Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967700 | XP_003602279.2 | 90.476 | 378 | 29 | 1 | 1 | 371 | 1 | 378 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001460 | Msa0967700 | 0.800541 | 1.373334e-48 | -8.615850e-47 |
| Msa0030400 | Msa0967700 | 0.837438 | 5.198132e-57 | -8.615850e-47 |
| Msa0032120 | Msa0967700 | 0.809804 | 1.578679e-50 | -8.615850e-47 |
| Msa0037820 | Msa0967700 | 0.820134 | 8.052750e-53 | -8.615850e-47 |
| Msa0045660 | Msa0967700 | 0.806846 | 6.747015e-50 | -8.615850e-47 |
| Msa0062750 | Msa0967700 | 0.804821 | 1.796895e-49 | -8.615850e-47 |
| Msa0065690 | Msa0967700 | 0.809892 | 1.511215e-50 | -8.615850e-47 |
| Msa0073820 | Msa0967700 | 0.833360 | 5.577947e-56 | -8.615850e-47 |
| Msa0094700 | Msa0967700 | 0.847704 | 9.773093e-60 | -8.615850e-47 |
| Msa0105600 | Msa0967700 | 0.800621 | 1.322338e-48 | -8.615850e-47 |
| Msa0604700 | Msa0967700 | 0.805715 | 1.167564e-49 | -8.615850e-47 |
| Msa0607300 | Msa0967700 | 0.800079 | 1.705316e-48 | -8.615850e-47 |
| Msa0607440 | Msa0967700 | 0.811111 | 8.243212e-51 | -8.615850e-47 |
| Msa0622690 | Msa0967700 | 0.818865 | 1.568457e-52 | -8.615850e-47 |
| Msa0629500 | Msa0967700 | 0.825234 | 5.237630e-54 | -8.615850e-47 |
| Msa0637850 | Msa0967700 | 0.804108 | 2.530984e-49 | -8.615850e-47 |
| Msa0645780 | Msa0967700 | 0.820431 | 6.882840e-53 | -8.615850e-47 |
| Msa0645820 | Msa0967700 | 0.803557 | 3.293734e-49 | -8.615850e-47 |
| Msa0650360 | Msa0967700 | 0.832745 | 7.931955e-56 | -8.615850e-47 |
| Msa0677840 | Msa0967700 | 0.801123 | 1.044663e-48 | -8.615850e-47 |
| Msa0685540 | Msa0967700 | 0.825358 | 4.896149e-54 | -8.615850e-47 |
| Msa0707780 | Msa0967700 | 0.829356 | 5.390167e-55 | -8.615850e-47 |
| Msa0709480 | Msa0967700 | 0.802184 | 6.326823e-49 | -8.615850e-47 |
| Msa0750380 | Msa0967700 | 0.806484 | 8.043347e-50 | -8.615850e-47 |
| Msa0764020 | Msa0967700 | 0.832649 | 8.377945e-56 | -8.615850e-47 |
| Msa0770430 | Msa0967700 | 0.833032 | 6.732075e-56 | -8.615850e-47 |
| Msa0780140 | Msa0967700 | 0.828336 | 9.513652e-55 | -8.615850e-47 |
| Msa0789800 | Msa0967700 | 0.826599 | 2.483289e-54 | -8.615850e-47 |
| Msa0794460 | Msa0967700 | 0.822414 | 2.399627e-53 | -8.615850e-47 |
| Msa0805940 | Msa0967700 | 0.823197 | 1.576631e-53 | -8.615850e-47 |
| Msa0819440 | Msa0967700 | 0.802001 | 6.902395e-49 | -8.615850e-47 |
| Msa0824140 | Msa0967700 | 0.843717 | 1.179836e-58 | -8.615850e-47 |
| Msa0829430 | Msa0967700 | 0.806904 | 6.559389e-50 | -8.615850e-47 |
| Msa0830720 | Msa0967700 | 0.815428 | 9.292654e-52 | -8.615850e-47 |
| Msa0127080 | Msa0967700 | 0.802446 | 5.588179e-49 | -8.615850e-47 |
| Msa0130800 | Msa0967700 | 0.813941 | 1.983301e-51 | -8.615850e-47 |
| Msa0131390 | Msa0967700 | 0.805805 | 1.117954e-49 | -8.615850e-47 |
| Msa0139050 | Msa0967700 | 0.802091 | 6.613992e-49 | -8.615850e-47 |
| Msa0149500 | Msa0967700 | 0.809612 | 1.736358e-50 | -8.615850e-47 |
| Msa0159750 | Msa0967700 | 0.801501 | 8.739746e-49 | -8.615850e-47 |
| Msa0162030 | Msa0967700 | 0.806924 | 6.493325e-50 | -8.615850e-47 |
| Msa0162050 | Msa0967700 | 0.801029 | 1.091676e-48 | -8.615850e-47 |
| Msa0162070 | Msa0967700 | 0.824597 | 7.406950e-54 | -8.615850e-47 |
| Msa0168900 | Msa0967700 | 0.808342 | 3.246674e-50 | -8.615850e-47 |
| Msa0170680 | Msa0967700 | 0.825167 | 5.431723e-54 | -8.615850e-47 |
| Msa0171780 | Msa0967700 | 0.852710 | 3.860926e-61 | -8.615850e-47 |
| Msa0171930 | Msa0967700 | 0.856405 | 3.288924e-62 | -8.615850e-47 |
| Msa0173760 | Msa0967700 | 0.843946 | 1.025006e-58 | -8.615850e-47 |
| Msa0173850 | Msa0967700 | 0.849367 | 3.383221e-60 | -8.615850e-47 |
| Msa0176710 | Msa0967700 | 0.822230 | 2.647470e-53 | -8.615850e-47 |
| Msa0177490 | Msa0967700 | 0.803357 | 3.624045e-49 | -8.615850e-47 |
| Msa0194570 | Msa0967700 | 0.803601 | 3.224539e-49 | -8.615850e-47 |
| Msa0206940 | Msa0967700 | 0.814492 | 1.498955e-51 | -8.615850e-47 |
| Msa0399720 | Msa0967700 | 0.809229 | 2.097535e-50 | -8.615850e-47 |
| Msa0413740 | Msa0967700 | 0.817156 | 3.815716e-52 | -8.615850e-47 |
| Msa0416000 | Msa0967700 | 0.805351 | 1.392164e-49 | -8.615850e-47 |
| Msa0427090 | Msa0967700 | 0.827761 | 1.308370e-54 | -8.615850e-47 |
| Msa0473490 | Msa0967700 | 0.837015 | 6.668209e-57 | -8.615850e-47 |
| Msa0476180 | Msa0967700 | 0.821908 | 3.144570e-53 | -8.615850e-47 |
| Msa0258380 | Msa0967700 | 0.842253 | 2.895167e-58 | -8.615850e-47 |
| Msa0267340 | Msa0967700 | 0.800304 | 1.534639e-48 | -8.615850e-47 |
| Msa0282070 | Msa0967700 | 0.805134 | 1.545450e-49 | -8.615850e-47 |
| Msa0282090 | Msa0967700 | 0.800638 | 1.312210e-48 | -8.615850e-47 |
| Msa0296610 | Msa0967700 | 0.800435 | 1.443565e-48 | -8.615850e-47 |
| Msa0298940 | Msa0967700 | 0.814294 | 1.657475e-51 | -8.615850e-47 |
| Msa0350020 | Msa0967700 | 0.818106 | 2.330235e-52 | -8.615850e-47 |
| Msa0352200 | Msa0967700 | 0.823635 | 1.245562e-53 | -8.615850e-47 |
| Msa0505390 | Msa0967700 | 0.819364 | 1.207440e-52 | -8.615850e-47 |
| Msa0516450 | Msa0967700 | 0.912893 | 1.154695e-83 | -8.615850e-47 |
| Msa0524510 | Msa0967700 | 0.808221 | 3.445270e-50 | -8.615850e-47 |
| Msa0528740 | Msa0967700 | 0.827969 | 1.166069e-54 | -8.615850e-47 |
| Msa0530930 | Msa0967700 | 0.810110 | 1.356400e-50 | -8.615850e-47 |
| Msa0571250 | Msa0967700 | 0.804554 | 2.042694e-49 | -8.615850e-47 |
| Msa0574170 | Msa0967700 | 0.835747 | 1.401918e-56 | -8.615850e-47 |
| Msa0576420 | Msa0967700 | 0.815164 | 1.063381e-51 | -8.615850e-47 |
| Msa0577230 | Msa0967700 | 0.812940 | 3.291760e-51 | -8.615850e-47 |
