Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793240 | XP_003591148.1 | 93.431 | 137 | 9 | 0 | 1 | 137 | 1 | 137 | 3.01e-85 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793240 | sp|P43349|TCTP_SOLTU | 84.672 | 137 | 21 | 0 | 1 | 137 | 1 | 137 | 1.97e-78 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793240 | G7I8P9 | 93.431 | 137 | 9 | 0 | 1 | 137 | 1 | 137 | 1.44e-85 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0793240 | 0.804706 | 1.899697e-49 | -8.615850e-47 |
| Msa0029850 | Msa0793240 | 0.809814 | 1.570921e-50 | -8.615850e-47 |
| Msa0032860 | Msa0793240 | 0.802702 | 4.950183e-49 | -8.615850e-47 |
| Msa0077180 | Msa0793240 | 0.813340 | 2.690085e-51 | -8.615850e-47 |
| Msa0096980 | Msa0793240 | 0.809123 | 2.210680e-50 | -8.615850e-47 |
| Msa0628740 | Msa0793240 | 0.810331 | 1.215473e-50 | -8.615850e-47 |
| Msa0631990 | Msa0793240 | 0.805504 | 1.293286e-49 | -8.615850e-47 |
| Msa0666140 | Msa0793240 | 0.809848 | 1.544562e-50 | -8.615850e-47 |
| Msa0670660 | Msa0793240 | 0.810887 | 9.218051e-51 | -8.615850e-47 |
| Msa0704730 | Msa0793240 | 0.808691 | 2.734922e-50 | -8.615850e-47 |
| Msa0747260 | Msa0793240 | 0.867892 | 9.789069e-66 | -8.615850e-47 |
| Msa0793240 | Msa0801740 | 0.830523 | 2.799591e-55 | -8.615850e-47 |
| Msa0793240 | Msa0982270 | 0.822020 | 2.962022e-53 | -8.615850e-47 |
| Msa0793240 | Msa0994370 | 0.803501 | 3.382387e-49 | -8.615850e-47 |
| Msa0793240 | Msa1174310 | 0.811290 | 7.537903e-51 | -8.615850e-47 |
| Msa0793240 | Msa1235400 | 0.805892 | 1.071746e-49 | -8.615850e-47 |
| Msa0793240 | Msa1258380 | -0.811888 | 5.589311e-51 | -8.615850e-47 |
| Msa0793240 | Msa1270730 | 0.810626 | 1.049718e-50 | -8.615850e-47 |
| Msa0793240 | Msa1276510 | 0.800752 | 1.243373e-48 | -8.615850e-47 |
| Msa0793240 | Msa1307740 | 0.830967 | 2.178534e-55 | -8.615850e-47 |
| Msa0793240 | Msa1314770 | 0.806852 | 6.726940e-50 | -8.615850e-47 |
| Msa0793240 | Msa1348600 | 0.813473 | 2.514287e-51 | -8.615850e-47 |
| Msa0793240 | Msa1357430 | 0.810131 | 1.342387e-50 | -8.615850e-47 |
| Msa0793240 | Msa1444250 | -0.823019 | 1.734969e-53 | -8.615850e-47 |
| Msa0793240 | Msa1462060 | 0.957270 | 4.067204e-115 | -8.615850e-47 |
| Msa0125050 | Msa0793240 | 0.817515 | 3.168203e-52 | -8.615850e-47 |
| Msa0145010 | Msa0793240 | 0.806534 | 7.851821e-50 | -8.615850e-47 |
| Msa0169820 | Msa0793240 | 0.815455 | 9.163963e-52 | -8.615850e-47 |
| Msa0178860 | Msa0793240 | -0.804202 | 2.419576e-49 | -8.615850e-47 |
| Msa0187220 | Msa0793240 | 0.952694 | 1.391888e-110 | -8.615850e-47 |
| Msa0389810 | Msa0793240 | 0.819145 | 1.354034e-52 | -8.615850e-47 |
| Msa0394340 | Msa0793240 | 0.814131 | 1.801107e-51 | -8.615850e-47 |
| Msa0433530 | Msa0793240 | 0.801089 | 1.061243e-48 | -8.615850e-47 |
| Msa0468130 | Msa0793240 | 0.816837 | 4.500362e-52 | -8.615850e-47 |
| Msa0482190 | Msa0793240 | -0.811816 | 5.795208e-51 | -8.615850e-47 |
| Msa0307470 | Msa0793240 | 0.812842 | 3.459590e-51 | -8.615850e-47 |
| Msa0347610 | Msa0793240 | 0.817384 | 3.391668e-52 | -8.615850e-47 |
| Msa0485500 | Msa0793240 | -0.810358 | 1.199528e-50 | -8.615850e-47 |
| Msa0489610 | Msa0793240 | 0.820659 | 6.101579e-53 | -8.615850e-47 |
| Msa0526670 | Msa0793240 | -0.812744 | 3.633936e-51 | -8.615850e-47 |
