Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380490 | XP_003608741.1 | 95.455 | 132 | 5 | 1 | 1 | 131 | 1 | 132 | 4.86e-82 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380490 | sp|P14009|14KD_DAUCA | 59.091 | 132 | 50 | 3 | 2 | 130 | 6 | 136 | 1.63e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380490 | G7JIZ5 | 95.455 | 132 | 5 | 1 | 1 | 131 | 1 | 132 | 2.32e-82 | 246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa1380490 | 0.808557 | 2.920628e-50 | -8.615850e-47 |
| Msa0006700 | Msa1380490 | -0.813174 | 2.925268e-51 | -8.615850e-47 |
| Msa0012780 | Msa1380490 | 0.816433 | 5.545059e-52 | -8.615850e-47 |
| Msa0012820 | Msa1380490 | 0.863767 | 1.967168e-64 | -8.615850e-47 |
| Msa0036230 | Msa1380490 | 0.858305 | 9.027504e-63 | -8.615850e-47 |
| Msa0036580 | Msa1380490 | 0.843081 | 1.744201e-58 | -8.615850e-47 |
| Msa0045850 | Msa1380490 | 0.805259 | 1.454971e-49 | -8.615850e-47 |
| Msa0048950 | Msa1380490 | 0.859076 | 5.312680e-63 | -8.615850e-47 |
| Msa0051100 | Msa1380490 | -0.804550 | 2.046942e-49 | -8.615850e-47 |
| Msa0059880 | Msa1380490 | 0.824026 | 1.008683e-53 | -8.615850e-47 |
| Msa0061590 | Msa1380490 | 0.814376 | 1.590409e-51 | -8.615850e-47 |
| Msa0061600 | Msa1380490 | 0.874884 | 4.763141e-68 | -8.615850e-47 |
| Msa0072030 | Msa1380490 | 0.824003 | 1.021568e-53 | -8.615850e-47 |
| Msa0084150 | Msa1380490 | 0.801096 | 1.057753e-48 | -8.615850e-47 |
| Msa0084160 | Msa1380490 | 0.847046 | 1.481484e-59 | -8.615850e-47 |
| Msa0089080 | Msa1380490 | 0.806477 | 8.069837e-50 | -8.615850e-47 |
| Msa0106110 | Msa1380490 | 0.806644 | 7.442214e-50 | -8.615850e-47 |
| Msa0106120 | Msa1380490 | 0.837175 | 6.067912e-57 | -8.615850e-47 |
| Msa0106130 | Msa1380490 | 0.878942 | 1.866246e-69 | -8.615850e-47 |
| Msa1350490 | Msa1380490 | 0.838462 | 2.834924e-57 | -8.615850e-47 |
| Msa1357490 | Msa1380490 | 0.878100 | 3.689209e-69 | -8.615850e-47 |
| Msa1361190 | Msa1380490 | -0.805008 | 1.642273e-49 | -8.615850e-47 |
| Msa1363690 | Msa1380490 | 0.806877 | 6.643806e-50 | -8.615850e-47 |
| Msa1370930 | Msa1380490 | 0.867675 | 1.148587e-65 | -8.615850e-47 |
| Msa1376070 | Msa1380490 | 0.816631 | 5.005617e-52 | -8.615850e-47 |
| Msa1377520 | Msa1380490 | 0.803589 | 3.243667e-49 | -8.615850e-47 |
| Msa1378400 | Msa1380490 | 0.822688 | 2.072311e-53 | -8.615850e-47 |
| Msa1380490 | Msa1382180 | 0.818801 | 1.621224e-52 | -8.615850e-47 |
| Msa1380490 | Msa1386260 | 0.813909 | 2.016118e-51 | -8.615850e-47 |
| Msa1380490 | Msa1393440 | 0.877532 | 5.828886e-69 | -8.615850e-47 |
| Msa1380490 | Msa1395690 | 0.844176 | 8.890054e-59 | -8.615850e-47 |
| Msa1380490 | Msa1396550 | 0.819741 | 9.904955e-53 | -8.615850e-47 |
| Msa1380490 | Msa1407210 | 0.815656 | 8.267152e-52 | -8.615850e-47 |
| Msa1380490 | Msa1407670 | 0.836129 | 1.121028e-56 | -8.615850e-47 |
| Msa1380490 | Msa1417950 | 0.819746 | 9.878775e-53 | -8.615850e-47 |
| Msa1380490 | Msa1420020 | 0.836822 | 7.470493e-57 | -8.615850e-47 |
