AlfalfaGEDB | Msa1380490

M. sativa cultivar zhongmu-4 / Msa1380490

KEGG: -
GO: -
PFAM: PF14547.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380490	XP_003608741.1	95.455	132	5	1	1	131	1	132	4.86e-82	246

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380490	sp\|P14009\|14KD_DAUCA	59.091	132	50	3	2	130	6	136	1.63e-39	132

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380490	G7JIZ5	95.455	132	5	1	1	131	1	132	2.32e-82	246

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa1380490	0.808557	2.920628e-50	-8.615850e-47
Msa0006700	Msa1380490	-0.813174	2.925268e-51	-8.615850e-47
Msa0012780	Msa1380490	0.816433	5.545059e-52	-8.615850e-47
Msa0012820	Msa1380490	0.863767	1.967168e-64	-8.615850e-47
Msa0036230	Msa1380490	0.858305	9.027504e-63	-8.615850e-47
Msa0036580	Msa1380490	0.843081	1.744201e-58	-8.615850e-47
Msa0045850	Msa1380490	0.805259	1.454971e-49	-8.615850e-47
Msa0048950	Msa1380490	0.859076	5.312680e-63	-8.615850e-47
Msa0051100	Msa1380490	-0.804550	2.046942e-49	-8.615850e-47
Msa0059880	Msa1380490	0.824026	1.008683e-53	-8.615850e-47

Showing 1 to 10 of 170 entries

Previous1 2 3 4 5…17Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380490	MtrunA17_Chr4g0056371	95.455	132	5	1	1	131	1	132	4.47e-86	246
Msa1380490	MtrunA17_Chr4g0060391	92.366	131	2	1	1	131	1	123	7.71e-81	233
Msa1380490	MtrunA17_Chr2g0290521	54.688	128	52	3	4	131	6	127	2.78e-38	125
Msa1380490	MtrunA17_Chr4g0056391	54.015	137	55	2	3	131	7	143	7.15e-38	125
Msa1380490	MtrunA17_Chr4g0056411	47.853	163	49	3	3	130	7	168	2.80e-37	124
Msa1380490	MtrunA17_Chr1g0149481	55.833	120	39	3	26	131	45	164	3.53e-36	121
Msa1380490	MtrunA17_Chr1g0149491	63.855	83	30	0	49	131	69	151	2.75e-34	116
Msa1380490	MtrunA17_Chr1g0149471	66.265	83	28	0	49	131	128	210	4.23e-34	117
Msa1380490	MtrunA17_Chr3g0137521	68.675	83	25	1	49	130	47	129	7.06e-34	114
Msa1380490	MtrunA17_Chr4g0056401	45.802	131	68	2	2	131	6	134	7.72e-30	104

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1380490	AT2G45180.1	62.222	135	46	2	1	131	1	134	4.52e-47	148
Msa1380490	AT5G46890.1	64.341	129	41	4	3	131	4	127	3.96e-42	135
Msa1380490	AT4G12520.1	52.941	136	52	3	1	131	1	129	1.88e-38	126
Msa1380490	AT4G12510.1	52.941	136	52	3	1	131	1	129	1.88e-38	126
Msa1380490	AT5G46900.1	62.791	129	43	3	3	131	4	127	4.43e-38	125
Msa1380490	AT1G62510.1	73.494	83	21	1	49	130	67	149	1.38e-36	122
Msa1380490	AT4G00165.1	52.846	123	43	3	12	130	17	128	3.72e-36	120
Msa1380490	AT4G00165.2	52.846	123	43	3	12	130	17	128	3.72e-36	120
Msa1380490	AT4G12480.1	40.476	168	63	3	1	131	1	168	6.60e-34	116
Msa1380490	AT4G12490.1	41.530	183	54	4	1	131	1	182	9.08e-34	116

