AlfalfaGEDB | Msa0957820

M. sativa cultivar zhongmu-4 / Msa0957820

KEGG: -
GO: -
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957820	sp\|O65468\|CRK8_ARATH	36.186	409	227	9	274	651	34	439	8.10e-78	264
Msa0957820	sp\|O65468\|CRK8_ARATH	35.366	246	138	7	27	262	37	271	3.22e-33	139

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957820	A0A396HHB1	84.766	663	87	5	1	651	1	661	0.0	1107

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072830	Msa0957820	0.803546	3.310294e-49	-8.615850e-47
Msa0090350	Msa0957820	0.803169	3.963121e-49	-8.615850e-47
Msa0099090	Msa0957820	0.800268	1.560891e-48	-8.615850e-47
Msa0117300	Msa0957820	0.819080	1.401443e-52	-8.615850e-47
Msa0160650	Msa0957820	0.829094	6.238332e-55	-8.615850e-47
Msa0184030	Msa0957820	0.801427	9.049591e-49	-8.615850e-47
Msa0225370	Msa0957820	0.826914	2.087933e-54	-8.615850e-47
Msa0256410	Msa0957820	0.818785	1.635064e-52	-8.615850e-47
Msa0266380	Msa0957820	0.854894	9.078463e-62	-8.615850e-47
Msa0297320	Msa0957820	0.802200	6.280781e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957820	MtrunA17_Chr6g0475201	84.766	663	87	5	1	651	1	661	0.0	1107
Msa0957820	MtrunA17_Chr6g0475121	87.684	544	63	2	1	540	1	544	0.0	927
Msa0957820	MtrunA17_Chr6g0474901	69.347	659	188	2	1	651	1	653	0.0	925
Msa0957820	MtrunA17_Chr6g0475001	69.637	662	187	6	1	651	1	659	0.0	924
Msa0957820	MtrunA17_Chr6g0475091	68.333	660	200	2	1	651	9	668	0.0	894
Msa0957820	MtrunA17_Chr6g0474871	66.921	656	208	4	1	651	1	652	0.0	864
Msa0957820	MtrunA17_Chr6g0474811	66.517	666	202	7	1	651	1	660	0.0	860
Msa0957820	MtrunA17_Chr8g0347571	54.978	673	262	12	5	654	6	660	0.0	690
Msa0957820	MtrunA17_Chr6g0475111	54.519	675	274	12	6	654	10	677	0.0	684
Msa0957820	MtrunA17_Chr6g0474861	56.736	386	124	4	274	651	23	373	8.63e-136	411

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0957820	AT4G23160.1	36.186	409	227	9	274	651	40	445	1.56e-78	264
Msa0957820	AT4G23160.1	35.366	246	138	7	27	262	43	277	3.53e-34	139
Msa0957820	AT4G05200.1	38.679	424	208	14	273	654	23	436	2.88e-78	263
Msa0957820	AT4G05200.1	38.776	245	141	6	9	249	9	248	9.51e-43	164
Msa0957820	AT4G05200.2	38.679	424	208	14	273	654	41	454	3.57e-78	263
Msa0957820	AT4G05200.2	38.776	245	141	6	9	249	27	266	8.39e-43	165
Msa0957820	AT4G23160.3	36.010	411	229	8	274	653	620	1027	4.37e-77	266
Msa0957820	AT4G23160.3	35.366	246	138	7	27	262	623	857	8.67e-34	139
Msa0957820	AT4G23160.2	36.010	411	229	8	274	653	620	1027	4.37e-77	266
Msa0957820	AT4G23160.2	35.366	246	138	7	27	262	623	857	8.67e-34	139

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Find 133 sgRNAs with CRISPR-Local