| Msa1380490 | Msa1421120 | 0.834417 | 3.033198e-56 | -8.615850e-47 |
| Msa1380490 | Msa1426420 | 0.879647 | 1.050863e-69 | -8.615850e-47 |
| Msa1380490 | Msa1445900 | 0.827498 | 1.513401e-54 | -8.615850e-47 |
| Msa1380490 | Msa1447900 | 0.812688 | 3.737925e-51 | -8.615850e-47 |
| Msa1380490 | Msa1449770 | 0.830925 | 2.231815e-55 | -8.615850e-47 |
| Msa1380490 | Msa1452920 | 0.818904 | 1.536207e-52 | -8.615850e-47 |
| Msa1380490 | Msa1459610 | 0.829038 | 6.434791e-55 | -8.615850e-47 |
| Msa1380490 | Msa1460310 | 0.842442 | 2.579782e-58 | -8.615850e-47 |
| Msa0603950 | Msa1380490 | 0.841782 | 3.856500e-58 | -8.615850e-47 |
| Msa0605460 | Msa1380490 | 0.848625 | 5.439073e-60 | -8.615850e-47 |
| Msa0605470 | Msa1380490 | 0.819434 | 1.163562e-52 | -8.615850e-47 |
| Msa0620640 | Msa1380490 | -0.803957 | 2.720641e-49 | -8.615850e-47 |
| Msa0640290 | Msa1380490 | 0.819835 | 9.425908e-53 | -8.615850e-47 |
| Msa0643020 | Msa1380490 | 0.823234 | 1.546054e-53 | -8.615850e-47 |
| Msa0645100 | Msa1380490 | 0.841878 | 3.636492e-58 | -8.615850e-47 |
| Msa0645120 | Msa1380490 | 0.822228 | 2.650608e-53 | -8.615850e-47 |
| Msa0646040 | Msa1380490 | 0.847315 | 1.250301e-59 | -8.615850e-47 |
| Msa0670220 | Msa1380490 | 0.847526 | 1.094037e-59 | -8.615850e-47 |
| Msa0670360 | Msa1380490 | 0.801356 | 9.360222e-49 | -8.615850e-47 |
| Msa0676190 | Msa1380490 | 0.802886 | 4.534525e-49 | -8.615850e-47 |
| Msa0678620 | Msa1380490 | 0.822026 | 2.952790e-53 | -8.615850e-47 |
| Msa0682730 | Msa1380490 | 0.830928 | 2.227720e-55 | -8.615850e-47 |
| Msa0684590 | Msa1380490 | 0.845765 | 3.311338e-59 | -8.615850e-47 |
| Msa0684600 | Msa1380490 | 0.853128 | 2.931764e-61 | -8.615850e-47 |
| Msa0684720 | Msa1380490 | 0.866386 | 2.960619e-65 | -8.615850e-47 |
| Msa0715510 | Msa1380490 | 0.819618 | 1.056697e-52 | -8.615850e-47 |
| Msa0727480 | Msa1380490 | 0.810277 | 1.248688e-50 | -8.615850e-47 |
| Msa0728610 | Msa1380490 | 0.802329 | 5.907933e-49 | -8.615850e-47 |
| Msa0735280 | Msa1380490 | 0.846044 | 2.781544e-59 | -8.615850e-47 |
| Msa0746090 | Msa1380490 | 0.833227 | 6.020897e-56 | -8.615850e-47 |
| Msa0768720 | Msa1380490 | 0.800509 | 1.393998e-48 | -8.615850e-47 |
| Msa0774810 | Msa1380490 | 0.803533 | 3.331018e-49 | -8.615850e-47 |
| Msa0777250 | Msa1380490 | 0.831109 | 2.010574e-55 | -8.615850e-47 |
| Msa0791300 | Msa1380490 | 0.821264 | 4.429221e-53 | -8.615850e-47 |
| Msa0796430 | Msa1380490 | 0.851741 | 7.282824e-61 | -8.615850e-47 |
| Msa0811000 | Msa1380490 | -0.803344 | 3.645356e-49 | -8.615850e-47 |
| Msa0814230 | Msa1380490 | 0.814922 | 1.203907e-51 | -8.615850e-47 |
| Msa0834270 | Msa1380490 | 0.852805 | 3.627015e-61 | -8.615850e-47 |
| Msa0135890 | Msa1380490 | 0.814647 | 1.384817e-51 | -8.615850e-47 |
| Msa0139270 | Msa1380490 | 0.831260 | 1.846425e-55 | -8.615850e-47 |
| Msa0139460 | Msa1380490 | 0.812836 | 3.468937e-51 | -8.615850e-47 |
| Msa0139720 | Msa1380490 | 0.855657 | 5.445367e-62 | -8.615850e-47 |
| Msa0147670 | Msa1380490 | 0.828463 | 8.865461e-55 | -8.615850e-47 |
