AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0806200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806200 MtrunA17_Chr5g0414061 95.434 438 16 2 1 438 12 445 0.0 874
Msa0806200 MtrunA17_Chr5g0414041 68.764 445 133 5 1 442 3 444 0.0 599
Msa0806200 MtrunA17_Chr5g0414091 63.182 440 150 6 3 435 1 435 0.0 546
Msa0806200 MtrunA17_Chr5g0414051 60.386 414 140 7 36 442 37 433 2.89e-177 502
Msa0806200 MtrunA17_Chr3g0140371 61.749 366 129 5 77 438 9 367 9.05e-170 481
Msa0806200 MtrunA17_Chr8g0391481 58.400 375 143 7 66 432 4 373 8.53e-159 453
Msa0806200 MtrunA17_Chr7g0226991 53.518 398 174 7 41 433 13 404 1.64e-152 438
Msa0806200 MtrunA17_Chr8g0347321 38.322 441 248 11 6 431 8 439 3.95e-102 311
Msa0806200 MtrunA17_Chr6g0456691 41.644 365 193 10 86 442 78 430 1.14e-99 305
Msa0806200 MtrunA17_Chr5g0414081 67.662 201 60 3 237 433 2 201 5.45e-98 292
Msa0806200 MtrunA17_Chr8g0387921 39.416 411 232 10 28 431 19 419 2.99e-97 298
Msa0806200 MtrunA17_Chr6g0451321 34.858 459 252 12 13 439 22 465 3.80e-89 279
Msa0806200 MtrunA17_Chr6g0456681 37.188 441 236 15 1 432 1 409 4.38e-86 269
Msa0806200 MtrunA17_Chr2g0283851 38.764 356 192 12 91 433 60 402 3.99e-79 251
Msa0806200 MtrunA17_Chr1g0188191 35.732 403 224 13 51 433 196 583 1.79e-70 233
Msa0806200 MtrunA17_Chr6g0476041 33.333 414 237 13 40 433 122 516 4.95e-67 223
Msa0806200 MtrunA17_Chr7g0221281 38.525 244 136 7 195 432 2 237 3.04e-55 184
Msa0806200 MtrunA17_Chr7g0259711 32.065 368 210 17 84 433 89 434 7.73e-49 172
Msa0806200 MtrunA17_Chr2g0287901 33.693 371 203 15 84 435 95 441 4.97e-48 171
Msa0806200 MtrunA17_Chr8g0384151 30.457 394 227 14 62 441 66 426 3.99e-44 159
Msa0806200 MtrunA17_Chr1g0175671 32.791 369 203 17 85 433 169 512 4.78e-44 161
Msa0806200 MtrunA17_Chr4g0070341 31.144 411 220 16 45 431 100 471 1.38e-43 159
Msa0806200 MtrunA17_Chr7g0258851 31.347 386 224 15 59 427 222 583 1.25e-42 158
Msa0806200 MtrunA17_Chr4g0071391 32.418 364 204 15 85 431 108 446 9.35e-42 154
Msa0806200 MtrunA17_Chr5g0430371 30.137 365 225 12 76 427 48 395 1.52e-41 152
Msa0806200 MtrunA17_Chr4g0068111 27.230 426 251 18 29 431 64 453 1.25e-40 150
Msa0806200 MtrunA17_Chr8g0384421 28.293 410 222 15 60 431 97 472 2.94e-40 150
Msa0806200 MtrunA17_Chr3g0105301 31.476 359 206 15 83 427 40 372 8.28e-40 146
Msa0806200 MtrunA17_Chr4g0005491 30.518 367 217 14 84 431 60 407 1.93e-39 146
Msa0806200 MtrunA17_Chr5g0413271 29.155 367 224 14 78 433 137 478 1.10e-38 145
Msa0806200 MtrunA17_Chr8g0368461 29.474 380 212 17 84 432 176 530 1.39e-38 146
Msa0806200 MtrunA17_Chr7g0221271 36.410 195 109 6 28 214 18 205 1.97e-38 138
Msa0806200 MtrunA17_Chr1g0213281 29.737 380 222 16 83 440 172 528 9.87e-38 144
Msa0806200 MtrunA17_Chr3g0126021 28.966 435 255 17 21 436 65 464 1.55e-37 142
Msa0806200 MtrunA17_Chr7g0269991 30.966 352 210 15 86 428 137 464 1.82e-37 142
Msa0806200 MtrunA17_Chr4g0006991 29.609 358 226 12 85 431 85 427 3.53e-37 140
Msa0806200 MtrunA17_Chr7g0243301 29.700 367 220 15 84 431 62 409 4.26e-37 140
Msa0806200 MtrunA17_Chr7g0242701 30.362 359 222 14 85 431 85 427 8.67e-37 139
Msa0806200 MtrunA17_Chr2g0325481 30.682 352 209 15 79 427 43 362 9.66e-37 138
Msa0806200 MtrunA17_Chr4g0045941 30.925 346 203 13 83 424 30 343 3.77e-36 136
Msa0806200 MtrunA17_Chr4g0045951 30.398 352 209 13 77 424 36 355 4.02e-36 136
Msa0806200 MtrunA17_Chr3g0085071 29.888 358 205 15 85 433 45 365 1.27e-35 135
Msa0806200 MtrunA17_Chr3g0113671 28.997 369 212 16 83 427 103 445 6.45e-35 135
Msa0806200 MtrunA17_Chr3g0091031 29.661 354 205 12 86 431 31 348 7.64e-35 132
Msa0806200 MtrunA17_Chr8g0360521 26.703 367 224 10 86 433 71 411 1.28e-34 133
Msa0806200 MtrunA17_Chr1g0171171 27.952 415 243 17 30 431 4 375 1.31e-34 132
Msa0806200 MtrunA17_Chr2g0314801 30.028 363 218 14 76 431 20 353 1.72e-34 131
Msa0806200 MtrunA17_Chr3g0085081 30.000 370 197 15 79 431 24 348 3.71e-34 130
Msa0806200 MtrunA17_Chr2g0283581 30.748 361 217 13 73 431 29 358 3.15e-33 128
Msa0806200 MtrunA17_Chr3g0114101 27.494 451 269 18 5 428 8 427 3.52e-33 129
Msa0806200 MtrunA17_Chr2g0314791 29.014 355 207 12 81 427 24 341 4.65e-33 127
Msa0806200 MtrunA17_Chr3g0097891 28.653 349 215 9 83 427 28 346 6.28e-33 127
Msa0806200 MtrunA17_Chr1g0210771 26.702 382 231 15 59 427 33 378 1.09e-32 127
Msa0806200 MtrunA17_Chr5g0437601 27.809 356 227 13 86 428 83 421 1.58e-32 127
Msa0806200 MtrunA17_Chr6g0455901 27.838 370 221 13 83 429 68 414 4.02e-32 126
Msa0806200 MtrunA17_Chr4g0041011 27.818 417 242 18 20 431 1 363 2.60e-31 123
Msa0806200 MtrunA17_Chr7g0221291 36.585 164 90 5 17 176 15 168 8.33e-30 114
Msa0806200 MtrunA17_Chr4g0005481 26.772 381 228 16 73 431 95 446 1.81e-28 116
Msa0806200 MtrunA17_Chr5g0413851 28.493 365 214 15 73 427 28 355 2.70e-27 112
Msa0806200 MtrunA17_Chr5g0437291 26.882 372 226 15 86 433 165 514 4.96e-27 113