| Msa0570330 | Msa0793240 | 0.800418 | 1.454450e-48 | -8.615850e-47 |
| Msa0577120 | Msa0793240 | 0.811941 | 5.442898e-51 | -8.615850e-47 |
| Msa0588240 | Msa0793240 | 0.814980 | 1.168751e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793240 | MtrunA17_Chr1g0192171 | 93.431 | 137 | 9 | 0 | 1 | 137 | 1 | 137 | 2.77e-89 | 256 |
| Msa0793240 | MtrunA17_Chr1g0192201 | 92.701 | 137 | 10 | 0 | 1 | 137 | 1 | 137 | 3.19e-88 | 254 |
| Msa0793240 | MtrunA17_Chr2g0295871 | 78.832 | 137 | 28 | 1 | 1 | 137 | 1 | 136 | 1.87e-72 | 214 |
| Msa0793240 | MtrunA17_Chr6g0479151 | 73.723 | 137 | 35 | 1 | 1 | 137 | 1 | 136 | 9.76e-66 | 196 |
| Msa0793240 | MtrunA17_Chr1g0192161 | 80.672 | 119 | 23 | 0 | 19 | 137 | 9 | 127 | 8.64e-53 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793240 | AT3G16640.1 | 75.182 | 137 | 34 | 0 | 1 | 137 | 1 | 137 | 4.35e-70 | 208 |
| Msa0793240 | AT3G05540.1 | 77.863 | 131 | 28 | 1 | 1 | 131 | 1 | 130 | 1.17e-63 | 192 |
Find 47 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATTGTTGACACTTTC+AGG | 0.110440 | 5_3:-5225009 | Msa0793240:CDS |
| TTATGTTACTCTAGTGATTT+TGG | 0.128436 | 5_3:-5224365 | Msa0793240:three_prime_UTR |
| AATTGTAGGTCCTTGAGTTT+AGG | 0.253357 | 5_3:+5224845 | None:intergenic |
| TCCATTCTCAATTTCCTTGC+AGG | 0.264878 | 5_3:+5225275 | None:intergenic |
| ATTGTAGGTCCTTGAGTTTA+GGG | 0.271566 | 5_3:+5224846 | None:intergenic |
| GTATACCAGGATCTTCTTAC+AGG | 0.300413 | 5_3:-5225888 | Msa0793240:intron |
| TGTTGACACTTTCAGGCTTC+AGG | 0.310211 | 5_3:-5225002 | Msa0793240:CDS |
| GCACGTTTAGTTATCATGTT+AGG | 0.330126 | 5_3:-5224400 | Msa0793240:three_prime_UTR |
| CTACTTTGCCTATGGCTTGA+AGG | 0.378916 | 5_3:-5224437 | Msa0793240:three_prime_UTR |
| AACAATATCAACCACTTTGA+CGG | 0.381711 | 5_3:+5225021 | None:intergenic |
| GATGAAATACATACAATTGT+AGG | 0.387035 | 5_3:+5224831 | None:intergenic |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | 5_3:+5224974 | None:intergenic |
| CCTTGTGTTTGCTTACTACA+AGG | 0.455642 | 5_3:-5224485 | Msa0793240:three_prime_UTR |
| GAATGGAATGTTGTGGGAAG+TGG | 0.459626 | 5_3:-5225259 | Msa0793240:CDS |
| CCATTCTCAATTTCCTTGCA+GGG | 0.465811 | 5_3:+5225276 | None:intergenic |
| TAGGCAAAGTAGAGAAAAGT+TGG | 0.474181 | 5_3:+5224448 | None:intergenic |
| TCGTCTCCACCCTCTGCAGA+AGG | 0.482179 | 5_3:+5225067 | None:intergenic |
| TATTTGCAGTGGGTTGTTCA+AGG | 0.483236 | 5_3:-5225118 | Msa0793240:intron |
| AAGAAGAGAGAACTAAAAGA+AGG | 0.488362 | 5_3:+5225948 | None:intergenic |
| CCCTGCAAGGAAATTGAGAA+TGG | 0.490398 | 5_3:-5225276 | Msa0793240:CDS |
| CTTGATTTCCTTCAAGCCAT+AGG | 0.498561 | 5_3:+5224429 | None:intergenic |
| AGTGAGATTGAATAGAATAG+AGG | 0.498595 | 5_3:+5225991 | None:intergenic |
| GGAGCAGTGGATGTGAATAT+TGG | 0.501116 | 5_3:-5225097 | Msa0793240:CDS |
| GGTGCTAACCCTTCTGCAGA+GGG | 0.509467 | 5_3:-5225076 | Msa0793240:CDS |
| TGTAACCATGCTTGTATACC+AGG | 0.532022 | 5_3:-5225901 | Msa0793240:exon |
| CTCTGACTCATTCCCCTGCA+AGG | 0.534349 | 5_3:-5225289 | Msa0793240:CDS |
| GTGTTTGCTTACTACAAGGA+TGG | 0.538874 | 5_3:-5224481 | Msa0793240:three_prime_UTR |
| GGTCCTTGAGTTTAGGGAGA+AGG | 0.545288 | 5_3:+5224852 | None:intergenic |
| GTTCCTTCTCCCTAAACTCA+AGG | 0.563294 | 5_3:-5224855 | Msa0793240:CDS |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | 5_3:-5224511 | Msa0793240:exon |