| Msa0152740 | Msa1380490 | 0.835560 | 1.562786e-56 | -8.615850e-47 |
| Msa0163340 | Msa1380490 | 0.801067 | 1.072182e-48 | -8.615850e-47 |
| Msa0163370 | Msa1380490 | 0.809318 | 2.007901e-50 | -8.615850e-47 |
| Msa0176620 | Msa1380490 | 0.847782 | 9.302647e-60 | -8.615850e-47 |
| Msa0197750 | Msa1380490 | 0.874477 | 6.551501e-68 | -8.615850e-47 |
| Msa0219210 | Msa1380490 | 0.834659 | 2.636925e-56 | -8.615850e-47 |
| Msa0232860 | Msa1380490 | -0.815951 | 7.104258e-52 | -8.615850e-47 |
| Msa0236610 | Msa1380490 | 0.808676 | 2.755150e-50 | -8.615850e-47 |
| Msa1237260 | Msa1380490 | -0.819269 | 1.269273e-52 | -8.615850e-47 |
| Msa1266710 | Msa1380490 | 0.804123 | 2.512540e-49 | -8.615850e-47 |
| Msa1269050 | Msa1380490 | 0.837880 | 4.003266e-57 | -8.615850e-47 |
| Msa1281130 | Msa1380490 | 0.802371 | 5.791118e-49 | -8.615850e-47 |
| Msa1282210 | Msa1380490 | -0.801737 | 7.818934e-49 | -8.615850e-47 |
| Msa1296870 | Msa1380490 | 0.831163 | 1.950907e-55 | -8.615850e-47 |
| Msa1298290 | Msa1380490 | -0.802163 | 6.390466e-49 | -8.615850e-47 |
| Msa1300610 | Msa1380490 | 0.810393 | 1.178742e-50 | -8.615850e-47 |
| Msa1306200 | Msa1380490 | -0.826709 | 2.337023e-54 | -8.615850e-47 |
| Msa1314710 | Msa1380490 | 0.842412 | 2.627371e-58 | -8.615850e-47 |
| Msa1317710 | Msa1380490 | -0.802945 | 4.408583e-49 | -8.615850e-47 |
| Msa1320330 | Msa1380490 | 0.811220 | 7.807304e-51 | -8.615850e-47 |
| Msa1320530 | Msa1380490 | 0.803988 | 2.679807e-49 | -8.615850e-47 |
| Msa1323030 | Msa1380490 | 0.826805 | 2.217740e-54 | -8.615850e-47 |
| Msa1323120 | Msa1380490 | 0.800167 | 1.636608e-48 | -8.615850e-47 |
| Msa1323160 | Msa1380490 | 0.882819 | 7.566088e-71 | -8.615850e-47 |
| Msa1329740 | Msa1380490 | 0.807850 | 4.132288e-50 | -8.615850e-47 |
| Msa1335970 | Msa1380490 | 0.818409 | 1.989848e-52 | -8.615850e-47 |
| Msa1339490 | Msa1380490 | 0.805147 | 1.535892e-49 | -8.615850e-47 |
| Msa0374130 | Msa1380490 | 0.829862 | 4.058237e-55 | -8.615850e-47 |
| Msa0389050 | Msa1380490 | -0.810240 | 1.272072e-50 | -8.615850e-47 |
| Msa0389060 | Msa1380490 | -0.811276 | 7.591804e-51 | -8.615850e-47 |
| Msa0393900 | Msa1380490 | 0.809291 | 2.034421e-50 | -8.615850e-47 |
| Msa0423680 | Msa1380490 | 0.820120 | 8.112074e-53 | -8.615850e-47 |
| Msa0459120 | Msa1380490 | -0.808099 | 3.658289e-50 | -8.615850e-47 |
| Msa0469550 | Msa1380490 | 0.884489 | 1.835983e-71 | -8.615850e-47 |
| Msa0470370 | Msa1380490 | 0.813455 | 2.537513e-51 | -8.615850e-47 |
| Msa0985290 | Msa1380490 | 0.805599 | 1.234950e-49 | -8.615850e-47 |
| Msa0985700 | Msa1380490 | 0.863030 | 3.330136e-64 | -8.615850e-47 |
| Msa1006940 | Msa1380490 | 0.869047 | 4.147359e-66 | -8.615850e-47 |
| Msa1011320 | Msa1380490 | 0.804127 | 2.507772e-49 | -8.615850e-47 |
| Msa1021620 | Msa1380490 | 0.831661 | 1.470608e-55 | -8.615850e-47 |
| Msa1036250 | Msa1380490 | -0.801414 | 9.106150e-49 | -8.615850e-47 |
| Msa1040730 | Msa1380490 | 0.830622 | 2.648112e-55 | -8.615850e-47 |
