AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449830 MtrunA17_Chr3g0093771 97.959 98 2 0 1 98 25 122 2.84e-67 197
Msa0449830 MtrunA17_Chr8g0354141 64.286 98 34 1 1 97 38 135 4.16e-40 132
Msa0449830 MtrunA17_Chr5g0441261 63.000 100 34 1 1 97 1 100 1.07e-39 127
Msa0449830 MtrunA17_Chr3g0097041 48.936 94 48 0 4 97 62 155 1.64e-29 103
Msa0449830 MtrunA17_Chr4g0076001 42.667 75 43 0 15 89 38 112 3.27e-16 68.2
Msa0449830 MtrunA17_Chr3g0096881 46.250 80 40 2 20 97 78 156 1.30e-14 66.6
Msa0449830 MtrunA17_Chr2g0290101 42.254 71 41 0 22 92 46 116 1.20e-12 58.9
Msa0449830 MtrunA17_Chr8g0386751 36.709 79 50 0 8 86 62 140 1.69e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449830 AT3G12490.1 69.072 97 30 0 1 97 1 97 1.75e-45 144
Msa0449830 AT3G12490.2 69.072 97 30 0 1 97 34 130 1.55e-44 144
Msa0449830 AT2G40880.1 63.218 87 32 0 4 90 35 121 7.77e-38 123
Msa0449830 AT5G12140.1 56.044 91 40 0 4 94 10 100 3.46e-34 113
Msa0449830 AT5G05110.1 55.682 88 38 1 4 90 45 132 2.08e-27 100
Msa0449830 AT5G47550.1 38.571 70 42 1 22 90 45 114 1.25e-11 57.0
Msa0449830 AT4G16500.2 42.254 71 40 1 21 90 45 115 2.99e-11 55.8
Msa0449830 AT4G16500.1 42.254 71 40 1 21 90 45 115 2.99e-11 55.8

Find 18 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGACTGTTCTGGTTTCC+TGG 0.297008 3_3:-34641932 None:intergenic
AAAAGATGGAGTGAATAAAA+AGG 0.356439 3_3:+34643557 Msa0449830:CDS
CATCGATCGCAAGACTGTTC+TGG 0.359811 3_3:-34641940 None:intergenic
GGTGGAGTTCGCGATGTTCC+AGG 0.367977 3_3:+34641914 Msa0449830:CDS
CATACACCACATCACTTTAG+AGG 0.393728 3_3:+34643533 Msa0449830:CDS
GGTTTATGAAGCCAAGGTTT+GGG 0.416419 3_3:+34643578 Msa0449830:CDS
AGGTTTATGAAGCCAAGGTT+TGG 0.435602 3_3:+34643577 Msa0449830:CDS
GCTAAAGAGCAAGTGGTTGC+TGG 0.452937 3_3:+34643507 Msa0449830:CDS
CCAAGGTTTGGGAAAAGTCT+TGG 0.461362 3_3:+34643589 Msa0449830:CDS
CTCTAAAGTGATGTGGTGTA+TGG 0.517466 3_3:-34643532 None:intergenic
ATCACTTTAGAGGTAAAAGA+TGG 0.523463 3_3:+34643543 Msa0449830:CDS
AGTTAAGCGCTTTACTGCGC+AGG 0.531913 3_3:-34643657 None:intergenic
AAAGTCTTGGATGAACTTCA+AGG 0.534205 3_3:+34643602 Msa0449830:CDS
AGAAGAATGGCAACGCTTGG+TGG 0.543963 3_3:+34641896 None:intergenic
AGAAGAAGAATGGCAACGCT+TGG 0.566845 3_3:+34641893 None:intergenic
CAGAACAGTCTTGCGATCGA+TGG 0.591248 3_3:+34641941 Msa0449830:CDS
GATAAGTGCTAAAGAGCAAG+TGG 0.632798 3_3:+34643500 Msa0449830:CDS
GTCTTGGATGAACTTCAAGG+AGG 0.758137 3_3:+34643605 Msa0449830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATAAATAATAAAAAATCT+GGG - chr3_3:34642203-34642222 None:intergenic 10.0%
