AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0716960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716960 MtrunA17_Chr5g0404751 96.899 129 4 0 1 129 1 129 9.24e-92 261
Msa0716960 MtrunA17_Chr2g0299021 59.223 103 42 0 24 126 74 176 2.13e-40 133
Msa0716960 MtrunA17_Chr7g0228311 45.556 90 49 0 40 129 10 99 1.78e-24 90.1
Msa0716960 MtrunA17_Chr3g0117411 43.182 88 50 0 42 129 27 114 9.71e-21 80.9
Msa0716960 MtrunA17_Chr1g0182971 41.304 92 53 1 36 126 86 177 5.40e-20 80.9
Msa0716960 MtrunA17_Chr3g0117391 42.353 85 49 0 42 126 30 114 1.75e-19 78.2
Msa0716960 MtrunA17_Chr7g0268761 38.372 86 52 1 45 129 13 98 1.48e-12 59.7
Msa0716960 MtrunA17_Chr7g0224091 38.636 88 53 1 43 129 32 119 4.96e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716960 AT1G77370.1 68.333 120 38 0 10 129 11 130 8.54e-55 168
Msa0716960 AT1G77370.2 56.164 146 38 1 10 129 11 156 7.17e-49 154
Msa0716960 AT5G20500.1 52.500 120 57 0 7 126 6 125 1.87e-41 134
Msa0716960 AT5G40370.1 45.977 87 47 0 40 126 10 96 1.04e-22 86.3
Msa0716960 AT5G40370.2 48.750 80 41 0 47 126 42 121 2.01e-20 80.9
Msa0716960 AT4G28730.1 44.565 92 50 1 36 126 73 164 2.39e-20 82.0
Msa0716960 AT2G20270.1 41.304 92 53 1 36 126 78 169 6.13e-19 78.2
Msa0716960 AT5G63030.1 42.683 82 47 0 45 126 31 112 6.46e-18 74.3
Msa0716960 AT4G28730.2 45.588 68 36 1 36 102 73 140 4.66e-13 62.0

Find 44 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCGTTGTCATTGTTAAT+TGG 0.231844 5_1:-10545095 Msa0716960:three_prime_UTR
AAATCAGTGTCGTGTCAAAT+TGG 0.237203 5_1:-10548037 Msa0716960:five_prime_UTR
TCAAATTCAGGGTGTTCTTC+TGG 0.247136 5_1:-10546276 Msa0716960:CDS
AGATGATGGGTATCAAATTC+AGG 0.269297 5_1:-10546288 Msa0716960:CDS
GGTTCCATTCTCAAGCAAAA+AGG 0.276134 5_1:+10547908 None:intergenic
GTCCCACAAGTGTTTGTCTA+TGG 0.290060 5_1:-10546233 Msa0716960:CDS
ATTTGACATTGGTTCTTTGT+AGG 0.328186 5_1:+10544899 None:intergenic
GACACGCGTGGAAAACAATA+AGG 0.342799 5_1:-10548077 None:intergenic
ACAGAACCAGACAAGCTAAA+AGG 0.346471 5_1:+10545202 None:intergenic
TACGTACGGGCAATAGGATT+TGG 0.352701 5_1:+10547818 None:intergenic
TATATATACGTACGGGCAAT+AGG 0.386425 5_1:+10547812 None:intergenic
GGTGTTCTTCTGGATTTGAT+TGG 0.395517 5_1:-10546266 Msa0716960:CDS
GGAAACTGAATTTGAAGCTT+CGG 0.429054 5_1:+10547887 None:intergenic
AATCAGTGTCGTGTCAAATT+GGG 0.440854 5_1:-10548036 Msa0716960:five_prime_UTR
TTTGTGCTTGTTTAGATGAT+GGG 0.450399 5_1:-10546301 Msa0716960:intron
AGCAGTGGAGCTCTAATTGT+TGG 0.456983 5_1:-10545123 Msa0716960:three_prime_UTR
AACAGAACTATTCTATTCAA+TGG 0.462801 5_1:+10544854 None:intergenic
TCCCATAGACAAACACTTGT+GGG 0.486540 5_1:+10546231 None:intergenic
GATGATGGGTATCAAATTCA+GGG 0.487362 5_1:-10546287 Msa0716960:CDS
