AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0596230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAATGGACACAAGAAATT+AGG 0.160765 4_2:+26036462 Msa0596230:three_prime_UTR
TATCCATCTCTCTGGGAATA+TGG 0.267448 4_2:-26036332 None:intergenic
ATGTTTCTGTTGTGGAATAA+TGG 0.331491 4_2:+26036233 Msa0596230:three_prime_UTR
TAAAGGAAACCATTCTGTTC+CGG 0.343976 4_2:-26036388 None:intergenic
TTCGCTTGCCATAGCCATTC+CGG 0.349664 4_2:-26036117 None:intergenic
AGAATGGACACAAGAAATTA+GGG 0.372630 4_2:+26036463 Msa0596230:three_prime_UTR
AAAGGAAACCATTCTGTTCC+GGG 0.388543 4_2:-26036387 None:intergenic
TGTTCAAATTGCTCCGGATC+TGG 0.412046 4_2:+26035369 Msa0596230:CDS
AGGTATCTTATCCATCTCTC+TGG 0.430753 4_2:-26036340 None:intergenic
GAGATAAAGATTGAAAGATC+TGG 0.445570 4_2:+26036303 Msa0596230:three_prime_UTR
AGGCTGATCTCCACCATTGA+AGG 0.461185 4_2:-26035322 None:intergenic
ATGTCCAACCTTGCCAGATC+CGG 0.468622 4_2:-26035382 None:intergenic
GGCAATTTGAAATTGTATGA+TGG 0.472443 4_2:+26036201 Msa0596230:three_prime_UTR
AGGAGGATACCGGTTCAATC+AGG 0.490296 4_2:-26035302 None:intergenic
CATAGTAATATGCAAAAGAA+AGG 0.500735 4_2:+26036281 Msa0596230:three_prime_UTR
GGAGCAATTTGAACATCTCT+CGG 0.515917 4_2:-26035361 None:intergenic
TGTGGTATATGTTTCTGTTG+TGG 0.520157 4_2:+26036225 Msa0596230:three_prime_UTR
ATATTAAACATCTAATCAAA+AGG 0.525443 4_2:-26036158 None:intergenic
TTCTTATAGATATTGTAAGT+AGG 0.529570 4_2:+26036180 Msa0596230:exon
GCAATTTGAAATTGTATGAT+GGG 0.533710 4_2:+26036202 Msa0596230:three_prime_UTR
TCTTTGCACCGGAATGGCTA+TGG 0.534453 4_2:+26036109 Msa0596230:CDS
CCACCATTGAAGGAGGATAC+CGG 0.540857 4_2:-26035312 None:intergenic
AGCACTTGTCCTGATTGAAC+CGG 0.540917 4_2:+26035293 Msa0596230:five_prime_UTR
GAACCGGTATCCTCCTTCAA+TGG 0.546734 4_2:+26035309 Msa0596230:exon
GAGAGATGTTCAAATTGCTC+CGG 0.560664 4_2:+26035363 Msa0596230:CDS
AACATGTCTTTGCACCGGAA+TGG 0.564128 4_2:+26036103 Msa0596230:CDS
TATCCATATTCCCAGAGAGA+TGG 0.569523 4_2:+26036329 Msa0596230:three_prime_UTR
AAATTGCTCCGGATCTGGCA+AGG 0.573161 4_2:+26035374 Msa0596230:CDS
GGTATCTTATCCATCTCTCT+GGG 0.574686 4_2:-26036339 None:intergenic
TAATCAAAAGGATCAATTCG+CGG 0.580042 4_2:-26036146 None:intergenic
TTGAAATTGTATGATGGGTG+TGG 0.585204 4_2:+26036207 Msa0596230:three_prime_UTR
TGATACCACCCGGAACAGAA+TGG 0.591352 4_2:+26036379 Msa0596230:three_prime_UTR
ATTCCGGTGCAAAGACATGT+TGG 0.592847 4_2:-26036101 None:intergenic
CCGGTATCCTCCTTCAATGG+TGG 0.599228 4_2:+26035312 Msa0596230:exon
TGTCCAACATGTCTTTGCAC+CGG 0.600830 4_2:+26036098 Msa0596230:CDS
CTGATCTCCACCATTGAAGG+AGG 0.622262 4_2:-26035319 None:intergenic