!! TTGATAAATAATAAAAAATC+TGG - chr3_3:34642204-34642223 None:intergenic 10.0%
!! GAACAAAATAAATAAATAAA+CGG - chr3_3:34643361-34643380 None:intergenic 10.0%
!!! TTTTATCATTTTTATTTAGT+TGG + chr3_3:34643437-34643456 Msa0449830:intron 10.0%
!! TGATAAATAATAAAAAATCT+GGG - chr3_3:34642203-34642222 None:intergenic 10.0%
!! TTGATAAATAATAAAAAATC+TGG - chr3_3:34642204-34642223 None:intergenic 10.0%
!! GAACAAAATAAATAAATAAA+CGG - chr3_3:34643361-34643380 None:intergenic 10.0%
!!! TTTTATCATTTTTATTTAGT+TGG + chr3_3:34643437-34643456 Msa0449830:intron 10.0%
!! ATACAAAATCATACTTATTT+GGG - chr3_3:34642112-34642131 None:intergenic 15.0%
!! AATACAAAATCATACTTATT+TGG - chr3_3:34642113-34642132 None:intergenic 15.0%
!! TAAAAAAAATTACAAGATGA+AGG - chr3_3:34642140-34642159 None:intergenic 15.0%
!!! TTTTTAGTAAATATTCGATT+TGG + chr3_3:34642154-34642173 Msa0449830:intron 15.0%
!!! TCTCAAATTTTTTATTAGAA+AGG + chr3_3:34643061-34643080 Msa0449830:intron 15.0%
!!! ATTTTGAGAAATAGTAAAAT+TGG + chr3_3:34643165-34643184 Msa0449830:intron 15.0%
!! ATACAAAATCATACTTATTT+GGG - chr3_3:34642112-34642131 None:intergenic 15.0%
!! AATACAAAATCATACTTATT+TGG - chr3_3:34642113-34642132 None:intergenic 15.0%
!! TAAAAAAAATTACAAGATGA+AGG - chr3_3:34642140-34642159 None:intergenic 15.0%
!!! TTTTTAGTAAATATTCGATT+TGG + chr3_3:34642154-34642173 Msa0449830:intron 15.0%
!!! TCTCAAATTTTTTATTAGAA+AGG + chr3_3:34643061-34643080 Msa0449830:intron 15.0%
!!! ATTTTGAGAAATAGTAAAAT+TGG + chr3_3:34643165-34643184 Msa0449830:intron 15.0%
!! TAATCAAGTTATGTTATGAA+GGG - chr3_3:34642026-34642045 None:intergenic 20.0%
!! ATAATCAAGTTATGTTATGA+AGG - chr3_3:34642027-34642046 None:intergenic 20.0%
!!! TTTTTTGTAGAGATTAAACT+GGG - chr3_3:34642326-34642345 None:intergenic 20.0%
!!! ATTTTTTGTAGAGATTAAAC+TGG - chr3_3:34642327-34642346 None:intergenic 20.0%
!!! ATTAATACCAAATTAGTCTT+TGG - chr3_3:34642397-34642416 None:intergenic 20.0%
!! TTAACAACTTACTCTTAATT+AGG + chr3_3:34642796-34642815 Msa0449830:intron 20.0%
!! ATAGAAAATGGATAAACTTA+AGG - chr3_3:34642823-34642842 None:intergenic 20.0%
!! ACTTGATGAATATTTCAAAA+AGG - chr3_3:34642907-34642926 None:intergenic 20.0%
!!! AATAGTAAAATTGGTTTTTG+AGG + chr3_3:34643174-34643193 Msa0449830:intron 20.0%
!! AATAAATAAATAAACGGCTT+TGG - chr3_3:34643355-34643374 None:intergenic 20.0%
!!! TGCAATTTTCTTTAGTTTTT+TGG + chr3_3:34643405-34643424 Msa0449830:intron 20.0%
!! TAATCAAGTTATGTTATGAA+GGG - chr3_3:34642026-34642045 None:intergenic 20.0%
!! ATAATCAAGTTATGTTATGA+AGG - chr3_3:34642027-34642046 None:intergenic 20.0%
!!! TTTTTTGTAGAGATTAAACT+GGG - chr3_3:34642326-34642345 None:intergenic 20.0%