ATCTATAATTTGTATGAATG+TGG 0.490361 5_1:-10545320 Msa0716960:three_prime_UTR
TCTATAATTTGTATGAATGT+GGG 0.491540 5_1:-10545319 Msa0716960:three_prime_UTR
ATTGAATCTATCTCAAGTAA+TGG 0.497398 5_1:-10544951 Msa0716960:three_prime_UTR
TTTGTCTATGGGAAGCATAT+TGG 0.501883 5_1:-10546221 Msa0716960:CDS
CGTGGAAAACAATAAGGGTC+TGG 0.507148 5_1:-10548071 None:intergenic
AAATCAAGCTCAACAACAAA+AGG 0.509148 5_1:+10547666 None:intergenic
GTCTATGGGAAGCATATTGG+TGG 0.513655 5_1:-10546218 Msa0716960:CDS
GGAGAAGATGGTGATTCTGT+TGG 0.515760 5_1:+10547839 None:intergenic
GCAATAGGATTTGGAGAAGA+TGG 0.516584 5_1:+10547827 None:intergenic
TCCCACAAGTGTTTGTCTAT+GGG 0.535106 5_1:-10546232 Msa0716960:CDS
AATCAAAGAAGTAAAACTAC+AGG 0.537670 5_1:-10544922 Msa0716960:three_prime_UTR
ACACGCGTGGAAAACAATAA+GGG 0.548482 5_1:-10548076 None:intergenic
AAGCATATTGGTGGATCAGA+TGG 0.559694 5_1:-10546209 Msa0716960:intron
GTTTCTGCAATTCACCACTC+TGG 0.562376 5_1:+10545389 None:intergenic
AAGACAAGACAATTTGACAT+TGG 0.563313 5_1:+10544888 None:intergenic
CTTCGATATACATGAAAATG+CGG 0.575457 5_1:+10545292 None:intergenic
CTATAATTTGTATGAATGTG+GGG 0.594049 5_1:-10545318 Msa0716960:three_prime_UTR
TTCGATATACATGAAAATGC+GGG 0.595061 5_1:+10545293 None:intergenic
CGAAGGTTTCAAGCTTCTAG+CGG 0.615435 5_1:-10545274 Msa0716960:three_prime_UTR
TTCCCATAGACAAACACTTG+TGG 0.621034 5_1:+10546230 None:intergenic
TGATTGTATACTTGAGACTG+AGG 0.636878 5_1:-10545352 Msa0716960:three_prime_UTR
GAAAGTACGATCATGAGCAG+TGG 0.651793 5_1:-10545138 Msa0716960:three_prime_UTR
GAAGAATGAAGATGTTACAG+TGG 0.663384 5_1:-10547968 Msa0716960:exon
GTTGTTGAGCTTGATTTGCG+AGG 0.668245 5_1:-10547660 Msa0716960:intron
CTCAGTGCTGCAGTCCAGAG+TGG 0.673667 5_1:-10545403 Msa0716960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGAATAATATTTTTTTT+GGG + chr5_1:10545478-10545497 None:intergenic 10.0%
!!! TTCAAGAATAATATTTTTTT+TGG + chr5_1:10545479-10545498 None:intergenic 10.0%
!!! ATAATTTTTATTGTTGAAAA+AGG + chr5_1:10545675-10545694 None:intergenic 10.0%
!! ACCTAAAAAATTATAATTTA+TGG - chr5_1:10545989-10546008 Msa0716960:intron 10.0%
!! CCTAAAAAATTATAATTTAT+GGG - chr5_1:10545990-10546009 Msa0716960:intron 10.0%
!!! ACTATTGTATTTATTTTTTA+TGG + chr5_1:10548046-10548065 None:intergenic 10.0%
!!! TATGTGTTTTGATATTTTTA+AGG - chr5_1:10545394-10545413 Msa0716960:CDS 15.0%
!! AATATTATTCTTGAATTAGT+CGG - chr5_1:10545484-10545503 Msa0716960:intron 15.0%
!! TAGCTCAATATTTATTATTT+GGG + chr5_1:10545531-10545550 None:intergenic 15.0%
!! ATTGATAGATTTATTTGTAT+TGG - chr5_1:10545612-10545631 Msa0716960:intron 15.0%
!! TAATCTCTAACAAAAAATTA+AGG + chr5_1:10545892-10545911 None:intergenic 15.0%