TGTTCCGGGTGGTATCAAGA+TGG 0.627932 4_2:-26036373 None:intergenic
AGTTCCATCTTGATACCACC+CGG 0.651553 4_2:+26036369 Msa0596230:three_prime_UTR
TGTGCTCGATGTTCAAACAC+GGG 0.651986 4_2:+26035270 Msa0596230:five_prime_UTR
ATGTGCTCGATGTTCAAACA+CGG 0.661742 4_2:+26035269 Msa0596230:five_prime_UTR
ATCAAGATGGAACTGAGTCG+AGG 0.668471 4_2:-26036360 None:intergenic
GGAAACCATTCTGTTCCGGG+TGG 0.736398 4_2:-26036384 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAATTTAAAAAGG+TGG + chr4_2:26035802-26035821 Msa0596230:intron 10.0%
!! ATAAAAAACTATGAAAAAAA+TGG - chr4_2:26035828-26035847 None:intergenic 10.0%
!! AAAAATTAAATTTAAAAAGG+TGG + chr4_2:26035802-26035821 Msa0596230:intron 10.0%
!! ATAAAAAACTATGAAAAAAA+TGG - chr4_2:26035828-26035847 None:intergenic 10.0%
!! AGTATTACTTATCTATATTA+TGG - chr4_2:26035465-26035484 None:intergenic 15.0%
!! TGAACTTTAAATTAAGTTAA+AGG - chr4_2:26035536-26035555 None:intergenic 15.0%
!! AATTATGGTTTACAATTTAA+TGG + chr4_2:26035739-26035758 Msa0596230:intron 15.0%
!! ATTATGGTTTACAATTTAAT+GGG + chr4_2:26035740-26035759 Msa0596230:intron 15.0%
!! ATATTAAACATCTAATCAAA+AGG - chr4_2:26036161-26036180 None:intergenic 15.0%
!! AGTATTACTTATCTATATTA+TGG - chr4_2:26035465-26035484 None:intergenic 15.0%
!! TGAACTTTAAATTAAGTTAA+AGG - chr4_2:26035536-26035555 None:intergenic 15.0%
!! AATTATGGTTTACAATTTAA+TGG + chr4_2:26035739-26035758 Msa0596230:intron 15.0%
!! ATTATGGTTTACAATTTAAT+GGG + chr4_2:26035740-26035759 Msa0596230:intron 15.0%
!! ATATTAAACATCTAATCAAA+AGG - chr4_2:26036161-26036180 None:intergenic 15.0%
!! ATTACTTATCTATATTATGG+CGG - chr4_2:26035462-26035481 None:intergenic 20.0%
!!! ATTTTCGTTTTGAAAGATAA+AGG - chr4_2:26035593-26035612 None:intergenic 20.0%
!! AGAAATGAATACAAGAATTA+TGG + chr4_2:26035724-26035743 Msa0596230:intron 20.0%
!! TTCTTATAGATATTGTAAGT+AGG + chr4_2:26036180-26036199 Msa0596230:exon 20.0%
!! CATTCAATTCTCAAAAATAA+AGG - chr4_2:26036408-26036427 None:intergenic 20.0%
!!! TTATTTTTGAGAATTGAATG+TGG + chr4_2:26036408-26036427 Msa0596230:three_prime_UTR 20.0%
!! ATTACTTATCTATATTATGG+CGG - chr4_2:26035462-26035481 None:intergenic 20.0%
!!! ATTTTCGTTTTGAAAGATAA+AGG - chr4_2:26035593-26035612 None:intergenic 20.0%
!! AGAAATGAATACAAGAATTA+TGG + chr4_2:26035724-26035743 Msa0596230:intron 20.0%
!! TTCTTATAGATATTGTAAGT+AGG + chr4_2:26036180-26036199 Msa0596230:exon 20.0%
!! CATTCAATTCTCAAAAATAA+AGG - chr4_2:26036408-26036427 None:intergenic 20.0%
!!! TTATTTTTGAGAATTGAATG+TGG + chr4_2:26036408-26036427 Msa0596230:three_prime_UTR 20.0%
! AAATTAAGTTAAAGGACTTC+TGG - chr4_2:26035528-26035547 None:intergenic 25.0%