Find 579 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGTGATGGAAAGGT+GGG	0.597534	6_3:+70131317	Msa0957820:CDS
AAAATTTCATAGCCTTAAAG+TGG	0.451624	6_3:+70131580	Msa0957820:CDS
AAACAAGCTGTGATTTGGTA+CGG	0.594498	6_3:+70130987	Msa0957820:CDS
AAAGTAATCAAGACTCTTGT+TGG	0.324054	6_3:-70138813	None:intergenic
AAAGTGGAAGAAAATGTGTA+TGG	0.518385	6_3:+70131596	Msa0957820:CDS
AAAGTGTCATTCCTCCCCAG+AGG	0.706414	6_3:+70131697	Msa0957820:CDS
AAGATTGAAGGTCTAGCATC+CGG	0.479600	6_3:-70139776	None:intergenic
AAGGACAATTACATTGGCAA+AGG	0.565542	6_3:+70138464	Msa0957820:CDS
AAGTGTCATTCCTCCCCAGA+GGG	0.628339	6_3:+70131698	Msa0957820:CDS
AAGTTCTAAGCAAGGTGTAG+AGG	0.571666	6_3:+70138679	Msa0957820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCATTTATCTATCCTTGTT+AGG	+	chr6_3:70130667-70130686	Msa0957820:CDS	30.0%
ACCTAACAAGGATAGATAAA+TGG	-	chr6_3:70130671-70130690	None:intergenic	30.0%
AAAGTGGAAGAAAATGTGTA+TGG	+	chr6_3:70131596-70131615	Msa0957820:CDS	30.0%
ACATTTATATCGCGAAACAT+AGG	-	chr6_3:70131794-70131813	None:intergenic	30.0%
TACAAAAGATTTGTCAAGTG+AGG	+	chr6_3:70131970-70131989	Msa0957820:CDS	30.0%
TGATCAGTAAAGAAATTCCA+TGG	+	chr6_3:70132017-70132036	Msa0957820:CDS	30.0%
AGAAATTCCATGGTCATATT+TGG	+	chr6_3:70132027-70132046	Msa0957820:CDS	30.0%
GAAATTCCATGGTCATATTT+GGG	+	chr6_3:70132028-70132047	Msa0957820:CDS	30.0%
TCTTTAATCCAAACACAATC+CGG	-	chr6_3:70132918-70132937	None:intergenic	30.0%
ACACACACACAAAAACTAAA+AGG	+	chr6_3:70133027-70133046	Msa0957820:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	70130648	70140130	70130648	ID=Msa0957820;Name=Msa0957820
chr6_3	mRNA	70130648	70140130	70130648	ID=Msa0957820-mRNA-1;Parent=Msa0957820;Name=Msa0957820-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.5\|0.8\|1\|0.75\|1\|5\|455\|658
chr6_3	exon	70130648	70132145	70130648	ID=Msa0957820-mRNA-1:exon:12794;Parent=Msa0957820-mRNA-1
chr6_3	exon	70138196	70138318	70138196	ID=Msa0957820-mRNA-1:exon:12795;Parent=Msa0957820-mRNA-1
chr6_3	exon	70138387	70138508	70138387	ID=Msa0957820-mRNA-1:exon:12796;Parent=Msa0957820-mRNA-1
chr6_3	exon	70138632	70138842	70138632	ID=Msa0957820-mRNA-1:exon:12797;Parent=Msa0957820-mRNA-1
chr6_3	exon	70139653	70140130	70139653	ID=Msa0957820-mRNA-1:exon:12798;Parent=Msa0957820-mRNA-1
chr6_3	CDS	70130648	70132145	70130648	ID=Msa0957820-mRNA-1:cds;Parent=Msa0957820-mRNA-1
chr6_3	CDS	70138196	70138318	70138196	ID=Msa0957820-mRNA-1:cds;Parent=Msa0957820-mRNA-1
chr6_3	CDS	70138387	70138508	70138387	ID=Msa0957820-mRNA-1:cds;Parent=Msa0957820-mRNA-1
chr6_3	CDS	70138632	70138842	70138632	ID=Msa0957820-mRNA-1:cds;Parent=Msa0957820-mRNA-1
chr6_3	CDS	70139653	70139675	70139653	ID=Msa0957820-mRNA-1:cds;Parent=Msa0957820-mRNA-1
chr6_3	three_prime_UTR	70139676	70140130	70139676	ID=Msa0957820-mRNA-1:three_prime_utr;Parent=Msa0957820-mRNA-1