!!! CCCATAAATTATAATTTTTT+AGG + chr5_1:10545993-10546012 None:intergenic 15.0%
!! AATAATCTATATACATAAGA+GGG + chr5_1:10546178-10546197 None:intergenic 15.0%
!! TAATAATCTATATACATAAG+AGG + chr5_1:10546179-10546198 None:intergenic 15.0%
!!! AAGGGAATATTTATTATTTT+CGG + chr5_1:10547185-10547204 None:intergenic 15.0%
!!! TTTTTTTCCATATACTTTAA+AGG - chr5_1:10547276-10547295 Msa0716960:intron 15.0%
!! TATCTATATGTCATTATAAA+AGG - chr5_1:10547358-10547377 Msa0716960:intron 15.0%
!!! AATACTTTTTCATGTTTTTT+AGG - chr5_1:10547600-10547619 Msa0716960:intron 15.0%
!!! ATTAAGTTGTTTATCAAACA+AGG + chr5_1:10545257-10545276 None:intergenic 20.0%
!! AGCTCAATATTTATTATTTG+GGG + chr5_1:10545530-10545549 None:intergenic 20.0%
!! GTAGCTCAATATTTATTATT+TGG + chr5_1:10545532-10545551 None:intergenic 20.0%
!!! TTTTGCAACTAATTTTGTTT+GGG + chr5_1:10545555-10545574 None:intergenic 20.0%
!! ATAGTCATAGACAAATTAAA+TGG - chr5_1:10545702-10545721 Msa0716960:intron 20.0%
!!! AAATCGCTATTTTAAAATGT+TGG + chr5_1:10545835-10545854 None:intergenic 20.0%
!! AAACAGACGTATTAAATTTA+AGG + chr5_1:10546034-10546053 None:intergenic 20.0%
!! AAAAAATCCTTCTTTATAGT+TGG - chr5_1:10546057-10546076 Msa0716960:intron 20.0%
!! AATAACCTATATACATAAGA+GGG + chr5_1:10546263-10546282 None:intergenic 20.0%
!! AAATAACCTATATACATAAG+AGG + chr5_1:10546264-10546283 None:intergenic 20.0%
!! TCATATAGTTTAAGAACTAA+AGG + chr5_1:10547038-10547057 None:intergenic 20.0%
!! TAAACTATATGAAAATAACG+AGG - chr5_1:10547046-10547065 Msa0716960:intron 20.0%
!!! CTTATATTTTTGGATATAGA+GGG + chr5_1:10547100-10547119 None:intergenic 20.0%
!! CTCTATATCCAAAAATATAA+GGG - chr5_1:10547099-10547118 Msa0716960:intron 20.0%
!!! TGATAGAAAATTTTTATGAG+AGG - chr5_1:10547151-10547170 Msa0716960:intron 20.0%
!!! TATTTAGCCTTTAAAGTATA+TGG + chr5_1:10547286-10547305 None:intergenic 20.0%
!! TATGTCATTATAAAAGGTTA+AGG - chr5_1:10547364-10547383 Msa0716960:intron 20.0%
!!! ATCTATAATTTGTATGAATG+TGG - chr5_1:10547528-10547547 Msa0716960:intron 20.0%
!!! TCTATAATTTGTATGAATGT+GGG - chr5_1:10547529-10547548 Msa0716960:intron 20.0%
!!! ATGTTTTTTAGGTATTTACT+AGG - chr5_1:10547611-10547630 Msa0716960:intron 20.0%
!!! ATGTTTTCATTTTGTTCTAT+AGG - chr5_1:10547688-10547707 Msa0716960:CDS 20.0%
!!! AATTGTAGTTTTCAATAATC+TGG - chr5_1:10547781-10547800 Msa0716960:intron 20.0%
! AAGAGAGTTATATATACGTA+CGG + chr5_1:10545047-10545066 None:intergenic 25.0%
! TTCAATTATTATCACGTGTT+AGG - chr5_1:10545072-10545091 Msa0716960:three_prime_UTR 25.0%
! TCAATTATTATCACGTGTTA+GGG - chr5_1:10545073-10545092 Msa0716960:three_prime_UTR 25.0%
! ATGAAATTAATATGCTCTGT+CGG - chr5_1:10545304-10545323 Msa0716960:three_prime_UTR 25.0%
!!! TTTGCAACTAATTTTGTTTG+GGG + chr5_1:10545554-10545573 None:intergenic 25.0%