!! ATTGCCCTTTTATGAAATTT+TGG + chr4_2:26035655-26035674 Msa0596230:intron 25.0%
! TTCATTTCTACTAGCTAAAA+TGG - chr4_2:26035713-26035732 None:intergenic 25.0%
! GTTACAATTATCATCATCAA+GGG - chr4_2:26035918-26035937 None:intergenic 25.0%
! AGTTACAATTATCATCATCA+AGG - chr4_2:26035919-26035938 None:intergenic 25.0%
! AAGATATAGACGATTAATCT+AGG - chr4_2:26035989-26036008 None:intergenic 25.0%
!! GCAATTTGAAATTGTATGAT+GGG + chr4_2:26036202-26036221 Msa0596230:three_prime_UTR 25.0%
! CATAGTAATATGCAAAAGAA+AGG + chr4_2:26036281-26036300 Msa0596230:three_prime_UTR 25.0%
! AAATTAAGTTAAAGGACTTC+TGG - chr4_2:26035528-26035547 None:intergenic 25.0%
!! ATTGCCCTTTTATGAAATTT+TGG + chr4_2:26035655-26035674 Msa0596230:intron 25.0%
! TTCATTTCTACTAGCTAAAA+TGG - chr4_2:26035713-26035732 None:intergenic 25.0%
! GTTACAATTATCATCATCAA+GGG - chr4_2:26035918-26035937 None:intergenic 25.0%
! AGTTACAATTATCATCATCA+AGG - chr4_2:26035919-26035938 None:intergenic 25.0%
! AAGATATAGACGATTAATCT+AGG - chr4_2:26035989-26036008 None:intergenic 25.0%
!! GCAATTTGAAATTGTATGAT+GGG + chr4_2:26036202-26036221 Msa0596230:three_prime_UTR 25.0%
! CATAGTAATATGCAAAAGAA+AGG + chr4_2:26036281-26036300 Msa0596230:three_prime_UTR 25.0%
! CATAAAAGGGCAATTTTTCA+CGG - chr4_2:26035649-26035668 None:intergenic 30.0%
GGCACCAAAATTTCATAAAA+GGG - chr4_2:26035662-26035681 None:intergenic 30.0%
TGGCACCAAAATTTCATAAA+AGG - chr4_2:26035663-26035682 None:intergenic 30.0%
GTATCTTCACTTCAGAATTA+TGG - chr4_2:26035778-26035797 None:intergenic 30.0%
TAGTCTATGTCTAGATAACA+TGG - chr4_2:26035953-26035972 None:intergenic 30.0%
TAGACATAGACTAATTAGCT+TGG + chr4_2:26035960-26035979 Msa0596230:intron 30.0%
TAATCAAAAGGATCAATTCG+CGG - chr4_2:26036149-26036168 None:intergenic 30.0%
! GGCAATTTGAAATTGTATGA+TGG + chr4_2:26036201-26036220 Msa0596230:three_prime_UTR 30.0%
! ATGTTTCTGTTGTGGAATAA+TGG + chr4_2:26036233-26036252 Msa0596230:three_prime_UTR 30.0%
GAGATAAAGATTGAAAGATC+TGG + chr4_2:26036303-26036322 Msa0596230:three_prime_UTR 30.0%
CCATTCTCAAAAAGTTATCA+TGG - chr4_2:26036450-26036469 None:intergenic 30.0%
!! CCATGATAACTTTTTGAGAA+TGG + chr4_2:26036447-26036466 Msa0596230:three_prime_UTR 30.0%
AGAATGGACACAAGAAATTA+GGG + chr4_2:26036463-26036482 Msa0596230:three_prime_UTR 30.0%
! CATAAAAGGGCAATTTTTCA+CGG - chr4_2:26035649-26035668 None:intergenic 30.0%
GGCACCAAAATTTCATAAAA+GGG - chr4_2:26035662-26035681 None:intergenic 30.0%
TGGCACCAAAATTTCATAAA+AGG - chr4_2:26035663-26035682 None:intergenic 30.0%
GTATCTTCACTTCAGAATTA+TGG - chr4_2:26035778-26035797 None:intergenic 30.0%
TAGTCTATGTCTAGATAACA+TGG - chr4_2:26035953-26035972 None:intergenic 30.0%