| Msa0579610 | Msa0967700 | 0.801893 | 7.261002e-49 | -8.615850e-47 |
| Msa0583930 | Msa0967700 | 0.807960 | 3.915027e-50 | -8.615850e-47 |
| Msa0587900 | Msa0967700 | 0.806961 | 6.379105e-50 | -8.615850e-47 |
| Msa0589150 | Msa0967700 | 0.832059 | 1.173309e-55 | -8.615850e-47 |
| Msa0589290 | Msa0967700 | 0.804303 | 2.304926e-49 | -8.615850e-47 |
| Msa0843690 | Msa0967700 | 0.826442 | 2.707454e-54 | -8.615850e-47 |
| Msa0848380 | Msa0967700 | 0.808587 | 2.878878e-50 | -8.615850e-47 |
| Msa0863250 | Msa0967700 | 0.844479 | 7.372509e-59 | -8.615850e-47 |
| Msa0937940 | Msa0967700 | 0.801844 | 7.434246e-49 | -8.615850e-47 |
| Msa0967700 | Msa0970050 | 0.816931 | 4.286597e-52 | -8.615850e-47 |
| Msa0967700 | Msa0975080 | 0.809168 | 2.162493e-50 | -8.615850e-47 |
| Msa0967700 | Msa0981730 | 0.812898 | 3.362136e-51 | -8.615850e-47 |
| Msa0967700 | Msa1011210 | 0.809440 | 1.890161e-50 | -8.615850e-47 |
| Msa0967700 | Msa1011240 | 0.823629 | 1.249548e-53 | -8.615850e-47 |
| Msa0967700 | Msa1029320 | 0.805857 | 1.089982e-49 | -8.615850e-47 |
| Msa0967700 | Msa1032140 | 0.809786 | 1.592525e-50 | -8.615850e-47 |
| Msa0967700 | Msa1033790 | 0.803363 | 3.612527e-49 | -8.615850e-47 |
| Msa0967700 | Msa1072080 | 0.801055 | 1.078654e-48 | -8.615850e-47 |
| Msa0967700 | Msa1080470 | 0.809718 | 1.647709e-50 | -8.615850e-47 |
| Msa0967700 | Msa1081700 | 0.839593 | 1.444497e-57 | -8.615850e-47 |
| Msa0967700 | Msa1084490 | 0.831022 | 2.112144e-55 | -8.615850e-47 |
| Msa0967700 | Msa1125780 | 0.814702 | 1.346579e-51 | -8.615850e-47 |
| Msa0967700 | Msa1125950 | 0.812909 | 3.344474e-51 | -8.615850e-47 |
| Msa0967700 | Msa1126170 | 0.828896 | 6.966864e-55 | -8.615850e-47 |
| Msa0967700 | Msa1130650 | 0.827050 | 1.937851e-54 | -8.615850e-47 |
| Msa0967700 | Msa1145370 | 0.825673 | 4.122727e-54 | -8.615850e-47 |
| Msa0967700 | Msa1161760 | 0.847253 | 1.299981e-59 | -8.615850e-47 |
| Msa0967700 | Msa1163050 | 0.802015 | 6.855221e-49 | -8.615850e-47 |
| Msa0967700 | Msa1171340 | 0.800291 | 1.543726e-48 | -8.615850e-47 |
| Msa0967700 | Msa1201990 | 0.802001 | 6.901873e-49 | -8.615850e-47 |
| Msa0967700 | Msa1208980 | 0.811695 | 6.157136e-51 | -8.615850e-47 |
| Msa0967700 | Msa1228880 | 0.808713 | 2.704802e-50 | -8.615850e-47 |
| Msa0967700 | Msa1229050 | 0.813122 | 3.003585e-51 | -8.615850e-47 |
| Msa0967700 | Msa1229690 | 0.818345 | 2.058089e-52 | -8.615850e-47 |
| Msa0967700 | Msa1254990 | 0.807760 | 4.318336e-50 | -8.615850e-47 |
| Msa0967700 | Msa1264560 | 0.811804 | 5.828334e-51 | -8.615850e-47 |
| Msa0967700 | Msa1271490 | 0.812817 | 3.503065e-51 | -8.615850e-47 |
| Msa0967700 | Msa1280120 | 0.809794 | 1.586528e-50 | -8.615850e-47 |
| Msa0967700 | Msa1293060 | 0.806014 | 1.010165e-49 | -8.615850e-47 |
| Msa0967700 | Msa1305520 | 0.812299 | 4.546196e-51 | -8.615850e-47 |
| Msa0967700 | Msa1309100 | 0.806287 | 8.849271e-50 | -8.615850e-47 |
| Msa0967700 | Msa1309240 | 0.801898 | 7.247172e-49 | -8.615850e-47 |
| Msa0967700 | Msa1309360 | 0.805270 | 1.447497e-49 | -8.615850e-47 |
| Msa0967700 | Msa1310110 | 0.828974 | 6.670609e-55 | -8.615850e-47 |
| Msa0967700 | Msa1325980 | 0.801891 | 7.269766e-49 | -8.615850e-47 |
| Msa0967700 | Msa1326000 | 0.826880 | 2.127298e-54 | -8.615850e-47 |
| Msa0967700 | Msa1329990 | 0.804568 | 2.029791e-49 | -8.615850e-47 |
| Msa0967700 | Msa1356410 | 0.815405 | 9.402427e-52 | -8.615850e-47 |
| Msa0967700 | Msa1371840 | 0.822074 | 2.877712e-53 | -8.615850e-47 |
| Msa0967700 | Msa1385900 | 0.806411 | 8.335919e-50 | -8.615850e-47 |
| Msa0967700 | Msa1393010 | 0.810570 | 1.079607e-50 | -8.615850e-47 |
| Msa0967700 | Msa1404370 | 0.811387 | 7.180602e-51 | -8.615850e-47 |
| Msa0967700 | Msa1412520 | 0.821234 | 4.498717e-53 | -8.615850e-47 |
| Msa0967700 | Msa1422900 | 0.807833 | 4.166672e-50 | -8.615850e-47 |
| Msa0967700 | Msa1426290 | 0.804885 | 1.742847e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967700 | MtrunA17_Chr3g0127031 | 90.476 | 378 | 29 | 1 | 1 | 371 | 1 | 378 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967700 | AT5G53080.1 | 52.632 | 342 | 153 | 2 | 39 | 371 | 37 | 378 | 7.47e-115 | 347 |
Find 127 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCTTTGTGAGGTTAAA+TGG | 0.148805 | 6_3:+97808867 | Msa0967700:three_prime_UTR |
| CACCCTCTTTCATTGGATTC+AGG | 0.207485 | 6_3:+97805409 | Msa0967700:CDS |
| ATGTGGTGCATCGTCCTTTA+AGG | 0.225818 | 6_3:-97806775 | None:intergenic |
| GCTGAATTACTCCATACTTC+TGG | 0.251548 | 6_3:+97807842 | Msa0967700:CDS |
| ATCCTTTCTCTTGGATAATC+AGG | 0.268976 | 6_3:-97808571 | None:intergenic |
| GGAGAAAATGATGGAAGAAT+TGG | 0.269813 | 6_3:+97807520 | Msa0967700:CDS |
| CCAGCATGTAATCACTCTTT+TGG | 0.280025 | 6_3:+97807266 | Msa0967700:CDS |
| TATTCTTGTTACACCTCATT+TGG | 0.294632 | 6_3:+97807188 | Msa0967700:CDS |
| ACAAAATGCTTCATGCATTA+AGG | 0.296012 | 6_3:-97808774 | None:intergenic |
| CGCATCCGTGAAAAGGCATT+TGG | 0.302103 | 6_3:+97808291 | Msa0967700:three_prime_UTR |
| AGAAGTTGTTGATACCTTAA+AGG | 0.303730 | 6_3:+97806761 | Msa0967700:CDS |
| GCAAAAGCTGTTGGTTCAAT+TGG | 0.307687 | 6_3:+97807216 | Msa0967700:CDS |
| CATATGGTTCATCACTAAAT+TGG | 0.312283 | 6_3:+97808722 | Msa0967700:three_prime_UTR |
| GTTCCATCACCCTCTTTCAT+TGG | 0.314733 | 6_3:+97805402 | Msa0967700:CDS |
| AACATATACACAAAAGTATA+TGG | 0.333209 | 6_3:+97807499 | Msa0967700:CDS |
| ATTTGCATTAAGCAGGTCTA+TGG | 0.343466 | 6_3:-97805965 | None:intergenic |
| TTTATTCAAACGTGCTCTTA+AGG | 0.344816 | 6_3:+97807754 | Msa0967700:CDS |
| AGATTCAATACTTATGCATA+TGG | 0.358609 | 6_3:+97806800 | Msa0967700:CDS |