Msa0806200 MtrunA17_Chr4g0049421 25.532 376 219 14 86 431 48 392 8.07e-27 111
Msa0806200 MtrunA17_Chr1g0178081 32.231 242 137 10 27 257 10 235 6.03e-25 105
Msa0806200 MtrunA17_Chr1g0178081 36.283 113 60 4 322 433 243 344 7.57e-13 69.7
Msa0806200 MtrunA17_Chr1g0209921 32.086 187 114 5 82 266 40 215 2.00e-22 96.3
Msa0806200 MtrunA17_Chr4g0057171 51.087 92 38 3 228 319 1 85 4.98e-22 91.3
Msa0806200 MtrunA17_Chr7g0275501 48.611 72 29 2 359 430 5 68 3.00e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806200 AT1G70230.1 51.860 430 187 9 9 435 3 415 1.77e-158 454
Msa0806200 AT4G01080.1 41.775 383 207 11 60 437 65 436 7.18e-98 300
Msa0806200 AT1G01430.1 39.018 387 221 8 62 439 75 455 7.49e-97 298
Msa0806200 AT5G15890.1 40.470 383 213 9 53 432 153 523 9.72e-96 298
Msa0806200 AT4G23790.1 37.330 442 251 11 1 431 1 427 3.84e-95 293
Msa0806200 AT4G11090.1 39.110 427 227 11 20 431 17 425 4.90e-95 293
Msa0806200 AT5G15900.1 37.071 437 223 15 18 437 14 415 2.93e-92 286
Msa0806200 AT5G15900.2 37.071 437 223 15 18 437 33 434 7.23e-92 285
Msa0806200 AT3G02440.2 39.377 353 198 8 86 432 135 477 5.35e-90 281
Msa0806200 AT3G02440.1 39.377 353 198 8 86 432 127 469 5.97e-90 281
Msa0806200 AT3G28150.1 35.730 445 241 15 1 433 1 412 5.05e-89 277
Msa0806200 AT4G25360.1 34.739 403 237 12 46 433 135 526 2.52e-69 229
Msa0806200 AT4G25360.2 34.739 403 237 12 46 433 135 526 2.52e-69 229
Msa0806200 AT5G51640.1 34.341 364 218 10 83 433 135 490 5.04e-65 217
Msa0806200 AT5G19160.1 32.973 370 224 11 84 440 97 455 1.13e-49 176
Msa0806200 AT3G06080.2 34.225 374 208 17 86 442 103 455 1.36e-49 175
Msa0806200 AT3G12060.1 32.222 360 202 15 86 427 196 531 3.37e-46 168
Msa0806200 AT5G64020.1 31.267 371 211 13 86 431 57 408 4.02e-46 164
Msa0806200 AT2G30010.1 32.520 369 204 14 83 431 53 396 1.25e-45 163
Msa0806200 AT2G30010.2 32.520 369 204 14 83 431 96 439 2.10e-45 163
Msa0806200 AT1G48880.1 33.058 363 184 14 85 428 114 436 7.87e-45 162
Msa0806200 AT5G06700.1 32.782 363 209 18 86 433 255 597 3.91e-43 160
Msa0806200 AT2G14530.1 29.517 393 228 13 62 431 40 406 4.16e-42 154
Msa0806200 AT5G06230.2 32.620 374 206 17 76 427 11 360 6.69e-42 152
Msa0806200 AT5G06230.1 32.620 374 206 17 76 427 52 401 1.56e-41 152
Msa0806200 AT5G20590.1 32.597 362 197 15 86 427 141 475 1.77e-41 154
Msa0806200 AT3G11570.1 33.065 372 200 17 78 427 71 415 3.32e-41 152
Msa0806200 AT2G37720.1 29.670 364 208 12 86 428 143 479 3.72e-41 153
Msa0806200 AT5G58600.1 29.444 360 221 11 83 431 63 400 5.23e-41 150
Msa0806200 AT3G62390.1 28.747 407 230 17 51 433 104 474 1.55e-39 148
Msa0806200 AT3G14850.2 29.395 347 210 11 86 427 34 350 3.75e-38 142
Msa0806200 AT5G49340.1 28.650 363 221 12 86 431 100 441 5.22e-38 144
Msa0806200 AT5G20680.6 28.325 406 244 13 44 431 81 457 4.02e-37 141
Msa0806200 AT2G38320.1 27.649 387 232 15 69 431 42 404 5.35e-37 140
Msa0806200 AT5G20680.2 28.325 406 244 13 44 431 157 533 1.12e-36 141
Msa0806200 AT5G20680.4 27.340 406 248 12 44 431 175 551 1.40e-36 141
Msa0806200 AT5G20680.1 27.340 406 248 12 44 431 175 551 1.40e-36 141
Msa0806200 AT5G20680.3 27.340 406 248 12 44 431 175 551 1.40e-36 141
Msa0806200 AT5G20680.5 27.340 406 248 12 44 431 175 551 1.40e-36 141
Msa0806200 AT1G60790.1 28.646 384 214 16 72 427 177 528 1.55e-36 141
Msa0806200 AT2G31110.2 30.114 352 200 17 85 427 44 358 4.82e-36 136
Msa0806200 AT3G11030.1 27.978 361 221 12 86 428 106 445 9.06e-36 137
Msa0806200 AT2G42570.1 28.871 381 225 17 60 431 21 364 2.56e-35 134
Msa0806200 AT2G40160.1 27.107 439 253 19 28 433 22 426 3.05e-35 135
Msa0806200 AT2G40160.2 26.620 432 251 18 28 427 22 419 4.27e-35 135
Msa0806200 AT5G01360.2 27.747 364 220 15 85 428 35 375 7.99e-35 133
Msa0806200 AT2G34070.1 27.487 382 242 13 55 431 32 383 8.98e-35 133
Msa0806200 AT2G30900.1 29.070 344 217 9 86 427 43 361 1.21e-34 132
Msa0806200 AT1G73140.1 28.571 371 216 16 78 427 59 401 1.92e-34 133
Msa0806200 AT5G01360.1 28.065 367 215 16 85 428 91 431 2.14e-34 133
Msa0806200 AT2G40320.1 27.681 401 211 20 70 428 56 419 9.31e-34 131
Msa0806200 AT1G29050.1 28.093 388 219 15 60 431 35 378 1.33e-33 130
Msa0806200 AT5G64470.3 29.810 369 207 16 86 431 55 394 3.25e-33 129
Msa0806200 AT5G19160.2 34.818 247 143 8 84 320 97 335 4.28e-33 128
Msa0806200 AT3G55990.1 28.571 371 220 15 85 433 139 486 1.27e-32 129
Msa0806200 AT2G38320.2 27.907 344 202 13 111 431 1 321 1.35e-32 126
Msa0806200 AT5G64470.2 29.333 375 207 17 86 431 55 400 1.16e-31 125
Msa0806200 AT2G40150.1 28.070 399 225 19 67 433 55 423 1.17e-31 125
Msa0806200 AT3G06080.1 35.060 251 135 11 86 321 103 340 1.91e-31 123
Msa0806200 AT1G78710.1 29.917 361 200 17 81 427 31 352 1.26e-30 121
Msa0806200 AT3G54260.1 27.824 363 206 17 86 431 51 374 3.60e-30 120
Msa0806200 AT5G58600.2 30.435 253 154 8 71 319 55 289 9.48e-29 115