!!! ATTTTTTGTAGAGATTAAAC+TGG - chr3_3:34642327-34642346 None:intergenic 20.0%
!!! ATTAATACCAAATTAGTCTT+TGG - chr3_3:34642397-34642416 None:intergenic 20.0%
!! TTAACAACTTACTCTTAATT+AGG + chr3_3:34642796-34642815 Msa0449830:intron 20.0%
!! ATAGAAAATGGATAAACTTA+AGG - chr3_3:34642823-34642842 None:intergenic 20.0%
!! ACTTGATGAATATTTCAAAA+AGG - chr3_3:34642907-34642926 None:intergenic 20.0%
!!! AATAGTAAAATTGGTTTTTG+AGG + chr3_3:34643174-34643193 Msa0449830:intron 20.0%
!! AATAAATAAATAAACGGCTT+TGG - chr3_3:34643355-34643374 None:intergenic 20.0%
!!! TGCAATTTTCTTTAGTTTTT+TGG + chr3_3:34643405-34643424 Msa0449830:intron 20.0%
!! ATAAAAAATCTGGGTTTTTG+AGG - chr3_3:34642194-34642213 None:intergenic 25.0%
! AAAATTCACCAGTGAATAAT+TGG + chr3_3:34642228-34642247 Msa0449830:intron 25.0%
!!! CCAGACTAATATTTTTTTCT+CGG - chr3_3:34642370-34642389 None:intergenic 25.0%
! ACAAAATTATGAGAACCAAT+TGG + chr3_3:34642427-34642446 Msa0449830:intron 25.0%
! CAAAATTATGAGAACCAATT+GGG + chr3_3:34642428-34642447 Msa0449830:intron 25.0%
! ATAATGCATAATATATGCAG+CGG + chr3_3:34642558-34642577 Msa0449830:intron 25.0%
! AATATAGAGACTTAACTGAT+AGG - chr3_3:34642776-34642795 None:intergenic 25.0%
! AAGACTAAAGTGATAGAAAA+TGG - chr3_3:34642835-34642854 None:intergenic 25.0%
! TTGAAATATTCATCAAGTCA+AGG + chr3_3:34642909-34642928 Msa0449830:intron 25.0%
! TAATTGTTGAATCTATCGAT+TGG + chr3_3:34643015-34643034 Msa0449830:intron 25.0%
! AAAAGATGGAGTGAATAAAA+AGG + chr3_3:34643557-34643576 Msa0449830:CDS 25.0%
!! ATAAAAAATCTGGGTTTTTG+AGG - chr3_3:34642194-34642213 None:intergenic 25.0%
! AAAATTCACCAGTGAATAAT+TGG + chr3_3:34642228-34642247 Msa0449830:intron 25.0%
!!! CCAGACTAATATTTTTTTCT+CGG - chr3_3:34642370-34642389 None:intergenic 25.0%
! ACAAAATTATGAGAACCAAT+TGG + chr3_3:34642427-34642446 Msa0449830:intron 25.0%
! CAAAATTATGAGAACCAATT+GGG + chr3_3:34642428-34642447 Msa0449830:intron 25.0%
! ATAATGCATAATATATGCAG+CGG + chr3_3:34642558-34642577 Msa0449830:intron 25.0%
! AATATAGAGACTTAACTGAT+AGG - chr3_3:34642776-34642795 None:intergenic 25.0%
! AAGACTAAAGTGATAGAAAA+TGG - chr3_3:34642835-34642854 None:intergenic 25.0%
! TTGAAATATTCATCAAGTCA+AGG + chr3_3:34642909-34642928 Msa0449830:intron 25.0%
! TAATTGTTGAATCTATCGAT+TGG + chr3_3:34643015-34643034 Msa0449830:intron 25.0%
! AAAAGATGGAGTGAATAAAA+AGG + chr3_3:34643557-34643576 Msa0449830:CDS 25.0%
TGAAGAACACAACAAAAAAC+AGG + chr3_3:34641982-34642001 Msa0449830:CDS 30.0%
TGAATTCTCCAATTATTCAC+TGG - chr3_3:34642239-34642258 None:intergenic 30.0%
CCGAGAAAAAAATATTAGTC+TGG + chr3_3:34642367-34642386 Msa0449830:intron 30.0%