| CATTCTCAATTTCCTTGCAG+GGG | 0.578074 | 5_3:+5225277 | None:intergenic |
| CGTCTCCACCCTCTGCAGAA+GGG | 0.579433 | 5_3:+5225068 | None:intergenic |
| ATTTACCTGTAAGAAGATCC+TGG | 0.582754 | 5_3:+5225883 | None:intergenic |
| GTTGTGGGAAGTGGAAGGAA+AGG | 0.585239 | 5_3:-5225250 | Msa0793240:intron |
| GAGATTGAATAGAATAGAGG+TGG | 0.587539 | 5_3:+5225994 | None:intergenic |
| AATTGAGAATGGAATGTTGT+GGG | 0.593952 | 5_3:-5225265 | Msa0793240:CDS |
| TTCTGCAGAGGGTGGAGACG+AGG | 0.598044 | 5_3:-5225065 | Msa0793240:CDS |
| GCTAACCCTTCTGCAGAGGG+TGG | 0.604009 | 5_3:-5225073 | Msa0793240:CDS |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | 5_3:+5224456 | None:intergenic |
| GAGGGTGGAGACGAGGATGA+CGG | 0.612656 | 5_3:-5225058 | Msa0793240:CDS |
| TGGTGCTAACCCTTCTGCAG+AGG | 0.618744 | 5_3:-5225077 | Msa0793240:CDS |
| AAGATCCTGGTATACAAGCA+TGG | 0.621063 | 5_3:+5225896 | None:intergenic |
| CCTTGTAGTAAGCAAACACA+AGG | 0.635355 | 5_3:+5224485 | None:intergenic |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | 5_3:-5225110 | Msa0793240:CDS |
| GGAATGTTGTGGGAAGTGGA+AGG | 0.687071 | 5_3:-5225255 | Msa0793240:CDS |
| TGATGATCAAGCCGTCAAAG+TGG | 0.714042 | 5_3:-5225032 | Msa0793240:CDS |
| AAATTGAGAATGGAATGTTG+TGG | 0.718062 | 5_3:-5225266 | Msa0793240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAGATTATTTATTTAT+GGG | + | chr5_3:5225699-5225718 | None:intergenic | 10.0% |
| !! | AGTAAAGATTATTTATTTAT+GGG | + | chr5_3:5225699-5225718 | None:intergenic | 10.0% |
| !!! | AATTATTTAAAACTAAAGTG+AGG | + | chr5_3:5224557-5224576 | None:intergenic | 15.0% |
| !!! | ATATTAGAGATTATTGTTTT+TGG | - | chr5_3:5224883-5224902 | Msa0793240:CDS | 15.0% |
| !! | CTAATTTATGAACATATATT+TGG | + | chr5_3:5225097-5225116 | None:intergenic | 15.0% |
| !!! | TTATCTTTCATCTTTTTATT+TGG | - | chr5_3:5225456-5225475 | Msa0793240:intron | 15.0% |
| !! | CAGTAAAGATTATTTATTTA+TGG | + | chr5_3:5225700-5225719 | None:intergenic | 15.0% |
| !!! | AATTATTTAAAACTAAAGTG+AGG | + | chr5_3:5224557-5224576 | None:intergenic | 15.0% |
| !!! | ATATTAGAGATTATTGTTTT+TGG | - | chr5_3:5224883-5224902 | Msa0793240:CDS | 15.0% |
| !! | CTAATTTATGAACATATATT+TGG | + | chr5_3:5225097-5225116 | None:intergenic | 15.0% |
| !!! | TTATCTTTCATCTTTTTATT+TGG | - | chr5_3:5225456-5225475 | Msa0793240:intron | 15.0% |
| !! | CAGTAAAGATTATTTATTTA+TGG | + | chr5_3:5225700-5225719 | None:intergenic | 15.0% |
| !!! | TAAAACTTCTCTGTTTTTAT+GGG | + | chr5_3:5224654-5224673 | None:intergenic | 20.0% |
| !!! | TTAAAACTTCTCTGTTTTTA+TGG | + | chr5_3:5224655-5224674 | None:intergenic | 20.0% |
| !!! | ATAAAAACAGAGAAGTTTTA+AGG | - | chr5_3:5224654-5224673 | Msa0793240:intron | 20.0% |
| !! | TAAGAGATAATCATGTTTAA+GGG | + | chr5_3:5224812-5224831 | None:intergenic | 20.0% |
| !! | TTAAGAGATAATCATGTTTA+AGG | + | chr5_3:5224813-5224832 | None:intergenic | 20.0% |
| !! | CTTAATCTAATACTTGATTA+TGG | - | chr5_3:5224828-5224847 | Msa0793240:intron | 20.0% |
| !! | TAGAAAGAAACATTATAGAA+AGG | + | chr5_3:5225053-5225072 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGTGGATAAATAA+AGG | - | chr5_3:5225494-5225513 | Msa0793240:intron | 20.0% |
| !!! | CTTTTTTGTGGATAAATAAA+GGG | - | chr5_3:5225495-5225514 | Msa0793240:intron | 20.0% |
