTAGATATTTGGACTAA+TGG 0.343494 5_1:-46615285 Msa0733370:five_prime_UTR
ATCATGAGATGCATTCATAT+TGG 0.343535 5_1:-46612948 Msa0733370:five_prime_UTR
CTGTTTATGCAAGACTTTGC+AGG 0.345018 5_1:+46612595 None:intergenic
ACCAAAACTATAATAACAAT+TGG 0.348247 5_1:+46614629 None:intergenic
TTTGGATTGCAATCAATGTT+TGG 0.348379 5_1:-46615057 Msa0733370:five_prime_UTR
TCCACATCTGTTGCATTGAA+TGG 0.352658 5_1:+46615233 None:intergenic
ATGCAAGTTCTGAAGGTATA+AGG 0.363149 5_1:+46612841 None:intergenic
ATCATGAGATGCATTCATAT+TGG 0.367734 5_1:-46603861 Msa0733370:CDS
CAAAGAAAGCACAATTAGAT+TGG 0.369321 5_1:-46613664 Msa0733370:five_prime_UTR
AGACAACTGCGGCAATCATT+TGG 0.370015 5_1:+46615398 None:intergenic
GCTTGAATCTAACGAGGATA+TGG 0.382170 5_1:+46603624 None:intergenic
GAAGCCTCGTTTACTGATAC+TGG 0.382181 5_1:+46612720 None:intergenic
AATGCAGGTTCTGCAGGTAT+TGG 0.382363 5_1:+46603750 None:intergenic
GACGAGTGCCACTATTCTTT+AGG 0.383756 5_1:+46613205 None:intergenic
AAAAGGTTGTCCGTGAATTC+TGG 0.389267 5_1:-46613962 Msa0733370:five_prime_UTR
AATTGGGATTGCTATGATAA+TGG 0.390609 5_1:+46614646 None:intergenic
CACTCGTCATGGGGAAATTA+CGG 0.403256 5_1:-46613190 Msa0733370:five_prime_UTR
AATACTAAGATATCAGATTT+CGG 0.411121 5_1:-46613518 Msa0733370:five_prime_UTR
TATAATACTTGGCATGTTGC+GGG 0.412974 5_1:-46613320 Msa0733370:five_prime_UTR
GAAAATACAAGTAGAGTTGT+TGG 0.417559 5_1:-46613461 Msa0733370:five_prime_UTR
GTCTTCCAGAAATGCGGTTG+TGG 0.417812 5_1:-46612794 Msa0733370:five_prime_UTR
TCTGTTGCATTGAATGGATT+CGG 0.431895 5_1:+46615239 None:intergenic
ATGCAGGTTCTGCAGGTATT+GGG 0.433487 5_1:+46603751 None:intergenic
GTCGTTTAGCTACATTGTCT+TGG 0.441017 5_1:+46603826 None:intergenic
CGGTTGTGGGAAGAGAATTC+GGG 0.444329 5_1:-46612780 Msa0733370:five_prime_UTR
ATCTCCTTGGCCAGAATTCA+CGG 0.450654 5_1:+46613952 None:intergenic
TCTGAAGGTATAAGGAGAGT+GGG 0.451055 5_1:+46612849 None:intergenic
TTCAACATCGAAATTTGGTT+AGG 0.454299 5_1:-46613892 Msa0733370:five_prime_UTR
CTAGTTCTTGACATTATAAG+TGG 0.456364 5_1:-46613228 Msa0733370:five_prime_UTR
TATGCTACAAGAAACGTAAC+AGG 0.457591 5_1:-46615134 Msa0733370:five_prime_UTR
TTGAAAACTGAAGCTGCAAC+TGG 0.471680 5_1:-46615173 Msa0733370:five_prime_UTR
GACAAGTGATTGCCGTCAAA+AGG 0.474529 5_1:-46613979 Msa0733370:five_prime_UTR
GTGTTAGGGAAACTGTTGTA+TGG 0.474891 5_1:-46615197 Msa0733370:five_prime_UTR
ACTTACAGGCATGGAAAAGT+TGG 0.475185 5_1:-46613031 Msa0733370:intron
GCTTTCCAGAAATGCGGCTG+TGG 0.477022 5_1:-46603704 Msa0733370:CDS
AAAGAAAGCACAATTAGATT+GGG 0.479117 5_1:-46613663 Msa0733370:five_prime_UTR
AGAATAGTGGCACTCGTCAT+GGG 0.479586 5_1:-46613200 Msa0733370:five_prime_UTR
TCTTAAATTCTAGATCTCCT+TGG 0.485572 5_1:+46613939 None:intergenic
GCATGCTGCGTTACTCAAAC+CGG 0.487556 5_1:-46615304 Msa0733370:five_prime_UTR
CTATAATACTTGGCATGTTG+CGG 0.488496 5_1:-46613321 Msa0733370:five_prime_UTR
CAATCCAAATAACTTATATC+CGG 0.489118 5_1:+46615071 None:intergenic
ATACTAATTATATTACAAAC+AGG 0.490729 5_1:+46612563 None:intergenic
ATCTCCTCTGCATAATCCTA+TGG 0.493395 5_1:+46615427 None:intergenic
CTTGAACTGTTGTATAGTGA+TGG 0.497491 5_1:+46612978 None:intergenic
CCATTAGTCCAAATATCTAC+CGG 0.500087 5_1:+46615285 None:intergenic
ACCTTGAGAGGAAGTGTGAT+TGG 0.502413 5_1:+46614910 None:intergenic
GGTTTCTACAATTTCTCATA+CGG 0.504913 5_1:-46615473 Msa0733370:five_prime_UTR
AGTGCAATGGTAGCCATGTT+TGG 0.507274 5_1:+46603804 None:intergenic
CCAAAACTATAATAACAATT+GGG 0.512358 5_1:+46614630 None:intergenic
AAGAATAGTGGCACTCGTCA+TGG 0.513573 5_1:-46613201 Msa0733370:five_prime_UTR
ATAAGTGGCCTAAAGAATAG+TGG 0.526387 5_1:-46613213 Msa0733370:five_prime_UTR
TTCTGAAGGTATAAGGAGAG+TGG 0.530907 5_1:+46612848 None:intergenic
TCTTCCAGAAATGCGGTTGT+GGG 0.531220 5_1:-46612793 Msa0733370:five_prime_UTR
TACTGGAGCTGATTTAGTTG+TGG 0.536320 5_1:+46612737 None:intergenic
AGAACCTGTGTAACACATCA+TGG 0.540682 5_1:-46612538 Msa0733370:CDS
CATGGCAATACTAATTCTTG+TGG 0.551596 5_1:-46613495 Msa0733370:five_prime_UTR
CAGAAGTACAATGGTAGCCA+TGG 0.557662 5_1:+46612887 None:intergenic
ATAGGTACAATCAAGTGTTA+GGG 0.558560 5_1:-46615211 Msa0733370:five_prime_UTR
TCTTGTTGTGTAAATAAGGC+GGG 0.560987 5_1:-46615011 Msa0733370:five_prime_UTR
TTCAACTTACATACCTTGAG+AGG 0.565178 5_1:+46614898 None:intergenic
TCTCCATGCATTACATACTC+AGG 0.567447 5_1:+46613288 None:intergenic
TACAGGCATGGAAAAGTTGG+AGG 0.569638 5_1:-46613028 Msa0733370:intron
ACCAATCACACTTCCTCTCA+AGG 0.569861 5_1:-46614911 Msa0733370:intron
TCCATTCAATGCAACAGATG+TGG 0.571462 5_1:-46615234 Msa0733370:five_prime_UTR
GCCTTATTTACACAACAAGA+TGG 0.573095 5_1:+46615014 None:intergenic
CTCGTTTACTGATTTAATTG+TGG 0.577355 5_1:+46603662 None:intergenic
CTTTCCATGATGTGTTACAC+AGG 0.578291 5_1:+46612534 None:intergenic
TCCAACACAGAAATCACATA+CGG 0.579856 5_1:-46615494 None:intergenic
TGTAGCTAAACGACCAAACA+TGG 0.580196 5_1:-46603817 Msa0733370:CDS
ATCTTGTTGTGTAAATAAGG+CGG 0.585793 5_1:-46615012 Msa0733370:five_prime_UTR
CACAATTAAATCAGTAAACG+AGG 0.595493 5_1:-46603661 Msa0733370:CDS
TCAATGCAACAGATGTGGAT+AGG 0.599490 5_1:-46615229 Msa0733370:five_prime_UTR
AACAATAAAGCATACGCCAT+AGG 0.599741 5_1:-46615443 Msa0733370:five_prime_UTR
TTGTCCGTGAATTCTGGCCA+AGG 0.600099 5_1:-46613956 Msa0733370:five_prime_UTR
CTTTCCAGAAATGCGGCTGT+GGG 0.603803 5_1:-46603703 Msa0733370:CDS
TGTTGTGTAAATAAGGCGGG+TGG 0.606485 5_1:-46615008 Msa0733370:five_prime_UTR
TTGAACAAAATACAATGACA+TGG 0.608436 5_1:-46612633 Msa0733370:exon
ATCATTAAAGGTATTGCTCG+AGG 0.609745 5_1:-46613626 Msa0733370:five_prime_UTR
AGTACAATGGTAGCCATGGT+TGG 0.612894 5_1:+46612891 None:intergenic
GCATGGAAAAGTTGGAGGGA+AGG 0.613618 5_1:-46613023 Msa0733370:five_prime_UTR
TGGGAGAGTTATTAGACCAA+AGG 0.615215 5_1:-46614988 Msa0733370:five_prime_UTR
GAGGAAGTGTGATTGGTCGA+TGG 0.623534 5_1:+46614917 None:intergenic
GCTACTTAGCATGAGTGCAA+TGG 0.624772 5_1:+46603791 None:intergenic
GAATAGTGGCACTCGTCATG+GGG 0.628059 5_1:-46613199 Msa0733370:five_prime_UTR
TAGTCTTATGCAGTGTACAC+CGG 0.629306 5_1:-46615090 Msa0733370:five_prime_UTR
TTAGAAGCTTTCCAGAAATG+CGG 0.632083 5_1:-46603710 Msa0733370:CDS
TGTAGCTAAAAGACCAACCA+TGG 0.634529 5_1:-46612904 Msa0733370:five_prime_UTR
ACACCTGAGTATGTAATGCA+TGG 0.648279 5_1:-46613291 Msa0733370:five_prime_UTR
CGCATGGCTTGAATCTAACG+AGG 0.648915 5_1:+46603618 None:intergenic
GCTACTTATCAGAAGTACAA+TGG 0.649365 5_1:+46612878 None:intergenic
GTTGTGTAAATAAGGCGGGT+GGG 0.650063 5_1:-46615007 Msa0733370:five_prime_UTR
CGAGAAGTCTTCCAGAAATG+CGG 0.658752 5_1:-46612800 Msa0733370:five_prime_UTR
ACAGGCATGGAAAAGTTGGA+GGG 0.669666 5_1:-46613027 Msa0733370:intron
TAAGATATCAGATTTCGGCA+TGG 0.674063 5_1:-46613513 Msa0733370:five_prime_UTR
AGCTCCAGTATCAGTAAACG+AGG 0.684312 5_1:-46612724 Msa0733370:five_prime_UTR
GACTACGTGTGAAGAAACCA+AGG 0.686653 5_1:-46614580 Msa0733370:five_prime_UTR
AACTAAGCTAGAATCTAACG+AGG 0.694027 5_1:+46612681 None:intergenic
GTAGTCGTAAATAGATGCAG+AGG 0.701634 5_1:+46614597 None:intergenic
TTGAATTGTTAAGACAACTG+CGG 0.716571 5_1:+46615387 None:intergenic
GGTTGTGGGAAGAGAATTCG+GGG 0.724179 5_1:-46612779 Msa0733370:five_prime_UTR
TACGCCATAGGATTATGCAG+AGG 0.728915 5_1:-46615431 Msa0733370:five_prime_UTR
TCGTCATGGGGAAATTACGG+AGG 0.732451 5_1:-46613187 Msa0733370:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTAAAAATACTATAATTAT+AGG + chr5_1:46604898-46604917 Msa0733380:three_prime_UTR 10.0%
!!! AATTTTTTGTAGTTAAATTA+TGG - chr5_1:46612402-46612421 Msa0733370:intron 10.0%
!!! TAAAAAATAGAGTTTAATTT+TGG - chr5_1:46613802-46613821 Msa0733370:intron 10.0%
!! CTATATATATCTTGAAAATT+TGG + chr5_1:46604012-46604031 None:intergenic 15.0%
!! TAAAATATCAATGTAAAGAT+TGG + chr5_1:46604396-46604415 Msa0733380:CDS 15.0%
!!! ATATTTTATTAATCTTGACA+AGG - chr5_1:46604408-46604427 Msa0733370:intron 15.0%
!!! TTTTTTGTTCTTTCTTATTT+TGG - chr5_1:46604661-46604680 Msa0733370:intron 15.0%
!!! CGATGATTTTTTTTTTTTTT+TGG - chr5_1:46605715-46605734 Msa0733370:intron 15.0%
!! ATACTAATTATATTACAAAC+AGG + chr5_1:46606559-46606578 None:intergenic 15.0%
!! TGTTTGTAATATAATTAGTA+TGG - chr5_1:46606558-46606577 Msa0733370:intron 15.0%