Msa0806200 AT5G01620.2 25.613 367 231 14 83 431 107 449 1.21e-28 117
Msa0806200 AT5G01620.1 25.613 367 231 14 83 431 107 449 1.21e-28 117
Msa0806200 AT5G01620.3 25.613 367 231 14 83 431 115 457 1.25e-28 117
Msa0806200 AT3G62390.2 28.826 281 173 10 55 322 108 374 3.92e-28 115
Msa0806200 AT5G06230.3 34.016 244 133 12 76 300 52 286 6.71e-27 110
Msa0806200 AT5G20590.2 33.333 222 122 8 86 292 141 351 8.75e-27 111
Msa0806200 AT2G40160.3 28.772 285 162 10 28 292 22 285 4.70e-25 105
Msa0806200 AT2G31110.3 33.333 204 117 7 85 276 44 240 9.50e-25 103
Msa0806200 AT2G30900.2 32.065 184 118 4 86 268 43 220 1.26e-22 97.4
Msa0806200 AT1G78710.2 37.956 137 78 4 81 214 24 156 7.21e-19 87.0
Msa0806200 AT5G64470.1 28.159 277 164 13 86 342 55 316 2.96e-17 82.8
Msa0806200 AT5G64470.4 28.889 270 157 13 86 335 55 309 5.10e-17 82.0
Msa0806200 AT3G14850.1 25.455 275 171 10 158 427 2 247 2.98e-16 78.6

Find 91 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTAATTACACTGAAAT+AGG 0.136015 5_3:+23722667 Msa0806200:CDS
TTCAAATATAGCTCATTATT+TGG 0.139372 5_3:-23722517 None:intergenic
TCCTATCAATTATGCTATTA+AGG 0.141791 5_3:-23722726 None:intergenic
CCTCCTTCATCTTCTTATTC+AGG 0.166411 5_3:+23721671 Msa0806200:CDS
ATGTATTAAGAAAGGCTTTA+AGG 0.169604 5_3:+23722698 Msa0806200:CDS
ATTGATTGTCCTTGCCATTT+TGG 0.188794 5_3:-23722402 None:intergenic
AGTATTGGATGTAACAAAAT+TGG 0.211311 5_3:+23722969 Msa0806200:CDS
TCACTTCACCTAATGCAAAA+AGG 0.224487 5_3:+23721371 Msa0806200:five_prime_UTR
TTTCTATAAGGCTTAGTCTT+TGG 0.240548 5_3:-23722838 None:intergenic
TTCTTCTCTCCATTTCTATA+AGG 0.257035 5_3:-23722850 None:intergenic
AAAGCCAAAGGCAATGAATT+TGG 0.260071 5_3:+23722931 Msa0806200:CDS
CTTAGTTGGAGAAAAGTAAT+TGG 0.278320 5_3:-23722277 None:intergenic
CCTAAACTTGTGTACCAAAA+TGG 0.283772 5_3:+23722388 Msa0806200:CDS
ATGATTAAGGACACTTTCTT+TGG 0.298875 5_3:-23721411 None:intergenic
TGGAGTAATCACATTGGTTT+TGG 0.299673 5_3:-23722093 None:intergenic
TACAAAGAAGAGACTCTAAT+TGG 0.322908 5_3:-23722345 None:intergenic
GTCTTAATTACACTGAAATA+GGG 0.334111 5_3:+23722668 Msa0806200:CDS
CTTTCCAAATTCATTGCCTT+TGG 0.341956 5_3:-23722935 None:intergenic
ATTGATAGGAGAGGAAATAA+AGG 0.351817 5_3:+23722739 Msa0806200:CDS
ATTCAACTATTTCCTTGTAT+TGG 0.358515 5_3:+23722452 Msa0806200:CDS
AATGGAAAAGGGTTCATATA+AGG 0.359801 5_3:-23723021 None:intergenic
TGTGTTTGTTCTTACTTAGT+TGG 0.369018 5_3:-23722291 None:intergenic
TGAATCATGTTGATGAGAAA+TGG 0.370491 5_3:+23722536 Msa0806200:CDS
TGTGTTCATTGGTGTTTGCC+TGG 0.372187 5_3:+23723078 Msa0806200:CDS
TATAGAAGAAGCATAGTTAT+GGG 0.383441 5_3:-23721551 None:intergenic
AAGACTAAGCCTTATAGAAA+TGG 0.384572 5_3:+23722841 Msa0806200:CDS
GACATGATTGTACTATCAAT+TGG 0.399358 5_3:+23722580 Msa0806200:CDS
CCTATCAATTATGCTATTAA+GGG 0.403903 5_3:-23722725 None:intergenic
AGTGATGTTGATGATGGGTT+TGG 0.406997 5_3:-23721624 None:intergenic
ACCCCATTAAAGAATGGAAA+AGG 0.407132 5_3:-23723033 None:intergenic
AAAGTAATTGGTTCAAACCT+TGG 0.414515 5_3:-23722265 None:intergenic
AAAGTTAAGATTTGAAGTAT+TGG 0.417492 5_3:+23722954 Msa0806200:CDS
GTATAGAAGAAGCATAGTTA+TGG 0.420188 5_3:-23721552 None:intergenic
TTGACTATCTTTATTGGAGA+TGG 0.423356 5_3:+23722221 Msa0806200:CDS
ATAGTACAATCATGTCCATT+TGG 0.433551 5_3:-23722573 None:intergenic
TGCAAAATGATTGTGTTCAT+TGG 0.437679 5_3:+23723067 Msa0806200:CDS
CAATAAAGATAGTCAAAATC+AGG 0.440358 5_3:-23722214 None:intergenic
ACACTTCATTCTTCACTCCT+AGG 0.443349 5_3:-23723159 None:intergenic
GTGATTACTCCAAGGGTGAT+TGG 0.451556 5_3:+23722104 Msa0806200:CDS
GAATCATGTTGATGAGAAAT+GGG 0.457430 5_3:+23722537 Msa0806200:CDS
TAAGGACCTGGATGACCATC+TGG 0.461971 5_3:-23723003 None:intergenic
GGCAAAAGATATGCACCAAA+TGG 0.462882 5_3:+23722558 Msa0806200:CDS
AATGGAGAGAAGAAAGTTGA+AGG 0.470023 5_3:+23722859 Msa0806200:CDS
TTTAGAAATTATAAAGAAGT+GGG 0.470803 5_3:+23723128 Msa0806200:CDS
ATCTCATTCCATGTATCAAT+CGG 0.477028 5_3:-23723102 None:intergenic
GTCTTTCACCCAATCACCCT+TGG 0.479066 5_3:-23722113 None:intergenic
TTAAGACCAGATGGTCATCC+AGG 0.486939 5_3:+23722997 Msa0806200:CDS
TTGATAGGAGAGGAAATAAA+GGG 0.488741 5_3:+23722740 Msa0806200:CDS
AGAGAAGAAAGTTGAAGGAA+TGG 0.493088 5_3:+23722864 Msa0806200:CDS
ATGTTGTATCATTGTACAAA+GGG 0.502439 5_3:-23722144 None:intergenic
AGTCAACGGTATAAGTCTCT+TGG 0.509674 5_3:-23721513 None:intergenic
CCCTTAATAGCATAATTGAT+AGG 0.509822 5_3:+23722725 Msa0806200:CDS
TGATTACTCCAAGGGTGATT+GGG 0.515569 5_3:+23722105 Msa0806200:CDS
TCTTGAACCCCATTAAAGAA+TGG 0.524242 5_3:-23723039 None:intergenic
ATGAGAAGTGATGTTGATGA+TGG 0.527795 5_3:-23721630 None:intergenic
GAAGGTGCTTGGGATAAGGC+TGG 0.529140 5_3:+23722808 Msa0806200:CDS
TGCCTGGACCGATTGATACA+TGG 0.530575 5_3:+23723094 Msa0806200:CDS
GAAAATTGAGATAGAAGAAG+TGG 0.532759 5_3:+23722900 Msa0806200:CDS
CAAATGAATGCAAAATTCCA+AGG 0.537827 5_3:+23722248 Msa0806200:CDS