| !!! | TAAAACTTCTCTGTTTTTAT+GGG | + | chr5_3:5224654-5224673 | None:intergenic | 20.0% |
| !!! | TTAAAACTTCTCTGTTTTTA+TGG | + | chr5_3:5224655-5224674 | None:intergenic | 20.0% |
| !!! | ATAAAAACAGAGAAGTTTTA+AGG | - | chr5_3:5224654-5224673 | Msa0793240:intron | 20.0% |
| !! | TAAGAGATAATCATGTTTAA+GGG | + | chr5_3:5224812-5224831 | None:intergenic | 20.0% |
| !! | TTAAGAGATAATCATGTTTA+AGG | + | chr5_3:5224813-5224832 | None:intergenic | 20.0% |
| !! | CTTAATCTAATACTTGATTA+TGG | - | chr5_3:5224828-5224847 | Msa0793240:intron | 20.0% |
| !! | TAGAAAGAAACATTATAGAA+AGG | + | chr5_3:5225053-5225072 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGTGGATAAATAA+AGG | - | chr5_3:5225494-5225513 | Msa0793240:intron | 20.0% |
| !!! | CTTTTTTGTGGATAAATAAA+GGG | - | chr5_3:5225495-5225514 | Msa0793240:intron | 20.0% |
| ! | AAAAATCTCAAAGATGATGA+TGG | + | chr5_3:5224406-5224425 | None:intergenic | 25.0% |
| !! | TCGTTTGTATTTCTTTTCAT+AGG | - | chr5_3:5224437-5224456 | Msa0793240:three_prime_UTR | 25.0% |
| ! | GAAATTCATTCACTAAATAC+AGG | + | chr5_3:5224498-5224517 | None:intergenic | 25.0% |
| ! | TTGTGACAGGATTAAATTTA+TGG | - | chr5_3:5224753-5224772 | Msa0793240:intron | 25.0% |
| ! | ATTACACAACAATCAACTTT+AGG | + | chr5_3:5225120-5225139 | None:intergenic | 25.0% |
| ! | GATGAAATACATACAATTGT+AGG | + | chr5_3:5225435-5225454 | None:intergenic | 25.0% |
| !!! | ATTAAGTTCTCTCTTTTTTG+TGG | - | chr5_3:5225483-5225502 | Msa0793240:intron | 25.0% |
| !! | TTATGTTACTCTAGTGATTT+TGG | - | chr5_3:5225898-5225917 | Msa0793240:exon | 25.0% |
| !! | TATGTTACTCTAGTGATTTT+GGG | - | chr5_3:5225899-5225918 | Msa0793240:exon | 25.0% |
| !! | GAGTTTCGTATTTTCTAATT+AGG | - | chr5_3:5225954-5225973 | Msa0793240:five_prime_UTR | 25.0% |
| ! | AAAAATCTCAAAGATGATGA+TGG | + | chr5_3:5224406-5224425 | None:intergenic | 25.0% |
| !! | TCGTTTGTATTTCTTTTCAT+AGG | - | chr5_3:5224437-5224456 | Msa0793240:three_prime_UTR | 25.0% |
| ! | GAAATTCATTCACTAAATAC+AGG | + | chr5_3:5224498-5224517 | None:intergenic | 25.0% |
| ! | TTGTGACAGGATTAAATTTA+TGG | - | chr5_3:5224753-5224772 | Msa0793240:intron | 25.0% |
| ! | ATTACACAACAATCAACTTT+AGG | + | chr5_3:5225120-5225139 | None:intergenic | 25.0% |
| ! | GATGAAATACATACAATTGT+AGG | + | chr5_3:5225435-5225454 | None:intergenic | 25.0% |
| !!! | ATTAAGTTCTCTCTTTTTTG+TGG | - | chr5_3:5225483-5225502 | Msa0793240:intron | 25.0% |
| !! | TTATGTTACTCTAGTGATTT+TGG | - | chr5_3:5225898-5225917 | Msa0793240:exon | 25.0% |
| !! | TATGTTACTCTAGTGATTTT+GGG | - | chr5_3:5225899-5225918 | Msa0793240:exon | 25.0% |
| !! | GAGTTTCGTATTTTCTAATT+AGG | - | chr5_3:5225954-5225973 | Msa0793240:five_prime_UTR | 25.0% |
| AGTGAGATTGAATAGAATAG+AGG | + | chr5_3:5224275-5224294 | None:intergenic | 30.0% | |
| AAGAAGAGAGAACTAAAAGA+AGG | + | chr5_3:5224318-5224337 | None:intergenic | 30.0% | |
| ! | TTATGTTGTTTGTGTTCTGT+TGG | - | chr5_3:5224698-5224717 | Msa0793240:intron | 30.0% |
| !!! | TTATTGTTTTTGGTTGCTGA+TGG | - | chr5_3:5224893-5224912 | Msa0793240:CDS | 30.0% |
| AAATTGAGAATGGAATGTTG+TGG | - | chr5_3:5224997-5225016 | Msa0793240:CDS | 30.0% | |
| AATTGAGAATGGAATGTTGT+GGG | - | chr5_3:5224998-5225017 | Msa0793240:CDS | 30.0% | |
| TGTAATGTGATTATTTGCAG+TGG | - | chr5_3:5225134-5225153 | Msa0793240:intron | 30.0% | |