AAAATGAGAAAAGACCCAAT+TGG - chr3_3:34642445-34642464 None:intergenic 30.0%
TAATGCATAATATATGCAGC+GGG + chr3_3:34642559-34642578 Msa0449830:intron 30.0%
!!! TTTTTCAAGGTGAATAAGTG+GGG - chr3_3:34642606-34642625 None:intergenic 30.0%
!!! CTTTTTCAAGGTGAATAAGT+GGG - chr3_3:34642607-34642626 None:intergenic 30.0%
!! CTAGAAATTCACCTTTTTCA+AGG - chr3_3:34642619-34642638 None:intergenic 30.0%
!!! TTTGTTTTTGTCAAAGAACC+CGG - chr3_3:34642645-34642664 None:intergenic 30.0%
TTATGAGTGGTATGTCAAAA+CGG + chr3_3:34642697-34642716 Msa0449830:intron 30.0%
! TGGTTTTCTTGGTAAAAATC+TGG + chr3_3:34642973-34642992 Msa0449830:intron 30.0%
AAAGAGTGAAGTTACATTCA+AGG - chr3_3:34643296-34643315 None:intergenic 30.0%
TCTTTCAGTACTAAATGACT+TGG + chr3_3:34643311-34643330 Msa0449830:intron 30.0%
!!! AAATAAACGGCTTTGGATTT+TGG - chr3_3:34643348-34643367 None:intergenic 30.0%
! ATCACTTTAGAGGTAAAAGA+TGG + chr3_3:34643543-34643562 Msa0449830:CDS 30.0%
TAAAAAGGTTTATGAAGCCA+AGG + chr3_3:34643572-34643591 Msa0449830:CDS 30.0%
TGAAGAACACAACAAAAAAC+AGG + chr3_3:34641982-34642001 Msa0449830:CDS 30.0%
TGAATTCTCCAATTATTCAC+TGG - chr3_3:34642239-34642258 None:intergenic 30.0%
CCGAGAAAAAAATATTAGTC+TGG + chr3_3:34642367-34642386 Msa0449830:intron 30.0%
AAAATGAGAAAAGACCCAAT+TGG - chr3_3:34642445-34642464 None:intergenic 30.0%
TAATGCATAATATATGCAGC+GGG + chr3_3:34642559-34642578 Msa0449830:intron 30.0%
!!! TTTTTCAAGGTGAATAAGTG+GGG - chr3_3:34642606-34642625 None:intergenic 30.0%
!!! CTTTTTCAAGGTGAATAAGT+GGG - chr3_3:34642607-34642626 None:intergenic 30.0%
!! CTAGAAATTCACCTTTTTCA+AGG - chr3_3:34642619-34642638 None:intergenic 30.0%
!!! TTTGTTTTTGTCAAAGAACC+CGG - chr3_3:34642645-34642664 None:intergenic 30.0%
TTATGAGTGGTATGTCAAAA+CGG + chr3_3:34642697-34642716 Msa0449830:intron 30.0%
! TGGTTTTCTTGGTAAAAATC+TGG + chr3_3:34642973-34642992 Msa0449830:intron 30.0%
AAAGAGTGAAGTTACATTCA+AGG - chr3_3:34643296-34643315 None:intergenic 30.0%
TCTTTCAGTACTAAATGACT+TGG + chr3_3:34643311-34643330 Msa0449830:intron 30.0%
!!! AAATAAACGGCTTTGGATTT+TGG - chr3_3:34643348-34643367 None:intergenic 30.0%
! ATCACTTTAGAGGTAAAAGA+TGG + chr3_3:34643543-34643562 Msa0449830:CDS 30.0%
TAAAAAGGTTTATGAAGCCA+AGG + chr3_3:34643572-34643591 Msa0449830:CDS 30.0%
! ATTTGGGACAAAACGATCAT+CGG - chr3_3:34642096-34642115 None:intergenic 35.0%
!! GGTTTTTGAGGAAAATTGTG+AGG - chr3_3:34642182-34642201 None:intergenic 35.0%
!!! TAGGGAGTAGTTTTTTCTCT+TGG + chr3_3:34642483-34642502 Msa0449830:intron 35.0%
!!! CCTTTTTCAAGGTGAATAAG+TGG - chr3_3:34642608-34642627 None:intergenic 35.0%