CTTCCGGCTATTTACCATGA+GGG 0.538180 5_3:+23722616 Msa0806200:CDS
TTGGCTTTGTTAAGACCAGA+TGG 0.544671 5_3:+23722988 Msa0806200:CDS
CCCCATTAAAGAATGGAAAA+GGG 0.551208 5_3:-23723032 None:intergenic
AGAAATTATAAAGAAGTGGG+AGG 0.558622 5_3:+23723131 Msa0806200:CDS
TTCCATGTATCAATCGGTCC+AGG 0.567285 5_3:-23723096 None:intergenic
CTAAAATTGAATCACCCTCA+TGG 0.567926 5_3:-23722630 None:intergenic
GGAAGAAATTGCATGACACA+TGG 0.573080 5_3:+23722187 Msa0806200:CDS
TCACCCTCATGGTAAATAGC+CGG 0.573329 5_3:-23722619 None:intergenic
ATACCTGAATAAGAAGATGA+AGG 0.573731 5_3:-23721674 None:intergenic
TTGTACTATCAATTGGACAT+TGG 0.581516 5_3:+23722587 Msa0806200:CDS
TTGTTGGTGATTCTTTAGCA+AGG 0.595518 5_3:+23722320 Msa0806200:CDS
CACCCTTGGAGTAATCACAT+TGG 0.595685 5_3:-23722099 None:intergenic
AACCAATGTGATTACTCCAA+GGG 0.597083 5_3:+23722097 Msa0806200:CDS
AAACCAATGTGATTACTCCA+AGG 0.602264 5_3:+23722096 Msa0806200:CDS
CATGTTGTATCATTGTACAA+AGG 0.616088 5_3:-23722145 None:intergenic
AGCAAAGAACAAATAGTCAA+CGG 0.617595 5_3:-23721527 None:intergenic
GAAGAAATTGCATGACACAT+GGG 0.618181 5_3:+23722188 Msa0806200:CDS
TGAGAAGTGATGTTGATGAT+GGG 0.620902 5_3:-23721629 None:intergenic
AAAGGGTTCATATAAGGACC+TGG 0.626122 5_3:-23723015 None:intergenic
AATAGCATAATTGATAGGAG+AGG 0.629684 5_3:+23722730 Msa0806200:CDS
AATTGAGATAGAAGAAGTGG+TGG 0.634610 5_3:+23722903 Msa0806200:CDS
GCTTCCGGCTATTTACCATG+AGG 0.639421 5_3:+23722615 Msa0806200:CDS
GTGGTGGCTGCTAAAGCCAA+AGG 0.645087 5_3:+23722919 Msa0806200:CDS
AAGGAATGGATAGTGAGATG+AGG 0.645343 5_3:+23722878 Msa0806200:CDS
CAAGCACCTTCAAAATGATG+TGG 0.645352 5_3:-23722796 None:intergenic
TGTGGTGGCATGATGAAAGA+AGG 0.645471 5_3:+23722166 Msa0806200:CDS
TACAATGATACAACATGTGG+TGG 0.653616 5_3:+23722151 Msa0806200:CDS
ACTTGTGTACCAAAATGGCA+AGG 0.655571 5_3:+23722393 Msa0806200:CDS
CCTGAATAAGAAGATGAAGG+AGG 0.662952 5_3:-23721671 None:intergenic
AGAAGTGGGAGGAACAACCT+AGG 0.672972 5_3:+23723142 Msa0806200:CDS
GATTGGGTGAAAGACACTAG+AGG 0.717181 5_3:+23722121 Msa0806200:CDS
TTGTACAATGATACAACATG+TGG 0.723255 5_3:+23722148 Msa0806200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTCCTTAATTAATT+TGG + chr5_3:23721870-23721889 Msa0806200:intron 10.0%
!!! ATTTTTTTCCTTAATTAATT+TGG + chr5_3:23721870-23721889 Msa0806200:intron 10.0%
!!! TTTTAGAAATTATAAAGAAG+TGG + chr5_3:23723127-23723146 Msa0806200:CDS 15.0%
!! TTTAGAAATTATAAAGAAGT+GGG + chr5_3:23723128-23723147 Msa0806200:CDS 15.0%
!!! TTTTAGAAATTATAAAGAAG+TGG + chr5_3:23723127-23723146 Msa0806200:CDS 15.0%
!! TTTAGAAATTATAAAGAAGT+GGG + chr5_3:23723128-23723147 Msa0806200:CDS 15.0%
!!! TTAGTTTTGATCAATGATTA+AGG - chr5_3:23721427-23721446 None:intergenic 20.0%
!!! GAATTAGTAATCTCAATTTT+TGG - chr5_3:23721605-23721624 None:intergenic 20.0%
!! TTCAAATATAGCTCATTATT+TGG - chr5_3:23722520-23722539 None:intergenic 20.0%
!!! GTTTTATGATGTATTAAGAA+AGG + chr5_3:23722690-23722709 Msa0806200:CDS 20.0%
!!! AAAGTTAAGATTTGAAGTAT+TGG + chr5_3:23722954-23722973 Msa0806200:CDS 20.0%
!!! TTAGTTTTGATCAATGATTA+AGG - chr5_3:23721427-23721446 None:intergenic 20.0%
!!! GAATTAGTAATCTCAATTTT+TGG - chr5_3:23721605-23721624 None:intergenic 20.0%
!! TTCAAATATAGCTCATTATT+TGG - chr5_3:23722520-23722539 None:intergenic 20.0%
!!! GTTTTATGATGTATTAAGAA+AGG + chr5_3:23722690-23722709 Msa0806200:CDS 20.0%
!!! AAAGTTAAGATTTGAAGTAT+TGG + chr5_3:23722954-23722973 Msa0806200:CDS 20.0%
!!! TGAAAGTTTTTTTGACAAGT+AGG - chr5_3:23721354-23721373 None:intergenic 25.0%
! ACAAAAAGAAGCTATGAAAA+TGG + chr5_3:23721451-23721470 Msa0806200:exon 25.0%
! CAAAAAGAAGCTATGAAAAT+GGG + chr5_3:23721452-23721471 Msa0806200:exon 25.0%
!! TATAGAAGAAGCATAGTTAT+GGG - chr5_3:23721554-23721573 None:intergenic 25.0%
!!! ATTTTTGGAGTTTGAGAAAA+AGG - chr5_3:23721590-23721609 None:intergenic 25.0%
! TTCGAACACCAAATTAATTA+AGG - chr5_3:23721881-23721900 None:intergenic 25.0%
!!! ATGATGATTGTTTGTTTTGT+TGG + chr5_3:23722026-23722045 Msa0806200:intron 25.0%
! ATGTTGTATCATTGTACAAA+GGG - chr5_3:23722147-23722166 None:intergenic 25.0%
! CAATAAAGATAGTCAAAATC+AGG - chr5_3:23722217-23722236 None:intergenic 25.0%
!!! CTGATTTTGACTATCTTTAT+TGG + chr5_3:23722215-23722234 Msa0806200:CDS 25.0%
! ATTCAACTATTTCCTTGTAT+TGG + chr5_3:23722452-23722471 Msa0806200:CDS 25.0%
! TCAATACCTTGTACTAAAAA+TGG - chr5_3:23722481-23722500 None:intergenic 25.0%
! GTCTTAATTACACTGAAATA+GGG + chr5_3:23722668-23722687 Msa0806200:CDS 25.0%
! ATGTATTAAGAAAGGCTTTA+AGG + chr5_3:23722698-23722717 Msa0806200:CDS 25.0%
! CCTATCAATTATGCTATTAA+GGG - chr5_3:23722728-23722747 None:intergenic 25.0%
! TCCTATCAATTATGCTATTA+AGG - chr5_3:23722729-23722748 None:intergenic 25.0%
!! AGTATTGGATGTAACAAAAT+TGG + chr5_3:23722969-23722988 Msa0806200:CDS 25.0%
!!! TGAAAGTTTTTTTGACAAGT+AGG - chr5_3:23721354-23721373 None:intergenic 25.0%
! ACAAAAAGAAGCTATGAAAA+TGG + chr5_3:23721451-23721470 Msa0806200:exon 25.0%