TAGACATAGACTAATTAGCT+TGG + chr4_2:26035960-26035979 Msa0596230:intron 30.0%
TAATCAAAAGGATCAATTCG+CGG - chr4_2:26036149-26036168 None:intergenic 30.0%
! GGCAATTTGAAATTGTATGA+TGG + chr4_2:26036201-26036220 Msa0596230:three_prime_UTR 30.0%
! ATGTTTCTGTTGTGGAATAA+TGG + chr4_2:26036233-26036252 Msa0596230:three_prime_UTR 30.0%
GAGATAAAGATTGAAAGATC+TGG + chr4_2:26036303-26036322 Msa0596230:three_prime_UTR 30.0%
CCATTCTCAAAAAGTTATCA+TGG - chr4_2:26036450-26036469 None:intergenic 30.0%
!! CCATGATAACTTTTTGAGAA+TGG + chr4_2:26036447-26036466 Msa0596230:three_prime_UTR 30.0%
AGAATGGACACAAGAAATTA+GGG + chr4_2:26036463-26036482 Msa0596230:three_prime_UTR 30.0%
! TTTGAACATCTCTCGGTTTT+TGG - chr4_2:26035357-26035376 None:intergenic 35.0%
TTTGGACTGAAGATCACTAA+AGG - chr4_2:26035625-26035644 None:intergenic 35.0%
!!! ATGAAATTTTGGTGCCATGT+TGG + chr4_2:26035666-26035685 Msa0596230:intron 35.0%
TATATCTTCGCATACCTTCT+GGG + chr4_2:26036001-26036020 Msa0596230:intron 35.0%
ATTATTGCTACAAACCCAGA+AGG - chr4_2:26036018-26036037 None:intergenic 35.0%
TGATACTGAATTCTGATTGC+AGG + chr4_2:26036070-26036089 Msa0596230:intron 35.0%
!! TTGAAATTGTATGATGGGTG+TGG + chr4_2:26036207-26036226 Msa0596230:three_prime_UTR 35.0%
! TGTGGTATATGTTTCTGTTG+TGG + chr4_2:26036225-26036244 Msa0596230:three_prime_UTR 35.0%
TAAAGGAAACCATTCTGTTC+CGG - chr4_2:26036391-26036410 None:intergenic 35.0%
GAGAATGGACACAAGAAATT+AGG + chr4_2:26036462-26036481 Msa0596230:three_prime_UTR 35.0%
! TTTGAACATCTCTCGGTTTT+TGG - chr4_2:26035357-26035376 None:intergenic 35.0%
TTTGGACTGAAGATCACTAA+AGG - chr4_2:26035625-26035644 None:intergenic 35.0%
!!! ATGAAATTTTGGTGCCATGT+TGG + chr4_2:26035666-26035685 Msa0596230:intron 35.0%
TATATCTTCGCATACCTTCT+GGG + chr4_2:26036001-26036020 Msa0596230:intron 35.0%
ATTATTGCTACAAACCCAGA+AGG - chr4_2:26036018-26036037 None:intergenic 35.0%
TGATACTGAATTCTGATTGC+AGG + chr4_2:26036070-26036089 Msa0596230:intron 35.0%
!! TTGAAATTGTATGATGGGTG+TGG + chr4_2:26036207-26036226 Msa0596230:three_prime_UTR 35.0%
! TGTGGTATATGTTTCTGTTG+TGG + chr4_2:26036225-26036244 Msa0596230:three_prime_UTR 35.0%
TAAAGGAAACCATTCTGTTC+CGG - chr4_2:26036391-26036410 None:intergenic 35.0%
GAGAATGGACACAAGAAATT+AGG + chr4_2:26036462-26036481 Msa0596230:three_prime_UTR 35.0%
ATGTGCTCGATGTTCAAACA+CGG + chr4_2:26035269-26035288 Msa0596230:five_prime_UTR 40.0%
!!! TCGGTTTTTGGTGGTGATAA+AGG - chr4_2:26035345-26035364 None:intergenic 40.0%
GGAGCAATTTGAACATCTCT+CGG - chr4_2:26035364-26035383 None:intergenic 40.0%
GAGAGATGTTCAAATTGCTC+CGG + chr4_2:26035363-26035382 Msa0596230:CDS 40.0%