| CATATTAGCACTTGGTTACA+TGG | 0.361389 | 6_3:+97806053 | Msa0967700:CDS |
| AAGCTTACCTCCCAGAAGTA+TGG | 0.367519 | 6_3:-97807853 | None:intergenic |
| CGGCTTAATGCTGGCACTAA+AGG | 0.370326 | 6_3:+97806006 | Msa0967700:CDS |
| ATTTCTTTGTGAGGTTAAAT+GGG | 0.372744 | 6_3:+97808868 | Msa0967700:three_prime_UTR |
| AAAATGACTTTCTGCATCAT+TGG | 0.373578 | 6_3:-97807370 | None:intergenic |
| ATTCTTGTTACACCTCATTT+GGG | 0.377310 | 6_3:+97807189 | Msa0967700:CDS |
| CAGCAACTTTGAGAAAGAAT+TGG | 0.381841 | 6_3:+97805888 | Msa0967700:intron |
| ATGCATGTCAGGGGAGGCTT+TGG | 0.385246 | 6_3:+97808478 | Msa0967700:intron |
| TGTTGGTTATCTGTTAAATT+CGG | 0.389764 | 6_3:+97806095 | Msa0967700:CDS |
| AAGATCTTTCGCGAAGTCAT+TGG | 0.390737 | 6_3:+97805704 | Msa0967700:CDS |
| AGGTGCTGAAAGTAAGGATT+TGG | 0.391390 | 6_3:+97807299 | Msa0967700:CDS |
| CTGAATTACTCCATACTTCT+GGG | 0.392390 | 6_3:+97807843 | Msa0967700:CDS |
| GAAGCTAGAAATGGTCCTAA+TGG | 0.393809 | 6_3:-97805673 | None:intergenic |
| GTTGTACCTTTACTTAGTCT+TGG | 0.402641 | 6_3:+97807321 | Msa0967700:CDS |
| TATCATGTGTGTTGCTAAGC+TGG | 0.404372 | 6_3:-97808073 | None:intergenic |
| ACTGTCATCTTTACCAAGTC+TGG | 0.409745 | 6_3:-97808522 | None:intergenic |
| GTATACTACTTAGATAAGTT+AGG | 0.413547 | 6_3:+97808638 | Msa0967700:three_prime_UTR |
| AGAGGATAAAGCGCCGTATT+GGG | 0.417080 | 6_3:-97805305 | None:intergenic |
| AAGAGGATAAAGCGCCGTAT+TGG | 0.425705 | 6_3:-97805306 | None:intergenic |
| CATGTCCGAATCCTTTCTCT+TGG | 0.428885 | 6_3:-97808580 | None:intergenic |
| CACCTCTGATTATCTTCGTC+GGG | 0.429167 | 6_3:-97805777 | None:intergenic |
| GTCACCGGAGAACAGTATAA+TGG | 0.436670 | 6_3:+97807799 | Msa0967700:CDS |
| TGTACCTCTCTGTAATCAAT+AGG | 0.440395 | 6_3:-97808035 | None:intergenic |
| AAAGGCTAAGGAGTGTGAAT+TGG | 0.440607 | 6_3:-97808917 | None:intergenic |
| TTTCATAATTTGCATTAAGC+AGG | 0.445985 | 6_3:-97805972 | None:intergenic |
| TTCGCGAAGTCATTGGAACT+TGG | 0.446451 | 6_3:+97805711 | Msa0967700:CDS |
| AGAAGGAAGAGAGATATTAG+AGG | 0.448038 | 6_3:+97808008 | Msa0967700:CDS |
| TTAATGTGTGTTGTCAATCA+TGG | 0.450454 | 6_3:+97808804 | Msa0967700:three_prime_UTR |
| AAATAGAGGTGCTGAAAGTA+AGG | 0.452020 | 6_3:+97807293 | Msa0967700:CDS |
| TGACAACACACATTAACATA+TGG | 0.454276 | 6_3:-97808797 | None:intergenic |
| AAGCTAGAAATGGTCCTAAT+GGG | 0.455185 | 6_3:-97805672 | None:intergenic |
| GCACGGATAACCTTCTCTGC+AGG | 0.465290 | 6_3:-97808682 | None:intergenic |
| CACGGATGCGTAAAACCTCC+AGG | 0.470890 | 6_3:-97808278 | None:intergenic |
| GTTGAGTTGCGAAGTTATAG+AGG | 0.473426 | 6_3:+97805348 | Msa0967700:five_prime_UTR |
| AGGGGAACTGCTGTCTGCCT+TGG | 0.474769 | 6_3:+97808841 | Msa0967700:three_prime_UTR |
| TAGGAAGAAATATAAGCATA+TGG | 0.476228 | 6_3:+97808706 | Msa0967700:three_prime_UTR |
| TAAAGCGCCGTATTGGGCTG+TGG | 0.479236 | 6_3:-97805299 | None:intergenic |
| AGAGGGTGATGGAACAAAAC+AGG | 0.480276 | 6_3:-97805394 | None:intergenic |
| TGTTACACCTCATTTGGGTA+TGG | 0.480427 | 6_3:+97807194 | Msa0967700:CDS |
| TGAAATGCAGAAGCTAGAAA+TGG | 0.483695 | 6_3:-97805682 | None:intergenic |
| GTGAAAGAGCGGCTTAATGC+TGG | 0.485836 | 6_3:+97805997 | Msa0967700:CDS |
| ATTATCCAAGAGAAAGGATT+CGG | 0.491963 | 6_3:+97808575 | Msa0967700:three_prime_UTR |
| AAAGAATTGGAGGAATTGTT+CGG | 0.497560 | 6_3:+97805901 | Msa0967700:CDS |
| GTAGCTGCAAGTTGCAACAT+AGG | 0.503628 | 6_3:-97808213 | None:intergenic |
| TCATTGGAACTTGGAGGGAC+AGG | 0.505021 | 6_3:+97805720 | Msa0967700:CDS |
| GATTCAATACTTATGCATAT+GGG | 0.505489 | 6_3:+97806801 | Msa0967700:CDS |
| GCACTTGGTTACATGGCTGT+TGG | 0.509178 | 6_3:+97806060 | Msa0967700:CDS |
| GCTTAATGCAAATTATGAAA+TGG | 0.511993 | 6_3:+97805975 | Msa0967700:CDS |
| CTTATATTTCTTCCTAAGCA+CGG | 0.513677 | 6_3:-97808699 | None:intergenic |
| CAACTTTGAGAAAGAATTGG+AGG | 0.515276 | 6_3:+97805891 | Msa0967700:CDS |
| AGAGAAGGTTATCCGTGCTT+AGG | 0.516989 | 6_3:+97808687 | Msa0967700:three_prime_UTR |
| GAACAAATTTGAAGACTCAC+TGG | 0.521362 | 6_3:+97806842 | Msa0967700:CDS |
| GGAGATCATTCTCTTCCTGT+TGG | 0.521643 | 6_3:+97808312 | Msa0967700:three_prime_UTR |
| AAAGTATATGGAGAAAATGA+TGG | 0.522288 | 6_3:+97807511 | Msa0967700:CDS |
| GCTCAAGTGAAGTGTGCTCT+AGG | 0.526312 | 6_3:+97807562 | Msa0967700:CDS |
| ATCCTGATTATCCAAGAGAA+AGG | 0.530040 | 6_3:+97808569 | Msa0967700:three_prime_UTR |
| AAAAGCTTCCCCTGCAGAGA+AGG | 0.530458 | 6_3:+97808672 | Msa0967700:three_prime_UTR |
| ATCATGTGTGTTGCTAAGCT+GGG | 0.537536 | 6_3:-97808072 | None:intergenic |
| CTTGGTGATATTTCTTTGTG+AGG | 0.540407 | 6_3:+97808859 | Msa0967700:three_prime_UTR |
| AGCTATACATTATACCCATT+AGG | 0.542016 | 6_3:+97805658 | Msa0967700:CDS |
| GCGAAGTCATTGGAACTTGG+AGG | 0.542669 | 6_3:+97805714 | Msa0967700:CDS |
| CTCACTGGACACATATCAAA+GGG | 0.542709 | 6_3:+97806857 | Msa0967700:CDS |
| GTTGGAGACTTGAAGTATGT+TGG | 0.543920 | 6_3:+97806078 | Msa0967700:CDS |
| CAGTATAATGGAAAAGATGA+GGG | 0.546450 | 6_3:+97807811 | Msa0967700:CDS |
| TAGCTGCAAGTTGCAACATA+GGG | 0.546816 | 6_3:-97808212 | None:intergenic |
| TTGGGTATGGCAAAAGCTGT+TGG | 0.550187 | 6_3:+97807207 | Msa0967700:CDS |
| GAACCTGAATCCAATGAAAG+AGG | 0.550486 | 6_3:-97805412 | None:intergenic |
| GTGTCTATTCAAGCCAGACT+TGG | 0.550978 | 6_3:+97808509 | Msa0967700:three_prime_UTR |
| ACAGTATAATGGAAAAGATG+AGG | 0.554987 | 6_3:+97807810 | Msa0967700:CDS |
| CACGGATAACCTTCTCTGCA+GGG | 0.555081 | 6_3:-97808681 | None:intergenic |
| ATTCGGACATGAGAGTGAGC+AGG | 0.562524 | 6_3:+97808592 | Msa0967700:three_prime_UTR |
| TAAGTCCCAAACAAAGGCTA+AGG | 0.566314 | 6_3:-97808929 | None:intergenic |