! CAAAAAGAAGCTATGAAAAT+GGG + chr5_3:23721452-23721471 Msa0806200:exon 25.0%
!! TATAGAAGAAGCATAGTTAT+GGG - chr5_3:23721554-23721573 None:intergenic 25.0%
!!! ATTTTTGGAGTTTGAGAAAA+AGG - chr5_3:23721590-23721609 None:intergenic 25.0%
! TTCGAACACCAAATTAATTA+AGG - chr5_3:23721881-23721900 None:intergenic 25.0%
!!! ATGATGATTGTTTGTTTTGT+TGG + chr5_3:23722026-23722045 Msa0806200:intron 25.0%
! ATGTTGTATCATTGTACAAA+GGG - chr5_3:23722147-23722166 None:intergenic 25.0%
! CAATAAAGATAGTCAAAATC+AGG - chr5_3:23722217-23722236 None:intergenic 25.0%
!!! CTGATTTTGACTATCTTTAT+TGG + chr5_3:23722215-23722234 Msa0806200:CDS 25.0%
! ATTCAACTATTTCCTTGTAT+TGG + chr5_3:23722452-23722471 Msa0806200:CDS 25.0%
! TCAATACCTTGTACTAAAAA+TGG - chr5_3:23722481-23722500 None:intergenic 25.0%
! GTCTTAATTACACTGAAATA+GGG + chr5_3:23722668-23722687 Msa0806200:CDS 25.0%
! ATGTATTAAGAAAGGCTTTA+AGG + chr5_3:23722698-23722717 Msa0806200:CDS 25.0%
! CCTATCAATTATGCTATTAA+GGG - chr5_3:23722728-23722747 None:intergenic 25.0%
! TCCTATCAATTATGCTATTA+AGG - chr5_3:23722729-23722748 None:intergenic 25.0%
!! AGTATTGGATGTAACAAAAT+TGG + chr5_3:23722969-23722988 Msa0806200:CDS 25.0%
!!! ACTTTCTTTGGTGTTTTGTT+GGG - chr5_3:23721402-23721421 None:intergenic 30.0%
ATGATTAAGGACACTTTCTT+TGG - chr5_3:23721414-23721433 None:intergenic 30.0%
AGCAAAGAACAAATAGTCAA+CGG - chr5_3:23721530-23721549 None:intergenic 30.0%
! GTATAGAAGAAGCATAGTTA+TGG - chr5_3:23721555-23721574 None:intergenic 30.0%
ATACCTGAATAAGAAGATGA+AGG - chr5_3:23721677-23721696 None:intergenic 30.0%
CATGTTGTATCATTGTACAA+AGG - chr5_3:23722148-23722167 None:intergenic 30.0%
TTGTACAATGATACAACATG+TGG + chr5_3:23722148-23722167 Msa0806200:CDS 30.0%
TTGACTATCTTTATTGGAGA+TGG + chr5_3:23722221-23722240 Msa0806200:CDS 30.0%
! CTTGGAATTTTGCATTCATT+TGG - chr5_3:23722250-23722269 None:intergenic 30.0%
CAAATGAATGCAAAATTCCA+AGG + chr5_3:23722248-23722267 Msa0806200:CDS 30.0%
! AAAGTAATTGGTTCAAACCT+TGG - chr5_3:23722268-23722287 None:intergenic 30.0%
CTTAGTTGGAGAAAAGTAAT+TGG - chr5_3:23722280-23722299 None:intergenic 30.0%
TGTGTTTGTTCTTACTTAGT+TGG - chr5_3:23722294-23722313 None:intergenic 30.0%
!! AACAAACACATTGCTTTTGT+TGG + chr5_3:23722304-23722323 Msa0806200:CDS 30.0%
TACAAAGAAGAGACTCTAAT+TGG - chr5_3:23722348-23722367 None:intergenic 30.0%
TAAAAATGGAGACCAATACA+AGG - chr5_3:23722467-23722486 None:intergenic 30.0%
! TGAATCATGTTGATGAGAAA+TGG + chr5_3:23722536-23722555 Msa0806200:CDS 30.0%
! GAATCATGTTGATGAGAAAT+GGG + chr5_3:23722537-23722556 Msa0806200:CDS 30.0%
ATAGTACAATCATGTCCATT+TGG - chr5_3:23722576-23722595 None:intergenic 30.0%
GACATGATTGTACTATCAAT+TGG + chr5_3:23722580-23722599 Msa0806200:CDS 30.0%
TTGTACTATCAATTGGACAT+TGG + chr5_3:23722587-23722606 Msa0806200:CDS 30.0%
! ATGAGGGTGATTCAATTTTA+GGG + chr5_3:23722632-23722651 Msa0806200:CDS 30.0%
!!! ATTTTAGGGTGTCATTATTG+TGG + chr5_3:23722646-23722665 Msa0806200:CDS 30.0%
GGTCTTAATTACACTGAAAT+AGG + chr5_3:23722667-23722686 Msa0806200:CDS 30.0%
CCCTTAATAGCATAATTGAT+AGG + chr5_3:23722725-23722744 Msa0806200:CDS 30.0%
AATAGCATAATTGATAGGAG+AGG + chr5_3:23722730-23722749 Msa0806200:CDS 30.0%
ATTGATAGGAGAGGAAATAA+AGG + chr5_3:23722739-23722758 Msa0806200:CDS 30.0%
TTGATAGGAGAGGAAATAAA+GGG + chr5_3:23722740-23722759 Msa0806200:CDS 30.0%
! TTTACACCACATCATTTTGA+AGG + chr5_3:23722790-23722809 Msa0806200:CDS 30.0%
! TTTCTATAAGGCTTAGTCTT+TGG - chr5_3:23722841-23722860 None:intergenic 30.0%
! AAGACTAAGCCTTATAGAAA+TGG + chr5_3:23722841-23722860 Msa0806200:CDS 30.0%
TTCTTCTCTCCATTTCTATA+AGG - chr5_3:23722853-23722872 None:intergenic 30.0%
GAAAATTGAGATAGAAGAAG+TGG + chr5_3:23722900-23722919 Msa0806200:CDS 30.0%
AATGGAAAAGGGTTCATATA+AGG - chr5_3:23723024-23723043 None:intergenic 30.0%
! AACCCTTTTCCATTCTTTAA+TGG + chr5_3:23723030-23723049 Msa0806200:CDS 30.0%
! ACCCTTTTCCATTCTTTAAT+GGG + chr5_3:23723031-23723050 Msa0806200:CDS 30.0%
TGCAAAATGATTGTGTTCAT+TGG + chr5_3:23723067-23723086 Msa0806200:CDS 30.0%
ATCTCATTCCATGTATCAAT+CGG - chr5_3:23723105-23723124 None:intergenic 30.0%
AGAAATTATAAAGAAGTGGG+AGG + chr5_3:23723131-23723150 Msa0806200:CDS 30.0%
!!! ACTTTCTTTGGTGTTTTGTT+GGG - chr5_3:23721402-23721421 None:intergenic 30.0%
ATGATTAAGGACACTTTCTT+TGG - chr5_3:23721414-23721433 None:intergenic 30.0%
AGCAAAGAACAAATAGTCAA+CGG - chr5_3:23721530-23721549 None:intergenic 30.0%
! GTATAGAAGAAGCATAGTTA+TGG - chr5_3:23721555-23721574 None:intergenic 30.0%
ATACCTGAATAAGAAGATGA+AGG - chr5_3:23721677-23721696 None:intergenic 30.0%
CATGTTGTATCATTGTACAA+AGG - chr5_3:23722148-23722167 None:intergenic 30.0%
TTGTACAATGATACAACATG+TGG + chr5_3:23722148-23722167 Msa0806200:CDS 30.0%
TTGACTATCTTTATTGGAGA+TGG + chr5_3:23722221-23722240 Msa0806200:CDS 30.0%
! CTTGGAATTTTGCATTCATT+TGG - chr5_3:23722250-23722269 None:intergenic 30.0%