!! TATGTTTAGATTTATAAAAG+AGG + chr5_1:46606737-46606756 None:intergenic 15.0%
!! TAAAACACATCTATAATATT+TGG - chr5_1:46606761-46606780 Msa0733370:intron 15.0%
!! TATTAGAATAATAGAACAAT+AGG - chr5_1:46607772-46607791 Msa0733370:intron 15.0%
!! TCAATAATATGAAACATAAT+AGG + chr5_1:46607808-46607827 None:intergenic 15.0%
!!! AATCTTTAAGTTTAACATTT+TGG - chr5_1:46608054-46608073 Msa0733370:intron 15.0%
!!! ACACATTTTTTTAATATAAG+AGG - chr5_1:46608127-46608146 Msa0733370:intron 15.0%
!!! TTTTCAACTAAAAAAGTAAA+AGG - chr5_1:46610110-46610129 Msa0733370:intron 15.0%
!! TAACTTTCTTTATAAAAAGT+TGG - chr5_1:46610352-46610371 Msa0733370:intron 15.0%
!!! TGATCAATGAATTTTAATTA+AGG + chr5_1:46610499-46610518 Msa0733390:CDS 15.0%
!! AATCATTGAATCTTATAAAT+GGG + chr5_1:46611846-46611865 Msa0733390:CDS 15.0%
!! AAATCATTGAATCTTATAAA+TGG + chr5_1:46611847-46611866 Msa0733390:CDS 15.0%
!! ATATTCAAAAACAAATTTGA+AGG - chr5_1:46611963-46611982 Msa0733370:intron 15.0%
!! TATTCAAAAACAAATTTGAA+GGG - chr5_1:46611964-46611983 Msa0733370:intron 15.0%
!!! TAATATATCTAAAGCTATTT+CGG - chr5_1:46612576-46612595 Msa0733370:CDS 15.0%
!! AAATAAAACAATATTAAGTG+AGG + chr5_1:46612898-46612917 None:intergenic 15.0%
!!! TTATTTTAACAAACATGATT+TGG - chr5_1:46612912-46612931 Msa0733370:five_prime_UTR 15.0%
!! TAATGTGAATATATCTAATA+TGG + chr5_1:46613055-46613074 None:intergenic 15.0%
!! TATTCACATTATTATGTATT+TGG - chr5_1:46613064-46613083 Msa0733370:intron 15.0%
!!! ATTTTTACTTTTGAAATTGA+AGG + chr5_1:46613342-46613361 None:intergenic 15.0%
!! AAGGCAAAAATAAAATAAAA+AGG - chr5_1:46613443-46613462 Msa0733370:five_prime_UTR 15.0%
!! ATCTTAGATATGAAAGTTAT+AGG - chr5_1:46604158-46604177 Msa0733370:intron 20.0%
!! CCAAAACTATAATAACAATT+GGG + chr5_1:46604492-46604511 Msa0733380:intron 20.0%
!! ACCAAAACTATAATAACAAT+TGG + chr5_1:46604493-46604512 Msa0733380:intron 20.0%
!! AACAGTGATAATTAAATGTT+TGG + chr5_1:46604593-46604612 Msa0733380:CDS 20.0%
!!! TAAAAAATTTTGTTTGGGTT+CGG - chr5_1:46604930-46604949 Msa0733370:intron 20.0%
!! TAAGAATGAATTAATCTTGA+TGG - chr5_1:46605198-46605217 Msa0733370:intron 20.0%
!! AATACTAAGATATCAGATTT+CGG - chr5_1:46605601-46605620 Msa0733370:intron 20.0%
!!! TGTTTTCTGTTTTCATTTAT+CGG - chr5_1:46605775-46605794 Msa0733370:intron 20.0%
!! TAGAGTAAATATATACTTAC+AGG - chr5_1:46606074-46606093 Msa0733370:intron 20.0%
!!! TATTTTGTTCAAAACATTGA+TGG + chr5_1:46606478-46606497 None:intergenic 20.0%
!! AAGGAAAAAGAAAATGTTAA+TGG - chr5_1:46606900-46606919 Msa0733370:intron 20.0%
!! TTAGAAACATAGTAGAAATT+AGG + chr5_1:46607184-46607203 None:intergenic 20.0%
!! TAAAGTAACTTCTATATGAA+TGG + chr5_1:46608018-46608037 None:intergenic 20.0%
!!! CATTTTTTTAATATAAGAGG+TGG - chr5_1:46608130-46608149 Msa0733370:intron 20.0%
!! AAAAGAGAGAAATATATGAA+TGG - chr5_1:46608173-46608192 Msa0733370:intron 20.0%
!!! TTATGACATTAGTTTCATTT+TGG - chr5_1:46609189-46609208 Msa0733370:intron 20.0%
!! TCATCAAAGTTGTTAATAAA+TGG + chr5_1:46609552-46609571 Msa0733390:intron 20.0%
!! TCTCTTGTTAGATTATAATA+TGG - chr5_1:46609707-46609726 Msa0733370:intron 20.0%
!!! TATGAGAATTGATTTTATGT+GGG + chr5_1:46610199-46610218 Msa0733390:CDS 20.0%
!!! TTATGAGAATTGATTTTATG+TGG + chr5_1:46610200-46610219 Msa0733390:CDS 20.0%
!!! ACAATACATCCTTTTAAATT+TGG + chr5_1:46610556-46610575 Msa0733390:CDS 20.0%
!! GAACAAAGAATAGTTAAAAA+GGG - chr5_1:46610733-46610752 Msa0733370:intron 20.0%
!! TTAGACCAACATTATATTAA+AGG - chr5_1:46611244-46611263 Msa0733370:intron 20.0%
!! TTTGTCCTTTAATATAATGT+TGG + chr5_1:46611252-46611271 Msa0733390:intron 20.0%
!! ATCATTGAATCTTATAAATG+GGG + chr5_1:46611845-46611864 Msa0733390:CDS 20.0%
!! ATTCAAAAACAAATTTGAAG+GGG - chr5_1:46611965-46611984 Msa0733370:intron 20.0%
!!! GAAATAGCTTTAGATATATT+AGG + chr5_1:46612577-46612596 None:intergenic 20.0%
!! AATATATCTAATATGGTCTA+TGG + chr5_1:46613048-46613067 None:intergenic 20.0%
!! TAGTTAAACATTAAAACTAC+AGG - chr5_1:46613604-46613623 Msa0733370:five_prime_UTR 20.0%
!! ATTCTATTCTTATGATATAG+AGG - chr5_1:46613688-46613707 Msa0733370:intron 20.0%
!!! TCTATTTTTTATTAGTGATG+GGG + chr5_1:46613793-46613812 None:intergenic 20.0%
!!! CTCTATTTTTTATTAGTGAT+GGG + chr5_1:46613794-46613813 None:intergenic 20.0%
!!! ACTCTATTTTTTATTAGTGA+TGG + chr5_1:46613795-46613814 None:intergenic 20.0%
!!! TTTGTTTTGAATAAAATGGA+TGG + chr5_1:46614624-46614643 None:intergenic 20.0%
!!! AAGAGAAAATTTTATGAGTT+AGG + chr5_1:46614751-46614770 None:intergenic 20.0%
! CAATCCAAATAACTTATATC+CGG + chr5_1:46604051-46604070 None:intergenic 25.0%
!! AAGGATTTTCAAATTTGTGT+AGG - chr5_1:46604427-46604446 Msa0733370:intron 25.0%
!! TTTTCAAATTTGTGTAGGAA+AGG - chr5_1:46604432-46604451 Msa0733370:intron 25.0%
!!! CCCAATTGTTATTATAGTTT+TGG - chr5_1:46604489-46604508 Msa0733370:intron 25.0%
! AACAGTTATGTTGCATATAT+AGG + chr5_1:46604637-46604656 Msa0733380:CDS 25.0%
! TTCTCTGATTCTAATAAACT+TGG - chr5_1:46604787-46604806 Msa0733370:intron 25.0%
!! TCCCTGTAAAAAATTTTGTT+TGG - chr5_1:46604924-46604943 Msa0733370:intron 25.0%
!!! CCCAAACAAAATTTTTTACA+GGG + chr5_1:46604928-46604947 Msa0733380:three_prime_UTR 25.0%
!!! CCCTGTAAAAAATTTTGTTT+GGG - chr5_1:46604925-46604944 Msa0733370:intron 25.0%
!!! ACCCAAACAAAATTTTTTAC+AGG + chr5_1:46604929-46604948 Msa0733380:three_prime_UTR 25.0%
! ACTATGTGACATGATTATAT+TGG - chr5_1:46605005-46605024 Msa0733370:intron 25.0%
! CTATGTGACATGATTATATT+GGG - chr5_1:46605006-46605025 Msa0733370:intron 25.0%
! TATGTGACATGATTATATTG+GGG - chr5_1:46605007-46605026 Msa0733370:intron 25.0%
!!! ACAATTAGTCTTGTCTTTTT+AGG - chr5_1:46605102-46605121 Msa0733370:intron 25.0%
!!! CAATTAGTCTTGTCTTTTTA+GGG - chr5_1:46605103-46605122 Msa0733370:intron 25.0%
! TAAACTTCAACATCGAAATT+TGG - chr5_1:46605222-46605241 Msa0733370:intron 25.0%
!! AAGTAGTCAAGACTTTTATT+GGG + chr5_1:46605307-46605326 Msa0733380:three_prime_UTR 25.0%
!! AAAGAAAGCACAATTAGATT+GGG - chr5_1:46605456-46605475 Msa0733370:intron 25.0%
! AAACGCTACAAAATCATTAA+AGG - chr5_1:46605481-46605500 Msa0733370:intron 25.0%
! TAAATATATACTTACAGGCA+TGG - chr5_1:46606079-46606098 Msa0733370:intron 25.0%
!! ATAAAAAATGCAAGTTCTGA+AGG + chr5_1:46606288-46606307 None:intergenic 25.0%
!!! TTCAGAACTTGCATTTTTTA+TGG - chr5_1:46606287-46606306 Msa0733370:intron 25.0%
! TTGAACAAAATACAATGACA+TGG - chr5_1:46606486-46606505 Msa0733370:intron 25.0%
!! ATGTTGCCATGAAAATATTT+TGG - chr5_1:46607623-46607642 Msa0733370:intron 25.0%
! TTTAAACAACATAGGAAACA+GGG + chr5_1:46607741-46607760 None:intergenic 25.0%
!! TTTTAAACAACATAGGAAAC+AGG + chr5_1:46607742-46607761 None:intergenic 25.0%
!! CCTCAATTTTTAAACAACAT+AGG + chr5_1:46607749-46607768 None:intergenic 25.0%
!! CCTATGTTGTTTAAAAATTG+AGG - chr5_1:46607746-46607765 Msa0733370:intron 25.0%
!!! GGCATCAAATTTTAAAACAT+TGG + chr5_1:46607847-46607866 None:intergenic 25.0%
!!! GTTTATTTTTTGACTGCATT+AGG + chr5_1:46608109-46608128 Msa0733390:five_prime_UTR 25.0%
! AACAAATTGTTCTTCTTTGA+GGG + chr5_1:46608504-46608523 Msa0733390:intron 25.0%
! ACAACTTCAAAGAAATTCTT+TGG + chr5_1:46608714-46608733 Msa0733390:intron 25.0%
! GGGAAATGATTAATAGAAAA+TGG - chr5_1:46608846-46608865 Msa0733370:intron 25.0%
!! TTGAGCTTTAATAACTTGAA+TGG + chr5_1:46608879-46608898 Msa0733390:intron 25.0%
! CTTCAACATAATAATTTCAC+AGG + chr5_1:46609011-46609030 Msa0733390:intron 25.0%
! ATGATGCTTAGAAGAAAAAA+TGG - chr5_1:46609359-46609378 Msa0733370:intron 25.0%
! AAAATGGAACAATGAAGAAT+TGG - chr5_1:46609375-46609394 Msa0733370:intron 25.0%
!!! TGATTTTTCAAATTCAAACC+AGG + chr5_1:46609493-46609512 Msa0733390:intron 25.0%
! GGTTTGAATTTGAAAAATCA+TGG - chr5_1:46609493-46609512 Msa0733370:intron 25.0%
! AATAAGAAGAAGGAAAAACA+AGG + chr5_1:46609578-46609597 Msa0733390:intron 25.0%
!!! TTGTTTTTCCTTCTTCTTAT+TGG - chr5_1:46609577-46609596 Msa0733370:intron 25.0%
!! GTTTTTAACCAATAAGAAGA+AGG + chr5_1:46609588-46609607 Msa0733390:intron 25.0%
! ATGATATTTGTACAACCATT+TGG + chr5_1:46609686-46609705 Msa0733390:five_prime_UTR 25.0%
!! GAAGAACCTAATATTTTCTA+AGG - chr5_1:46609888-46609907 Msa0733370:intron 25.0%