Gene Sequence

>Msa0957820

ATGGCTTCCTCTAATATTCTCCATTTATCTATCCTTGTTAGGTTCCTCTTTTCTGCAACTATCATGGCACAAGACTCTCCATTGTATTTGAATACAATTTGTTCCACCAAAGTTACCACACACAGCAGCACCTTCCAAAGCAATCTCATAAACCTCTTCTCTTCATTGCCATCAAAAGCCATAAGCAACATCAAATTCTACAACACCACAGTCACTAGTATAAATCCTTCTGAGTCCGTCTATGGATCGTTCATGTGTAGAGGTGACATACCGTCTCGGCTATGTCATGACTGCATAGTTAAAGCAACCAAGCAACTATCCTCAGAGTGCTCTTTGTCAAAACAAGCTGTGATTTGGTACGGTGAGTGCATGGTTCGATACTCTGACATATCTTTTTTTTCCAGGATCGATATCATCTCAGGTTTTCACTGGTGCAATACTGCTGATGTCTTAAACACGAAAAGCTTCGTGTCTTTATTGTTTTCAACCATGAATCGTACTGTAGATGAAGCAGCAAGTCCACTTATTGGTGACAAAAACAAGAAGTTTGCAACCAAAGAAGCACAAGATTCAGAAAATCAGACCCTTTACTGTCTAGTTCAGTGCACGCCGGATTTGTCGCCTAATGATTGCAGAACCTGTCTCAGTAGTGCTATTGAGAAAGTTTCAAAAAGTTGTGATGGAAAGGTGGGCGGGAGATTTCTTTATCCGAGCTGTAATGTTAGGTATGAATTATATCCATTTTATAGGTCTATTAATGTTCTTTCACCAAATGAGCTAGCTCCTCAAACAAATGATTCCAAACAAGATTCTAAACTTTCAGAAGATTCATTTTATCTTTCCTATAATTGCTCAAGTAACCACAACCCAATCACCGACAAAAACATCCAATTACTTCTGTCTTATTTGTTGTCGAACGCCACCATCGGCAAAAAATTTCATAGCCTTAAAGTGGAAGAAAATGTGTATGGTCTCTTCATGTGTCGAGGTGATCTTCCGTCTCGCCTCTGTGTTCGATGCATCAAAAACGCAACTGAACAACTATACTCAAAGTGTCATTCCTCCCCAGAGGGTATAATTTGGTACAGCCATTGCTTACTTCGCTATTCAAATCAGTATTTCTTCAATCGCTTTGAAACAAGACCTATGTTTCGCGATATAAATGTTACCAACGATCCCATCCTGGACCAAAACTTGTTCACAAATGCATTATCAAATCAATTATCTGAACTTGTCAATGTAACAGGGAACAATGATGAAAAATATATGACAAATTCATTGATATTGAATGATAAACAAACCTTGTATACTCTTGAACAATGTACAAAAGATTTGTCAAGTGAGGAATGCAATTCATGTCTAAATGATATGATCAGTAAAGAAATTCCATGGTCATATTTGGGAAGTGTTGGAGGAAGAATTGTATATCCTAGCTGCAATCTTAGGTTTGAATTGTTCAAATTTTATATGGACGGCAATGAAGCTCTACCACCTGGAAAGAAGAGGACAATTATATTCATTGTTGTCTCTATTATTATTTTGGTGATGTTCTTCTCTATTGGCTACTTTTTGATAAAGAGAAGGCTAAGAAAGAGTCGTAGGACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCCACGTTAGAGCCACTGCAATTCGATTGGGTGGTGATTGAAGCAGCAACCAACAACTTTTCTAAGGACAATTACATTGGCAAAGGAGGGTTTGGAGAGGTTTACAAGGGTATCCTTTCTAATGGACGAGAAGTAGCTATAAAGAGGCTTTCAAGAAGTTCTAAGCAAGGTGTAGAGGAGTTCAAGAATGAAATTCTATTGATAGCCAAGCTTCAACATAGAAATCTAGTGACATTTATTGGCTTTTGCCTTGAAGGACATGAGAAGATACTTATTTATGAATATGTTTCCAACAAGAGTCTTGATTACTTTTTATTTGGTATGGAGACAGTGGATGGATAA

Protein sequence

>Msa0957820

MASSNILHLSILVRFLFSATIMAQDSPLYLNTICSTKVTTHSSTFQSNLINLFSSLPSKAISNIKFYNTTVTSINPSESVYGSFMCRGDIPSRLCHDCIVKATKQLSSECSLSKQAVIWYGECMVRYSDISFFSRIDIISGFHWCNTADVLNTKSFVSLLFSTMNRTVDEAASPLIGDKNKKFATKEAQDSENQTLYCLVQCTPDLSPNDCRTCLSSAIEKVSKSCDGKVGGRFLYPSCNVRYELYPFYRSINVLSPNELAPQTNDSKQDSKLSEDSFYLSYNCSSNHNPITDKNIQLLLSYLLSNATIGKKFHSLKVEENVYGLFMCRGDLPSRLCVRCIKNATEQLYSKCHSSPEGIIWYSHCLLRYSNQYFFNRFETRPMFRDINVTNDPILDQNLFTNALSNQLSELVNVTGNNDEKYMTNSLILNDKQTLYTLEQCTKDLSSEECNSCLNDMISKEIPWSYLGSVGGRIVYPSCNLRFELFKFYMDGNEALPPGKKRTIIFIVVSIIILVMFFSIGYFLIKRRLRKSRRTILRENFGEESATLEPLQFDWVVIEAATNNFSKDNYIGKGGFGEVYKGILSNGREVAIKRLSRSSKQGVEEFKNEILLIAKLQHRNLVTFIGFCLEGHEKILIYEYVSNKSLDYFLFGMETVDG*