| Msa1053990 | Msa1380490 | 0.810006 | 1.428348e-50 | -8.615850e-47 |
| Msa1061670 | Msa1380490 | 0.803953 | 2.725943e-49 | -8.615850e-47 |
| Msa1076830 | Msa1380490 | 0.807693 | 4.462002e-50 | -8.615850e-47 |
| Msa1100560 | Msa1380490 | 0.830340 | 3.102907e-55 | -8.615850e-47 |
| Msa0241410 | Msa1380490 | 0.816561 | 5.190602e-52 | -8.615850e-47 |
| Msa0264940 | Msa1380490 | 0.842553 | 2.409909e-58 | -8.615850e-47 |
| Msa0266740 | Msa1380490 | 0.805100 | 1.571477e-49 | -8.615850e-47 |
| Msa0277280 | Msa1380490 | 0.865606 | 5.227255e-65 | -8.615850e-47 |
| Msa0295980 | Msa1380490 | 0.804747 | 1.862510e-49 | -8.615850e-47 |
| Msa0297650 | Msa1380490 | 0.818115 | 2.319289e-52 | -8.615850e-47 |
| Msa0298270 | Msa1380490 | 0.840575 | 8.007637e-58 | -8.615850e-47 |
| Msa0302990 | Msa1380490 | 0.842162 | 3.059199e-58 | -8.615850e-47 |
| Msa0315300 | Msa1380490 | 0.819519 | 1.113129e-52 | -8.615850e-47 |
| Msa0333940 | Msa1380490 | 0.807744 | 4.351577e-50 | -8.615850e-47 |
| Msa0334050 | Msa1380490 | 0.818925 | 1.519525e-52 | -8.615850e-47 |
| Msa0336630 | Msa1380490 | 0.820176 | 7.877266e-53 | -8.615850e-47 |
| Msa1109890 | Msa1380490 | 0.840356 | 9.134859e-58 | -8.615850e-47 |
| Msa1112730 | Msa1380490 | 0.838891 | 2.196387e-57 | -8.615850e-47 |
| Msa1132560 | Msa1380490 | 0.856279 | 3.581577e-62 | -8.615850e-47 |
| Msa1136060 | Msa1380490 | 0.840542 | 8.169512e-58 | -8.615850e-47 |
| Msa1141250 | Msa1380490 | 0.815482 | 9.040019e-52 | -8.615850e-47 |
| Msa1142860 | Msa1380490 | 0.811985 | 5.323665e-51 | -8.615850e-47 |
| Msa1143240 | Msa1380490 | 0.802516 | 5.407354e-49 | -8.615850e-47 |
| Msa1149020 | Msa1380490 | 0.809133 | 2.200116e-50 | -8.615850e-47 |
| Msa1182800 | Msa1380490 | -0.819886 | 9.176594e-53 | -8.615850e-47 |
| Msa1182830 | Msa1380490 | -0.835852 | 1.318486e-56 | -8.615850e-47 |
| Msa1207480 | Msa1380490 | 0.877917 | 4.276732e-69 | -8.615850e-47 |
| Msa1211390 | Msa1380490 | -0.834323 | 3.202450e-56 | -8.615850e-47 |
| Msa1216600 | Msa1380490 | 0.854071 | 1.570881e-61 | -8.615850e-47 |
| Msa1219780 | Msa1380490 | 0.814177 | 1.759541e-51 | -8.615850e-47 |
| Msa1222030 | Msa1380490 | 0.825369 | 4.867060e-54 | -8.615850e-47 |
| Msa0491760 | Msa1380490 | 0.834593 | 2.740853e-56 | -8.615850e-47 |
| Msa0505660 | Msa1380490 | -0.802798 | 4.727942e-49 | -8.615850e-47 |
| Msa0515260 | Msa1380490 | 0.887064 | 1.980596e-72 | -8.615850e-47 |
| Msa0548760 | Msa1380490 | 0.842198 | 2.993077e-58 | -8.615850e-47 |
| Msa0548770 | Msa1380490 | 0.805553 | 1.262662e-49 | -8.615850e-47 |
| Msa0548970 | Msa1380490 | 0.861849 | 7.681068e-64 | -8.615850e-47 |
| Msa0568610 | Msa1380490 | -0.804529 | 2.067657e-49 | -8.615850e-47 |
| Msa0587920 | Msa1380490 | 0.804223 | 2.395359e-49 | -8.615850e-47 |
| Msa0599600 | Msa1380490 | 0.822818 | 1.932529e-53 | -8.615850e-47 |
| Msa0601920 | Msa1380490 | 0.826047 | 3.360862e-54 | -8.615850e-47 |
| Msa0862020 | Msa1380490 | -0.801997 | 6.912408e-49 | -8.615850e-47 |