! CAAGTACCTTAGAAAATATT+AGG + chr5_1:46609897-46609916 Msa0733390:CDS 25.0%
!! CTTTAAAAAACAAGTGAGAT+TGG - chr5_1:46610220-46610239 Msa0733370:intron 25.0%
!! TCTTAATCCTTCAGTTTTTA+AGG - chr5_1:46610398-46610417 Msa0733370:intron 25.0%
!! CTTAATCCTTCAGTTTTTAA+GGG - chr5_1:46610399-46610418 Msa0733370:intron 25.0%
!!! ATATCATGAATGTTGATTTC+TGG - chr5_1:46610581-46610600 Msa0733370:intron 25.0%
! TTGACCAAAAAATCAGAATA+GGG + chr5_1:46610684-46610703 Msa0733390:CDS 25.0%
! TTTGACCAAAAAATCAGAAT+AGG + chr5_1:46610685-46610704 Msa0733390:CDS 25.0%
! GGAACAAAGAATAGTTAAAA+AGG - chr5_1:46610732-46610751 Msa0733370:intron 25.0%
! CAAGATTATAAACATTGAGT+TGG - chr5_1:46610815-46610834 Msa0733370:intron 25.0%
!! CACCTTTTATATATGAAATG+AGG - chr5_1:46610879-46610898 Msa0733370:intron 25.0%
! GTCCTCATTTCATATATAAA+AGG + chr5_1:46610884-46610903 Msa0733390:CDS 25.0%
! GTTTATATGACATGAATTTG+TGG - chr5_1:46611012-46611031 Msa0733370:intron 25.0%
! TTGTGGAATGGAATATATAA+AGG - chr5_1:46611029-46611048 Msa0733370:intron 25.0%
! TGTGGAATGGAATATATAAA+GGG - chr5_1:46611030-46611049 Msa0733370:intron 25.0%
!! TTAAAGTGTACAATTTTACC+AGG - chr5_1:46611054-46611073 Msa0733370:intron 25.0%
!! TAAAGTGTACAATTTTACCA+GGG - chr5_1:46611055-46611074 Msa0733370:intron 25.0%
! TACATTACATTAATTTCCAC+TGG - chr5_1:46611205-46611224 Msa0733370:intron 25.0%
!! TAAAGTAAATTAGGATTAGC+TGG - chr5_1:46611327-46611346 Msa0733370:intron 25.0%
! TAATGAGACCAAAAATTCAA+AGG - chr5_1:46611717-46611736 Msa0733370:intron 25.0%
! GTAGATATTACACTTTATCA+TGG + chr5_1:46612105-46612124 Msa0733390:three_prime_UTR 25.0%
!! TTAGTGTTAGTTTGGTTTAT+CGG + chr5_1:46612741-46612760 None:intergenic 25.0%
! TTCTGTGATATGAGAAATTA+TGG + chr5_1:46612805-46612824 None:intergenic 25.0%
! ATAATTTCTCATATCACAGA+AGG - chr5_1:46612804-46612823 Msa0733370:five_prime_UTR 25.0%
! ACAATATTAAGTGAGGTTAT+AGG + chr5_1:46612891-46612910 None:intergenic 25.0%
! ATGCACTAAAAATCAGAAAA+GGG + chr5_1:46612976-46612995 None:intergenic 25.0%
! AATGCACTAAAAATCAGAAA+AGG + chr5_1:46612977-46612996 None:intergenic 25.0%
! GCACTAATAATTTACAAAAC+AGG - chr5_1:46613206-46613225 Msa0733370:five_prime_UTR 25.0%
! AATCATACTTACAACTAAAC+AGG + chr5_1:46613266-46613285 None:intergenic 25.0%
!! ATTAATTTTGTCTACTACTG+AGG + chr5_1:46613294-46613313 None:intergenic 25.0%
!! ATTTGAAACAGAGATTCAAA+AGG + chr5_1:46613872-46613891 None:intergenic 25.0%
! ATTCAATCTTGAAGAATACT+TGG + chr5_1:46614250-46614269 None:intergenic 25.0%
! TTGAAACAAAGTTGTACTTA+TGG + chr5_1:46614367-46614386 None:intergenic 25.0%
! GTTAGTAGTTCCAAAATATT+TGG - chr5_1:46614432-46614451 Msa0733370:intron 25.0%
! AATACCTTATGAAACAGTAT+CGG + chr5_1:46614463-46614482 None:intergenic 25.0%
!!! GGAGTTTGTTTTGAATAAAA+TGG + chr5_1:46614628-46614647 None:intergenic 25.0%
!!! TTTGTTAAAGATGTTGGTTT+AGG + chr5_1:46614724-46614743 None:intergenic 25.0%
! AATGAAATCGAAAATGCTTA+TGG + chr5_1:46614844-46614863 None:intergenic 25.0%
!! CTTATGTGTTATAGTGTTTT+TGG + chr5_1:46614874-46614893 None:intergenic 25.0%
!! AAGAATTTCATTACCTGTTT+TGG - chr5_1:46614891-46614910 Msa0733370:intron 25.0%
! TTTCAAATAGATTCCAAAAC+AGG + chr5_1:46614907-46614926 None:intergenic 25.0%
!! ATCAATGAAATGGATTCAAA+GGG + chr5_1:46614931-46614950 None:intergenic 25.0%
!! AATCAATGAAATGGATTCAA+AGG + chr5_1:46614932-46614951 None:intergenic 25.0%
! GGAATAAACAATCAATGAAA+TGG + chr5_1:46614941-46614960 None:intergenic 25.0%
! ATTGCTAATCAGTAAAATTG+AGG - chr5_1:46614997-46615016 Msa0733370:five_prime_UTR 25.0%
!!! AATGAAGAATGTTGATGATT+TGG - chr5_1:46615049-46615068 Msa0733370:five_prime_UTR 25.0%
!! TTTGAAATGAAATGAAGAGA+TGG - chr5_1:46615108-46615127 Msa0733370:five_prime_UTR 25.0%
! TTGAAATGAAATGAAGAGAT+GGG - chr5_1:46615109-46615128 Msa0733370:five_prime_UTR 25.0%
GGTTTCTACAATTTCTCATA+CGG - chr5_1:46603646-46603665 Msa0733370:CDS 30.0%
TTGAATTGTTAAGACAACTG+CGG + chr5_1:46603735-46603754 None:intergenic 30.0%
GATTCGGAATAGAAAAATCA+GGG + chr5_1:46603867-46603886 None:intergenic 30.0%
ATAGGTACAATCAAGTGTTA+GGG - chr5_1:46603908-46603927 Msa0733370:intron 30.0%
TACACCGGATATAAGTTATT+TGG - chr5_1:46604044-46604063 Msa0733370:intron 30.0%
TTTGGATTGCAATCAATGTT+TGG - chr5_1:46604062-46604081 Msa0733370:intron 30.0%
! TCCATCTTGTTGTGTAAATA+AGG - chr5_1:46604104-46604123 Msa0733370:intron 30.0%
! ATCTTGTTGTGTAAATAAGG+CGG - chr5_1:46604107-46604126 Msa0733370:intron 30.0%
! CATATCTAAGATTACACCTT+TGG + chr5_1:46604150-46604169 None:intergenic 30.0%
ATTAAAACTGTGAACATGGA+AGG + chr5_1:46604250-46604269 Msa0733380:CDS 30.0%
!! TTCCATGTTCACAGTTTTAA+TGG - chr5_1:46604249-46604268 Msa0733370:intron 30.0%
TAATGTGTTCTTGACTTCTA+AGG + chr5_1:46604297-46604316 Msa0733380:CDS 30.0%
GAACATATCATGTTCAAGTA+TGG - chr5_1:46604330-46604349 Msa0733370:intron 30.0%
AATTGGGATTGCTATGATAA+TGG + chr5_1:46604476-46604495 Msa0733380:intron 30.0%
!!! TCACTTTGATTAGTTTTCCT+TGG + chr5_1:46604559-46604578 Msa0733380:intron 30.0%
AAACTAATCAAAGTGAGTCT+AGG - chr5_1:46604563-46604582 Msa0733370:intron 30.0%
AACTAATCAAAGTGAGTCTA+GGG - chr5_1:46604564-46604583 Msa0733370:intron 30.0%
CTAATTTCATCATCTTCTGA+AGG + chr5_1:46604712-46604731 Msa0733380:three_prime_UTR 30.0%
GTTGAATTGTAATGACTCAA+AGG + chr5_1:46604737-46604756 Msa0733380:three_prime_UTR 30.0%
TGTCCAAACATGACAAAATT+TGG - chr5_1:46605053-46605072 Msa0733370:intron 30.0%
! TAGCCAAATTTTGTCATGTT+TGG + chr5_1:46605059-46605078 Msa0733380:three_prime_UTR 30.0%
TCTTAAATTCTAGATCTCCT+TGG + chr5_1:46605183-46605202 Msa0733380:three_prime_UTR 30.0%
TTCAACATCGAAATTTGGTT+AGG - chr5_1:46605227-46605246 Msa0733370:intron 30.0%
!!! TTACTTGGTTTTACTATCGA+AGG - chr5_1:46605250-46605269 Msa0733370:intron 30.0%
!!! TACTTGGTTTTACTATCGAA+GGG - chr5_1:46605251-46605270 Msa0733370:intron 30.0%
! GAAGTAGTCAAGACTTTTAT+TGG + chr5_1:46605308-46605327 Msa0733380:three_prime_UTR 30.0%
AGTCTTGACTACTTCATATT+TGG - chr5_1:46605313-46605332 Msa0733370:intron 30.0%
TCTAATTGTGCTTTCTTTGT+AGG + chr5_1:46605454-46605473 Msa0733380:three_prime_UTR 30.0%
! CAAAGAAAGCACAATTAGAT+TGG - chr5_1:46605455-46605474 Msa0733370:intron 30.0%
GAAAATACAAGTAGAGTTGT+TGG - chr5_1:46605658-46605677 Msa0733370:intron 30.0%
! CATTTATCGGCTATAATACT+TGG - chr5_1:46605788-46605807 Msa0733370:intron 30.0%
! AAATCAGATGTCTTCAGTTT+TGG - chr5_1:46605864-46605883 Msa0733370:intron 30.0%
! CTAGTTCTTGACATTATAAG+TGG - chr5_1:46605891-46605910 Msa0733370:intron 30.0%
ATCATGAGATGCATTCATAT+TGG - chr5_1:46606171-46606190 Msa0733370:intron 30.0%
CTGTGAATTATTCTTAAACG+TGG + chr5_1:46606671-46606690 None:intergenic 30.0%
CATTTATGTAGAAAGAGCAA+AGG + chr5_1:46606838-46606857 None:intergenic 30.0%
AAAATGTTAATGGCTTCCTT+TGG - chr5_1:46606910-46606929 Msa0733370:intron 30.0%
CATAATGCTAATGAAACCAA+AGG + chr5_1:46606929-46606948 None:intergenic 30.0%
AGTATTCTCGCTAAGAAATA+TGG - chr5_1:46607023-46607042 Msa0733370:intron 30.0%
! ATGTACTTTTCTTCAACTCA+GGG - chr5_1:46607156-46607175 Msa0733370:intron 30.0%
CTAATAACTTCATCCATTGT+TGG - chr5_1:46607200-46607219 Msa0733370:intron 30.0%
TCATAACCAGAATATCCTAA+TGG - chr5_1:46607392-46607411 Msa0733370:intron 30.0%
AAGATTCCATTAGGATATTC+TGG + chr5_1:46607401-46607420 None:intergenic 30.0%
TTCTTGTGTTATGAGTACAT+TGG - chr5_1:46607592-46607611 Msa0733370:intron 30.0%
AGTCTTGAATTCCAGTTTAA+TGG - chr5_1:46607701-46607720 Msa0733370:intron 30.0%
AAGGAAGAAATCCATTAAAC+TGG + chr5_1:46607715-46607734 None:intergenic 30.0%
TTAAACAACATAGGAAACAG+GGG + chr5_1:46607740-46607759 None:intergenic 30.0%
! ACGAATTTTCCACAATATCA+AGG + chr5_1:46607875-46607894 None:intergenic 30.0%
AACAAGAAGTTTCTCATCTT+TGG - chr5_1:46608248-46608267 Msa0733370:intron 30.0%
!! GAATAGTAATAAGCTCTAAG+TGG - chr5_1:46608270-46608289 Msa0733370:intron 30.0%
TAAAAGGTTAAGAGAAGTTG+TGG + chr5_1:46608364-46608383 Msa0733390:intron 30.0%
AACAACATACAAGGCTAAAT+TGG + chr5_1:46608409-46608428 Msa0733390:intron 30.0%
GAACAAATTGTTCTTCTTTG+AGG + chr5_1:46608505-46608524 Msa0733390:intron 30.0%