| AGAAGCAGAGAAACTCGCCC+TGG | 0.567980 | 6_3:+97808260 | Msa0967700:three_prime_UTR |
| CGAAGTCATTGGAACTTGGA+GGG | 0.570572 | 6_3:+97805715 | Msa0967700:CDS |
| TACAGAGAGGTACAAAGGAA+AGG | 0.570695 | 6_3:+97808044 | Msa0967700:CDS |
| ACATAGGGAAGCTGATGGAC+TGG | 0.571586 | 6_3:-97808197 | None:intergenic |
| ACGTGCTCTTAAGGTCATGA+AGG | 0.572087 | 6_3:+97807763 | Msa0967700:CDS |
| CTTACTTCAAGAGGACAAGA+AGG | 0.574909 | 6_3:+97807991 | Msa0967700:intron |
| CCAAAAGAGTGATTACATGC+TGG | 0.579083 | 6_3:-97807266 | None:intergenic |
| AAATGATGGAAGAATTGGAA+TGG | 0.582126 | 6_3:+97807525 | Msa0967700:CDS |
| TAATAGCCCACAGCCCAATA+CGG | 0.582329 | 6_3:+97805292 | Msa0967700:five_prime_UTR |
| ACACCTCTGATTATCTTCGT+CGG | 0.583628 | 6_3:-97805778 | None:intergenic |
| CAAATCATGATAAAGCATAA+CGG | 0.586673 | 6_3:+97808165 | Msa0967700:three_prime_UTR |
| AATCCAATGAAAGAGGGTGA+TGG | 0.596105 | 6_3:-97805405 | None:intergenic |
| GGACTCAAATTACATGTCAC+CGG | 0.596445 | 6_3:+97807784 | Msa0967700:CDS |
| TGCTGGCACTAAAGGCATAG+AGG | 0.599485 | 6_3:+97806014 | Msa0967700:CDS |
| ACTCACTGGACACATATCAA+AGG | 0.601175 | 6_3:+97806856 | Msa0967700:CDS |
| AACGAAGGAACACAGAGAAG+AGG | 0.602745 | 6_3:-97805323 | None:intergenic |
| AATGCTTCATGCATTAAGGA+AGG | 0.603353 | 6_3:-97808770 | None:intergenic |
| AAAGCGCCGTATTGGGCTGT+GGG | 0.609680 | 6_3:-97805298 | None:intergenic |
| TTGCAACATAGGGAAGCTGA+TGG | 0.612312 | 6_3:-97808202 | None:intergenic |
| AACCTGAATCCAATGAAAGA+GGG | 0.613573 | 6_3:-97805411 | None:intergenic |
| TCTTGCAATGAGAGAGCATG+TGG | 0.623593 | 6_3:-97805579 | None:intergenic |
| AGATTGCCAAGACTAAGTAA+AGG | 0.624430 | 6_3:-97807327 | None:intergenic |
| TTGATTACAGAGAGGTACAA+AGG | 0.629542 | 6_3:+97808039 | Msa0967700:CDS |
| ATCTCGCAACTTCGTACACA+CGG | 0.633480 | 6_3:+97808097 | Msa0967700:CDS |
| AGCAGAGAAACTCGCCCTGG+AGG | 0.648249 | 6_3:+97808263 | Msa0967700:three_prime_UTR |
| ACGGATAACCTTCTCTGCAG+GGG | 0.654802 | 6_3:-97808680 | None:intergenic |
| CTCCCGACGAAGATAATCAG+AGG | 0.658761 | 6_3:+97805775 | Msa0967700:CDS |
| ATTATGAAATGGTGAAAGAG+CGG | 0.664891 | 6_3:+97805986 | Msa0967700:CDS |
| ACGGATGCGTAAAACCTCCA+GGG | 0.672923 | 6_3:-97808277 | None:intergenic |
| GCATATGGGAAATATGTATG+CGG | 0.687958 | 6_3:+97806815 | Msa0967700:CDS |
| TTCGCAACTCAACAGAACGA+AGG | 0.689617 | 6_3:-97805338 | None:intergenic |
| TGGCACTAAAGGCATAGAGG+AGG | 0.696456 | 6_3:+97806017 | Msa0967700:CDS |
| ATAAGTATTGAATCTAGATG+TGG | 0.709685 | 6_3:-97806792 | None:intergenic |
| ACGGTCAAAGAATTATGCAG+AGG | 0.715366 | 6_3:+97808116 | Msa0967700:CDS |
| CTCACAAAGAAATATCACCA+AGG | 0.722380 | 6_3:-97808858 | None:intergenic |
| AATTACTCCATACTTCTGGG+AGG | 0.730279 | 6_3:+97807846 | Msa0967700:CDS |
| AGTGCCTATTGATTACAGAG+AGG | 0.754196 | 6_3:+97808031 | Msa0967700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr6_3:97807664-97807683 | None:intergenic | 0.0% |
| !!! | TTATTTATTGTTTTTCACTA+GGG | + | chr6_3:97807471-97807490 | Msa0967700:intron | 15.0% |
| !!! | ATATACAATATATTTTTGCA+GGG | + | chr6_3:97807711-97807730 | Msa0967700:intron | 15.0% |
| !!! | GTAGTATACAATTTTTTTAA+GGG | - | chr6_3:97808627-97808646 | None:intergenic | 15.0% |
| !!! | AGTAGTATACAATTTTTTTA+AGG | - | chr6_3:97808628-97808647 | None:intergenic | 15.0% |
| !! | ACATATGAAATTTGAAAAGA+AGG | - | chr6_3:97805437-97805456 | None:intergenic | 20.0% |
| !! | AGTGAAAAAAATGATTAAGA+TGG | + | chr6_3:97805927-97805946 | Msa0967700:CDS | 20.0% |
| !! | GTGAAAAAAATGATTAAGAT+GGG | + | chr6_3:97805928-97805947 | Msa0967700:CDS | 20.0% |
| !!! | TTTTTGTACAATGAGAATAA+AGG | + | chr6_3:97806323-97806342 | Msa0967700:intron | 20.0% |
| !! | ATTGAAGGAGAAAAAAAATT+AGG | - | chr6_3:97807410-97807429 | None:intergenic | 20.0% |
| !! | ACTAATACACTAAATATTGA+AGG | - | chr6_3:97807425-97807444 | None:intergenic | 20.0% |
| !!! | CTTATTTATTGTTTTTCACT+AGG | + | chr6_3:97807470-97807489 | Msa0967700:intron | 20.0% |
| !!! | AACATATACACAAAAGTATA+TGG | + | chr6_3:97807499-97807518 | Msa0967700:CDS | 20.0% |
| !!! | GATATACAATATATTTTTGC+AGG | + | chr6_3:97807710-97807729 | Msa0967700:intron | 20.0% |
| !! | TTATAGAGGTTTTTGTACTA+TGG | + | chr6_3:97805362-97805381 | Msa0967700:exon | 25.0% |
| ! | TATGAACAACTATAAGAGTT+GGG | - | chr6_3:97805485-97805504 | None:intergenic | 25.0% |
| ! | TTATGAACAACTATAAGAGT+TGG | - | chr6_3:97805486-97805505 | None:intergenic | 25.0% |
| ! | ATGTTATCTGTTCTTCTATT+AGG | + | chr6_3:97805541-97805560 | Msa0967700:intron | 25.0% |
| !! | TTTCATAATTTGCATTAAGC+AGG | - | chr6_3:97805975-97805994 | None:intergenic | 25.0% |
| ! | GCTTAATGCAAATTATGAAA+TGG | + | chr6_3:97805975-97805994 | Msa0967700:CDS | 25.0% |
| !! | TGTTGGTTATCTGTTAAATT+CGG | + | chr6_3:97806095-97806114 | Msa0967700:CDS | 25.0% |
| ! | ACTTAAGAATCCAGATTTAT+TGG | + | chr6_3:97806283-97806302 | Msa0967700:intron | 25.0% |
| ! | ATTCTCATTGTACAAAAATC+TGG | - | chr6_3:97806321-97806340 | None:intergenic | 25.0% |
| ! | GTTAAGCTTGAATGAATAAA+CGG | + | chr6_3:97806406-97806425 | Msa0967700:intron | 25.0% |
| ! | GATTTGACTGCATATATTAT+TGG | - | chr6_3:97806435-97806454 | None:intergenic | 25.0% |
| ! | AAATGTTGCAATAATGAGTT+TGG | - | chr6_3:97806601-97806620 | None:intergenic | 25.0% |
| !!! | GATGCATTTTAACAACAATT+TGG | - | chr6_3:97806631-97806650 | None:intergenic | 25.0% |
| !! | AATTGTTGTTAAAATGCATC+TGG | + | chr6_3:97806631-97806650 | Msa0967700:intron | 25.0% |
| !!! | ATAAGTATTGAATCTAGATG+TGG | - | chr6_3:97806795-97806814 | None:intergenic | 25.0% |
| ! | AGATTCAATACTTATGCATA+TGG | + | chr6_3:97806800-97806819 | Msa0967700:CDS | 25.0% |