CAAATGAATGCAAAATTCCA+AGG + chr5_3:23722248-23722267 Msa0806200:CDS 30.0%
! AAAGTAATTGGTTCAAACCT+TGG - chr5_3:23722268-23722287 None:intergenic 30.0%
CTTAGTTGGAGAAAAGTAAT+TGG - chr5_3:23722280-23722299 None:intergenic 30.0%
TGTGTTTGTTCTTACTTAGT+TGG - chr5_3:23722294-23722313 None:intergenic 30.0%
!! AACAAACACATTGCTTTTGT+TGG + chr5_3:23722304-23722323 Msa0806200:CDS 30.0%
TACAAAGAAGAGACTCTAAT+TGG - chr5_3:23722348-23722367 None:intergenic 30.0%
TAAAAATGGAGACCAATACA+AGG - chr5_3:23722467-23722486 None:intergenic 30.0%
! TGAATCATGTTGATGAGAAA+TGG + chr5_3:23722536-23722555 Msa0806200:CDS 30.0%
! GAATCATGTTGATGAGAAAT+GGG + chr5_3:23722537-23722556 Msa0806200:CDS 30.0%
ATAGTACAATCATGTCCATT+TGG - chr5_3:23722576-23722595 None:intergenic 30.0%
GACATGATTGTACTATCAAT+TGG + chr5_3:23722580-23722599 Msa0806200:CDS 30.0%
TTGTACTATCAATTGGACAT+TGG + chr5_3:23722587-23722606 Msa0806200:CDS 30.0%
! ATGAGGGTGATTCAATTTTA+GGG + chr5_3:23722632-23722651 Msa0806200:CDS 30.0%
!!! ATTTTAGGGTGTCATTATTG+TGG + chr5_3:23722646-23722665 Msa0806200:CDS 30.0%
GGTCTTAATTACACTGAAAT+AGG + chr5_3:23722667-23722686 Msa0806200:CDS 30.0%
CCCTTAATAGCATAATTGAT+AGG + chr5_3:23722725-23722744 Msa0806200:CDS 30.0%
AATAGCATAATTGATAGGAG+AGG + chr5_3:23722730-23722749 Msa0806200:CDS 30.0%
ATTGATAGGAGAGGAAATAA+AGG + chr5_3:23722739-23722758 Msa0806200:CDS 30.0%
TTGATAGGAGAGGAAATAAA+GGG + chr5_3:23722740-23722759 Msa0806200:CDS 30.0%
! TTTACACCACATCATTTTGA+AGG + chr5_3:23722790-23722809 Msa0806200:CDS 30.0%
! TTTCTATAAGGCTTAGTCTT+TGG - chr5_3:23722841-23722860 None:intergenic 30.0%
! AAGACTAAGCCTTATAGAAA+TGG + chr5_3:23722841-23722860 Msa0806200:CDS 30.0%
TTCTTCTCTCCATTTCTATA+AGG - chr5_3:23722853-23722872 None:intergenic 30.0%
GAAAATTGAGATAGAAGAAG+TGG + chr5_3:23722900-23722919 Msa0806200:CDS 30.0%
AATGGAAAAGGGTTCATATA+AGG - chr5_3:23723024-23723043 None:intergenic 30.0%
! AACCCTTTTCCATTCTTTAA+TGG + chr5_3:23723030-23723049 Msa0806200:CDS 30.0%
! ACCCTTTTCCATTCTTTAAT+GGG + chr5_3:23723031-23723050 Msa0806200:CDS 30.0%
TGCAAAATGATTGTGTTCAT+TGG + chr5_3:23723067-23723086 Msa0806200:CDS 30.0%
ATCTCATTCCATGTATCAAT+CGG - chr5_3:23723105-23723124 None:intergenic 30.0%
AGAAATTATAAAGAAGTGGG+AGG + chr5_3:23723131-23723150 Msa0806200:CDS 30.0%
TCACTTCACCTAATGCAAAA+AGG + chr5_3:23721371-23721390 Msa0806200:five_prime_UTR 35.0%
CACTTCACCTAATGCAAAAA+GGG + chr5_3:23721372-23721391 Msa0806200:five_prime_UTR 35.0%
!!! CACTTTCTTTGGTGTTTTGT+TGG - chr5_3:23721403-23721422 None:intergenic 35.0%
GAGTTTGAGAAAAAGGTAGA+TGG - chr5_3:23721583-23721602 None:intergenic 35.0%
!! TGAGAAGTGATGTTGATGAT+GGG - chr5_3:23721632-23721651 None:intergenic 35.0%
! ATGAGAAGTGATGTTGATGA+TGG - chr5_3:23721633-23721652 None:intergenic 35.0%
!!! TGGAGTAATCACATTGGTTT+TGG - chr5_3:23722096-23722115 None:intergenic 35.0%
AAACCAATGTGATTACTCCA+AGG + chr5_3:23722096-23722115 Msa0806200:CDS 35.0%
AACCAATGTGATTACTCCAA+GGG + chr5_3:23722097-23722116 Msa0806200:CDS 35.0%
TACAATGATACAACATGTGG+TGG + chr5_3:23722151-23722170 Msa0806200:CDS 35.0%
GAAGAAATTGCATGACACAT+GGG + chr5_3:23722188-23722207 Msa0806200:CDS 35.0%
!! TTGTTGGTGATTCTTTAGCA+AGG + chr5_3:23722320-23722339 Msa0806200:CDS 35.0%
!! CCATTTTGGTACACAAGTTT+AGG - chr5_3:23722391-23722410 None:intergenic 35.0%
CCTAAACTTGTGTACCAAAA+TGG + chr5_3:23722388-23722407 Msa0806200:CDS 35.0%
!! ATTGATTGTCCTTGCCATTT+TGG - chr5_3:23722405-23722424 None:intergenic 35.0%
! GCAAGGACAATCAATTTTCT+AGG + chr5_3:23722410-23722429 Msa0806200:CDS 35.0%
! AGGACAATCAATTTTCTAGG+TGG + chr5_3:23722413-23722432 Msa0806200:CDS 35.0%
!!! TGGTCTCCATTTTTAGTACA+AGG + chr5_3:23722472-23722491 Msa0806200:CDS 35.0%
CTAAAATTGAATCACCCTCA+TGG - chr5_3:23722633-23722652 None:intergenic 35.0%
! CATGAGGGTGATTCAATTTT+AGG + chr5_3:23722631-23722650 Msa0806200:CDS 35.0%
!!! ACATCATTTTGAAGGTGCTT+GGG + chr5_3:23722798-23722817 Msa0806200:CDS 35.0%
AATGGAGAGAAGAAAGTTGA+AGG + chr5_3:23722859-23722878 Msa0806200:CDS 35.0%
AGAGAAGAAAGTTGAAGGAA+TGG + chr5_3:23722864-23722883 Msa0806200:CDS 35.0%
AATTGAGATAGAAGAAGTGG+TGG + chr5_3:23722903-23722922 Msa0806200:CDS 35.0%
AAAGCCAAAGGCAATGAATT+TGG + chr5_3:23722931-23722950 Msa0806200:CDS 35.0%
CTTTCCAAATTCATTGCCTT+TGG - chr5_3:23722938-23722957 None:intergenic 35.0%
CCCCATTAAAGAATGGAAAA+GGG - chr5_3:23723035-23723054 None:intergenic 35.0%
! CCCTTTTCCATTCTTTAATG+GGG + chr5_3:23723032-23723051 Msa0806200:CDS 35.0%
ACCCCATTAAAGAATGGAAA+AGG - chr5_3:23723036-23723055 None:intergenic 35.0%
TCTTGAACCCCATTAAAGAA+TGG - chr5_3:23723042-23723061 None:intergenic 35.0%
TCACTTCACCTAATGCAAAA+AGG + chr5_3:23721371-23721390 Msa0806200:five_prime_UTR 35.0%
CACTTCACCTAATGCAAAAA+GGG + chr5_3:23721372-23721391 Msa0806200:five_prime_UTR 35.0%
!!! CACTTTCTTTGGTGTTTTGT+TGG - chr5_3:23721403-23721422 None:intergenic 35.0%