| GTAATGTGATTATTTGCAGT+GGG | - | chr5_3:5225135-5225154 | Msa0793240:intron | 30.0% | |
| AACAATATCAACCACTTTGA+CGG | + | chr5_3:5225245-5225264 | None:intergenic | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | chr5_3:5225254-5225273 | Msa0793240:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | chr5_3:5225292-5225311 | None:intergenic | 30.0% | |
| !! | AATCAATGTTGCAGTTTTGT+TGG | - | chr5_3:5225731-5225750 | Msa0793240:intron | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | - | chr5_3:5225732-5225751 | Msa0793240:intron | 30.0% |
| AGTGAGATTGAATAGAATAG+AGG | + | chr5_3:5224275-5224294 | None:intergenic | 30.0% | |
| AAGAAGAGAGAACTAAAAGA+AGG | + | chr5_3:5224318-5224337 | None:intergenic | 30.0% | |
| ! | TTATGTTGTTTGTGTTCTGT+TGG | - | chr5_3:5224698-5224717 | Msa0793240:intron | 30.0% |
| !!! | TTATTGTTTTTGGTTGCTGA+TGG | - | chr5_3:5224893-5224912 | Msa0793240:CDS | 30.0% |
| AAATTGAGAATGGAATGTTG+TGG | - | chr5_3:5224997-5225016 | Msa0793240:CDS | 30.0% | |
| AATTGAGAATGGAATGTTGT+GGG | - | chr5_3:5224998-5225017 | Msa0793240:CDS | 30.0% | |
| TGTAATGTGATTATTTGCAG+TGG | - | chr5_3:5225134-5225153 | Msa0793240:intron | 30.0% | |
| GTAATGTGATTATTTGCAGT+GGG | - | chr5_3:5225135-5225154 | Msa0793240:intron | 30.0% | |
| AACAATATCAACCACTTTGA+CGG | + | chr5_3:5225245-5225264 | None:intergenic | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | chr5_3:5225254-5225273 | Msa0793240:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | chr5_3:5225292-5225311 | None:intergenic | 30.0% | |
| !! | AATCAATGTTGCAGTTTTGT+TGG | - | chr5_3:5225731-5225750 | Msa0793240:intron | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | - | chr5_3:5225732-5225751 | Msa0793240:intron | 30.0% |
| GAGATTGAATAGAATAGAGG+TGG | + | chr5_3:5224272-5224291 | None:intergenic | 35.0% | |
| ATTTACCTGTAAGAAGATCC+TGG | + | chr5_3:5224383-5224402 | None:intergenic | 35.0% | |
| CTTTGCTGACGAATTTCTTT+AGG | - | chr5_3:5224939-5224958 | Msa0793240:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | chr5_3:5225364-5225383 | None:intergenic | 35.0% |
| ATTGTAGGTCCTTGAGTTTA+GGG | + | chr5_3:5225420-5225439 | None:intergenic | 35.0% | |
| AATTGTAGGTCCTTGAGTTT+AGG | + | chr5_3:5225421-5225440 | None:intergenic | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr5_3:5225518-5225537 | Msa0793240:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | - | chr5_3:5225733-5225752 | Msa0793240:intron | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | chr5_3:5225818-5225837 | None:intergenic | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | chr5_3:5225818-5225837 | Msa0793240:intron | 35.0% |
| GCACGTTTAGTTATCATGTT+AGG | - | chr5_3:5225863-5225882 | Msa0793240:intron | 35.0% | |
| !!! | CTCTAGTGATTTTGGGATTT+TGG | - | chr5_3:5225906-5225925 | Msa0793240:exon | 35.0% |
| ! | AGCTGATAATGAAGAGTTCA+AGG | + | chr5_3:5224236-5224255 | None:intergenic | 35.0% |
| GAGATTGAATAGAATAGAGG+TGG | + | chr5_3:5224272-5224291 | None:intergenic | 35.0% | |
| ATTTACCTGTAAGAAGATCC+TGG | + | chr5_3:5224383-5224402 | None:intergenic | 35.0% | |
| CTTTGCTGACGAATTTCTTT+AGG | - | chr5_3:5224939-5224958 | Msa0793240:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | chr5_3:5225364-5225383 | None:intergenic | 35.0% |