!! CTTTTGCAACTAATTTTGTT+TGG + chr5_1:10545556-10545575 None:intergenic 25.0%
!!! TTGTATTGGTTTGATACTTT+CGG - chr5_1:10545626-10545645 Msa0716960:intron 25.0%
! TGTGTAAAATAATTGTACAC+CGG - chr5_1:10546120-10546139 Msa0716960:intron 25.0%
! ATTCAAATAGTATACTTAGC+CGG + chr5_1:10546142-10546161 None:intergenic 25.0%
! TGTGTAAAATAATTGTACAC+CGG - chr5_1:10546120-10546139 Msa0716960:intron 25.0%
! ATTCAAATAGTATACTTAGC+CGG + chr5_1:10546142-10546161 None:intergenic 25.0%
! AAACAAAAAAACTGCTTTCA+TGG - chr5_1:10546362-10546381 Msa0716960:intron 25.0%
! AATGATAACAGTTGTCTATT+TGG + chr5_1:10546495-10546514 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG + chr5_1:10546764-10546783 None:intergenic 25.0%
! TATGAAAATAACGAGGAATT+TGG - chr5_1:10547053-10547072 Msa0716960:intron 25.0%
!!! CCTTATATTTTTGGATATAG+AGG + chr5_1:10547101-10547120 None:intergenic 25.0%
! CCTCTATATCCAAAAATATA+AGG - chr5_1:10547098-10547117 Msa0716960:intron 25.0%
! TATATCCAAAAATATAAGGG+TGG - chr5_1:10547102-10547121 Msa0716960:intron 25.0%
!! ACAAATTTTCACATACTCAA+GGG + chr5_1:10547203-10547222 None:intergenic 25.0%
!! ATACTTTAAAGGCTAAATAG+AGG - chr5_1:10547287-10547306 Msa0716960:intron 25.0%
! TAATGAAGGGATTAAATTGA+AGG - chr5_1:10547319-10547338 Msa0716960:intron 25.0%
!! CTATAATTTGTATGAATGTG+GGG - chr5_1:10547530-10547549 Msa0716960:intron 25.0%
! ATTTCGTTGTCATTGTTAAT+TGG - chr5_1:10547753-10547772 Msa0716960:intron 25.0%
! ATTGAATCTATCTCAAGTAA+TGG - chr5_1:10547897-10547916 Msa0716960:CDS 25.0%
! AATCAAAGAAGTAAAACTAC+AGG - chr5_1:10547926-10547945 Msa0716960:CDS 25.0%
! AACAGAACTATTCTATTCAA+TGG + chr5_1:10547997-10548016 None:intergenic 25.0%
!!! TGTTTTTGTACCAAACAAAA+TGG - chr5_1:10548013-10548032 Msa0716960:five_prime_UTR 25.0%
AGAGAGTTATATATACGTAC+GGG + chr5_1:10545046-10545065 None:intergenic 30.0%
! AATGTTTCTCTGATTTTCGT+AGG - chr5_1:10545114-10545133 Msa0716960:three_prime_UTR 30.0%
AAATCAAGCTCAACAACAAA+AGG + chr5_1:10545185-10545204 None:intergenic 30.0%
GACATTATTAAATGCATGCA+GGG - chr5_1:10545416-10545435 Msa0716960:intron 30.0%
ACATTATTAAATGCATGCAG+GGG - chr5_1:10545417-10545436 Msa0716960:intron 30.0%
!!! ATATTTTTTTTGGGTAGCCA+AGG + chr5_1:10545469-10545488 None:intergenic 30.0%
AGTCGGTATGTATTTATATC+CGG - chr5_1:10545501-10545520 Msa0716960:intron 30.0%
! TATTTATTATTTGGGGTAGC+CGG + chr5_1:10545523-10545542 None:intergenic 30.0%
!! AACAGTCAGTTGATGAAATT+AGG - chr5_1:10545790-10545809 Msa0716960:intron 30.0%
! TATTTTACACATGCATTCAG+CGG + chr5_1:10546111-10546130 None:intergenic 30.0%
!! TATATACATAAGAGGGTATC+AGG + chr5_1:10546171-10546190 None:intergenic 30.0%
!! TATATACATAAGAGGGTATC+AGG + chr5_1:10546171-10546190 None:intergenic 30.0%