| Msa0883640 | Msa1380490 | 0.863442 | 2.482217e-64 | -8.615850e-47 |
| Msa0910830 | Msa1380490 | 0.859548 | 3.832460e-63 | -8.615850e-47 |
| Msa0913550 | Msa1380490 | 0.821019 | 5.043896e-53 | -8.615850e-47 |
| Msa0948050 | Msa1380490 | 0.802464 | 5.541562e-49 | -8.615850e-47 |
| Msa0960090 | Msa1380490 | 0.864183 | 1.460239e-64 | -8.615850e-47 |
| Msa0967820 | Msa1380490 | 0.813615 | 2.340338e-51 | -8.615850e-47 |
| Msa0971880 | Msa1380490 | 0.829640 | 4.597666e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380490 | MtrunA17_Chr4g0056371 | 95.455 | 132 | 5 | 1 | 1 | 131 | 1 | 132 | 4.47e-86 | 246 |
| Msa1380490 | MtrunA17_Chr4g0060391 | 92.366 | 131 | 2 | 1 | 1 | 131 | 1 | 123 | 7.71e-81 | 233 |
| Msa1380490 | MtrunA17_Chr2g0290521 | 54.688 | 128 | 52 | 3 | 4 | 131 | 6 | 127 | 2.78e-38 | 125 |
| Msa1380490 | MtrunA17_Chr4g0056391 | 54.015 | 137 | 55 | 2 | 3 | 131 | 7 | 143 | 7.15e-38 | 125 |
| Msa1380490 | MtrunA17_Chr4g0056411 | 47.853 | 163 | 49 | 3 | 3 | 130 | 7 | 168 | 2.80e-37 | 124 |
| Msa1380490 | MtrunA17_Chr1g0149481 | 55.833 | 120 | 39 | 3 | 26 | 131 | 45 | 164 | 3.53e-36 | 121 |
| Msa1380490 | MtrunA17_Chr1g0149491 | 63.855 | 83 | 30 | 0 | 49 | 131 | 69 | 151 | 2.75e-34 | 116 |
| Msa1380490 | MtrunA17_Chr1g0149471 | 66.265 | 83 | 28 | 0 | 49 | 131 | 128 | 210 | 4.23e-34 | 117 |
| Msa1380490 | MtrunA17_Chr3g0137521 | 68.675 | 83 | 25 | 1 | 49 | 130 | 47 | 129 | 7.06e-34 | 114 |
| Msa1380490 | MtrunA17_Chr4g0056401 | 45.802 | 131 | 68 | 2 | 2 | 131 | 6 | 134 | 7.72e-30 | 104 |
| Msa1380490 | MtrunA17_Chr3g0137531 | 60.714 | 84 | 32 | 1 | 49 | 131 | 46 | 129 | 2.88e-24 | 90.5 |
| Msa1380490 | MtrunA17_Chr4g0056381 | 53.571 | 84 | 37 | 2 | 48 | 130 | 104 | 186 | 2.71e-21 | 84.3 |
| Msa1380490 | MtrunA17_Chr5g0399081 | 40.000 | 105 | 45 | 3 | 43 | 130 | 73 | 176 | 6.22e-20 | 80.5 |
| Msa1380490 | MtrunA17_Chr2g0290571 | 46.835 | 79 | 40 | 1 | 52 | 130 | 122 | 198 | 2.16e-17 | 74.3 |
| Msa1380490 | MtrunA17_Chr2g0290561 | 46.835 | 79 | 40 | 1 | 52 | 130 | 118 | 194 | 1.59e-16 | 72.0 |
| Msa1380490 | MtrunA17_Chr2g0290531 | 46.053 | 76 | 36 | 2 | 58 | 131 | 188 | 260 | 1.47e-15 | 70.5 |
| Msa1380490 | MtrunA17_Chr3g0120411 | 42.857 | 84 | 46 | 2 | 48 | 130 | 253 | 335 | 9.46e-13 | 63.5 |
| Msa1380490 | MtrunA17_Chr4g0064361 | 48.235 | 85 | 42 | 2 | 48 | 131 | 150 | 233 | 4.67e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380490 | AT2G45180.1 | 62.222 | 135 | 46 | 2 | 1 | 131 | 1 | 134 | 4.52e-47 | 148 |
| Msa1380490 | AT5G46890.1 | 64.341 | 129 | 41 | 4 | 3 | 131 | 4 | 127 | 3.96e-42 | 135 |
| Msa1380490 | AT4G12520.1 | 52.941 | 136 | 52 | 3 | 1 | 131 | 1 | 129 | 1.88e-38 | 126 |
| Msa1380490 | AT4G12510.1 | 52.941 | 136 | 52 | 3 | 1 | 131 | 1 | 129 | 1.88e-38 | 126 |
| Msa1380490 | AT5G46900.1 | 62.791 | 129 | 43 | 3 | 3 | 131 | 4 | 127 | 4.43e-38 | 125 |
| Msa1380490 | AT1G62510.1 | 73.494 | 83 | 21 | 1 | 49 | 130 | 67 | 149 | 1.38e-36 | 122 |
| Msa1380490 | AT4G00165.1 | 52.846 | 123 | 43 | 3 | 12 | 130 | 17 | 128 | 3.72e-36 | 120 |