| ATTGTAGGTCCTTGAGTTTA+GGG | + | chr5_3:5225420-5225439 | None:intergenic | 35.0% | |
| AATTGTAGGTCCTTGAGTTT+AGG | + | chr5_3:5225421-5225440 | None:intergenic | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr5_3:5225518-5225537 | Msa0793240:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | - | chr5_3:5225733-5225752 | Msa0793240:intron | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | chr5_3:5225818-5225837 | None:intergenic | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | chr5_3:5225818-5225837 | Msa0793240:intron | 35.0% |
| GCACGTTTAGTTATCATGTT+AGG | - | chr5_3:5225863-5225882 | Msa0793240:intron | 35.0% | |
| !!! | CTCTAGTGATTTTGGGATTT+TGG | - | chr5_3:5225906-5225925 | Msa0793240:exon | 35.0% |
| TGTAACCATGCTTGTATACC+AGG | - | chr5_3:5224362-5224381 | Msa0793240:three_prime_UTR | 40.0% | |
| AAGATCCTGGTATACAAGCA+TGG | + | chr5_3:5224370-5224389 | None:intergenic | 40.0% | |
| GTATACCAGGATCTTCTTAC+AGG | - | chr5_3:5224375-5224394 | Msa0793240:three_prime_UTR | 40.0% | |
| TGTTGTGTTTGTGTTGTGAC+AGG | - | chr5_3:5224740-5224759 | Msa0793240:intron | 40.0% | |
| CATTCTCAATTTCCTTGCAG+GGG | + | chr5_3:5224989-5225008 | None:intergenic | 40.0% | |
| CCATTCTCAATTTCCTTGCA+GGG | + | chr5_3:5224990-5225009 | None:intergenic | 40.0% | |
| TCCATTCTCAATTTCCTTGC+AGG | + | chr5_3:5224991-5225010 | None:intergenic | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | chr5_3:5225145-5225164 | Msa0793240:intron | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr5_3:5225517-5225536 | Msa0793240:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr5_3:5225519-5225538 | Msa0793240:intron | 40.0% |
| CTTCTTAACTTATGCCCCAA+GGG | + | chr5_3:5225536-5225555 | None:intergenic | 40.0% | |
| TCTTCTTAACTTATGCCCCA+AGG | + | chr5_3:5225537-5225556 | None:intergenic | 40.0% | |
| !! | TCTCTTTAACTTGTGCCCTT+AGG | - | chr5_3:5225657-5225676 | Msa0793240:intron | 40.0% |
| !! | CTCTTTAACTTGTGCCCTTA+GGG | - | chr5_3:5225658-5225677 | Msa0793240:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr5_3:5225675-5225694 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr5_3:5225676-5225695 | None:intergenic | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | chr5_3:5225781-5225800 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | chr5_3:5225778-5225797 | Msa0793240:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | chr5_3:5225782-5225801 | Msa0793240:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | chr5_3:5225810-5225829 | None:intergenic | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | chr5_3:5225837-5225856 | None:intergenic | 40.0% | |
| TGTAACCATGCTTGTATACC+AGG | - | chr5_3:5224362-5224381 | Msa0793240:three_prime_UTR | 40.0% | |
| AAGATCCTGGTATACAAGCA+TGG | + | chr5_3:5224370-5224389 | None:intergenic | 40.0% | |
| GTATACCAGGATCTTCTTAC+AGG | - | chr5_3:5224375-5224394 | Msa0793240:three_prime_UTR | 40.0% | |
| TGTTGTGTTTGTGTTGTGAC+AGG | - | chr5_3:5224740-5224759 | Msa0793240:intron | 40.0% | |
| CATTCTCAATTTCCTTGCAG+GGG | + | chr5_3:5224989-5225008 | None:intergenic | 40.0% | |
| CCATTCTCAATTTCCTTGCA+GGG | + | chr5_3:5224990-5225009 | None:intergenic | 40.0% | |