! AGGGCAATTTTTCACGGTTT+TGG - chr4_2:26035643-26035662 None:intergenic 40.0%
CTTCCAAAATAAGGCCAACA+TGG - chr4_2:26035683-26035702 None:intergenic 40.0%
! GGCATCGAACTTCCAAAATA+AGG - chr4_2:26035692-26035711 None:intergenic 40.0%
ACTGTACCCAAGTGTTAGTA+AGG - chr4_2:26035875-26035894 None:intergenic 40.0%
ACTAACACTTGGGTACAGTT+TGG + chr4_2:26035876-26035895 Msa0596230:intron 40.0%
CTATATCTTCGCATACCTTC+TGG + chr4_2:26036000-26036019 Msa0596230:intron 40.0%
TATCCATATTCCCAGAGAGA+TGG + chr4_2:26036329-26036348 Msa0596230:three_prime_UTR 40.0%
! TATCCATCTCTCTGGGAATA+TGG - chr4_2:26036335-26036354 None:intergenic 40.0%
GGTATCTTATCCATCTCTCT+GGG - chr4_2:26036342-26036361 None:intergenic 40.0%
AGGTATCTTATCCATCTCTC+TGG - chr4_2:26036343-26036362 None:intergenic 40.0%
AAAGGAAACCATTCTGTTCC+GGG - chr4_2:26036390-26036409 None:intergenic 40.0%
ATGTGCTCGATGTTCAAACA+CGG + chr4_2:26035269-26035288 Msa0596230:five_prime_UTR 40.0%
!!! TCGGTTTTTGGTGGTGATAA+AGG - chr4_2:26035345-26035364 None:intergenic 40.0%
GGAGCAATTTGAACATCTCT+CGG - chr4_2:26035364-26035383 None:intergenic 40.0%
GAGAGATGTTCAAATTGCTC+CGG + chr4_2:26035363-26035382 Msa0596230:CDS 40.0%
! AGGGCAATTTTTCACGGTTT+TGG - chr4_2:26035643-26035662 None:intergenic 40.0%
CTTCCAAAATAAGGCCAACA+TGG - chr4_2:26035683-26035702 None:intergenic 40.0%
! GGCATCGAACTTCCAAAATA+AGG - chr4_2:26035692-26035711 None:intergenic 40.0%
ACTGTACCCAAGTGTTAGTA+AGG - chr4_2:26035875-26035894 None:intergenic 40.0%
ACTAACACTTGGGTACAGTT+TGG + chr4_2:26035876-26035895 Msa0596230:intron 40.0%
CTATATCTTCGCATACCTTC+TGG + chr4_2:26036000-26036019 Msa0596230:intron 40.0%
TATCCATATTCCCAGAGAGA+TGG + chr4_2:26036329-26036348 Msa0596230:three_prime_UTR 40.0%
! TATCCATCTCTCTGGGAATA+TGG - chr4_2:26036335-26036354 None:intergenic 40.0%
GGTATCTTATCCATCTCTCT+GGG - chr4_2:26036342-26036361 None:intergenic 40.0%
AGGTATCTTATCCATCTCTC+TGG - chr4_2:26036343-26036362 None:intergenic 40.0%
AAAGGAAACCATTCTGTTCC+GGG - chr4_2:26036390-26036409 None:intergenic 40.0%
TGTGCTCGATGTTCAAACAC+GGG + chr4_2:26035270-26035289 Msa0596230:five_prime_UTR 45.0%
AGCACTTGTCCTGATTGAAC+CGG + chr4_2:26035293-26035312 Msa0596230:five_prime_UTR 45.0%
!! GAACATCTCTCGGTTTTTGG+TGG - chr4_2:26035354-26035373 None:intergenic 45.0%
TGTTCAAATTGCTCCGGATC+TGG + chr4_2:26035369-26035388 Msa0596230:CDS 45.0%
!!! GTGCCATGTTGGCCTTATTT+TGG + chr4_2:26035677-26035696 Msa0596230:intron 45.0%
GCAGAGGTCTAACGACAAAA+AGG - chr4_2:26035853-26035872 None:intergenic 45.0%
ACCTCTGCCTTACTAACACT+TGG + chr4_2:26035865-26035884 Msa0596230:intron 45.0%