| Msa1380490 | AT4G00165.2 | 52.846 | 123 | 43 | 3 | 12 | 130 | 17 | 128 | 3.72e-36 | 120 |
| Msa1380490 | AT4G12480.1 | 40.476 | 168 | 63 | 3 | 1 | 131 | 1 | 168 | 6.60e-34 | 116 |
| Msa1380490 | AT4G12490.1 | 41.530 | 183 | 54 | 4 | 1 | 131 | 1 | 182 | 9.08e-34 | 116 |
| Msa1380490 | AT4G12550.1 | 49.219 | 128 | 41 | 2 | 5 | 131 | 7 | 111 | 1.04e-33 | 114 |
| Msa1380490 | AT1G12090.1 | 72.840 | 81 | 21 | 1 | 51 | 130 | 57 | 137 | 1.39e-33 | 114 |
| Msa1380490 | AT4G22460.1 | 57.692 | 104 | 41 | 3 | 26 | 128 | 29 | 130 | 2.38e-33 | 114 |
| Msa1380490 | AT4G12545.1 | 48.462 | 130 | 40 | 2 | 3 | 131 | 5 | 108 | 2.17e-32 | 110 |
| Msa1380490 | AT4G12470.1 | 42.236 | 161 | 63 | 3 | 1 | 131 | 1 | 161 | 8.16e-32 | 110 |
| Msa1380490 | AT4G12500.1 | 61.905 | 84 | 31 | 1 | 49 | 131 | 94 | 177 | 1.30e-31 | 110 |
| Msa1380490 | AT1G12100.1 | 46.094 | 128 | 62 | 3 | 6 | 131 | 10 | 132 | 9.23e-30 | 104 |
| Msa1380490 | AT4G12530.1 | 55.422 | 83 | 37 | 0 | 48 | 130 | 33 | 115 | 3.00e-27 | 97.8 |
| Msa1380490 | AT3G22142.1 | 52.381 | 84 | 38 | 2 | 48 | 130 | 1396 | 1478 | 1.76e-19 | 83.6 |
| Msa1380490 | AT2G10940.2 | 49.412 | 85 | 41 | 2 | 48 | 131 | 207 | 290 | 1.34e-18 | 79.7 |
| Msa1380490 | AT2G10940.1 | 49.412 | 85 | 41 | 2 | 48 | 131 | 207 | 290 | 1.34e-18 | 79.7 |
| Msa1380490 | AT3G22120.2 | 54.118 | 85 | 36 | 3 | 48 | 130 | 266 | 349 | 4.16e-18 | 79.0 |
| Msa1380490 | AT1G62500.1 | 47.126 | 87 | 44 | 2 | 45 | 130 | 208 | 293 | 4.67e-18 | 78.2 |
| Msa1380490 | AT3G22120.1 | 54.118 | 85 | 36 | 3 | 48 | 130 | 249 | 332 | 8.26e-18 | 77.8 |
| Msa1380490 | AT4G15160.2 | 51.163 | 86 | 38 | 4 | 48 | 130 | 98 | 182 | 3.41e-17 | 74.3 |
| Msa1380490 | AT4G15160.1 | 51.163 | 86 | 38 | 4 | 48 | 130 | 180 | 264 | 1.15e-16 | 74.3 |
| Msa1380490 | AT4G22490.1 | 32.584 | 89 | 58 | 1 | 42 | 130 | 30 | 116 | 3.04e-13 | 62.0 |
| Msa1380490 | AT4G22520.1 | 29.231 | 130 | 73 | 3 | 1 | 130 | 7 | 117 | 5.27e-12 | 58.9 |
Find 38 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTAATGGGAAGATTA+AGG | 0.239655 | tig0020375:-5419 | None:intergenic |
| AAGAACCAAGCTCAAATTAA+TGG | 0.256221 | tig0020375:-5430 | None:intergenic |
| TGGTGTGTGTGCTGATGTAT+TGG | 0.312025 | tig0020375:+5269 | Msa1380490:CDS |
| GCTCTTAAGGCTAATATCTT+AGG | 0.323048 | tig0020375:+5390 | Msa1380490:CDS |
| GTGCCTTTGTACTGCTCTTA+AGG | 0.328363 | tig0020375:+5377 | Msa1380490:CDS |
| CCTAGAGACACAATTAAGTT+TGG | 0.348121 | tig0020375:+5249 | Msa1380490:CDS |
| GGTGTGTGTGCTGATGTATT+GGG | 0.364523 | tig0020375:+5270 | Msa1380490:CDS |
| CCATGCTGCTCTCTCATTGA+TGG | 0.378656 | tig0020375:+5330 | Msa1380490:CDS |
| AGGACAAGTTGGATATTTAG+AGG | 0.384493 | tig0020375:-5229 | None:intergenic |
| AAGGTGGATGTGGGTGTTTG+TGG | 0.411134 | tig0020375:-5206 | None:intergenic |
| AGAGAGCAGCATGGTGTCTT+TGG | 0.413985 | tig0020375:-5321 | None:intergenic |
| AGAACCAAGCTCAAATTAAT+GGG | 0.417409 | tig0020375:-5429 | None:intergenic |