TGATACCCTCTTATGTATAT+AGG - chr5_1:10546170-10546189 Msa0716960:intron 30.0%
TAACAGTTGTCTATTTGGAT+TGG + chr5_1:10546490-10546509 None:intergenic 30.0%
! TTTTGTGCTTGTTTAGATGA+TGG - chr5_1:10546546-10546565 Msa0716960:intron 30.0%
TTTGTGCTTGTTTAGATGAT+GGG - chr5_1:10546547-10546566 Msa0716960:intron 30.0%
!! TTCTTAGACTTTTGCTTTTC+TGG - chr5_1:10546673-10546692 Msa0716960:intron 30.0%
!! TCTTAGACTTTTGCTTTTCT+GGG - chr5_1:10546674-10546693 Msa0716960:intron 30.0%
TTTCATACTTAGTCCTTGTT+TGG - chr5_1:10546748-10546767 Msa0716960:intron 30.0%
! ACTTTCCACCCTTATATTTT+TGG + chr5_1:10547110-10547129 None:intergenic 30.0%
! GACAAATTTTCACATACTCA+AGG + chr5_1:10547204-10547223 None:intergenic 30.0%
CATTAGTACTTAAGATGCTA+GGG + chr5_1:10547235-10547254 None:intergenic 30.0%
TCATTAGTACTTAAGATGCT+AGG + chr5_1:10547236-10547255 None:intergenic 30.0%
TCTTAAGTACTAATGAGACA+AGG - chr5_1:10547240-10547259 Msa0716960:intron 30.0%
CTTAAGTACTAATGAGACAA+GGG - chr5_1:10547241-10547260 Msa0716960:intron 30.0%
TTAAGTACTAATGAGACAAG+GGG - chr5_1:10547242-10547261 Msa0716960:intron 30.0%
! AGAGGAGATAATGATAATGA+AGG - chr5_1:10547305-10547324 Msa0716960:intron 30.0%
! GAGGAGATAATGATAATGAA+GGG - chr5_1:10547306-10547325 Msa0716960:intron 30.0%
TAGATAGAGAAACACAAAGA+GGG + chr5_1:10547391-10547410 None:intergenic 30.0%
ATAGATAGAGAAACACAAAG+AGG + chr5_1:10547392-10547411 None:intergenic 30.0%
TTCGATATACATGAAAATGC+GGG + chr5_1:10547558-10547577 None:intergenic 30.0%
CTTCGATATACATGAAAATG+CGG + chr5_1:10547559-10547578 None:intergenic 30.0%
!! ATTTGACATTGGTTCTTTGT+AGG + chr5_1:10547952-10547971 None:intergenic 30.0%
AAGACAAGACAATTTGACAT+TGG + chr5_1:10547963-10547982 None:intergenic 30.0%
AAATCAGTGTCGTGTCAAAT+TGG - chr5_1:10544811-10544830 Msa0716960:three_prime_UTR 35.0%
AATCAGTGTCGTGTCAAATT+GGG - chr5_1:10544812-10544831 Msa0716960:three_prime_UTR 35.0%
GAAGAATGAAGATGTTACAG+TGG - chr5_1:10544880-10544899 Msa0716960:three_prime_UTR 35.0%
CTCAAGCAAAAAGGGTAAAA+CGG + chr5_1:10544934-10544953 None:intergenic 35.0%
! TTACCCTTTTTGCTTGAGAA+TGG - chr5_1:10544936-10544955 Msa0716960:three_prime_UTR 35.0%
GTTCCATTCTCAAGCAAAAA+GGG + chr5_1:10544942-10544961 None:intergenic 35.0%
! GGAAACTGAATTTGAAGCTT+CGG + chr5_1:10544964-10544983 None:intergenic 35.0%
!! GATTGCGTTTTGAACAAAAG+CGG + chr5_1:10544985-10545004 None:intergenic 35.0%
TATATATACGTACGGGCAAT+AGG + chr5_1:10545039-10545058 None:intergenic 35.0%
TAACGAGACAACACAATCAT+CGG + chr5_1:10545353-10545372 None:intergenic 35.0%
GGACATTATTAAATGCATGC+AGG - chr5_1:10545415-10545434 Msa0716960:intron 35.0%
! ATTGTTTTCGCGTAAGCTAT+AGG - chr5_1:10546300-10546319 Msa0716960:intron 35.0%