| TCCATTCTCAATTTCCTTGC+AGG | + | chr5_3:5224991-5225010 | None:intergenic | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | chr5_3:5225145-5225164 | Msa0793240:intron | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr5_3:5225517-5225536 | Msa0793240:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr5_3:5225519-5225538 | Msa0793240:intron | 40.0% |
| CTTCTTAACTTATGCCCCAA+GGG | + | chr5_3:5225536-5225555 | None:intergenic | 40.0% | |
| TCTTCTTAACTTATGCCCCA+AGG | + | chr5_3:5225537-5225556 | None:intergenic | 40.0% | |
| !! | TCTCTTTAACTTGTGCCCTT+AGG | - | chr5_3:5225657-5225676 | Msa0793240:intron | 40.0% |
| !! | CTCTTTAACTTGTGCCCTTA+GGG | - | chr5_3:5225658-5225677 | Msa0793240:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr5_3:5225675-5225694 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr5_3:5225676-5225695 | None:intergenic | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | chr5_3:5225781-5225800 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | chr5_3:5225778-5225797 | Msa0793240:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | chr5_3:5225782-5225801 | Msa0793240:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | chr5_3:5225810-5225829 | None:intergenic | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | chr5_3:5225837-5225856 | None:intergenic | 40.0% | |
| CCCTGCAAGGAAATTGAGAA+TGG | - | chr5_3:5224987-5225006 | Msa0793240:CDS | 45.0% | |
| GAATGGAATGTTGTGGGAAG+TGG | - | chr5_3:5225004-5225023 | Msa0793240:CDS | 45.0% | |
| GGAGCAGTGGATGTGAATAT+TGG | - | chr5_3:5225166-5225185 | Msa0793240:intron | 45.0% | |
| TGATGATCAAGCCGTCAAAG+TGG | - | chr5_3:5225231-5225250 | Msa0793240:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | chr5_3:5225261-5225280 | Msa0793240:CDS | 45.0% | |
| GTTCCTTCTCCCTAAACTCA+AGG | - | chr5_3:5225408-5225427 | Msa0793240:intron | 45.0% | |
| CTACTTTGCCTATGGCTTGA+AGG | - | chr5_3:5225826-5225845 | Msa0793240:intron | 45.0% | |
| CCCTGCAAGGAAATTGAGAA+TGG | - | chr5_3:5224987-5225006 | Msa0793240:CDS | 45.0% | |
| GAATGGAATGTTGTGGGAAG+TGG | - | chr5_3:5225004-5225023 | Msa0793240:CDS | 45.0% | |
| GGAGCAGTGGATGTGAATAT+TGG | - | chr5_3:5225166-5225185 | Msa0793240:intron | 45.0% | |
| TGATGATCAAGCCGTCAAAG+TGG | - | chr5_3:5225231-5225250 | Msa0793240:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | chr5_3:5225261-5225280 | Msa0793240:CDS | 45.0% | |
| GTTCCTTCTCCCTAAACTCA+AGG | - | chr5_3:5225408-5225427 | Msa0793240:intron | 45.0% | |
| CTACTTTGCCTATGGCTTGA+AGG | - | chr5_3:5225826-5225845 | Msa0793240:intron | 45.0% | |
| GGAATGTTGTGGGAAGTGGA+AGG | - | chr5_3:5225008-5225027 | Msa0793240:CDS | 50.0% | |
| GTTGTGGGAAGTGGAAGGAA+AGG | - | chr5_3:5225013-5225032 | Msa0793240:CDS | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+AGG | - | chr5_3:5225018-5225037 | Msa0793240:CDS | 50.0% | |
| GGTCCTTGAGTTTAGGGAGA+AGG | + | chr5_3:5225414-5225433 | None:intergenic | 50.0% | |
| GGAATGTTGTGGGAAGTGGA+AGG | - | chr5_3:5225008-5225027 | Msa0793240:CDS | 50.0% | |
| GTTGTGGGAAGTGGAAGGAA+AGG | - | chr5_3:5225013-5225032 | Msa0793240:CDS | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+AGG | - | chr5_3:5225018-5225037 | Msa0793240:CDS | 50.0% | |
| GGTCCTTGAGTTTAGGGAGA+AGG | + | chr5_3:5225414-5225433 | None:intergenic | 50.0% | |