! CTTTCTTTCTCTCATAGTTT+TGG + chr5_1:46608652-46608671 Msa0733390:intron 30.0%
CAAAACTATGAGAGAAAGAA+AGG - chr5_1:46608650-46608669 Msa0733370:intron 30.0%
!! TCTATACTTGCTTTTGCAAT+GGG + chr5_1:46608684-46608703 Msa0733390:intron 30.0%
!! TTCTATACTTGCTTTTGCAA+TGG + chr5_1:46608685-46608704 Msa0733390:intron 30.0%
TTATGATATCGAGTAGTTGA+CGG - chr5_1:46608738-46608757 Msa0733370:intron 30.0%
!! ACTGTAGAACAATTTTTGAG+AGG - chr5_1:46608783-46608802 Msa0733370:intron 30.0%
TTTCCAACAAAAGAACTGTT+AGG - chr5_1:46608825-46608844 Msa0733370:intron 30.0%
TTCCAACAAAAGAACTGTTA+GGG - chr5_1:46608826-46608845 Msa0733370:intron 30.0%
!!! TCAAGTATTTTAGCCTAGTA+AGG - chr5_1:46608901-46608920 Msa0733370:intron 30.0%
CTTTCCTTTAACTCTTTCTT+TGG + chr5_1:46608945-46608964 Msa0733390:intron 30.0%
TTGAAGATTGACATATTGCA+GGG - chr5_1:46609025-46609044 Msa0733370:intron 30.0%
CTTCATTCAAATGAACTTAG+TGG + chr5_1:46609083-46609102 Msa0733390:intron 30.0%
CACTAAGTTCATTTGAATGA+AGG - chr5_1:46609081-46609100 Msa0733370:intron 30.0%
GTTATTCCAGTTCAATCTTA+AGG - chr5_1:46609253-46609272 Msa0733370:intron 30.0%
! AGTTAAAAGTGAGTTGAATG+TGG + chr5_1:46609788-46609807 Msa0733390:CDS 30.0%
! ATCACTATTGTAGCTTTACA+TGG - chr5_1:46609957-46609976 Msa0733370:intron 30.0%
! GTTAGTTCTTTCAATACTTG+AGG - chr5_1:46610074-46610093 Msa0733370:intron 30.0%
AACAAGTGAGATTGGATATT+AGG - chr5_1:46610228-46610247 Msa0733370:intron 30.0%
TTGGATATTAGGAAAAGACA+TGG - chr5_1:46610239-46610258 Msa0733370:intron 30.0%
!! TTCTTGAGTTCTGTTTTTCT+TGG + chr5_1:46610287-46610306 Msa0733390:CDS 30.0%
AGAAAAACAGAACTCAAGAA+AGG - chr5_1:46610287-46610306 Msa0733370:intron 30.0%
! CCTTTTAAATTTGGAGAATG+AGG + chr5_1:46610547-46610566 Msa0733390:CDS 30.0%
CCTCATTCTCCAAATTTAAA+AGG - chr5_1:46610544-46610563 Msa0733370:intron 30.0%
! TCAATGCATATACTCTGAAA+AGG - chr5_1:46610623-46610642 Msa0733370:intron 30.0%
!!! TGAACCCTATTCTGATTTTT+TGG - chr5_1:46610677-46610696 Msa0733370:intron 30.0%
TGAATCACATTGAGACATTT+AGG - chr5_1:46610710-46610729 Msa0733370:intron 30.0%
GAATCACATTGAGACATTTA+GGG - chr5_1:46610711-46610730 Msa0733370:intron 30.0%
!!! GATGTTTTGTTTGCTTTCTT+TGG + chr5_1:46610792-46610811 Msa0733390:CDS 30.0%
TTCATTCTATGATGTGTTCT+TGG + chr5_1:46610908-46610927 Msa0733390:CDS 30.0%
AATACTTCTCTTTCTTGTAC+AGG + chr5_1:46610967-46610986 Msa0733390:intron 30.0%
TATGACATGAATTTGTGGAA+TGG - chr5_1:46611017-46611036 Msa0733370:intron 30.0%
GTGGAATGGAATATATAAAG+GGG - chr5_1:46611031-46611050 Msa0733370:intron 30.0%
! AAAGTGTACAATTTTACCAG+GGG - chr5_1:46611056-46611075 Msa0733370:intron 30.0%
AATGAGTGCTTTAACTAACA+AGG - chr5_1:46611153-46611172 Msa0733370:intron 30.0%
ATGAGTGCTTTAACTAACAA+GGG - chr5_1:46611154-46611173 Msa0733370:intron 30.0%
TTACATTAATTTCCACTGGT+TGG - chr5_1:46611209-46611228 Msa0733370:intron 30.0%
AGCGTGACATAAAGTAAATT+AGG - chr5_1:46611318-46611337 Msa0733370:intron 30.0%
!! TTTTTGAAGAGAAAGTGACT+CGG + chr5_1:46611458-46611477 Msa0733390:CDS 30.0%
TTTGAGAATGGTAAGATTGT+CGG - chr5_1:46611619-46611638 Msa0733370:intron 30.0%
AACACCACTATTACACATTA+TGG - chr5_1:46611652-46611671 Msa0733370:intron 30.0%
ACACCACTATTACACATTAT+GGG - chr5_1:46611653-46611672 Msa0733370:intron 30.0%
! CAGTCTTACCTTTGAATTTT+TGG + chr5_1:46611728-46611747 Msa0733390:CDS 30.0%
CCAAAATACTACTACTAGTA+AGG + chr5_1:46611814-46611833 Msa0733390:CDS 30.0%
! CCTTACTAGTAGTAGTATTT+TGG - chr5_1:46611811-46611830 Msa0733370:intron 30.0%
ATGCCTCTAAATATTCGTAA+AGG - chr5_1:46612000-46612019 Msa0733370:intron 30.0%
TGCCTCTAAATATTCGTAAA+GGG - chr5_1:46612001-46612020 Msa0733370:intron 30.0%
TGCTTCTGTGACAAATAAAA+AGG + chr5_1:46612049-46612068 Msa0733390:three_prime_UTR 30.0%
TCTGAATGAAGAAAGATACT+TGG + chr5_1:46612129-46612148 Msa0733390:three_prime_UTR 30.0%
GTATCTTTCTTCATTCAGAT+TGG - chr5_1:46612130-46612149 Msa0733370:intron 30.0%
! TATATCTAAAGCTATTTCGG+AGG - chr5_1:46612579-46612598 Msa0733370:CDS 30.0%
ATCAAGACTTAGTGTTAGTT+TGG + chr5_1:46612749-46612768 None:intergenic 30.0%
GTCTTGATTAGACTTCAAAA+TGG - chr5_1:46612761-46612780 Msa0733370:five_prime_UTR 30.0%
ATATTAAGTGAGGTTATAGG+AGG + chr5_1:46612888-46612907 None:intergenic 30.0%
AGTATAGTGAGAGATACAAA+AGG + chr5_1:46613014-46613033 None:intergenic 30.0%
TAAAACTTAGTCGAATCTCT+AGG + chr5_1:46613097-46613116 None:intergenic 30.0%
!! GATTCGACTAAGTTTTATGT+TGG - chr5_1:46613100-46613119 Msa0733370:intron 30.0%
ATCCTATGTTCATTGTTTGT+TGG + chr5_1:46613404-46613423 None:intergenic 30.0%
GAAAATCGTTTACAAGAGAA+AGG - chr5_1:46613424-46613443 Msa0733370:five_prime_UTR 30.0%
TAGATGTGTGAGAAAGAAAA+AGG - chr5_1:46613485-46613504 Msa0733370:five_prime_UTR 30.0%
AGATGTGTGAGAAAGAAAAA+GGG - chr5_1:46613486-46613505 Msa0733370:five_prime_UTR 30.0%
TGAATGTGTAATAGAGCTAT+AGG - chr5_1:46613509-46613528 Msa0733370:five_prime_UTR 30.0%
GAGTCACTAATAGTAATGTA+AGG + chr5_1:46613841-46613860 None:intergenic 30.0%
ATTTCAGGAAAACCAAGAAA+AGG + chr5_1:46613937-46613956 None:intergenic 30.0%
CATAATGATTATGAATTCCC+AGG - chr5_1:46614173-46614192 Msa0733370:intron 30.0%
AAACAAAGTTGTACTTATGG+TGG + chr5_1:46614364-46614383 None:intergenic 30.0%
!! GTTTTGAATAAAATGGATGG+TGG + chr5_1:46614621-46614640 None:intergenic 30.0%
!! TTAAAGATGTTGGTTTAGGT+AGG + chr5_1:46614720-46614739 None:intergenic 30.0%
! TAAGAGATCTAGGTTTTTGA+TGG + chr5_1:46614815-46614834 None:intergenic 30.0%
AAATCGAAAATGCTTATGGA+AGG + chr5_1:46614840-46614859 None:intergenic 30.0%
ATCAGTAAAATTGAGGCAAA+AGG - chr5_1:46615004-46615023 Msa0733370:five_prime_UTR 30.0%
TCAGTAAAATTGAGGCAAAA+GGG - chr5_1:46615005-46615024 Msa0733370:five_prime_UTR 30.0%
ATCATGAGATGCATTCATAT+TGG - chr5_1:46606171-46606190 Msa0733370:intron 30.0%
!!! TGCATTTTTTATGGACAGTA+GGG - chr5_1:46606296-46606315 Msa0733370:intron 30.0%
!! CTCGTTTACTGATTTAATTG+TGG + chr5_1:46615460-46615479 None:intergenic 30.0%
CACAATTAAATCAGTAAACG+AGG - chr5_1:46615458-46615477 Msa0733370:five_prime_UTR 30.0%
AACAATAAAGCATACGCCAT+AGG - chr5_1:46603676-46603695 Msa0733370:CDS 35.0%
TACTCAAACCGGTAGATATT+TGG - chr5_1:46603826-46603845 Msa0733370:CDS 35.0%
CCATTAGTCCAAATATCTAC+CGG + chr5_1:46603837-46603856 None:intergenic 35.0%
GGATTCGGAATAGAAAAATC+AGG + chr5_1:46603868-46603887 None:intergenic 35.0%
! TCTGTTGCATTGAATGGATT+CGG + chr5_1:46603883-46603902 None:intergenic 35.0%
GATAGGTACAATCAAGTGTT+AGG - chr5_1:46603907-46603926 Msa0733370:intron 35.0%
TATGCTACAAGAAACGTAAC+AGG - chr5_1:46603985-46604004 Msa0733370:intron 35.0%
!! GCCTTATTTACACAACAAGA+TGG + chr5_1:46604108-46604127 None:intergenic 35.0%
! TCTTGTTGTGTAAATAAGGC+GGG - chr5_1:46604108-46604127 Msa0733370:intron 35.0%
TTCAACTTACATACCTTGAG+AGG + chr5_1:46604224-46604243 Msa0733380:CDS 35.0%
CACCATTAAAACTGTGAACA+TGG + chr5_1:46604254-46604273 Msa0733380:CDS 35.0%
GATTCTAATAAACTTGGCGA+AGG - chr5_1:46604793-46604812 Msa0733370:intron 35.0%
CGAAATTTGGTTAGGTTACT+TGG - chr5_1:46605235-46605254 Msa0733370:intron 35.0%
!! ATCATTAAAGGTATTGCTCG+AGG - chr5_1:46605493-46605512 Msa0733370:intron 35.0%
TAAGATATCAGATTTCGGCA+TGG - chr5_1:46605606-46605625 Msa0733370:intron 35.0%
CATGGCAATACTAATTCTTG+TGG - chr5_1:46605624-46605643 Msa0733370:intron 35.0%
CTATAATACTTGGCATGTTG+CGG - chr5_1:46605798-46605817 Msa0733370:intron 35.0%
TATAATACTTGGCATGTTGC+GGG - chr5_1:46605799-46605818 Msa0733370:intron 35.0%
ATAAGTGGCCTAAAGAATAG+TGG - chr5_1:46605906-46605925 Msa0733370:intron 35.0%
CTTGAACTGTTGTATAGTGA+TGG + chr5_1:46606144-46606163 None:intergenic 35.0%
!! GTCTTTTAGCTACATTGTCT+TGG + chr5_1:46606209-46606228 None:intergenic 35.0%
! GCTACTTATCAGAAGTACAA+TGG + chr5_1:46606244-46606263 None:intergenic 35.0%
!! ATGCAAGTTCTGAAGGTATA+AGG + chr5_1:46606281-46606300 None:intergenic 35.0%
AACTAAGCTAGAATCTAACG+AGG + chr5_1:46606441-46606460 None:intergenic 35.0%
AAGCAAGATAGACTGTTGAA+AGG - chr5_1:46606881-46606900 Msa0733370:intron 35.0%
CACAATTTCTGTCTGATTCA+GGG + chr5_1:46606954-46606973 None:intergenic 35.0%
! GATGTACTTTTCTTCAACTC+AGG - chr5_1:46607155-46607174 Msa0733370:intron 35.0%