!! AGATGATGGGTATCAAATTC+AGG - chr5_1:10546560-10546579 Msa0716960:intron 35.0%
!! GATGATGGGTATCAAATTCA+GGG - chr5_1:10546561-10546580 Msa0716960:intron 35.0%
! TTTGTCTATGGGAAGCATAT+TGG - chr5_1:10546627-10546646 Msa0716960:intron 35.0%
! AACTAAAGGCTTGTTTGAAC+TGG + chr5_1:10547024-10547043 None:intergenic 35.0%
TTAAGATGCTAGGGATTAAC+AGG + chr5_1:10547226-10547245 None:intergenic 35.0%
TGATTGTATACTTGAGACTG+AGG - chr5_1:10547496-10547515 Msa0716960:intron 35.0%
! CGCATTTTCATGTATATCGA+AGG - chr5_1:10547557-10547576 Msa0716960:intron 35.0%
!! TGGTACAAAGCCATTTTGTT+TGG + chr5_1:10548026-10548045 None:intergenic 35.0%
GGTTCCATTCTCAAGCAAAA+AGG + chr5_1:10544943-10544962 None:intergenic 40.0%
GCAATAGGATTTGGAGAAGA+TGG + chr5_1:10545024-10545043 None:intergenic 40.0%
CTCGCGAAAAATTTATGCAG+GGG + chr5_1:10546083-10546102 None:intergenic 40.0%
GCTCGCGAAAAATTTATGCA+GGG + chr5_1:10546084-10546103 None:intergenic 40.0%
AGCTCGCGAAAAATTTATGC+AGG + chr5_1:10546085-10546104 None:intergenic 40.0%
! TCAAATTCAGGGTGTTCTTC+TGG - chr5_1:10546572-10546591 Msa0716960:intron 40.0%
GGTGTTCTTCTGGATTTGAT+TGG - chr5_1:10546582-10546601 Msa0716960:intron 40.0%
TCCCACAAGTGTTTGTCTAT+GGG - chr5_1:10546616-10546635 Msa0716960:intron 40.0%
TCCCATAGACAAACACTTGT+GGG + chr5_1:10546620-10546639 None:intergenic 40.0%
TTCCCATAGACAAACACTTG+TGG + chr5_1:10546621-10546640 None:intergenic 40.0%
! AAGCATATTGGTGGATCAGA+TGG - chr5_1:10546639-10546658 Msa0716960:intron 40.0%
GTGGAAAGTGAGAGAAGATA+GGG - chr5_1:10547121-10547140 Msa0716960:intron 40.0%
!!! ACATGTCCTTTTAGCTTGTC+TGG - chr5_1:10547640-10547659 Msa0716960:intron 40.0%
ACAGAACCAGACAAGCTAAA+AGG + chr5_1:10547649-10547668 None:intergenic 40.0%
GGAGAAGATGGTGATTCTGT+TGG + chr5_1:10545012-10545031 None:intergenic 45.0%
TACGTACGGGCAATAGGATT+TGG + chr5_1:10545033-10545052 None:intergenic 45.0%
!! GTTGTTGAGCTTGATTTGCG+AGG - chr5_1:10545188-10545207 Msa0716960:three_prime_UTR 45.0%
ACTGCTTTCATGGTCTGTCA+TGG - chr5_1:10546372-10546391 Msa0716960:intron 45.0%
GTCCCACAAGTGTTTGTCTA+TGG - chr5_1:10546615-10546634 Msa0716960:intron 45.0%
! GTCTATGGGAAGCATATTGG+TGG - chr5_1:10546630-10546649 Msa0716960:intron 45.0%
AGGGATGCATGTTTGAGAGA+GGG + chr5_1:10547081-10547100 None:intergenic 45.0%
GGTGGAAAGTGAGAGAAGAT+AGG - chr5_1:10547120-10547139 Msa0716960:intron 45.0%
GTTTCTGCAATTCACCACTC+TGG + chr5_1:10547462-10547481 None:intergenic 45.0%
CGAAGGTTTCAAGCTTCTAG+CGG - chr5_1:10547574-10547593 Msa0716960:intron 45.0%
! GAAAGTACGATCATGAGCAG+TGG - chr5_1:10547710-10547729 Msa0716960:CDS 45.0%
! AGCAGTGGAGCTCTAATTGT+TGG - chr5_1:10547725-10547744 Msa0716960:intron 45.0%
!!! AAAATTGAATAATTTTTTTA+AGG - chr5_1:10545961-10545980 Msa0716960:intron 5.0%