| TAAGCACACACGAAACCCTT+TGG | 0.418402 | tig0020375:-5474 | None:intergenic |
| TGTGATCTTTGTGAGGTGGT+GGG | 0.421624 | tig0020375:-5182 | None:intergenic |
| GTTCTTAACTATTGTGGAAA+GGG | 0.421891 | tig0020375:+5447 | Msa1380490:CDS |
| CTGTGATCTTTGTGAGGTGG+TGG | 0.426802 | tig0020375:-5183 | None:intergenic |
| CAAGTTGGATATTTAGAGGA+AGG | 0.430718 | tig0020375:-5225 | None:intergenic |
| AGCTTGGTTCTTAACTATTG+TGG | 0.458633 | tig0020375:+5441 | Msa1380490:CDS |
| GTGATCTTTGTGAGGTGGTG+GGG | 0.458860 | tig0020375:-5181 | None:intergenic |
| TGATCTTTGTGAGGTGGTGG+GGG | 0.471644 | tig0020375:-5180 | None:intergenic |
| GAGCAGCATGGTGTCTTTGG+TGG | 0.477521 | tig0020375:-5318 | None:intergenic |
| TATTTAGAGGAAGGTGGATG+TGG | 0.477977 | tig0020375:-5216 | None:intergenic |
| GCAAAGGAGCATAGCAACCT+TGG | 0.496091 | tig0020375:-5109 | None:intergenic |
| ATCATTCCAAATGGCTTCCA+AGG | 0.499837 | tig0020375:+5092 | None:intergenic |
| TCTTCCCATTAATTTGAGCT+TGG | 0.503356 | tig0020375:+5425 | Msa1380490:CDS |
| ATTGTGTCTCTAGGACAAGT+TGG | 0.512609 | tig0020375:-5240 | None:intergenic |
| GGTTTGATTAATGTTGAGCT+TGG | 0.521860 | tig0020375:+5291 | Msa1380490:CDS |
| GGTTCTTAACTATTGTGGAA+AGG | 0.535979 | tig0020375:+5446 | Msa1380490:CDS |
| CCAAACTTAATTGTGTCTCT+AGG | 0.547203 | tig0020375:-5249 | None:intergenic |
| GTTGGATATTTAGAGGAAGG+TGG | 0.548060 | tig0020375:-5222 | None:intergenic |
| TTGTGGAAAGGGAGTTCCAA+AGG | 0.553018 | tig0020375:+5458 | Msa1380490:CDS |
| ATTTAGAGGAAGGTGGATGT+GGG | 0.563461 | tig0020375:-5215 | None:intergenic |
| TGTGGAAAGGGAGTTCCAAA+GGG | 0.568343 | tig0020375:+5459 | Msa1380490:CDS |
| TGGCTGTGATCTTTGTGAGG+TGG | 0.576896 | tig0020375:-5186 | None:intergenic |
| AAAATAGGATGTTGAGGCAA+AGG | 0.587552 | tig0020375:-5125 | None:intergenic |
| TTGTGGCTGTGATCTTTGTG+AGG | 0.617514 | tig0020375:-5189 | None:intergenic |
| TAGCCTTAAGAGCAGTACAA+AGG | 0.662253 | tig0020375:-5380 | None:intergenic |
| CCATCAATGAGAGAGCAGCA+TGG | 0.704306 | tig0020375:-5330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCAAATTAATGGGAAGATTA+AGG | - | tig0020375:5422-5441 | None:intergenic | 25.0% |
| AGAACCAAGCTCAAATTAAT+GGG | - | tig0020375:5432-5451 | None:intergenic | 30.0% | |
| AAGAACCAAGCTCAAATTAA+TGG | - | tig0020375:5433-5452 | None:intergenic | 30.0% | |
| GTTCTTAACTATTGTGGAAA+GGG | + | tig0020375:5447-5466 | Msa1380490:CDS | 30.0% | |
| AAAATAGGATGTTGAGGCAA+AGG | - | tig0020375:5128-5147 | None:intergenic | 35.0% | |
| CAGTGAAAAATAGGATGTTG+AGG | - | tig0020375:5134-5153 | None:intergenic | 35.0% | |
| !! | CAACATCCTATTTTTCACTG+TGG | + | tig0020375:5134-5153 | Msa1380490:CDS | 35.0% |
| AGCTTACCACAGTGAAAAAT+AGG | - | tig0020375:5143-5162 | None:intergenic | 35.0% | |
| ! | CAAGTTGGATATTTAGAGGA+AGG | - | tig0020375:5228-5247 | None:intergenic | 35.0% |
| ! | AGGACAAGTTGGATATTTAG+AGG | - | tig0020375:5232-5251 | None:intergenic | 35.0% |
| CCAAACTTAATTGTGTCTCT+AGG | - | tig0020375:5252-5271 | None:intergenic | 35.0% | |
| CCTAGAGACACAATTAAGTT+TGG | + | tig0020375:5249-5268 | Msa1380490:CDS | 35.0% | |