TGTCAAAGGTGGTAGATAAT+AGG + chr5_1:46607226-46607245 None:intergenic 35.0%
! TTCTGGTTATGATCATGACA+TGG + chr5_1:46607384-46607403 None:intergenic 35.0%
TCCTTCTTGAAATGCTTACA+GGG + chr5_1:46607424-46607443 None:intergenic 35.0%
ATCCTTCTTGAAATGCTTAC+AGG + chr5_1:46607425-46607444 None:intergenic 35.0%
AAGAGTGATGTTTACAGCTT+TGG + chr5_1:46607452-46607471 None:intergenic 35.0%
!! TTCCTTGATTCGGTTAATTC+TGG - chr5_1:46607485-46607504 Msa0733370:intron 35.0%
! TAACACAAGAACTTGATGGT+TGG + chr5_1:46607583-46607602 None:intergenic 35.0%
CTCATAACACAAGAACTTGA+TGG + chr5_1:46607587-46607606 None:intergenic 35.0%
! GGAGGTCCAAAATATTTTCA+TGG + chr5_1:46607632-46607651 None:intergenic 35.0%
TTCCACAATATCAAGGATAG+TGG + chr5_1:46607868-46607887 None:intergenic 35.0%
CATCAAAAGCCTTGATATCA+TGG - chr5_1:46607948-46607967 Msa0733370:intron 35.0%
!! AGCTTGTTTTCGTTACTTCA+TGG + chr5_1:46608207-46608226 Msa0733390:five_prime_UTR 35.0%
CTTGTTTATGACTACATGCT+AGG + chr5_1:46608234-46608253 Msa0733390:five_prime_UTR 35.0%
GACTGACAATTGTGGTTAAA+AGG + chr5_1:46608380-46608399 Msa0733390:intron 35.0%
AACATACAAGGCTAAATTGG+AGG + chr5_1:46608406-46608425 Msa0733390:intron 35.0%
AAGCTATGGAACAACATACA+AGG + chr5_1:46608418-46608437 Msa0733390:intron 35.0%
!!! AAGTTTTGAGAGTGAAGTGT+TGG + chr5_1:46608538-46608557 Msa0733390:intron 35.0%
TCATTCTTCGTCTTTCCTTT+CGG - chr5_1:46608573-46608592 Msa0733370:intron 35.0%
! TTCCCTAACAGTTCTTTTGT+TGG + chr5_1:46608831-46608850 Msa0733390:intron 35.0%
TTCCTGTATTCAACCTTACT+AGG + chr5_1:46608917-46608936 Msa0733390:intron 35.0%
AGCTCCAAAGAAAGAGTTAA+AGG - chr5_1:46608938-46608957 Msa0733370:intron 35.0%
! ATCCAATGCAATGAGTTTTG+AGG - chr5_1:46608965-46608984 Msa0733370:intron 35.0%
!!! AGTTTTGAGGAGATAGAAGA+AGG - chr5_1:46608978-46608997 Msa0733370:intron 35.0%
!!! GTTTTGAGGAGATAGAAGAA+GGG - chr5_1:46608979-46608998 Msa0733370:intron 35.0%
GTTGAAGATTGACATATTGC+AGG - chr5_1:46609024-46609043 Msa0733370:intron 35.0%
GGAATAGAGAGAATGTTAGA+TGG - chr5_1:46609050-46609069 Msa0733370:intron 35.0%
GTTCATTTGAATGAAGGCTT+AGG - chr5_1:46609087-46609106 Msa0733370:intron 35.0%
AATGAAGGCTTAGGATTCTA+AGG - chr5_1:46609096-46609115 Msa0733370:intron 35.0%
ATGAAGGCTTAGGATTCTAA+GGG - chr5_1:46609097-46609116 Msa0733370:intron 35.0%
! TAAGGGAATCAAGTTTTCCT+AGG - chr5_1:46609114-46609133 Msa0733370:intron 35.0%
AGTTCAATCTTAAGGCATGT+GGG - chr5_1:46609261-46609280 Msa0733370:intron 35.0%
!! CTTCATTGATGATGCTTCTT+TGG - chr5_1:46609400-46609419 Msa0733370:intron 35.0%
TGGTGATAAAAGTTGTGTGT+TGG - chr5_1:46609420-46609439 Msa0733370:intron 35.0%
GATCAACTGAAGTCAGAATT+TGG + chr5_1:46609463-46609482 Msa0733390:intron 35.0%
TTCAGTTGATCTTCATTACC+TGG - chr5_1:46609472-46609491 Msa0733370:intron 35.0%
GAAGAGAGAAAAAGTAAGAG+AGG - chr5_1:46609611-46609630 Msa0733370:intron 35.0%
TAACTTCAAAACCTGCTACA+TGG + chr5_1:46610022-46610041 Msa0733390:CDS 35.0%
!!! ATGTAGCAGGTTTTGAAGTT+AGG - chr5_1:46610021-46610040 Msa0733370:intron 35.0%
! AGTTAGGAAATTCTCTGAGA+TGG - chr5_1:46610037-46610056 Msa0733370:intron 35.0%
! AGGTAAAGTTTTCCATCTGA+TGG - chr5_1:46610130-46610149 Msa0733370:intron 35.0%
! GGTAAAGTTTTCCATCTGAT+GGG - chr5_1:46610131-46610150 Msa0733370:intron 35.0%
CACTTTCCCTTAAAAACTGA+AGG + chr5_1:46610408-46610427 Msa0733390:CDS 35.0%
! TATGCATTGACCTAGTAAGA+TGG + chr5_1:46610613-46610632 Msa0733390:CDS 35.0%
AAATCAGAATAGGGTTCATG+AGG + chr5_1:46610675-46610694 Msa0733390:CDS 35.0%
TAGTTAAAAAGGGATGCAGA+TGG - chr5_1:46610743-46610762 Msa0733370:intron 35.0%
AGTTAAAAAGGGATGCAGAT+GGG - chr5_1:46610744-46610763 Msa0733370:intron 35.0%
! TGTAGCTTGCACATGTATTT+AGG - chr5_1:46611528-46611547 Msa0733370:intron 35.0%
! GTAGCTTGCACATGTATTTA+GGG - chr5_1:46611529-46611548 Msa0733370:intron 35.0%
! TAGCTTGCACATGTATTTAG+GGG - chr5_1:46611530-46611549 Msa0733370:intron 35.0%
!!! CTGAGTTTTGACTTTGAGAA+TGG - chr5_1:46611607-46611626 Msa0733370:intron 35.0%
CTTCCCATAATGTGTAATAG+TGG + chr5_1:46611659-46611678 Msa0733390:CDS 35.0%
GACCCTTTACGAATATTTAG+AGG + chr5_1:46612006-46612025 Msa0733390:exon 35.0%
TAGAATGTCGATCAGATAGA+TGG + chr5_1:46612250-46612269 Msa0733390:three_prime_UTR 35.0%
TTGAATGAGCTAGATGAGAA+TGG + chr5_1:46612449-46612468 None:intergenic 35.0%
TTAAGCACAAATGTCAATCC+AGG - chr5_1:46612470-46612489 Msa0733370:intron 35.0%
AAGGAATGTTTCATGGACAT+AGG + chr5_1:46612531-46612550 None:intergenic 35.0%
AGATCCACCAATGATTTCAA+GGG - chr5_1:46612837-46612856 Msa0733370:five_prime_UTR 35.0%
!! AAGTTTTATGTTGGTTGTCG+AGG - chr5_1:46613109-46613128 Msa0733370:intron 35.0%
TAAAACAAGAGGGTTGTGTT+AGG + chr5_1:46613135-46613154 None:intergenic 35.0%
! TTAACCTTGCTATGCATAGT+CGG + chr5_1:46613172-46613191 None:intergenic 35.0%
ATGCATAGCAAGGTTAACAT+AGG - chr5_1:46613175-46613194 Msa0733370:five_prime_UTR 35.0%
CTTCAGTTGGAGATATTTGT+AGG + chr5_1:46613366-46613385 None:intergenic 35.0%
GACCAACAAACAATGAACAT+AGG - chr5_1:46613399-46613418 Msa0733370:five_prime_UTR 35.0%
GATATAGAGGATTGAATGAG+TGG - chr5_1:46613701-46613720 Msa0733370:intron 35.0%
GCAGCATAATAATAGCCTTT+GGG + chr5_1:46613732-46613751 None:intergenic 35.0%
TGCAGCATAATAATAGCCTT+TGG + chr5_1:46613733-46613752 None:intergenic 35.0%
!! TTGGTTTTCCTGAAATTGCT+TGG - chr5_1:46613941-46613960 Msa0733370:five_prime_UTR 35.0%
!! TCTGAACGAGTTTTATCAAG+CGG + chr5_1:46614077-46614096 None:intergenic 35.0%
! TGCAAGTAGGATTGGTATTA+AGG + chr5_1:46614121-46614140 None:intergenic 35.0%
! TATGAATTCCCAGGATTTTC+AGG - chr5_1:46614182-46614201 Msa0733370:intron 35.0%
! ATCGGATGGACCAAATATTT+TGG + chr5_1:46614445-46614464 None:intergenic 35.0%
! AGGTGATTTTCACTTGAGTT+CGG + chr5_1:46614546-46614565 None:intergenic 35.0%
!! GTGTTTGACGTTTTAGGTAA+AGG + chr5_1:46614566-46614585 None:intergenic 35.0%
! TCGTTTGTGTTTGACGTTTT+AGG + chr5_1:46614572-46614591 None:intergenic 35.0%
! AATCTTTTGTGGTTGTGTTG+TGG + chr5_1:46614685-46614704 None:intergenic 35.0%
! GAAATGTAGGGAATCTTTTG+TGG + chr5_1:46614696-46614715 None:intergenic 35.0%
GTTTAGGTAGGAGAAATGTA+GGG + chr5_1:46614708-46614727 None:intergenic 35.0%
!! GGTCAGTTTGTTAAAGATGT+TGG + chr5_1:46614730-46614749 None:intergenic 35.0%
ATGGAAGGTTTAAGAGATCT+AGG + chr5_1:46614825-46614844 None:intergenic 35.0%
TGCAGGAAAGGTGAAATTAA+TGG + chr5_1:46614962-46614981 None:intergenic 35.0%
!!! TTGTTTTGAAACTGCAGGAA+AGG + chr5_1:46614974-46614993 None:intergenic 35.0%
!!! ATCTCTTGTTTTGAAACTGC+AGG + chr5_1:46614979-46614998 None:intergenic 35.0%
TCATCAATCACAAACCACTT+GGG + chr5_1:46615160-46615179 None:intergenic 35.0%
TTCATCAATCACAAACCACT+TGG + chr5_1:46615161-46615180 None:intergenic 35.0%
GTGTAGTGTAACATCAATGA+AGG - chr5_1:46615195-46615214 Msa0733370:five_prime_UTR 35.0%
ATAAAAAATGCAGGTTCTGC+AGG + chr5_1:46615378-46615397 None:intergenic 35.0%
!!! TGCAGAACCTGCATTTTTTA+TGG - chr5_1:46615377-46615396 Msa0733370:five_prime_UTR 35.0%
CTACTGTCCATAAAAAATGC+AGG + chr5_1:46606297-46606316 None:intergenic 35.0%
!!! CTGCATTTTTTATGGACAGT+AGG - chr5_1:46615385-46615404 Msa0733370:five_prime_UTR 35.0%
TTAGAAGCTTTCCAGAAATG+CGG - chr5_1:46615409-46615428 Msa0733370:five_prime_UTR 35.0%
ATCTCCTCTGCATAATCCTA+TGG + chr5_1:46603695-46603714 None:intergenic 40.0%
!!! CCAATCGCTTCTTTTTGGTT+TGG + chr5_1:46603781-46603800 None:intergenic 40.0%
CCAAACCAAAAAGAAGCGAT+TGG - chr5_1:46603778-46603797 Msa0733370:CDS 40.0%
ACCAAAAAGAAGCGATTGGT+TGG - chr5_1:46603782-46603801 Msa0733370:CDS 40.0%
! TCCAACCAATCGCTTCTTTT+TGG + chr5_1:46603786-46603805 None:intergenic 40.0%
CCGGTAGATATTTGGACTAA+TGG - chr5_1:46603834-46603853 Msa0733370:CDS 40.0%
TCCATTCAATGCAACAGATG+TGG - chr5_1:46603885-46603904 Msa0733370:CDS 40.0%
TCCACATCTGTTGCATTGAA+TGG + chr5_1:46603889-46603908 None:intergenic 40.0%
TCAATGCAACAGATGTGGAT+AGG - chr5_1:46603890-46603909 Msa0733370:CDS 40.0%
GTGTTAGGGAAACTGTTGTA+TGG - chr5_1:46603922-46603941 Msa0733370:intron 40.0%
TTGAAAACTGAAGCTGCAAC+TGG - chr5_1:46603946-46603965 Msa0733370:intron 40.0%
!! TAGTCTTATGCAGTGTACAC+CGG - chr5_1:46604029-46604048 Msa0733370:intron 40.0%