GCAGGGGCCAACTATAAAGA+AGG + chr5_1:10546067-10546086 None:intergenic 50.0%
GAGGGATGCATGTTTGAGAG+AGG + chr5_1:10547082-10547101 None:intergenic 50.0%
! AGGGGCGTAGCCCTTCATAT+GGG - chr5_1:10545435-10545454 Msa0716960:intron 55.0%
GCGTAGCCCTTCATATGGGA+GGG - chr5_1:10545439-10545458 Msa0716960:intron 55.0%
CGTAGCCCTTCATATGGGAG+GGG - chr5_1:10545440-10545459 Msa0716960:intron 55.0%
GGCTACCCCTCCCATATGAA+GGG + chr5_1:10545448-10545467 None:intergenic 55.0%
AGGCTACCCCTCCCATATGA+AGG + chr5_1:10545449-10545468 None:intergenic 55.0%
TCATATGGGAGGGGTAGCCT+TGG - chr5_1:10545449-10545468 Msa0716960:intron 55.0%
! CAGGGGCGTAGCCCTTCATA+TGG - chr5_1:10545434-10545453 Msa0716960:intron 60.0%
GGCGTAGCCCTTCATATGGG+AGG - chr5_1:10545438-10545457 Msa0716960:intron 60.0%
CTCAGTGCTGCAGTCCAGAG+TGG - chr5_1:10547445-10547464 Msa0716960:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 10544783 10548087 10544783 ID=Msa0716960;Name=Msa0716960
chr5_1 mRNA 10544783 10548087 10544783 ID=Msa0716960-mRNA-1;Parent=Msa0716960;Name=Msa0716960-mRNA-1;_AED=0.17;_eAED=0.17;_QI=102|1|1|1|1|1|4|589|129
chr5_1 exon 10544783 10545427 10544783 ID=Msa0716960-mRNA-1:exon:4316;Parent=Msa0716960-mRNA-1
chr5_1 exon 10546210 10546308 10546210 ID=Msa0716960-mRNA-1:exon:4315;Parent=Msa0716960-mRNA-1
chr5_1 exon 10547661 10547734 10547661 ID=Msa0716960-mRNA-1:exon:4314;Parent=Msa0716960-mRNA-1
chr5_1 exon 10547825 10548087 10547825 ID=Msa0716960-mRNA-1:exon:4313;Parent=Msa0716960-mRNA-1
chr5_1 five_prime_UTR 10547986 10548087 10547986 ID=Msa0716960-mRNA-1:five_prime_utr;Parent=Msa0716960-mRNA-1
chr5_1 CDS 10547825 10547985 10547825 ID=Msa0716960-mRNA-1:cds;Parent=Msa0716960-mRNA-1
chr5_1 CDS 10547661 10547734 10547661 ID=Msa0716960-mRNA-1:cds;Parent=Msa0716960-mRNA-1
chr5_1 CDS 10546210 10546308 10546210 ID=Msa0716960-mRNA-1:cds;Parent=Msa0716960-mRNA-1
chr5_1 CDS 10545372 10545427 10545372 ID=Msa0716960-mRNA-1:cds;Parent=Msa0716960-mRNA-1
chr5_1 three_prime_UTR 10544783 10545371 10544783 ID=Msa0716960-mRNA-1:three_prime_utr;Parent=Msa0716960-mRNA-1
Gene Sequence

>Msa0716960

ATGAAGATGTTACAGTGGAGCATGTTCATAACTCTCACGTTATTGACCGTTTTACCCTTTTTGCTTGAGAATGGAACCGAAGCTTCAAATTCAGTTTCCGCTTTTGTTCAAAACGCAATCTACTCCAACAGAATCACCATCTTCTCCAAATCCTATTGCCCGTATTGTTTACGTGCTAAACGTGTTTTTGTTGAACTAAATGAGCAACCTTTTGTTGTTGAGCTTGATTTGCGAGATGATGGGTATCAAATTCAGGGTGTTCTTCTGGATTTGATTGGTAGAAGAACAGTCCCACAAGTGTTTGTCTATGGGAAGCATATTGGTGGATCAGATGATCTCAGTGCTGCAGTCCAGAGTGGTGAATTGCAGAAACTTCTCAAATCAAGTTGA

Protein sequence

>Msa0716960

MKMLQWSMFITLTLLTVLPFLLENGTEASNSVSAFVQNAIYSNRITIFSKSYCPYCLRAKRVFVELNEQPFVVELDLRDDGYQIQGVLLDLIGRRTVPQVFVYGKHIGGSDDLSAAVQSGELQKLLKSS*