| GGTTTGATTAATGTTGAGCT+TGG | + | tig0020375:5291-5310 | Msa1380490:CDS | 35.0% | |
| GCTCTTAAGGCTAATATCTT+AGG | + | tig0020375:5390-5409 | Msa1380490:CDS | 35.0% | |
| ! | TCTTCCCATTAATTTGAGCT+TGG | + | tig0020375:5425-5444 | Msa1380490:CDS | 35.0% |
| ! | AGCTTGGTTCTTAACTATTG+TGG | + | tig0020375:5441-5460 | Msa1380490:CDS | 35.0% |
| GGTTCTTAACTATTGTGGAA+AGG | + | tig0020375:5446-5465 | Msa1380490:CDS | 35.0% | |
| ATTTAGAGGAAGGTGGATGT+GGG | - | tig0020375:5218-5237 | None:intergenic | 40.0% | |
| TATTTAGAGGAAGGTGGATG+TGG | - | tig0020375:5219-5238 | None:intergenic | 40.0% | |
| GTTGGATATTTAGAGGAAGG+TGG | - | tig0020375:5225-5244 | None:intergenic | 40.0% | |
| !! | ATTGTGTCTCTAGGACAAGT+TGG | - | tig0020375:5243-5262 | None:intergenic | 40.0% |
| ! | TAGCCTTAAGAGCAGTACAA+AGG | - | tig0020375:5383-5402 | None:intergenic | 40.0% |
| TGTGATCTTTGTGAGGTGGT+GGG | - | tig0020375:5185-5204 | None:intergenic | 45.0% | |
| TTGTGGCTGTGATCTTTGTG+AGG | - | tig0020375:5192-5211 | None:intergenic | 45.0% | |
| ! | TGGTGTGTGTGCTGATGTAT+TGG | + | tig0020375:5269-5288 | Msa1380490:CDS | 45.0% |
| ! | GGTGTGTGTGCTGATGTATT+GGG | + | tig0020375:5270-5289 | Msa1380490:CDS | 45.0% |
| GTGCCTTTGTACTGCTCTTA+AGG | + | tig0020375:5377-5396 | Msa1380490:CDS | 45.0% | |
| TTGTGGAAAGGGAGTTCCAA+AGG | + | tig0020375:5458-5477 | Msa1380490:CDS | 45.0% | |
| TGTGGAAAGGGAGTTCCAAA+GGG | + | tig0020375:5459-5478 | Msa1380490:CDS | 45.0% | |
| TAAGCACACACGAAACCCTT+TGG | - | tig0020375:5477-5496 | None:intergenic | 45.0% | |
| ! | GCAAAGGAGCATAGCAACCT+TGG | - | tig0020375:5112-5131 | None:intergenic | 50.0% |
| ! | TGATCTTTGTGAGGTGGTGG+GGG | - | tig0020375:5183-5202 | None:intergenic | 50.0% |
| GTGATCTTTGTGAGGTGGTG+GGG | - | tig0020375:5184-5203 | None:intergenic | 50.0% | |
| CTGTGATCTTTGTGAGGTGG+TGG | - | tig0020375:5186-5205 | None:intergenic | 50.0% | |
| TGGCTGTGATCTTTGTGAGG+TGG | - | tig0020375:5189-5208 | None:intergenic | 50.0% | |
| AAGGTGGATGTGGGTGTTTG+TGG | - | tig0020375:5209-5228 | None:intergenic | 50.0% | |
| AGAGAGCAGCATGGTGTCTT+TGG | - | tig0020375:5324-5343 | None:intergenic | 50.0% | |
| CCATCAATGAGAGAGCAGCA+TGG | - | tig0020375:5333-5352 | None:intergenic | 50.0% | |
| CCATGCTGCTCTCTCATTGA+TGG | + | tig0020375:5330-5349 | Msa1380490:CDS | 50.0% | |
| GAGCAGCATGGTGTCTTTGG+TGG | - | tig0020375:5321-5340 | None:intergenic | 55.0% | |
| !! | TTGTGAGGTGGTGGGGGACA+TGG | - | tig0020375:5177-5196 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020375 | gene | 5102 | 5497 | 5102 | ID=Msa1380490;Name=Msa1380490 |
| tig0020375 | mRNA | 5102 | 5497 | 5102 | ID=Msa1380490-mRNA-1;Parent=Msa1380490;Name=Msa1380490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|131 |
| tig0020375 | exon | 5102 | 5497 | 5102 | ID=Msa1380490-mRNA-1:exon:7150;Parent=Msa1380490-mRNA-1 |
| tig0020375 | CDS | 5102 | 5497 | 5102 | ID=Msa1380490-mRNA-1:cds;Parent=Msa1380490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