TGGGAGAGTTATTAGACCAA+AGG - chr5_1:46604131-46604150 Msa0733370:intron 40.0%
TCATGTTCAAGTATGGTCGT+AGG - chr5_1:46604337-46604356 Msa0733370:intron 40.0%
CATGTTCAAGTATGGTCGTA+GGG - chr5_1:46604338-46604357 Msa0733370:intron 40.0%
GTAGTCGTAAATAGATGCAG+AGG + chr5_1:46604525-46604544 Msa0733380:intron 40.0%
TCTAATAAACTTGGCGAAGG+CGG - chr5_1:46604796-46604815 Msa0733370:intron 40.0%
TGACATGATTATATTGGGGC+AGG - chr5_1:46605011-46605030 Msa0733370:intron 40.0%
!!! TTTTAGGGTACGCTCTCTAA+TGG - chr5_1:46605118-46605137 Msa0733370:intron 40.0%
! ATTCACGGACAACCTTTTGA+CGG + chr5_1:46605155-46605174 Msa0733380:three_prime_UTR 40.0%
AAAAGGTTGTCCGTGAATTC+TGG - chr5_1:46605157-46605176 Msa0733370:intron 40.0%
! AGGTGTTTTCTATCTTCACG+AGG - chr5_1:46605513-46605532 Msa0733370:intron 40.0%
ACACCTGAGTATGTAATGCA+TGG - chr5_1:46605828-46605847 Msa0733370:intron 40.0%
TCTCCATGCATTACATACTC+AGG + chr5_1:46605834-46605853 None:intergenic 40.0%
ACTTACAGGCATGGAAAAGT+TGG - chr5_1:46606088-46606107 Msa0733370:intron 40.0%
TGTAGCTAAAAGACCAACCA+TGG - chr5_1:46606215-46606234 Msa0733370:intron 40.0%
! TCTGAAGGTATAAGGAGAGT+GGG + chr5_1:46606273-46606292 None:intergenic 40.0%
! TTCTGAAGGTATAAGGAGAG+TGG + chr5_1:46606274-46606293 None:intergenic 40.0%
! TACTGGAGCTGATTTAGTTG+TGG + chr5_1:46606385-46606404 None:intergenic 40.0%
GCTAGAATCTAACGAGGATA+TGG + chr5_1:46606435-46606454 None:intergenic 40.0%
CTGTTTATGCAAGACTTTGC+AGG + chr5_1:46606527-46606546 None:intergenic 40.0%
AGAACCTGTGTAACACATCA+TGG - chr5_1:46606581-46606600 Msa0733370:intron 40.0%
CTTTCCATGATGTGTTACAC+AGG + chr5_1:46606588-46606607 None:intergenic 40.0%
GGAATGAGCGTTAATGTGTA+AGG - chr5_1:46606782-46606801 Msa0733370:intron 40.0%
AGCGTTAATGTGTAAGGCTT+GGG - chr5_1:46606788-46606807 Msa0733370:intron 40.0%
TAATGTGTAAGGCTTGGGTT+TGG - chr5_1:46606793-46606812 Msa0733370:intron 40.0%
GCACAATTTCTGTCTGATTC+AGG + chr5_1:46606955-46606974 None:intergenic 40.0%
GGTAGATAATAGGCCAACAA+TGG + chr5_1:46607216-46607235 None:intergenic 40.0%
AGAGTATGTTGAAGAGGAGA+TGG + chr5_1:46607279-46607298 None:intergenic 40.0%
TTCGATGAGGAGATGATTAG+AGG + chr5_1:46607305-46607324 None:intergenic 40.0%
ATGACATGGTTGATCTTCCA+AGG + chr5_1:46607370-46607389 None:intergenic 40.0%
CTTACAGGGAAGATTCCATT+AGG + chr5_1:46607410-46607429 None:intergenic 40.0%
TCCCTGTAAGCATTTCAAGA+AGG - chr5_1:46607420-46607439 Msa0733370:intron 40.0%
GTAAACATCACTCTTCTGAG+TGG - chr5_1:46607457-46607476 Msa0733370:intron 40.0%
AGTGGCAATCTTCCTTGATT+CGG - chr5_1:46607475-46607494 Msa0733370:intron 40.0%
CTCCAGAATTAACCGAATCA+AGG + chr5_1:46607490-46607509 None:intergenic 40.0%
!! ATTCGGTTAATTCTGGAGCA+CGG - chr5_1:46607492-46607511 Msa0733370:intron 40.0%
TCAACCATGTCAAGATCCAA+CGG + chr5_1:46607521-46607540 None:intergenic 40.0%
! GGATCTTGACATGGTTGATA+AGG - chr5_1:46607523-46607542 Msa0733370:intron 40.0%
!! TGGTTGATAAGGTGCTCATA+AGG - chr5_1:46607534-46607553 Msa0733370:intron 40.0%
!! GGTTGATAAGGTGCTCATAA+GGG - chr5_1:46607535-46607554 Msa0733370:intron 40.0%
! GTTGATAAGGTGCTCATAAG+GGG - chr5_1:46607536-46607555 Msa0733370:intron 40.0%
ATTGCTTCCATCCACAAAGA+GGG + chr5_1:46607653-46607672 None:intergenic 40.0%
AATTGCTTCCATCCACAAAG+AGG + chr5_1:46607654-46607673 None:intergenic 40.0%
TGCCACTATCCTTGATATTG+TGG - chr5_1:46607863-46607882 Msa0733370:intron 40.0%
GTTTATGACTACATGCTAGG+TGG + chr5_1:46608231-46608250 Msa0733390:five_prime_UTR 40.0%
! GCTCTAAGTGGTATGACATT+AGG - chr5_1:46608282-46608301 Msa0733370:intron 40.0%
ATGGAGGTTGTTGGAAGAAT+TGG + chr5_1:46608315-46608334 Msa0733390:intron 40.0%
AGGTTAAGAGAAGTTGTGGT+CGG + chr5_1:46608360-46608379 Msa0733390:intron 40.0%
TACAAGGCTAAATTGGAGGA+AGG + chr5_1:46608402-46608421 Msa0733390:intron 40.0%
GTACTTGGAAAAGGAAGCTA+TGG + chr5_1:46608432-46608451 Msa0733390:intron 40.0%
! TCAGCTGAAGTACTTGGAAA+AGG + chr5_1:46608441-46608460 Msa0733390:intron 40.0%
AAGCCTTCAACAAGTCTTCA+AGG - chr5_1:46608460-46608479 Msa0733370:intron 40.0%
!! TGACCTTGAAGACTTGTTGA+AGG + chr5_1:46608466-46608485 Msa0733390:intron 40.0%
GAAAGGAAAGACGAAGAATG+AGG + chr5_1:46608574-46608593 Msa0733390:intron 40.0%
AGCAGTGATGATATACCGAA+AGG + chr5_1:46608591-46608610 Msa0733390:intron 40.0%
!! ATACTTGCTTTTGCAATGGG+AGG + chr5_1:46608681-46608700 Msa0733390:intron 40.0%
GTTGGAAACTCTCTCTTATG+TGG + chr5_1:46608813-46608832 Msa0733390:intron 40.0%
AGCCTAGTAAGGTTGAATAC+AGG - chr5_1:46608912-46608931 Msa0733370:intron 40.0%
CTCCTCAAAACTCATTGCAT+TGG + chr5_1:46608970-46608989 Msa0733390:intron 40.0%
AGGAGATAGAAGAAGGGATT+AGG - chr5_1:46608985-46609004 Msa0733370:intron 40.0%
AGATTGACATATTGCAGGGA+AGG - chr5_1:46609029-46609048 Msa0733370:intron 40.0%
GAACCCTTTAATCCAATTCC+CGG - chr5_1:46609155-46609174 Msa0733370:intron 40.0%
CTTCCGGGAATTGGATTAAA+GGG + chr5_1:46609161-46609180 Msa0733390:intron 40.0%
TCTTCCGGGAATTGGATTAA+AGG + chr5_1:46609162-46609181 Msa0733390:intron 40.0%
TTAATCCAATTCCCGGAAGA+TGG - chr5_1:46609162-46609181 Msa0733370:intron 40.0%
TGTCATAAGCATCCATCTTC+CGG + chr5_1:46609177-46609196 Msa0733390:intron 40.0%
CACATGCCTTAAGATTGAAC+TGG + chr5_1:46609262-46609281 Msa0733390:intron 40.0%
CAGTTCAATCTTAAGGCATG+TGG - chr5_1:46609260-46609279 Msa0733370:intron 40.0%
GGAGAGTAGAAGAGAATTCA+AGG - chr5_1:46609282-46609301 Msa0733370:intron 40.0%
GTTCGAAAGTTGTCACCAAA+TGG - chr5_1:46609668-46609687 Msa0733370:intron 40.0%
! GACATCAATTTTTGTCACCG+CGG - chr5_1:46609823-46609842 Msa0733370:intron 40.0%
TTCTGCACAGTTTCAGTGTT+TGG + chr5_1:46609851-46609870 Msa0733390:CDS 40.0%
AAGAACTAACTTTGCCTCAC+TGG + chr5_1:46610064-46610083 Msa0733390:CDS 40.0%
CTGGTCATTTCCATCTTACT+AGG - chr5_1:46610600-46610619 Msa0733370:intron 40.0%
GTATCACATCGAATGAGTTG+AGG - chr5_1:46610928-46610947 Msa0733370:intron 40.0%
TTGTGAACATGAATATCCCC+TGG + chr5_1:46611075-46611094 Msa0733390:intron 40.0%
CAAAGGTAAGACTGTCAGAT+CGG - chr5_1:46611734-46611753 Msa0733370:intron 40.0%
AAGTTTGAGCAGCTTCTTGT+GGG + chr5_1:46612174-46612193 Msa0733390:three_prime_UTR 40.0%
ATCTTGAGAAGCTCTATGTG+TGG + chr5_1:46612203-46612222 Msa0733390:three_prime_UTR 40.0%
TGCGTAACTACGACAATAAC+TGG - chr5_1:46612288-46612307 Msa0733370:intron 40.0%
GTTTGTTTCCTGAAGACCAA+AGG + chr5_1:46612509-46612528 None:intergenic 40.0%
CAAGGAGAAGGAATGTTTCA+TGG + chr5_1:46612538-46612557 None:intergenic 40.0%
TCCTTCTCCTTGATTGATTG+AGG - chr5_1:46612546-46612565 Msa0733370:CDS 40.0%
TCCTCAATCAATCAAGGAGA+AGG + chr5_1:46612550-46612569 None:intergenic 40.0%
!! AAGCTTGCTTTTGTAGCTTC+AGG + chr5_1:46612677-46612696 None:intergenic 40.0%
! GTGTTAGTTTGGTTTATCGG+TGG + chr5_1:46612738-46612757 None:intergenic 40.0%
GAGATCCACCAATGATTTCA+AGG - chr5_1:46612836-46612855 Msa0733370:five_prime_UTR 40.0%
!! GAGATACAAAAGGCTTGTTG+AGG + chr5_1:46613004-46613023 None:intergenic 40.0%
!! TTAGTCGAATCTCTAGGACA+TGG + chr5_1:46613091-46613110 None:intergenic 40.0%
ATAGCAAGGTTAACATAGGC+AGG - chr5_1:46613179-46613198 Msa0733370:five_prime_UTR 40.0%
AGCTCAAACTTCACTTCAGT+TGG + chr5_1:46613379-46613398 None:intergenic 40.0%
CCAGAGATGATTGTATGAAG+TGG + chr5_1:46613567-46613586 None:intergenic 40.0%
CCACTTCATACAATCATCTC+TGG - chr5_1:46613564-46613583 Msa0733370:five_prime_UTR 40.0%
! AGTGATGGGGTTGATTTCTA+AGG + chr5_1:46613780-46613799 None:intergenic 40.0%
! GCAACTACTTCACCTTTTCT+TGG - chr5_1:46613922-46613941 Msa0733370:five_prime_UTR 40.0%
TAGAGAAGCCAAGCAATTTC+AGG + chr5_1:46613952-46613971 None:intergenic 40.0%
GGAGAATATTCATGAGCGTT+GGG + chr5_1:46613982-46614001 None:intergenic 40.0%
TGGAGAATATTCATGAGCGT+TGG + chr5_1:46613983-46614002 None:intergenic 40.0%
CACAAGAACAGAGTCAAGAT+CGG + chr5_1:46614012-46614031 None:intergenic 40.0%
ATCAAATACTCACAGCTCCT+CGG - chr5_1:46614038-46614057 Msa0733370:intron 40.0%
AGTTTGCACCTGAAAATCCT+GGG + chr5_1:46614193-46614212 None:intergenic 40.0%
! TACTTGGTGAAACTGAGAGA+CGG + chr5_1:46614234-46614253 None:intergenic 40.0%
! TTGAAGATGAAGTGTCAAGG+TGG + chr5_1:46614335-46614354 None:intergenic 40.0%