GAGTTTGAGAAAAAGGTAGA+TGG - chr5_3:23721583-23721602 None:intergenic 35.0%
!! TGAGAAGTGATGTTGATGAT+GGG - chr5_3:23721632-23721651 None:intergenic 35.0%
! ATGAGAAGTGATGTTGATGA+TGG - chr5_3:23721633-23721652 None:intergenic 35.0%
!!! TGGAGTAATCACATTGGTTT+TGG - chr5_3:23722096-23722115 None:intergenic 35.0%
AAACCAATGTGATTACTCCA+AGG + chr5_3:23722096-23722115 Msa0806200:CDS 35.0%
AACCAATGTGATTACTCCAA+GGG + chr5_3:23722097-23722116 Msa0806200:CDS 35.0%
TACAATGATACAACATGTGG+TGG + chr5_3:23722151-23722170 Msa0806200:CDS 35.0%
GAAGAAATTGCATGACACAT+GGG + chr5_3:23722188-23722207 Msa0806200:CDS 35.0%
!! TTGTTGGTGATTCTTTAGCA+AGG + chr5_3:23722320-23722339 Msa0806200:CDS 35.0%
!! CCATTTTGGTACACAAGTTT+AGG - chr5_3:23722391-23722410 None:intergenic 35.0%
CCTAAACTTGTGTACCAAAA+TGG + chr5_3:23722388-23722407 Msa0806200:CDS 35.0%
!! ATTGATTGTCCTTGCCATTT+TGG - chr5_3:23722405-23722424 None:intergenic 35.0%
! GCAAGGACAATCAATTTTCT+AGG + chr5_3:23722410-23722429 Msa0806200:CDS 35.0%
! AGGACAATCAATTTTCTAGG+TGG + chr5_3:23722413-23722432 Msa0806200:CDS 35.0%
!!! TGGTCTCCATTTTTAGTACA+AGG + chr5_3:23722472-23722491 Msa0806200:CDS 35.0%
CTAAAATTGAATCACCCTCA+TGG - chr5_3:23722633-23722652 None:intergenic 35.0%
! CATGAGGGTGATTCAATTTT+AGG + chr5_3:23722631-23722650 Msa0806200:CDS 35.0%
!!! ACATCATTTTGAAGGTGCTT+GGG + chr5_3:23722798-23722817 Msa0806200:CDS 35.0%
AATGGAGAGAAGAAAGTTGA+AGG + chr5_3:23722859-23722878 Msa0806200:CDS 35.0%
AGAGAAGAAAGTTGAAGGAA+TGG + chr5_3:23722864-23722883 Msa0806200:CDS 35.0%
AATTGAGATAGAAGAAGTGG+TGG + chr5_3:23722903-23722922 Msa0806200:CDS 35.0%
AAAGCCAAAGGCAATGAATT+TGG + chr5_3:23722931-23722950 Msa0806200:CDS 35.0%
CTTTCCAAATTCATTGCCTT+TGG - chr5_3:23722938-23722957 None:intergenic 35.0%
CCCCATTAAAGAATGGAAAA+GGG - chr5_3:23723035-23723054 None:intergenic 35.0%
! CCCTTTTCCATTCTTTAATG+GGG + chr5_3:23723032-23723051 Msa0806200:CDS 35.0%
ACCCCATTAAAGAATGGAAA+AGG - chr5_3:23723036-23723055 None:intergenic 35.0%
TCTTGAACCCCATTAAAGAA+TGG - chr5_3:23723042-23723061 None:intergenic 35.0%
AGTCAACGGTATAAGTCTCT+TGG - chr5_3:23721516-23721535 None:intergenic 40.0%
!! AGTGATGTTGATGATGGGTT+TGG - chr5_3:23721627-23721646 None:intergenic 40.0%
CCTGAATAAGAAGATGAAGG+AGG - chr5_3:23721674-23721693 None:intergenic 40.0%
CCTCCTTCATCTTCTTATTC+AGG + chr5_3:23721671-23721690 Msa0806200:CDS 40.0%
TGATTACTCCAAGGGTGATT+GGG + chr5_3:23722105-23722124 Msa0806200:CDS 40.0%
GGAAGAAATTGCATGACACA+TGG + chr5_3:23722187-23722206 Msa0806200:CDS 40.0%
ACTTGTGTACCAAAATGGCA+AGG + chr5_3:23722393-23722412 Msa0806200:CDS 40.0%
GGCAAAAGATATGCACCAAA+TGG + chr5_3:23722558-23722577 Msa0806200:CDS 40.0%
!!! TGGACATTGGTTTTTGCTTC+CGG + chr5_3:23722600-23722619 Msa0806200:CDS 40.0%
CAAGCACCTTCAAAATGATG+TGG - chr5_3:23722799-23722818 None:intergenic 40.0%
!!! CACATCATTTTGAAGGTGCT+TGG + chr5_3:23722797-23722816 Msa0806200:CDS 40.0%
!!! TTTTGAAGGTGCTTGGGATA+AGG + chr5_3:23722804-23722823 Msa0806200:CDS 40.0%
AAGGAATGGATAGTGAGATG+AGG + chr5_3:23722878-23722897 Msa0806200:CDS 40.0%
!! TTGGCTTTGTTAAGACCAGA+TGG + chr5_3:23722988-23723007 Msa0806200:CDS 40.0%
AAAGGGTTCATATAAGGACC+TGG - chr5_3:23723018-23723037 None:intergenic 40.0%
AGTCAACGGTATAAGTCTCT+TGG - chr5_3:23721516-23721535 None:intergenic 40.0%
!! AGTGATGTTGATGATGGGTT+TGG - chr5_3:23721627-23721646 None:intergenic 40.0%
CCTGAATAAGAAGATGAAGG+AGG - chr5_3:23721674-23721693 None:intergenic 40.0%
CCTCCTTCATCTTCTTATTC+AGG + chr5_3:23721671-23721690 Msa0806200:CDS 40.0%
TGATTACTCCAAGGGTGATT+GGG + chr5_3:23722105-23722124 Msa0806200:CDS 40.0%
GGAAGAAATTGCATGACACA+TGG + chr5_3:23722187-23722206 Msa0806200:CDS 40.0%
ACTTGTGTACCAAAATGGCA+AGG + chr5_3:23722393-23722412 Msa0806200:CDS 40.0%
GGCAAAAGATATGCACCAAA+TGG + chr5_3:23722558-23722577 Msa0806200:CDS 40.0%
!!! TGGACATTGGTTTTTGCTTC+CGG + chr5_3:23722600-23722619 Msa0806200:CDS 40.0%
CAAGCACCTTCAAAATGATG+TGG - chr5_3:23722799-23722818 None:intergenic 40.0%
!!! CACATCATTTTGAAGGTGCT+TGG + chr5_3:23722797-23722816 Msa0806200:CDS 40.0%
!!! TTTTGAAGGTGCTTGGGATA+AGG + chr5_3:23722804-23722823 Msa0806200:CDS 40.0%
AAGGAATGGATAGTGAGATG+AGG + chr5_3:23722878-23722897 Msa0806200:CDS 40.0%
!! TTGGCTTTGTTAAGACCAGA+TGG + chr5_3:23722988-23723007 Msa0806200:CDS 40.0%
AAAGGGTTCATATAAGGACC+TGG - chr5_3:23723018-23723037 None:intergenic 40.0%
! GGGTTTGCCCTTTTTGCATT+AGG - chr5_3:23721382-23721401 None:intergenic 45.0%
CACCCTTGGAGTAATCACAT+TGG - chr5_3:23722102-23722121 None:intergenic 45.0%
GTGATTACTCCAAGGGTGAT+TGG + chr5_3:23722104-23722123 Msa0806200:CDS 45.0%
GATTGGGTGAAAGACACTAG+AGG + chr5_3:23722121-23722140 Msa0806200:CDS 45.0%
TGTGGTGGCATGATGAAAGA+AGG + chr5_3:23722166-23722185 Msa0806200:CDS 45.0%
CTTCCGGCTATTTACCATGA+GGG + chr5_3:23722616-23722635 Msa0806200:CDS 45.0%
TCACCCTCATGGTAAATAGC+CGG - chr5_3:23722622-23722641 None:intergenic 45.0%