| ! | GATTCAATACTTATGCATAT+GGG | + | chr6_3:97806801-97806820 | Msa0967700:CDS | 25.0% |
| ! | AACATGAAAAACATTGCTAA+CGG | - | chr6_3:97806924-97806943 | None:intergenic | 25.0% |
| !!! | AAATAATAACAAGAGTGCTA+TGG | - | chr6_3:97807008-97807027 | None:intergenic | 25.0% |
| !!! | ATTTACCGACATTTTTCAAT+TGG | + | chr6_3:97807024-97807043 | Msa0967700:intron | 25.0% |
| !!! | TTTACCGACATTTTTCAATT+GGG | + | chr6_3:97807025-97807044 | Msa0967700:intron | 25.0% |
| !!! | TGCTACATTTTTCAAAATTC+CGG | + | chr6_3:97807126-97807145 | Msa0967700:intron | 25.0% |
| ! | AAGAATTACAATGTGAATAC+CGG | - | chr6_3:97807148-97807167 | None:intergenic | 25.0% |
| !! | CACATTGTAATTCTTCTTTT+AGG | + | chr6_3:97807153-97807172 | Msa0967700:intron | 25.0% |
| !!! | TGTAATTCTTCTTTTAGGTA+AGG | + | chr6_3:97807158-97807177 | Msa0967700:intron | 25.0% |
| ! | AAAGTATATGGAGAAAATGA+TGG | + | chr6_3:97807511-97807530 | Msa0967700:CDS | 25.0% |
| !!! | TTTTTTGTGTTATCAAGCTT+AGG | + | chr6_3:97807679-97807698 | Msa0967700:intron | 25.0% |
| ! | CAAATCATGATAAAGCATAA+CGG | + | chr6_3:97808165-97808184 | Msa0967700:three_prime_UTR | 25.0% |
| !!! | CTTCTTCATCATTTTTCAAA+TGG | - | chr6_3:97808245-97808264 | None:intergenic | 25.0% |
| ! | TAGAACTATTATAAGCTTCA+GGG | - | chr6_3:97808372-97808391 | None:intergenic | 25.0% |
| ! | ATTGTATATTATGCATGTCA+GGG | + | chr6_3:97808468-97808487 | Msa0967700:intron | 25.0% |
| ! | GTATACTACTTAGATAAGTT+AGG | + | chr6_3:97808638-97808657 | Msa0967700:three_prime_UTR | 25.0% |
| ! | TAGGAAGAAATATAAGCATA+TGG | + | chr6_3:97808706-97808725 | Msa0967700:three_prime_UTR | 25.0% |
| ! | TATTTCTTTGTGAGGTTAAA+TGG | + | chr6_3:97808867-97808886 | Msa0967700:three_prime_UTR | 25.0% |
| ! | ATTTCTTTGTGAGGTTAAAT+GGG | + | chr6_3:97808868-97808887 | Msa0967700:three_prime_UTR | 25.0% |
| AGCTATACATTATACCCATT+AGG | + | chr6_3:97805658-97805677 | Msa0967700:CDS | 30.0% | |
| AAAGAATTGGAGGAATTGTT+CGG | + | chr6_3:97805901-97805920 | Msa0967700:CDS | 30.0% | |
| ATTATGAAATGGTGAAAGAG+CGG | + | chr6_3:97805986-97806005 | Msa0967700:CDS | 30.0% | |
| !! | GTTTTAGACATATTAGCACT+TGG | + | chr6_3:97806045-97806064 | Msa0967700:CDS | 30.0% |
| TTCAACTAATTCATACCATG+CGG | - | chr6_3:97806192-97806211 | None:intergenic | 30.0% | |
| CTATGATCATCCAATAAATC+TGG | - | chr6_3:97806296-97806315 | None:intergenic | 30.0% | |
| CAGATTTATTGGATGATCAT+AGG | + | chr6_3:97806294-97806313 | Msa0967700:intron | 30.0% | |
| TTGTACAATGAGAATAAAGG+AGG | + | chr6_3:97806326-97806345 | Msa0967700:intron | 30.0% | |
| TTGACTGCATATATTATTGG+TGG | - | chr6_3:97806432-97806451 | None:intergenic | 30.0% | |
| GAAAATATGCTTGTAAGACA+AGG | - | chr6_3:97806467-97806486 | None:intergenic | 30.0% | |
| ! | AGTTTTCTTTGTATCTGTCT+TGG | + | chr6_3:97806562-97806581 | Msa0967700:intron | 30.0% |
| ATCAACAACTTCTTTCAACT+GGG | - | chr6_3:97806754-97806773 | None:intergenic | 30.0% | |
| TATCAACAACTTCTTTCAAC+TGG | - | chr6_3:97806755-97806774 | None:intergenic | 30.0% | |
| AGAAGTTGTTGATACCTTAA+AGG | + | chr6_3:97806761-97806780 | Msa0967700:CDS | 30.0% | |
| ! | TTTTCACTCAATAAGAGAGT+GGG | + | chr6_3:97806953-97806972 | Msa0967700:intron | 30.0% |
| TACACAGATAATTTCCTCTA+AGG | - | chr6_3:97807100-97807119 | None:intergenic | 30.0% | |
| TATTCTTGTTACACCTCATT+TGG | + | chr6_3:97807188-97807207 | Msa0967700:CDS | 30.0% | |
| ATTCTTGTTACACCTCATTT+GGG | + | chr6_3:97807189-97807208 | Msa0967700:CDS | 30.0% | |
| !!! | ACTCTTTTGGAATCAAATAG+AGG | + | chr6_3:97807279-97807298 | Msa0967700:CDS | 30.0% |
| AAAATGACTTTCTGCATCAT+TGG | - | chr6_3:97807373-97807392 | None:intergenic | 30.0% | |
| !!! | ATGCAGAAAGTCATTTTTCT+AGG | + | chr6_3:97807376-97807395 | Msa0967700:CDS | 30.0% |
| ! | AAATGATGGAAGAATTGGAA+TGG | + | chr6_3:97807525-97807544 | Msa0967700:CDS | 30.0% |
| CTAGGTAACTTCATAATTAC+CGG | + | chr6_3:97807580-97807599 | Msa0967700:intron | 30.0% | |
| ! | CTTTTGTTCTCTCTTCAAAT+GGG | + | chr6_3:97807610-97807629 | Msa0967700:intron | 30.0% |
| ! | TTTTGTTCTCTCTTCAAATG+GGG | + | chr6_3:97807611-97807630 | Msa0967700:intron | 30.0% |
| AAAAAGGAAAGAAAAACCCA+GGG | - | chr6_3:97807649-97807668 | None:intergenic | 30.0% | |
| AAAAAAGGAAAGAAAAACCC+AGG | - | chr6_3:97807650-97807669 | None:intergenic | 30.0% | |
| TTTATTCAAACGTGCTCTTA+AGG | + | chr6_3:97807754-97807773 | Msa0967700:CDS | 30.0% | |
| ! | TTTTCCATTATACTGTTCTC+CGG | - | chr6_3:97807806-97807825 | None:intergenic | 30.0% |
| ! | ACAGTATAATGGAAAAGATG+AGG | + | chr6_3:97807810-97807829 | Msa0967700:CDS | 30.0% |
| ! | CAGTATAATGGAAAAGATGA+GGG | + | chr6_3:97807811-97807830 | Msa0967700:CDS | 30.0% |
| ! | AGCTTTATAAACTTGGTAGT+AGG | + | chr6_3:97807871-97807890 | Msa0967700:intron | 30.0% |
| CTAGAACTATTATAAGCTTC+AGG | - | chr6_3:97808373-97808392 | None:intergenic | 30.0% | |
| ATTATTCAGATGATCCTGTT+TGG | + | chr6_3:97808399-97808418 | Msa0967700:intron | 30.0% | |
| CAATCAATGTCAGTTTCATA+AGG | - | chr6_3:97808452-97808471 | None:intergenic | 30.0% | |
| GATTGTATATTATGCATGTC+AGG | + | chr6_3:97808467-97808486 | Msa0967700:intron | 30.0% | |
| TTGTATATTATGCATGTCAG+GGG | + | chr6_3:97808469-97808488 | Msa0967700:intron | 30.0% | |
| ATTATCCAAGAGAAAGGATT+CGG | + | chr6_3:97808575-97808594 | Msa0967700:three_prime_UTR | 30.0% | |
| CTTATATTTCTTCCTAAGCA+CGG | - | chr6_3:97808702-97808721 | None:intergenic | 30.0% | |
| CATATGGTTCATCACTAAAT+TGG | + | chr6_3:97808722-97808741 | Msa0967700:three_prime_UTR | 30.0% | |
| ACAAAATGCTTCATGCATTA+AGG | - | chr6_3:97808777-97808796 | None:intergenic | 30.0% | |
| TGACAACACACATTAACATA+TGG | - | chr6_3:97808800-97808819 | None:intergenic | 30.0% | |