CCTCTGCCTTACTAACACTT+GGG + chr4_2:26035866-26035885 Msa0596230:intron 45.0%
TGTCCAACATGTCTTTGCAC+CGG + chr4_2:26036098-26036117 Msa0596230:CDS 45.0%
ATTCCGGTGCAAAGACATGT+TGG - chr4_2:26036104-26036123 None:intergenic 45.0%
AACATGTCTTTGCACCGGAA+TGG + chr4_2:26036103-26036122 Msa0596230:CDS 45.0%
ATCAAGATGGAACTGAGTCG+AGG - chr4_2:26036363-26036382 None:intergenic 45.0%
AGTTCCATCTTGATACCACC+CGG + chr4_2:26036369-26036388 Msa0596230:three_prime_UTR 45.0%
TGTGCTCGATGTTCAAACAC+GGG + chr4_2:26035270-26035289 Msa0596230:five_prime_UTR 45.0%
AGCACTTGTCCTGATTGAAC+CGG + chr4_2:26035293-26035312 Msa0596230:five_prime_UTR 45.0%
!! GAACATCTCTCGGTTTTTGG+TGG - chr4_2:26035354-26035373 None:intergenic 45.0%
TGTTCAAATTGCTCCGGATC+TGG + chr4_2:26035369-26035388 Msa0596230:CDS 45.0%
!!! GTGCCATGTTGGCCTTATTT+TGG + chr4_2:26035677-26035696 Msa0596230:intron 45.0%
GCAGAGGTCTAACGACAAAA+AGG - chr4_2:26035853-26035872 None:intergenic 45.0%
ACCTCTGCCTTACTAACACT+TGG + chr4_2:26035865-26035884 Msa0596230:intron 45.0%
CCTCTGCCTTACTAACACTT+GGG + chr4_2:26035866-26035885 Msa0596230:intron 45.0%
TGTCCAACATGTCTTTGCAC+CGG + chr4_2:26036098-26036117 Msa0596230:CDS 45.0%
ATTCCGGTGCAAAGACATGT+TGG - chr4_2:26036104-26036123 None:intergenic 45.0%
AACATGTCTTTGCACCGGAA+TGG + chr4_2:26036103-26036122 Msa0596230:CDS 45.0%
ATCAAGATGGAACTGAGTCG+AGG - chr4_2:26036363-26036382 None:intergenic 45.0%
AGTTCCATCTTGATACCACC+CGG + chr4_2:26036369-26036388 Msa0596230:three_prime_UTR 45.0%
!! ATGAAAAATTAAATTTAAAA+AGG + chr4_2:26035799-26035818 Msa0596230:intron 5.0%
!! ATGAAAAATTAAATTTAAAA+AGG + chr4_2:26035799-26035818 Msa0596230:intron 5.0%
!! AGGAGGATACCGGTTCAATC+AGG - chr4_2:26035305-26035324 None:intergenic 50.0%
GAACCGGTATCCTCCTTCAA+TGG + chr4_2:26035309-26035328 Msa0596230:exon 50.0%
CCACCATTGAAGGAGGATAC+CGG - chr4_2:26035315-26035334 None:intergenic 50.0%
CTGATCTCCACCATTGAAGG+AGG - chr4_2:26035322-26035341 None:intergenic 50.0%
AGGCTGATCTCCACCATTGA+AGG - chr4_2:26035325-26035344 None:intergenic 50.0%
AAATTGCTCCGGATCTGGCA+AGG + chr4_2:26035374-26035393 Msa0596230:CDS 50.0%
ATGTCCAACCTTGCCAGATC+CGG - chr4_2:26035385-26035404 None:intergenic 50.0%
CCCAAGTGTTAGTAAGGCAG+AGG - chr4_2:26035869-26035888 None:intergenic 50.0%
TCAAGGGAACAATGCTGACG+TGG - chr4_2:26035902-26035921 None:intergenic 50.0%
TCTTTGCACCGGAATGGCTA+TGG + chr4_2:26036109-26036128 Msa0596230:CDS 50.0%
TTCGCTTGCCATAGCCATTC+CGG - chr4_2:26036120-26036139 None:intergenic 50.0%
TGTTCCGGGTGGTATCAAGA+TGG - chr4_2:26036376-26036395 None:intergenic 50.0%
TGATACCACCCGGAACAGAA+TGG + chr4_2:26036379-26036398 Msa0596230:three_prime_UTR 50.0%