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Find 38 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGATGTTGAGGCAA+AGG	0.587552	tig0020375:-5125	None:intergenic
AAGAACCAAGCTCAAATTAA+TGG	0.256221	tig0020375:-5430	None:intergenic
AAGGTGGATGTGGGTGTTTG+TGG	0.411134	tig0020375:-5206	None:intergenic
AGAACCAAGCTCAAATTAAT+GGG	0.417409	tig0020375:-5429	None:intergenic
AGAGAGCAGCATGGTGTCTT+TGG	0.413985	tig0020375:-5321	None:intergenic
AGCTTGGTTCTTAACTATTG+TGG	0.458633	tig0020375:+5441	Msa1380490:CDS
AGGACAAGTTGGATATTTAG+AGG	0.384493	tig0020375:-5229	None:intergenic
ATCATTCCAAATGGCTTCCA+AGG	0.499837	tig0020375:+5092	None:intergenic
ATTGTGTCTCTAGGACAAGT+TGG	0.512609	tig0020375:-5240	None:intergenic
ATTTAGAGGAAGGTGGATGT+GGG	0.563461	tig0020375:-5215	None:intergenic

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAACCAAGCTCAAATTAAT+GGG	-	tig0020375:5432-5451	None:intergenic	30.0%
AAGAACCAAGCTCAAATTAA+TGG	-	tig0020375:5433-5452	None:intergenic	30.0%
GTTCTTAACTATTGTGGAAA+GGG	+	tig0020375:5447-5466	Msa1380490:CDS	30.0%
AAAATAGGATGTTGAGGCAA+AGG	-	tig0020375:5128-5147	None:intergenic	35.0%
CAGTGAAAAATAGGATGTTG+AGG	-	tig0020375:5134-5153	None:intergenic	35.0%
AGCTTACCACAGTGAAAAAT+AGG	-	tig0020375:5143-5162	None:intergenic	35.0%
CCAAACTTAATTGTGTCTCT+AGG	-	tig0020375:5252-5271	None:intergenic	35.0%
CCTAGAGACACAATTAAGTT+TGG	+	tig0020375:5249-5268	Msa1380490:CDS	35.0%
GGTTTGATTAATGTTGAGCT+TGG	+	tig0020375:5291-5310	Msa1380490:CDS	35.0%
GCTCTTAAGGCTAATATCTT+AGG	+	tig0020375:5390-5409	Msa1380490:CDS	35.0%

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
tig0020375	gene	5102	5497	5102	ID=Msa1380490;Name=Msa1380490
tig0020375	mRNA	5102	5497	5102	ID=Msa1380490-mRNA-1;Parent=Msa1380490;Name=Msa1380490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|131
tig0020375	exon	5102	5497	5102	ID=Msa1380490-mRNA-1:exon:7150;Parent=Msa1380490-mRNA-1
tig0020375	CDS	5102	5497	5102	ID=Msa1380490-mRNA-1:cds;Parent=Msa1380490-mRNA-1

Gene Sequence

>Msa1380490

ATGGCTTCCAAGGTTGCTATGCTCCTTTGCCTCAACATCCTATTTTTCACTGTGGTAAGCTCTACATATGTTCCATGTCCCCCACCACCTCACAAAGATCACAGCCACAAACACCCACATCCACCTTCCTCTAAATATCCAACTTGTCCTAGAGACACAATTAAGTTTGGTGTGTGTGCTGATGTATTGGGTTTGATTAATGTTGAGCTTGGTAAGCCACCAAAGACACCATGCTGCTCTCTCATTGATGGTCTTGCTAATCTTGAAGCTGCTGTGTGCCTTTGTACTGCTCTTAAGGCTAATATCTTAGGCATTAACCTTAATCTTCCCATTAATTTGAGCTTGGTTCTTAACTATTGTGGAAAGGGAGTTCCAAAGGGTTTCGTGTGTGCTTAA

Protein sequence

>Msa1380490

MASKVAMLLCLNILFFTVVSSTYVPCPPPPHKDHSHKHPHPPSSKYPTCPRDTIKFGVCADVLGLINVELGKPPKTPCCSLIDGLANLEAAVCLCTALKANILGINLNLPINLSLVLNYCGKGVPKGFVCA*