| TTAATGTGTGTTGTCAATCA+TGG | + | chr6_3:97808804-97808823 | Msa0967700:three_prime_UTR | 30.0% | |
| !!! | AAATGGGATTGTTTTTGTTC+AGG | + | chr6_3:97808884-97808903 | Msa0967700:three_prime_UTR | 30.0% |
| AACCTGAATCCAATGAAAGA+GGG | - | chr6_3:97805414-97805433 | None:intergenic | 35.0% | |
| AAGCTAGAAATGGTCCTAAT+GGG | - | chr6_3:97805675-97805694 | None:intergenic | 35.0% | |
| TGAAATGCAGAAGCTAGAAA+TGG | - | chr6_3:97805685-97805704 | None:intergenic | 35.0% | |
| ! | AGATAATCAGAGGTGTGAAT+TGG | + | chr6_3:97805785-97805804 | Msa0967700:intron | 35.0% |
| ! | CAGCAACTTTGAGAAAGAAT+TGG | + | chr6_3:97805888-97805907 | Msa0967700:intron | 35.0% |
| ! | CAACTTTGAGAAAGAATTGG+AGG | + | chr6_3:97805891-97805910 | Msa0967700:CDS | 35.0% |
| ATTTGCATTAAGCAGGTCTA+TGG | - | chr6_3:97805968-97805987 | None:intergenic | 35.0% | |
| CATATTAGCACTTGGTTACA+TGG | + | chr6_3:97806053-97806072 | Msa0967700:CDS | 35.0% | |
| ! | CTGAAGAGTATACAAGAGAA+GGG | - | chr6_3:97806136-97806155 | None:intergenic | 35.0% |
| ! | ACTGAAGAGTATACAAGAGA+AGG | - | chr6_3:97806137-97806156 | None:intergenic | 35.0% |
| GCATATGGGAAATATGTATG+CGG | + | chr6_3:97806815-97806834 | Msa0967700:CDS | 35.0% | |
| GAACAAATTTGAAGACTCAC+TGG | + | chr6_3:97806842-97806861 | Msa0967700:CDS | 35.0% | |
| TACATTGTGGAGAGGATTTA+TGG | + | chr6_3:97806885-97806904 | Msa0967700:intron | 35.0% | |
| ! | GTTTTCACTCAATAAGAGAG+TGG | + | chr6_3:97806952-97806971 | Msa0967700:intron | 35.0% |
| TGTGCCCAATTGAAAAATGT+CGG | - | chr6_3:97807032-97807051 | None:intergenic | 35.0% | |
| ! | CTAAGGTATCTGTCTAGAAA+TGG | - | chr6_3:97807083-97807102 | None:intergenic | 35.0% |
| TTTCTAGACAGATACCTTAG+AGG | + | chr6_3:97807083-97807102 | Msa0967700:intron | 35.0% | |
| !! | AAATAGAGGTGCTGAAAGTA+AGG | + | chr6_3:97807293-97807312 | Msa0967700:CDS | 35.0% |
| GTTGTACCTTTACTTAGTCT+TGG | + | chr6_3:97807321-97807340 | Msa0967700:CDS | 35.0% | |
| AGATTGCCAAGACTAAGTAA+AGG | - | chr6_3:97807330-97807349 | None:intergenic | 35.0% | |
| ! | GGAGAAAATGATGGAAGAAT+TGG | + | chr6_3:97807520-97807539 | Msa0967700:CDS | 35.0% |
| ! | GCTTTTGTTCTCTCTTCAAA+TGG | + | chr6_3:97807609-97807628 | Msa0967700:intron | 35.0% |
| CTGAATTACTCCATACTTCT+GGG | + | chr6_3:97807843-97807862 | Msa0967700:CDS | 35.0% | |
| ! | GGAGGTAAGCTTTATAAACT+TGG | + | chr6_3:97807864-97807883 | Msa0967700:intron | 35.0% |
| AGCAAAAGATTAAGACCAAG+AGG | + | chr6_3:97807894-97807913 | Msa0967700:intron | 35.0% | |
| ATGTAACTCAACACTTACTG+TGG | + | chr6_3:97807958-97807977 | Msa0967700:intron | 35.0% | |
| AGAAGGAAGAGAGATATTAG+AGG | + | chr6_3:97808008-97808027 | Msa0967700:CDS | 35.0% | |
| TGTACCTCTCTGTAATCAAT+AGG | - | chr6_3:97808038-97808057 | None:intergenic | 35.0% | |
| ! | TTGATTACAGAGAGGTACAA+AGG | + | chr6_3:97808039-97808058 | Msa0967700:CDS | 35.0% |
| GTATGTGAATGAAACCAAAC+AGG | - | chr6_3:97808416-97808435 | None:intergenic | 35.0% | |
| ATCCTGATTATCCAAGAGAA+AGG | + | chr6_3:97808569-97808588 | Msa0967700:three_prime_UTR | 35.0% | |
| ATCCTTTCTCTTGGATAATC+AGG | - | chr6_3:97808574-97808593 | None:intergenic | 35.0% | |
| AATGCTTCATGCATTAAGGA+AGG | - | chr6_3:97808773-97808792 | None:intergenic | 35.0% | |
| ! | TCATGGTTTTTACTTCAGTG+AGG | + | chr6_3:97808821-97808840 | Msa0967700:three_prime_UTR | 35.0% |
| ! | CATGGTTTTTACTTCAGTGA+GGG | + | chr6_3:97808822-97808841 | Msa0967700:three_prime_UTR | 35.0% |
| ! | ATGGTTTTTACTTCAGTGAG+GGG | + | chr6_3:97808823-97808842 | Msa0967700:three_prime_UTR | 35.0% |
| CTCACAAAGAAATATCACCA+AGG | - | chr6_3:97808861-97808880 | None:intergenic | 35.0% | |
| ! | CTTGGTGATATTTCTTTGTG+AGG | + | chr6_3:97808859-97808878 | Msa0967700:three_prime_UTR | 35.0% |
| !!! | GGATTGTTTTTGTTCAGGTT+TGG | + | chr6_3:97808889-97808908 | Msa0967700:three_prime_UTR | 35.0% |
| ! | GTTGAGTTGCGAAGTTATAG+AGG | + | chr6_3:97805348-97805367 | Msa0967700:five_prime_UTR | 40.0% |
| AATCCAATGAAAGAGGGTGA+TGG | - | chr6_3:97805408-97805427 | None:intergenic | 40.0% | |
| GAACCTGAATCCAATGAAAG+AGG | - | chr6_3:97805415-97805434 | None:intergenic | 40.0% | |
| GAACAACTATAAGAGTTGGG+TGG | - | chr6_3:97805482-97805501 | None:intergenic | 40.0% | |
| GAAGCTAGAAATGGTCCTAA+TGG | - | chr6_3:97805676-97805695 | None:intergenic | 40.0% | |
| AAGATCTTTCGCGAAGTCAT+TGG | + | chr6_3:97805704-97805723 | Msa0967700:CDS | 40.0% | |
| ACACCTCTGATTATCTTCGT+CGG | - | chr6_3:97805781-97805800 | None:intergenic | 40.0% | |
| TGCAGAATTTGCAGAGTCAA+CGG | - | chr6_3:97805857-97805876 | None:intergenic | 40.0% | |
| GTTGGAGACTTGAAGTATGT+TGG | + | chr6_3:97806078-97806097 | Msa0967700:CDS | 40.0% | |
| ! | AAGAGTATACAAGAGAAGGG+TGG | - | chr6_3:97806133-97806152 | None:intergenic | 40.0% |
| ATAAAGGAGGAGTCAGTTGT+TGG | + | chr6_3:97806339-97806358 | Msa0967700:intron | 40.0% | |
| TGCTGATAGAAAGATAGCGT+GGG | - | chr6_3:97806513-97806532 | None:intergenic | 40.0% | |
| ATGCTGATAGAAAGATAGCG+TGG | - | chr6_3:97806514-97806533 | None:intergenic | 40.0% | |
| CATCACATCTTTGACTCTCT+TGG | + | chr6_3:97806531-97806550 | Msa0967700:intron | 40.0% | |
| GAGAGAACAACAACAGAAAG+TGG | - | chr6_3:97806669-97806688 | None:intergenic | 40.0% | |
| AATCCACACCATAGAGAAAG+TGG | - | chr6_3:97806713-97806732 | None:intergenic | 40.0% | |
| ACTCACTGGACACATATCAA+AGG | + | chr6_3:97806856-97806875 | Msa0967700:CDS | 40.0% | |
| CTCACTGGACACATATCAAA+GGG | + | chr6_3:97806857-97806876 | Msa0967700:CDS | 40.0% | |
| TCAATAAGAGAGTGGGTGTT+AGG | + | chr6_3:97806960-97806979 | Msa0967700:intron | 40.0% | |