| CTCTGACTCATTCCCCTGCA+AGG | - | chr5_3:5224974-5224993 | Msa0793240:CDS | 55.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | chr5_3:5225153-5225172 | Msa0793240:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCAG+AGG | - | chr5_3:5225186-5225205 | Msa0793240:intron | 55.0% |
| GGTGCTAACCCTTCTGCAGA+GGG | - | chr5_3:5225187-5225206 | Msa0793240:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | chr5_3:5225752-5225771 | Msa0793240:intron | 55.0% |
| CTCTGACTCATTCCCCTGCA+AGG | - | chr5_3:5224974-5224993 | Msa0793240:CDS | 55.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | chr5_3:5225153-5225172 | Msa0793240:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCAG+AGG | - | chr5_3:5225186-5225205 | Msa0793240:intron | 55.0% |
| GGTGCTAACCCTTCTGCAGA+GGG | - | chr5_3:5225187-5225206 | Msa0793240:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | chr5_3:5225752-5225771 | Msa0793240:intron | 55.0% |
| GCTAACCCTTCTGCAGAGGG+TGG | - | chr5_3:5225190-5225209 | Msa0793240:intron | 60.0% | |
| CGTCTCCACCCTCTGCAGAA+GGG | + | chr5_3:5225198-5225217 | None:intergenic | 60.0% | |
| TCGTCTCCACCCTCTGCAGA+AGG | + | chr5_3:5225199-5225218 | None:intergenic | 60.0% | |
| TTCTGCAGAGGGTGGAGACG+AGG | - | chr5_3:5225198-5225217 | Msa0793240:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+CGG | - | chr5_3:5225205-5225224 | Msa0793240:intron | 60.0% | |
| GCTAACCCTTCTGCAGAGGG+TGG | - | chr5_3:5225190-5225209 | Msa0793240:intron | 60.0% | |
| CGTCTCCACCCTCTGCAGAA+GGG | + | chr5_3:5225198-5225217 | None:intergenic | 60.0% | |
| TCGTCTCCACCCTCTGCAGA+AGG | + | chr5_3:5225199-5225218 | None:intergenic | 60.0% | |
| TTCTGCAGAGGGTGGAGACG+AGG | - | chr5_3:5225198-5225217 | Msa0793240:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+CGG | - | chr5_3:5225205-5225224 | Msa0793240:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5224234 | 5226051 | 5224234 | ID=Msa0793240;Name=Msa0793240 |
| chr5_3 | mRNA | 5224234 | 5226051 | 5224234 | ID=Msa0793240-mRNA-1;Parent=Msa0793240;Name=Msa0793240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=135|1|1|1|0.66|0.75|4|283|138 |
| chr5_3 | exon | 5224234 | 5224540 | 5224234 | ID=Msa0793240-mRNA-1:exon:2036;Parent=Msa0793240-mRNA-1 |
| chr5_3 | exon | 5224841 | 5225131 | 5224841 | ID=Msa0793240-mRNA-1:exon:2035;Parent=Msa0793240-mRNA-1 |
| chr5_3 | exon | 5225251 | 5225324 | 5225251 | ID=Msa0793240-mRNA-1:exon:2034;Parent=Msa0793240-mRNA-1 |
| chr5_3 | exon | 5225889 | 5226051 | 5225889 | ID=Msa0793240-mRNA-1:exon:2033;Parent=Msa0793240-mRNA-1 |
| chr5_3 | five_prime_UTR | 5225917 | 5226051 | 5225917 | ID=Msa0793240-mRNA-1:five_prime_utr;Parent=Msa0793240-mRNA-1 |
| chr5_3 | CDS | 5225889 | 5225916 | 5225889 | ID=Msa0793240-mRNA-1:cds;Parent=Msa0793240-mRNA-1 |
| chr5_3 | CDS | 5225251 | 5225324 | 5225251 | ID=Msa0793240-mRNA-1:cds;Parent=Msa0793240-mRNA-1 |
| chr5_3 | CDS | 5224841 | 5225131 | 5224841 | ID=Msa0793240-mRNA-1:cds;Parent=Msa0793240-mRNA-1 |
| chr5_3 | CDS | 5224517 | 5224540 | 5224517 | ID=Msa0793240-mRNA-1:cds;Parent=Msa0793240-mRNA-1 |
| chr5_3 | three_prime_UTR | 5224234 | 5224516 | 5224234 | ID=Msa0793240-mRNA-1:three_prime_utr;Parent=Msa0793240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