!! AGGAGGATACCGGTTCAATC+AGG - chr4_2:26035305-26035324 None:intergenic 50.0%
GAACCGGTATCCTCCTTCAA+TGG + chr4_2:26035309-26035328 Msa0596230:exon 50.0%
CCACCATTGAAGGAGGATAC+CGG - chr4_2:26035315-26035334 None:intergenic 50.0%
CTGATCTCCACCATTGAAGG+AGG - chr4_2:26035322-26035341 None:intergenic 50.0%
AGGCTGATCTCCACCATTGA+AGG - chr4_2:26035325-26035344 None:intergenic 50.0%
AAATTGCTCCGGATCTGGCA+AGG + chr4_2:26035374-26035393 Msa0596230:CDS 50.0%
ATGTCCAACCTTGCCAGATC+CGG - chr4_2:26035385-26035404 None:intergenic 50.0%
CCCAAGTGTTAGTAAGGCAG+AGG - chr4_2:26035869-26035888 None:intergenic 50.0%
TCAAGGGAACAATGCTGACG+TGG - chr4_2:26035902-26035921 None:intergenic 50.0%
TCTTTGCACCGGAATGGCTA+TGG + chr4_2:26036109-26036128 Msa0596230:CDS 50.0%
TTCGCTTGCCATAGCCATTC+CGG - chr4_2:26036120-26036139 None:intergenic 50.0%
TGTTCCGGGTGGTATCAAGA+TGG - chr4_2:26036376-26036395 None:intergenic 50.0%
TGATACCACCCGGAACAGAA+TGG + chr4_2:26036379-26036398 Msa0596230:three_prime_UTR 50.0%
CCGGTATCCTCCTTCAATGG+TGG + chr4_2:26035312-26035331 Msa0596230:exon 55.0%
GGAAACCATTCTGTTCCGGG+TGG - chr4_2:26036387-26036406 None:intergenic 55.0%
CCGGTATCCTCCTTCAATGG+TGG + chr4_2:26035312-26035331 Msa0596230:exon 55.0%
GGAAACCATTCTGTTCCGGG+TGG - chr4_2:26036387-26036406 None:intergenic 55.0%
TGCTCCGGATCTGGCAAGGT+TGG + chr4_2:26035378-26035397 Msa0596230:intron 60.0%
TGCTCCGGATCTGGCAAGGT+TGG + chr4_2:26035378-26035397 Msa0596230:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 26035259 26036503 26035259 ID=Msa0596230;Name=Msa0596230
chr4_2 mRNA 26035259 26036503 26035259 ID=Msa0596230-mRNA-1;Parent=Msa0596230;Name=Msa0596230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=69|1|0.5|1|1|1|2|315|54
chr4_2 exon 26035259 26035395 26035259 ID=Msa0596230-mRNA-1:exon:7023;Parent=Msa0596230-mRNA-1
chr4_2 exon 26036092 26036503 26036092 ID=Msa0596230-mRNA-1:exon:7024;Parent=Msa0596230-mRNA-1
chr4_2 five_prime_UTR 26035259 26035327 26035259 ID=Msa0596230-mRNA-1:five_prime_utr;Parent=Msa0596230-mRNA-1
chr4_2 CDS 26035328 26035395 26035328 ID=Msa0596230-mRNA-1:cds;Parent=Msa0596230-mRNA-1
chr4_2 CDS 26036092 26036188 26036092 ID=Msa0596230-mRNA-1:cds;Parent=Msa0596230-mRNA-1
chr4_2 three_prime_UTR 26036189 26036503 26036189 ID=Msa0596230-mRNA-1:three_prime_utr;Parent=Msa0596230-mRNA-1
Gene Sequence

>Msa0596230

ATGGTGGAGATCAGCCTTTATCACCACCAAAAACCGAGAGATGTTCAAATTGCTCCGGATCTGGCAAGGTCATGTGTCCAACATGTCTTTGCACCGGAATGGCTATGGCAAGCGAACATGATCCGCGAATTGATCCTTTTGATTAGATGTTTAATATTCTTATAG
Protein sequence

>Msa0596230

MVEISLYHHQKPRDVQIAPDLARSCVQHVFAPEWLWQANMIRELILLIRCLIFL*