| CAATAAGAGAGTGGGTGTTA+GGG | + | chr6_3:97806961-97806980 | Msa0967700:intron | 40.0% | |
| TGTTACACCTCATTTGGGTA+TGG | + | chr6_3:97807194-97807213 | Msa0967700:CDS | 40.0% | |
| !! | GCAAAAGCTGTTGGTTCAAT+TGG | + | chr6_3:97807216-97807235 | Msa0967700:CDS | 40.0% |
| CCAAAAGAGTGATTACATGC+TGG | - | chr6_3:97807269-97807288 | None:intergenic | 40.0% | |
| ! | CCAGCATGTAATCACTCTTT+TGG | + | chr6_3:97807266-97807285 | Msa0967700:CDS | 40.0% |
| !! | AGGTGCTGAAAGTAAGGATT+TGG | + | chr6_3:97807299-97807318 | Msa0967700:CDS | 40.0% |
| !! | AGAGAACAAAAGCATCACTC+CGG | - | chr6_3:97807602-97807621 | None:intergenic | 40.0% |
| GGACTCAAATTACATGTCAC+CGG | + | chr6_3:97807784-97807803 | Msa0967700:CDS | 40.0% | |
| GCTGAATTACTCCATACTTC+TGG | + | chr6_3:97807842-97807861 | Msa0967700:CDS | 40.0% | |
| AATTACTCCATACTTCTGGG+AGG | + | chr6_3:97807846-97807865 | Msa0967700:CDS | 40.0% | |
| TACTGTGTTCTTACTCCTCT+TGG | - | chr6_3:97807912-97807931 | None:intergenic | 40.0% | |
| AAGAGGAGTAAGAACACAGT+AGG | + | chr6_3:97807911-97807930 | Msa0967700:intron | 40.0% | |
| TCCTATTGCCTTACTTCAAG+AGG | + | chr6_3:97807982-97808001 | Msa0967700:intron | 40.0% | |
| TCCTCTTGAAGTAAGGCAAT+AGG | - | chr6_3:97807986-97808005 | None:intergenic | 40.0% | |
| CTTCTTGTCCTCTTGAAGTA+AGG | - | chr6_3:97807993-97808012 | None:intergenic | 40.0% | |
| CTTACTTCAAGAGGACAAGA+AGG | + | chr6_3:97807991-97808010 | Msa0967700:intron | 40.0% | |
| ! | AGTGCCTATTGATTACAGAG+AGG | + | chr6_3:97808031-97808050 | Msa0967700:CDS | 40.0% |
| ! | TACAGAGAGGTACAAAGGAA+AGG | + | chr6_3:97808044-97808063 | Msa0967700:CDS | 40.0% |
| ! | ATCATGTGTGTTGCTAAGCT+GGG | - | chr6_3:97808075-97808094 | None:intergenic | 40.0% |
| ! | TATCATGTGTGTTGCTAAGC+TGG | - | chr6_3:97808076-97808095 | None:intergenic | 40.0% |
| ACGGTCAAAGAATTATGCAG+AGG | + | chr6_3:97808116-97808135 | Msa0967700:CDS | 40.0% | |
| TAGCTGCAAGTTGCAACATA+GGG | - | chr6_3:97808215-97808234 | None:intergenic | 40.0% | |
| ! | GATCTCCAAATGCCTTTTCA+CGG | - | chr6_3:97808299-97808318 | None:intergenic | 40.0% |
| ! | GAGAAGGGAATTTTACCAAC+AGG | - | chr6_3:97808330-97808349 | None:intergenic | 40.0% |
| TATATTATGCATGTCAGGGG+AGG | + | chr6_3:97808472-97808491 | Msa0967700:intron | 40.0% | |
| ACTGTCATCTTTACCAAGTC+TGG | - | chr6_3:97808525-97808544 | None:intergenic | 40.0% | |
| ! | AAAGGCTAAGGAGTGTGAAT+TGG | - | chr6_3:97808920-97808939 | None:intergenic | 40.0% |
| TAATAGCCCACAGCCCAATA+CGG | + | chr6_3:97805292-97805311 | Msa0967700:five_prime_UTR | 45.0% | |
| !! | AGAGGATAAAGCGCCGTATT+GGG | - | chr6_3:97805308-97805327 | None:intergenic | 45.0% |
| !! | AAGAGGATAAAGCGCCGTAT+TGG | - | chr6_3:97805309-97805328 | None:intergenic | 45.0% |
| AACGAAGGAACACAGAGAAG+AGG | - | chr6_3:97805326-97805345 | None:intergenic | 45.0% | |
| TTCGCAACTCAACAGAACGA+AGG | - | chr6_3:97805341-97805360 | None:intergenic | 45.0% | |
| !! | AGAGGGTGATGGAACAAAAC+AGG | - | chr6_3:97805397-97805416 | None:intergenic | 45.0% |
| GTTCCATCACCCTCTTTCAT+TGG | + | chr6_3:97805402-97805421 | Msa0967700:CDS | 45.0% | |
| CACCCTCTTTCATTGGATTC+AGG | + | chr6_3:97805409-97805428 | Msa0967700:CDS | 45.0% | |
| ! | TCTTGCAATGAGAGAGCATG+TGG | - | chr6_3:97805582-97805601 | None:intergenic | 45.0% |
| TTCGCGAAGTCATTGGAACT+TGG | + | chr6_3:97805711-97805730 | Msa0967700:CDS | 45.0% | |
| CGAAGTCATTGGAACTTGGA+GGG | + | chr6_3:97805715-97805734 | Msa0967700:CDS | 45.0% | |
| CACCTCTGATTATCTTCGTC+GGG | - | chr6_3:97805780-97805799 | None:intergenic | 45.0% | |
| TCTCAAAGTTGCTGCATCAG+TGG | - | chr6_3:97805882-97805901 | None:intergenic | 45.0% | |
| AGTATACAAGAGAAGGGTGG+AGG | - | chr6_3:97806130-97806149 | None:intergenic | 45.0% | |
| ! | GATTTCTTGTTGTGTCCGCA+TGG | + | chr6_3:97806174-97806193 | Msa0967700:intron | 45.0% |
| TGATAGAAAGATAGCGTGGG+TGG | - | chr6_3:97806510-97806529 | None:intergenic | 45.0% | |
| ACCATAGAGAAAGTGGAGTG+AGG | - | chr6_3:97806706-97806725 | None:intergenic | 45.0% | |
| ACTCCACTTTCTCTATGGTG+TGG | + | chr6_3:97806707-97806726 | Msa0967700:intron | 45.0% | |
| ATGTGGTGCATCGTCCTTTA+AGG | - | chr6_3:97806778-97806797 | None:intergenic | 45.0% | |
| TCAAAGGGCTGTCTACATTG+TGG | + | chr6_3:97806872-97806891 | Msa0967700:intron | 45.0% | |
| ! | GCTTTTGCCATACCCAAATG+AGG | - | chr6_3:97807204-97807223 | None:intergenic | 45.0% |
| TTGGGTATGGCAAAAGCTGT+TGG | + | chr6_3:97807207-97807226 | Msa0967700:CDS | 45.0% | |
| TTCAAATGGGGTCCAAGTAC+AGG | + | chr6_3:97807623-97807642 | Msa0967700:intron | 45.0% | |
| ACGTGCTCTTAAGGTCATGA+AGG | + | chr6_3:97807763-97807782 | Msa0967700:CDS | 45.0% | |
| GTCACCGGAGAACAGTATAA+TGG | + | chr6_3:97807799-97807818 | Msa0967700:CDS | 45.0% | |
| AAGCTTACCTCCCAGAAGTA+TGG | - | chr6_3:97807856-97807875 | None:intergenic | 45.0% | |
| ATCTCGCAACTTCGTACACA+CGG | + | chr6_3:97808097-97808116 | Msa0967700:CDS | 45.0% | |
| TTGCAACATAGGGAAGCTGA+TGG | - | chr6_3:97808205-97808224 | None:intergenic | 45.0% | |
| GTAGCTGCAAGTTGCAACAT+AGG | - | chr6_3:97808216-97808235 | None:intergenic | 45.0% | |
| ! | GGTTTTACGCATCCGTGAAA+AGG | + | chr6_3:97808284-97808303 | Msa0967700:three_prime_UTR | 45.0% |
| GGAGATCATTCTCTTCCTGT+TGG | + | chr6_3:97808312-97808331 | Msa0967700:three_prime_UTR | 45.0% | |
| ! | CATGTTTTCACGGAGGAGAA+GGG | - | chr6_3:97808345-97808364 | None:intergenic | 45.0% |
| ! | TCAGGGTGACCATGTTTTCA+CGG | - | chr6_3:97808355-97808374 | None:intergenic | 45.0% |
| GTGTCTATTCAAGCCAGACT+TGG | + | chr6_3:97808509-97808528 | Msa0967700:three_prime_UTR | 45.0% | |
| CATGTCCGAATCCTTTCTCT+TGG | - | chr6_3:97808583-97808602 | None:intergenic | 45.0% | |