! CCTTTGAAGATGAAGTGTCA+AGG + chr5_1:46614338-46614357 None:intergenic 40.0%
CCTTGACACTTCATCTTCAA+AGG - chr5_1:46614335-46614354 Msa0733370:intron 40.0%
! CCTTATGAAACAGTATCGGA+TGG + chr5_1:46614459-46614478 None:intergenic 40.0%
CCATCCGATACTGTTTCATA+AGG - chr5_1:46614456-46614475 Msa0733370:intron 40.0%
ACAACAGAAGTGGAGTTACA+GGG + chr5_1:46614498-46614517 None:intergenic 40.0%
AACAACAGAAGTGGAGTTAC+AGG + chr5_1:46614499-46614518 None:intergenic 40.0%
ACAAGACACAACAACAGAAG+TGG + chr5_1:46614508-46614527 None:intergenic 40.0%
! TGATTTTCACTTGAGTTCGG+AGG + chr5_1:46614543-46614562 None:intergenic 40.0%
TAGAAGGCTTGGAAGGAATT+TGG + chr5_1:46614649-46614668 None:intergenic 40.0%
TGGATGCTTACTTGGATAGA+AGG + chr5_1:46614665-46614684 None:intergenic 40.0%
TTGTGTTGTGGATGCTTACT+TGG + chr5_1:46614673-46614692 None:intergenic 40.0%
GGTTTAGGTAGGAGAAATGT+AGG + chr5_1:46614709-46614728 None:intergenic 40.0%
GATGGAGGAGAATGTGATTA+GGG + chr5_1:46614797-46614816 None:intergenic 40.0%
TGATGGAGGAGAATGTGATT+AGG + chr5_1:46614798-46614817 None:intergenic 40.0%
! GAGATCTAGGTTTTTGATGG+AGG + chr5_1:46614812-46614831 None:intergenic 40.0%
GTTTAAGAGTTGTTCCCAAG+TGG - chr5_1:46615143-46615162 Msa0733370:five_prime_UTR 40.0%
GTCGTTTAGCTACATTGTCT+TGG + chr5_1:46615296-46615315 None:intergenic 40.0%
TGTAGCTAAACGACCAAACA+TGG - chr5_1:46615302-46615321 Msa0733370:five_prime_UTR 40.0%
TACGCCATAGGATTATGCAG+AGG - chr5_1:46603688-46603707 Msa0733370:CDS 45.0%
AGACAACTGCGGCAATCATT+TGG + chr5_1:46603724-46603743 None:intergenic 45.0%
TGTTGTGTAAATAAGGCGGG+TGG - chr5_1:46604111-46604130 Msa0733370:intron 45.0%
GTTGTGTAAATAAGGCGGGT+GGG - chr5_1:46604112-46604131 Msa0733370:intron 45.0%
ACCAATCACACTTCCTCTCA+AGG - chr5_1:46604208-46604227 Msa0733370:intron 45.0%
! ACCTTGAGAGGAAGTGTGAT+TGG + chr5_1:46604212-46604231 Msa0733380:CDS 45.0%
TCAAGTATGGTCGTAGGGTT+TGG - chr5_1:46604343-46604362 Msa0733370:intron 45.0%
! GTCGTAGGGTTTGGTTGATT+AGG - chr5_1:46604352-46604371 Msa0733370:intron 45.0%
GACTACGTGTGAAGAAACCA+AGG - chr5_1:46604539-46604558 Msa0733370:intron 45.0%
GACAAGTGATTGCCGTCAAA+AGG - chr5_1:46605140-46605159 Msa0733370:intron 45.0%
ATCTCCTTGGCCAGAATTCA+CGG + chr5_1:46605170-46605189 Msa0733380:three_prime_UTR 45.0%
! GACGAGTGCCACTATTCTTT+AGG + chr5_1:46605917-46605936 None:intergenic 45.0%
AAGAATAGTGGCACTCGTCA+TGG - chr5_1:46605918-46605937 Msa0733370:intron 45.0%
AGAATAGTGGCACTCGTCAT+GGG - chr5_1:46605919-46605938 Msa0733370:intron 45.0%
CACTCGTCATGGGGAAATTA+CGG - chr5_1:46605929-46605948 Msa0733370:intron 45.0%
TACAGGCATGGAAAAGTTGG+AGG - chr5_1:46606091-46606110 Msa0733370:intron 45.0%
ACAGGCATGGAAAAGTTGGA+GGG - chr5_1:46606092-46606111 Msa0733370:intron 45.0%
AGTACAATGGTAGCCATGGT+TGG + chr5_1:46606231-46606250 None:intergenic 45.0%
! CAGAAGTACAATGGTAGCCA+TGG + chr5_1:46606235-46606254 None:intergenic 45.0%
CGAGAAGTCTTCCAGAAATG+CGG - chr5_1:46606319-46606338 Msa0733370:intron 45.0%
TCTTCCAGAAATGCGGTTGT+GGG - chr5_1:46606326-46606345 Msa0733370:intron 45.0%
AGCTCCAGTATCAGTAAACG+AGG - chr5_1:46606395-46606414 Msa0733370:intron 45.0%
GAAGCCTCGTTTACTGATAC+TGG + chr5_1:46606402-46606421 None:intergenic 45.0%
GAGCGTTAATGTGTAAGGCT+TGG - chr5_1:46606787-46606806 Msa0733370:intron 45.0%
CAGATGCTCCATGTTATGCT+GGG + chr5_1:46606996-46607015 None:intergenic 45.0%
TCAGATGCTCCATGTTATGC+TGG + chr5_1:46606997-46607016 None:intergenic 45.0%
!! ATTGGCTTGTGTGTCAAAGG+TGG + chr5_1:46607237-46607256 None:intergenic 45.0%
!! TGCATTGGCTTGTGTGTCAA+AGG + chr5_1:46607240-46607259 None:intergenic 45.0%
GCAGATGCTTCAGATTGCAT+TGG + chr5_1:46607255-46607274 None:intergenic 45.0%
! AGGTGGAGAGTATGTTGAAG+AGG + chr5_1:46607285-46607304 None:intergenic 45.0%
GATGAGGAGATGATTAGAGG+TGG + chr5_1:46607302-46607321 None:intergenic 45.0%
! TTGATCTTCCAAGGTGGGTT+AGG + chr5_1:46607361-46607380 None:intergenic 45.0%
CATGGTTGATCTTCCAAGGT+GGG + chr5_1:46607366-46607385 None:intergenic 45.0%
ACATGGTTGATCTTCCAAGG+TGG + chr5_1:46607367-46607386 None:intergenic 45.0%
GTATCCGTTGGATCTTGACA+TGG - chr5_1:46607514-46607533 Msa0733370:intron 45.0%
GATGGTTGGATCACTGATGT+TGG + chr5_1:46607569-46607588 None:intergenic 45.0%
! ATTTTGGACCTCCCTCTTTG+TGG - chr5_1:46607639-46607658 Msa0733370:intron 45.0%
GTGGATGGAAGCAATTCCTT+TGG - chr5_1:46607658-46607677 Msa0733370:intron 45.0%
TCAAGACTGAAGATTGCGCT+GGG + chr5_1:46607689-46607708 None:intergenic 45.0%
TTCAAGACTGAAGATTGCGC+TGG + chr5_1:46607690-46607709 None:intergenic 45.0%
AACATAGGAAACAGGGGTGA+AGG + chr5_1:46607734-46607753 None:intergenic 45.0%
CAATTGCGGCCATGATATCA+AGG + chr5_1:46607960-46607979 None:intergenic 45.0%
AGAAGTTGTGGTCGGAAAGA+AGG + chr5_1:46608352-46608371 Msa0733390:intron 45.0%
! AAGGCTTCAGCTGAAGTACT+TGG + chr5_1:46608447-46608466 Msa0733390:intron 45.0%
!! GTGAAGTGTTGGAGCATGAA+AGG + chr5_1:46608527-46608546 Msa0733390:intron 45.0%
TATCGAGTAGTTGACGGAGA+AGG - chr5_1:46608744-46608763 Msa0733370:intron 45.0%
TTTCCTAGGCTGCTGTTGTT+TGG - chr5_1:46609128-46609147 Msa0733370:intron 45.0%
ATTCCAAACAACAGCAGCCT+AGG + chr5_1:46609134-46609153 Msa0733390:intron 45.0%
! TAGGCTGCTGTTGTTTGGAA+TGG - chr5_1:46609133-46609152 Msa0733370:intron 45.0%
GTCATAAGCATCCATCTTCC+GGG + chr5_1:46609176-46609195 Msa0733390:intron 45.0%
CCAGTTTGCACTTCATGGAT+TGG + chr5_1:46609227-46609246 Msa0733390:intron 45.0%
CCAATCCATGAAGTGCAAAC+TGG - chr5_1:46609224-46609243 Msa0733370:intron 45.0%
CAACTCCAGTTTGCACTTCA+TGG + chr5_1:46609232-46609251 Msa0733390:intron 45.0%
! AGTTTCAGTGTTTGGTTCCG+CGG + chr5_1:46609843-46609862 Msa0733390:CDS 45.0%
ACACATGCTTACCATGTAGC+AGG - chr5_1:46610008-46610027 Msa0733370:intron 45.0%
CACTTTAGTCTCCCATCAGA+TGG + chr5_1:46610145-46610164 Msa0733390:CDS 45.0%
TTTCAACTGCAACCAACCAG+TGG + chr5_1:46611224-46611243 Msa0733390:intron 45.0%
CAAGTTTGAGCAGCTTCTTG+TGG + chr5_1:46612175-46612194 Msa0733390:three_prime_UTR 45.0%
AGATAGATGGCTGAGGACAT+TGG + chr5_1:46612237-46612256 Msa0733390:three_prime_UTR 45.0%
GCACAAATGTCAATCCAGGT+AGG - chr5_1:46612474-46612493 Msa0733370:intron 45.0%
AAAGGATCTGTGATCCTACC+TGG + chr5_1:46612491-46612510 None:intergenic 45.0%
AGGTAGGATCACAGATCCTT+TGG - chr5_1:46612490-46612509 Msa0733370:intron 45.0%
! TCACAGATCCTTTGGTCTTC+AGG - chr5_1:46612498-46612517 Msa0733370:intron 45.0%
GGTGAGTCCTCAATCAATCA+AGG + chr5_1:46612556-46612575 None:intergenic 45.0%
AGTGCAAATATCACATCCCG+AGG - chr5_1:46612633-46612652 Msa0733370:exon 45.0%
! TGGTTTCTAGAGAATCACGG+TGG + chr5_1:46612718-46612737 None:intergenic 45.0%
! CGGTGGTTTCTAGAGAATCA+CGG + chr5_1:46612721-46612740 None:intergenic 45.0%
TTGGCCCTTGAAATCATTGG+TGG + chr5_1:46612844-46612863 None:intergenic 45.0%
CCATTGGCCCTTGAAATCAT+TGG + chr5_1:46612847-46612866 None:intergenic 45.0%
CCAATGATTTCAAGGGCCAA+TGG - chr5_1:46612844-46612863 Msa0733370:five_prime_UTR 45.0%
ATTCAGTGCTTGCTCACCAT+TGG + chr5_1:46612863-46612882 None:intergenic 45.0%
! TATGGTCTATGGAAGTGTGC+AGG + chr5_1:46613037-46613056 None:intergenic 45.0%
!!! ACAACCCTCTTGTTTTACCC+CGG - chr5_1:46613138-46613157 Msa0733370:intron 45.0%
TGCTATGCATAGTCGGTCAT+AGG + chr5_1:46613165-46613184 None:intergenic 45.0%
ATGACCGACTATGCATAGCA+AGG - chr5_1:46613165-46613184 Msa0733370:intron 45.0%
GAATGAGTGGACATACCCAA+AGG - chr5_1:46613714-46613733 Msa0733370:intron 45.0%
AGAGTCAAGATCGGAGTCTA+TGG + chr5_1:46614003-46614022 None:intergenic 45.0%
CGATCTTGACTCTGTTCTTG+TGG - chr5_1:46614010-46614029 Msa0733370:intron 45.0%
GAGGAGCTGTGAGTATTTGA+TGG + chr5_1:46614039-46614058 None:intergenic 45.0%
GCACTACATGCAAGTAGGAT+TGG + chr5_1:46614129-46614148 None:intergenic 45.0%
TGTAGTGCAGCACAAAGTGT+AGG - chr5_1:46614141-46614160 Msa0733370:intron 45.0%
CAGTTTGCACCTGAAAATCC+TGG + chr5_1:46614194-46614213 None:intergenic 45.0%
CATAACACTGAATGTGTGCG+TGG - chr5_1:46614395-46614414 Msa0733370:intron 45.0%
AACGAATCAGTCAACATCCG+CGG - chr5_1:46614587-46614606 Msa0733370:five_prime_UTR 45.0%
ACTTGGATAGAAGGCTTGGA+AGG + chr5_1:46614656-46614675 None:intergenic 45.0%