TTAAGACCAGATGGTCATCC+AGG + chr5_3:23722997-23723016 Msa0806200:CDS 45.0%
! TGTGTTCATTGGTGTTTGCC+TGG + chr5_3:23723078-23723097 Msa0806200:CDS 45.0%
TTCCATGTATCAATCGGTCC+AGG - chr5_3:23723099-23723118 None:intergenic 45.0%
! GGGTTTGCCCTTTTTGCATT+AGG - chr5_3:23721382-23721401 None:intergenic 45.0%
CACCCTTGGAGTAATCACAT+TGG - chr5_3:23722102-23722121 None:intergenic 45.0%
GTGATTACTCCAAGGGTGAT+TGG + chr5_3:23722104-23722123 Msa0806200:CDS 45.0%
GATTGGGTGAAAGACACTAG+AGG + chr5_3:23722121-23722140 Msa0806200:CDS 45.0%
TGTGGTGGCATGATGAAAGA+AGG + chr5_3:23722166-23722185 Msa0806200:CDS 45.0%
CTTCCGGCTATTTACCATGA+GGG + chr5_3:23722616-23722635 Msa0806200:CDS 45.0%
TCACCCTCATGGTAAATAGC+CGG - chr5_3:23722622-23722641 None:intergenic 45.0%
TTAAGACCAGATGGTCATCC+AGG + chr5_3:23722997-23723016 Msa0806200:CDS 45.0%
! TGTGTTCATTGGTGTTTGCC+TGG + chr5_3:23723078-23723097 Msa0806200:CDS 45.0%
TTCCATGTATCAATCGGTCC+AGG - chr5_3:23723099-23723118 None:intergenic 45.0%
!! AATAATATATATATTTAGAT+TGG - chr5_3:23721825-23721844 None:intergenic 5.0%
!! AATAATATATATATTTAGAT+TGG - chr5_3:23721825-23721844 None:intergenic 5.0%
GTCTTTCACCCAATCACCCT+TGG - chr5_3:23722116-23722135 None:intergenic 50.0%
GCTTCCGGCTATTTACCATG+AGG + chr5_3:23722615-23722634 Msa0806200:CDS 50.0%
TAAGGACCTGGATGACCATC+TGG - chr5_3:23723006-23723025 None:intergenic 50.0%
TGCCTGGACCGATTGATACA+TGG + chr5_3:23723094-23723113 Msa0806200:CDS 50.0%
AGAAGTGGGAGGAACAACCT+AGG + chr5_3:23723142-23723161 Msa0806200:CDS 50.0%
GTCTTTCACCCAATCACCCT+TGG - chr5_3:23722116-23722135 None:intergenic 50.0%
GCTTCCGGCTATTTACCATG+AGG + chr5_3:23722615-23722634 Msa0806200:CDS 50.0%
TAAGGACCTGGATGACCATC+TGG - chr5_3:23723006-23723025 None:intergenic 50.0%
TGCCTGGACCGATTGATACA+TGG + chr5_3:23723094-23723113 Msa0806200:CDS 50.0%
AGAAGTGGGAGGAACAACCT+AGG + chr5_3:23723142-23723161 Msa0806200:CDS 50.0%
!! GAAGGTGCTTGGGATAAGGC+TGG + chr5_3:23722808-23722827 Msa0806200:CDS 55.0%
GTGGTGGCTGCTAAAGCCAA+AGG + chr5_3:23722919-23722938 Msa0806200:CDS 55.0%
!! GAAGGTGCTTGGGATAAGGC+TGG + chr5_3:23722808-23722827 Msa0806200:CDS 55.0%
GTGGTGGCTGCTAAAGCCAA+AGG + chr5_3:23722919-23722938 Msa0806200:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 23721335 23723176 23721335 ID=Msa0806200;Name=Msa0806200
chr5_3 mRNA 23721335 23723176 23721335 ID=Msa0806200-mRNA-1;Parent=Msa0806200;Name=Msa0806200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=129|1|0.5|1|1|1|2|0|442
chr5_3 exon 23721335 23721692 23721335 ID=Msa0806200-mRNA-1:exon:9311;Parent=Msa0806200-mRNA-1
chr5_3 exon 23722077 23723176 23722077 ID=Msa0806200-mRNA-1:exon:9312;Parent=Msa0806200-mRNA-1
chr5_3 five_prime_UTR 23721335 23721463 23721335 ID=Msa0806200-mRNA-1:five_prime_utr;Parent=Msa0806200-mRNA-1
chr5_3 CDS 23721464 23721692 23721464 ID=Msa0806200-mRNA-1:cds;Parent=Msa0806200-mRNA-1
chr5_3 CDS 23722077 23723176 23722077 ID=Msa0806200-mRNA-1:cds;Parent=Msa0806200-mRNA-1
Gene Sequence

>Msa0806200

ATGAAAATGGGAACTTCAATATTTTTGAAAGATAAATCAAATTTATTCACCAAGAGACTTATACCGTTGACTATTTGTTCTTTGCTTCCCATAACTATGCTTCTTCTATACTTCTACCATCTACCTTTTTCTCAAACTCCAAAAATTGAGATTACTAATTCCAAACCCATCATCAACATCACTTCTCATTCTTCTCTTTCTGCTTCTCCTCCTTCATCTTCTTATTCAGAAAAGAAAAAATCTTACCAAAACCAATGTGATTACTCCAAGGGTGATTGGGTGAAAGACACTAGAGGCCCTTTGTACAATGATACAACATGTGGTGGCATGATGAAAGAAGGAAGAAATTGCATGACACATGGGAGACCTGATTTTGACTATCTTTATTGGAGATGGAAACCAAATGAATGCAAAATTCCAAGGTTTGAACCAATTACTTTTCTCCAACTAAGTAAGAACAAACACATTGCTTTTGTTGGTGATTCTTTAGCAAGGAACCAATTAGAGTCTCTTCTTTGTATGTTAACAACTGCTTCAATTCCTAAACTTGTGTACCAAAATGGCAAGGACAATCAATTTTCTAGGTGGTACTTTTCTTCATACAATTCAACTATTTCCTTGTATTGGTCTCCATTTTTAGTACAAGGTATTGAAAAATCAAACACAAGTCCAAATAATGAGCTATATTTGAATCATGTTGATGAGAAATGGGCAAAAGATATGCACCAAATGGACATGATTGTACTATCAATTGGACATTGGTTTTTGCTTCCGGCTATTTACCATGAGGGTGATTCAATTTTAGGGTGTCATTATTGTGGTCTTAATTACACTGAAATAGGGTTTTATGATGTATTAAGAAAGGCTTTAAGGACTACCCTTAATAGCATAATTGATAGGAGAGGAAATAAAGGGAATGAAATTGATGTAGTTGTCACAACATTTACACCACATCATTTTGAAGGTGCTTGGGATAAGGCTGGTGCTTGTCCAAAGACTAAGCCTTATAGAAATGGAGAGAAGAAAGTTGAAGGAATGGATAGTGAGATGAGGAAAATTGAGATAGAAGAAGTGGTGGCTGCTAAAGCCAAAGGCAATGAATTTGGAAAGTTAAGATTTGAAGTATTGGATGTAACAAAATTGGCTTTGTTAAGACCAGATGGTCATCCAGGTCCTTATATGAACCCTTTTCCATTCTTTAATGGGGTTCAAGAGTATGTGCAAAATGATTGTGTTCATTGGTGTTTGCCTGGACCGATTGATACATGGAATGAGATATTTTTAGAAATTATAAAGAAGTGGGAGGAACAACCTAGGAGTGAAGAATGA
Protein sequence

>Msa0806200

MKMGTSIFLKDKSNLFTKRLIPLTICSLLPITMLLLYFYHLPFSQTPKIEITNSKPIINITSHSSLSASPPSSSYSEKKKSYQNQCDYSKGDWVKDTRGPLYNDTTCGGMMKEGRNCMTHGRPDFDYLYWRWKPNECKIPRFEPITFLQLSKNKHIAFVGDSLARNQLESLLCMLTTASIPKLVYQNGKDNQFSRWYFSSYNSTISLYWSPFLVQGIEKSNTSPNNELYLNHVDEKWAKDMHQMDMIVLSIGHWFLLPAIYHEGDSILGCHYCGLNYTEIGFYDVLRKALRTTLNSIIDRRGNKGNEIDVVVTTFTPHHFEGAWDKAGACPKTKPYRNGEKKVEGMDSEMRKIEIEEVVAAKAKGNEFGKLRFEVLDVTKLALLRPDGHPGPYMNPFPFFNGVQEYVQNDCVHWCLPGPIDTWNEIFLEIIKKWEEQPRSEE*