| AGAGAAGGTTATCCGTGCTT+AGG | + | chr6_3:97808687-97808706 | Msa0967700:three_prime_UTR | 45.0% | |
| GCGAAGTCATTGGAACTTGG+AGG | + | chr6_3:97805714-97805733 | Msa0967700:CDS | 50.0% | |
| TCATTGGAACTTGGAGGGAC+AGG | + | chr6_3:97805720-97805739 | Msa0967700:CDS | 50.0% | |
| CTCCCGACGAAGATAATCAG+AGG | + | chr6_3:97805775-97805794 | Msa0967700:CDS | 50.0% | |
| GTGAAAGAGCGGCTTAATGC+TGG | + | chr6_3:97805997-97806016 | Msa0967700:CDS | 50.0% | |
| CGGCTTAATGCTGGCACTAA+AGG | + | chr6_3:97806006-97806025 | Msa0967700:CDS | 50.0% | |
| ! | TGCTGGCACTAAAGGCATAG+AGG | + | chr6_3:97806014-97806033 | Msa0967700:CDS | 50.0% |
| ! | TGGCACTAAAGGCATAGAGG+AGG | + | chr6_3:97806017-97806036 | Msa0967700:CDS | 50.0% |
| GCACTTGGTTACATGGCTGT+TGG | + | chr6_3:97806060-97806079 | Msa0967700:CDS | 50.0% | |
| GCCTCACTCCACTTTCTCTA+TGG | + | chr6_3:97806702-97806721 | Msa0967700:intron | 50.0% | |
| GCTCAAGTGAAGTGTGCTCT+AGG | + | chr6_3:97807562-97807581 | Msa0967700:CDS | 50.0% | |
| AAAAACCCAGGGCCTGTACT+TGG | - | chr6_3:97807638-97807657 | None:intergenic | 50.0% | |
| ! | ACATAGGGAAGCTGATGGAC+TGG | - | chr6_3:97808200-97808219 | None:intergenic | 50.0% |
| ACGGATGCGTAAAACCTCCA+GGG | - | chr6_3:97808280-97808299 | None:intergenic | 50.0% | |
| !! | CGCATCCGTGAAAAGGCATT+TGG | + | chr6_3:97808291-97808310 | Msa0967700:three_prime_UTR | 50.0% |
| ! | CCATGTTTTCACGGAGGAGA+AGG | - | chr6_3:97808346-97808365 | None:intergenic | 50.0% |
| CCTTCTCCTCCGTGAAAACA+TGG | + | chr6_3:97808343-97808362 | Msa0967700:intron | 50.0% | |
| ATTCGGACATGAGAGTGAGC+AGG | + | chr6_3:97808592-97808611 | Msa0967700:three_prime_UTR | 50.0% | |
| AAAAGCTTCCCCTGCAGAGA+AGG | + | chr6_3:97808672-97808691 | Msa0967700:three_prime_UTR | 50.0% | |
| ACGGATAACCTTCTCTGCAG+GGG | - | chr6_3:97808683-97808702 | None:intergenic | 50.0% | |
| CACGGATAACCTTCTCTGCA+GGG | - | chr6_3:97808684-97808703 | None:intergenic | 50.0% | |
| !! | AAAGCGCCGTATTGGGCTGT+GGG | - | chr6_3:97805301-97805320 | None:intergenic | 55.0% |
| !! | TAAAGCGCCGTATTGGGCTG+TGG | - | chr6_3:97805302-97805321 | None:intergenic | 55.0% |
| GGGCTGTCTACATTGTGGAG+AGG | + | chr6_3:97806877-97806896 | Msa0967700:intron | 55.0% | |
| AGAAGCAGAGAAACTCGCCC+TGG | + | chr6_3:97808260-97808279 | Msa0967700:three_prime_UTR | 55.0% | |
| CACGGATGCGTAAAACCTCC+AGG | - | chr6_3:97808281-97808300 | None:intergenic | 55.0% | |
| ! | GGGTGACCATGTTTTCACGG+AGG | - | chr6_3:97808352-97808371 | None:intergenic | 55.0% |
| ATGCATGTCAGGGGAGGCTT+TGG | + | chr6_3:97808478-97808497 | Msa0967700:intron | 55.0% | |
| GCACGGATAACCTTCTCTGC+AGG | - | chr6_3:97808685-97808704 | None:intergenic | 55.0% | |
| AGCAGAGAAACTCGCCCTGG+AGG | + | chr6_3:97808263-97808282 | Msa0967700:three_prime_UTR | 60.0% | |
| AGGGGAACTGCTGTCTGCCT+TGG | + | chr6_3:97808841-97808860 | Msa0967700:three_prime_UTR | 60.0% | |
| TGGGGTCCAAGTACAGGCCC+TGG | + | chr6_3:97807629-97807648 | Msa0967700:intron | 65.0% | |
| GGGGTCCAAGTACAGGCCCT+GGG | + | chr6_3:97807630-97807649 | Msa0967700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 97805281 | 97808940 | 97805281 | ID=Msa0967700;Name=Msa0967700 |
| chr6_3 | mRNA | 97805281 | 97808940 | 97805281 | ID=Msa0967700-mRNA-1;Parent=Msa0967700;Name=Msa0967700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=100|0.75|0.66|1|0.75|0.66|9|643|409 |
| chr6_3 | exon | 97805281 | 97805430 | 97805281 | ID=Msa0967700-mRNA-1:exon:18205;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97805563 | 97805796 | 97805563 | ID=Msa0967700-mRNA-1:exon:18206;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97805891 | 97806116 | 97805891 | ID=Msa0967700-mRNA-1:exon:18207;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97806756 | 97806890 | 97806756 | ID=Msa0967700-mRNA-1:exon:18208;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97807180 | 97807397 | 97807180 | ID=Msa0967700-mRNA-1:exon:18209;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97807492 | 97807583 | 97807492 | ID=Msa0967700-mRNA-1:exon:18210;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97807732 | 97807867 | 97807732 | ID=Msa0967700-mRNA-1:exon:18211;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97808004 | 97808333 | 97808004 | ID=Msa0967700-mRNA-1:exon:18212;Parent=Msa0967700-mRNA-1 |
| chr6_3 | exon | 97808489 | 97808940 | 97808489 | ID=Msa0967700-mRNA-1:exon:18213;Parent=Msa0967700-mRNA-1 |
| chr6_3 | five_prime_UTR | 97805281 | 97805380 | 97805281 | ID=Msa0967700-mRNA-1:five_prime_utr;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97805381 | 97805430 | 97805381 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97805563 | 97805796 | 97805563 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97805891 | 97806116 | 97805891 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97806756 | 97806890 | 97806756 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97807180 | 97807397 | 97807180 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97807492 | 97807583 | 97807492 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97807732 | 97807867 | 97807732 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | CDS | 97808004 | 97808142 | 97808004 | ID=Msa0967700-mRNA-1:cds;Parent=Msa0967700-mRNA-1 |
| chr6_3 | three_prime_UTR | 97808143 | 97808333 | 97808143 | ID=Msa0967700-mRNA-1:three_prime_utr;Parent=Msa0967700-mRNA-1 |
| chr6_3 | three_prime_UTR | 97808489 | 97808940 | 97808489 | ID=Msa0967700-mRNA-1:three_prime_utr;Parent=Msa0967700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