GCTTACTTGGATAGAAGGCT+TGG + chr5_1:46614660-46614679 None:intergenic 45.0%
GTGATTAGGGCTATGGCTTA+TGG + chr5_1:46614784-46614803 None:intergenic 45.0%
GGAGAATGTGATTAGGGCTA+TGG + chr5_1:46614791-46614810 None:intergenic 45.0%
AGTGCAATGGTAGCCATGTT+TGG + chr5_1:46615318-46615337 None:intergenic 45.0%
GCTACTTAGCATGAGTGCAA+TGG + chr5_1:46615331-46615350 None:intergenic 45.0%
ATGCAGGTTCTGCAGGTATT+GGG + chr5_1:46615371-46615390 None:intergenic 45.0%
AATGCAGGTTCTGCAGGTAT+TGG + chr5_1:46615372-46615391 None:intergenic 45.0%
!! TTAAAAATACTATAATTATA+GGG + chr5_1:46604897-46604916 Msa0733380:three_prime_UTR 5.0%
GCATGCTGCGTTACTCAAAC+CGG - chr5_1:46603815-46603834 Msa0733370:CDS 50.0%
! GAGGAAGTGTGATTGGTCGA+TGG + chr5_1:46604205-46604224 Msa0733380:CDS 50.0%
! AAACTTGGCGAAGGCGGATT+TGG - chr5_1:46604802-46604821 Msa0733370:intron 50.0%
TTGTCCGTGAATTCTGGCCA+AGG - chr5_1:46605163-46605182 Msa0733370:intron 50.0%
GAATAGTGGCACTCGTCATG+GGG - chr5_1:46605920-46605939 Msa0733370:intron 50.0%
TCGTCATGGGGAAATTACGG+AGG - chr5_1:46605932-46605951 Msa0733370:intron 50.0%
GCATGGAAAAGTTGGAGGGA+AGG - chr5_1:46606096-46606115 Msa0733370:intron 50.0%
GTCTTCCAGAAATGCGGTTG+TGG - chr5_1:46606325-46606344 Msa0733370:intron 50.0%
TCTTCCCACAACCGCATTTC+TGG + chr5_1:46606333-46606352 None:intergenic 50.0%
GCGGTTGTGGGAAGAGAATT+CGG - chr5_1:46606338-46606357 Msa0733370:intron 50.0%
CGGTTGTGGGAAGAGAATTC+GGG - chr5_1:46606339-46606358 Msa0733370:intron 50.0%
GGTTGTGGGAAGAGAATTCG+GGG - chr5_1:46606340-46606359 Msa0733370:intron 50.0%
CAAAGGTTGCAGAGTAGCCA+AGG + chr5_1:46606821-46606840 None:intergenic 50.0%
CTCGAATGCCCAGCATAACA+TGG - chr5_1:46606985-46607004 Msa0733370:intron 50.0%
CTCTTTCTCGCAGTTGTAGC+AGG - chr5_1:46607076-46607095 Msa0733370:intron 50.0%
! GACGGCTGAAGTTTTCGATG+AGG + chr5_1:46607318-46607337 None:intergenic 50.0%
AGTGGTTCACGAGGAATGGA+CGG + chr5_1:46607336-46607355 None:intergenic 50.0%
GAGCAACAGATGGAGGTTGT+TGG + chr5_1:46608324-46608343 Msa0733390:intron 50.0%
GAAGGAGTTCGAGCAACAGA+TGG + chr5_1:46608334-46608353 Msa0733390:intron 50.0%
GGAGGAAGGACTGACAATTG+TGG + chr5_1:46608388-46608407 Msa0733390:intron 50.0%
GTAGTTGACGGAGAAGGAGA+TGG - chr5_1:46608750-46608769 Msa0733370:intron 50.0%
AGCATCCATCTTCCGGGAAT+TGG + chr5_1:46609170-46609189 Msa0733390:intron 50.0%
!! TTCTCTGAGATGGACCAGTG+AGG - chr5_1:46610047-46610066 Msa0733370:intron 50.0%
AAGACTGTCAGATCGGTGCA+TGG - chr5_1:46611741-46611760 Msa0733370:intron 50.0%
AGACTGTCAGATCGGTGCAT+GGG - chr5_1:46611742-46611761 Msa0733370:intron 50.0%
GTCGATCAGATAGATGGCTG+AGG + chr5_1:46612244-46612263 Msa0733390:three_prime_UTR 50.0%
GAGGCGACTAAGTGTGTGTT+TGG - chr5_1:46612598-46612617 Msa0733370:CDS 50.0%
!!! CAACCCTCTTGTTTTACCCC+GGG - chr5_1:46613139-46613158 Msa0733370:intron 50.0%
AAAGGTGAAGTAGTTGCCGC+AGG + chr5_1:46613919-46613938 None:intergenic 50.0%
AAATACTCACAGCTCCTCGG+AGG - chr5_1:46614041-46614060 Msa0733370:intron 50.0%
AATACTCACAGCTCCTCGGA+GGG - chr5_1:46614042-46614061 Msa0733370:intron 50.0%
GTGCTGCACTACATGCAAGT+AGG + chr5_1:46614134-46614153 None:intergenic 50.0%
GGTGAAACTGAGAGACGGTA+TGG + chr5_1:46614229-46614248 None:intergenic 50.0%
!!! CTTGAGTTCGGAGGCACTTT+TGG + chr5_1:46614534-46614553 None:intergenic 50.0%
CTTTCCAGAAATGCGGCTGT+GGG - chr5_1:46615416-46615435 Msa0733370:five_prime_UTR 50.0%
AAGGCTTGGGTTTGGCACCT+TGG - chr5_1:46606801-46606820 Msa0733370:intron 55.0%
GGTCAGTGGTTCACGAGGAA+TGG + chr5_1:46607340-46607359 None:intergenic 55.0%
GGTTAGGTCAGTGGTTCACG+AGG + chr5_1:46607345-46607364 None:intergenic 55.0%
ACCACTGACCTAACCCACCT+TGG - chr5_1:46607350-46607369 Msa0733370:intron 55.0%
!! TCCAAGGTGGGTTAGGTCAG+TGG + chr5_1:46607354-46607373 None:intergenic 55.0%
!! TTCTGGAGCACGGTATCCGT+TGG - chr5_1:46607502-46607521 Msa0733370:intron 55.0%
TGGACCTCCCTCTTTGTGGA+TGG - chr5_1:46607643-46607662 Msa0733370:intron 55.0%
GCTTCCATCCACAAAGAGGG+AGG + chr5_1:46607650-46607669 None:intergenic 55.0%
ACAGTCCGCGACAGCAATTG+CGG + chr5_1:46607974-46607993 None:intergenic 55.0%
GGAGTTCGAGCAACAGATGG+AGG + chr5_1:46608331-46608350 Msa0733390:intron 55.0%
GACGGAGAAGGAGATGGAGA+AGG - chr5_1:46608756-46608775 Msa0733370:intron 55.0%
GACTGTCAGATCGGTGCATG+GGG - chr5_1:46611743-46611762 Msa0733370:intron 55.0%
TATCACATCCCGAGGCAAGC+TGG - chr5_1:46612641-46612660 Msa0733370:five_prime_UTR 55.0%
ATCACATCCCGAGGCAAGCT+GGG - chr5_1:46612642-46612661 Msa0733370:five_prime_UTR 55.0%
AGGCCCGGGGTAAAACAAGA+GGG + chr5_1:46613145-46613164 None:intergenic 55.0%
TAGGCCCGGGGTAAAACAAG+AGG + chr5_1:46613146-46613165 None:intergenic 55.0%
TGCATAGTCGGTCATAGGCC+CGG + chr5_1:46613160-46613179 None:intergenic 55.0%
TGAAGTAGTTGCCGCAGGTG+TGG + chr5_1:46613914-46613933 None:intergenic 55.0%
ATACTCACAGCTCCTCGGAG+GGG - chr5_1:46614043-46614062 Msa0733370:intron 55.0%
!! GGATGGTGGATGATTGTCCG+CGG + chr5_1:46614607-46614626 None:intergenic 55.0%
GCTTTCCAGAAATGCGGCTG+TGG - chr5_1:46615415-46615434 Msa0733370:five_prime_UTR 55.0%
TCTTCCCACAGCCGCATTTC+TGG + chr5_1:46615423-46615442 None:intergenic 55.0%
ATTGCGCTGGGAGCTGCCAA+AGG + chr5_1:46607677-46607696 None:intergenic 60.0%
CATGGCCGCAATTGCTGTCG+CGG - chr5_1:46607966-46607985 Msa0733370:intron 60.0%
TTTCCACGCCCAGCTTGCCT+CGG + chr5_1:46612653-46612672 None:intergenic 60.0%
CATAGTCGGTCATAGGCCCG+GGG + chr5_1:46613158-46613177 None:intergenic 60.0%
GCATAGTCGGTCATAGGCCC+GGG + chr5_1:46613159-46613178 None:intergenic 60.0%
CGCAGGTGTGGCATGATGCA+CGG + chr5_1:46613902-46613921 None:intergenic 60.0%
CGTGCATCATGCCACACCTG+CGG - chr5_1:46613900-46613919 Msa0733370:five_prime_UTR 60.0%
TTCCACGCCCAGCTTGCCTC+GGG + chr5_1:46612652-46612671 None:intergenic 65.0%
ATCCCGAGGCAAGCTGGGCG+TGG - chr5_1:46612647-46612666 Msa0733370:five_prime_UTR 70.0%
GCGGTTTCAGAGCCCCTCCG+AGG + chr5_1:46614058-46614077 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 46603632 46615509 46603632 ID=Msa0733370;Name=Msa0733370
chr5_1 mRNA 46603632 46615509 46603632 ID=Msa0733370-mRNA-1;Parent=Msa0733370;Name=Msa0733370-mRNA-1;_AED=0.31;_eAED=0.31;_QI=1864|0.8|0.66|1|0.2|0|6|0|134
chr5_1 exon 46603632 46603913 46603632 ID=Msa0733370-mRNA-1:exon:13311;Parent=Msa0733370-mRNA-1
chr5_1 exon 46612514 46613045 46612514 ID=Msa0733370-mRNA-1:exon:13310;Parent=Msa0733370-mRNA-1
chr5_1 exon 46613173 46613692 46613173 ID=Msa0733370-mRNA-1:exon:13309;Parent=Msa0733370-mRNA-1
chr5_1 exon 46613807 46614017 46613807 ID=Msa0733370-mRNA-1:exon:13308;Parent=Msa0733370-mRNA-1
chr5_1 exon 46614567 46614692 46614567 ID=Msa0733370-mRNA-1:exon:13307;Parent=Msa0733370-mRNA-1
chr5_1 exon 46614912 46615509 46614912 ID=Msa0733370-mRNA-1:exon:13306;Parent=Msa0733370-mRNA-1
chr5_1 five_prime_UTR 46614912 46615509 46614912 ID=Msa0733370-mRNA-1:five_prime_utr;Parent=Msa0733370-mRNA-1
chr5_1 five_prime_UTR 46614567 46614692 46614567 ID=Msa0733370-mRNA-1:five_prime_utr;Parent=Msa0733370-mRNA-1
chr5_1 five_prime_UTR 46613807 46614017 46613807 ID=Msa0733370-mRNA-1:five_prime_utr;Parent=Msa0733370-mRNA-1
chr5_1 five_prime_UTR 46613173 46613692 46613173 ID=Msa0733370-mRNA-1:five_prime_utr;Parent=Msa0733370-mRNA-1
chr5_1 five_prime_UTR 46612637 46613045 46612637 ID=Msa0733370-mRNA-1:five_prime_utr;Parent=Msa0733370-mRNA-1
chr5_1 CDS 46612514 46612636 46612514 ID=Msa0733370-mRNA-1:cds;Parent=Msa0733370-mRNA-1
chr5_1 CDS 46603632 46603913 46603632 ID=Msa0733370-mRNA-1:cds;Parent=Msa0733370-mRNA-1
Gene Sequence

>Msa0733370

ATGGAACTCATAATTTGTTCCTGCAAAGTCTTGCATAAACAGACTACATATCCTGTTTGTAATATAATTAGTATGGAGAACCTGTGTAACACATCATGGAAAGAATATATCATATATATGTCATGTTTGTTAAACAACAGTTCAAGAAATGAAATCATGAGATGCATTCATATTGGCTTACTATGTGTCCAAGACAATGTAGCTAAACGACCAAACATGGCTACCATTGCACTCATGCTAAGTAGCAGCTATTCTCTCACTCTCCCAATACCTGCAGAACCTGCATTTTTTATGGACAGTAGGGTTAGAAGCTTTCCAGAAATGCGGCTGTGGGAAGAGAACTCAAGTGAGTCCACAATTAAATCAGTAAACGAGGCTTCATTTACTGAGCCATATCCTCGTTAG
Protein sequence

>Msa0733370

MELIICSCKVLHKQTTYPVCNIISMENLCNTSWKEYIIYMSCLLNNSSRNEIMRCIHIGLLCVQDNVAKRPNMATIALMLSSSYSLTLPIPAEPAFFMDSRVRSFPEMRLWEENSSESTIKSVNEASFTEPYPR*