CCACTTATTCACCTTGAAAA+AGG + chr3_3:34642605-34642624 Msa0449830:intron 35.0%
ATTTAGTTAACCACCGAAGT+AGG + chr3_3:34642665-34642684 Msa0449830:intron 35.0%
ATAATCTCAAGGACCTACTT+CGG - chr3_3:34642681-34642700 None:intergenic 35.0%
ACATACCACTCATAATCTCA+AGG - chr3_3:34642692-34642711 None:intergenic 35.0%
TAACTGATAGGAGCAATAAG+TGG - chr3_3:34642764-34642783 None:intergenic 35.0%
ATTGCAGGACACTCTTAAAT+AGG - chr3_3:34642936-34642955 None:intergenic 35.0%
!! GACTAATTTGGTGGTTTTCT+TGG + chr3_3:34642962-34642981 Msa0449830:intron 35.0%
AATTTGAGAGATCTCACTGA+AGG - chr3_3:34643050-34643069 None:intergenic 35.0%
TGTTCCTTAAACAAGATCAC+AGG - chr3_3:34643093-34643112 None:intergenic 35.0%
CCAACACTACATTGTTTCAA+TGG - chr3_3:34643127-34643146 None:intergenic 35.0%
CCATTGAAACAATGTAGTGT+TGG + chr3_3:34643124-34643143 Msa0449830:intron 35.0%
TGTATAAAGTTTACGATGCG+AGG - chr3_3:34643233-34643252 None:intergenic 35.0%
! TTTTATGCAGAATGCACTTC+TGG + chr3_3:34643464-34643483 Msa0449830:intron 35.0%
!!! ATGCACTTCTGGAATTTTCA+AGG + chr3_3:34643475-34643494 Msa0449830:CDS 35.0%
!!! TGCACTTCTGGAATTTTCAA+GGG + chr3_3:34643476-34643495 Msa0449830:CDS 35.0%
!!! CTTTTACCTCTAAAGTGATG+TGG - chr3_3:34643542-34643561 None:intergenic 35.0%
AAAGTCTTGGATGAACTTCA+AGG + chr3_3:34643602-34643621 Msa0449830:CDS 35.0%
! ATTTGGGACAAAACGATCAT+CGG - chr3_3:34642096-34642115 None:intergenic 35.0%
!! GGTTTTTGAGGAAAATTGTG+AGG - chr3_3:34642182-34642201 None:intergenic 35.0%
!!! TAGGGAGTAGTTTTTTCTCT+TGG + chr3_3:34642483-34642502 Msa0449830:intron 35.0%
!!! CCTTTTTCAAGGTGAATAAG+TGG - chr3_3:34642608-34642627 None:intergenic 35.0%
CCACTTATTCACCTTGAAAA+AGG + chr3_3:34642605-34642624 Msa0449830:intron 35.0%
ATTTAGTTAACCACCGAAGT+AGG + chr3_3:34642665-34642684 Msa0449830:intron 35.0%
ATAATCTCAAGGACCTACTT+CGG - chr3_3:34642681-34642700 None:intergenic 35.0%
ACATACCACTCATAATCTCA+AGG - chr3_3:34642692-34642711 None:intergenic 35.0%
TAACTGATAGGAGCAATAAG+TGG - chr3_3:34642764-34642783 None:intergenic 35.0%
ATTGCAGGACACTCTTAAAT+AGG - chr3_3:34642936-34642955 None:intergenic 35.0%
!! GACTAATTTGGTGGTTTTCT+TGG + chr3_3:34642962-34642981 Msa0449830:intron 35.0%
AATTTGAGAGATCTCACTGA+AGG - chr3_3:34643050-34643069 None:intergenic 35.0%
TGTTCCTTAAACAAGATCAC+AGG - chr3_3:34643093-34643112 None:intergenic 35.0%
CCAACACTACATTGTTTCAA+TGG - chr3_3:34643127-34643146 None:intergenic 35.0%
CCATTGAAACAATGTAGTGT+TGG + chr3_3:34643124-34643143 Msa0449830:intron 35.0%
TGTATAAAGTTTACGATGCG+AGG - chr3_3:34643233-34643252 None:intergenic 35.0%
! TTTTATGCAGAATGCACTTC+TGG + chr3_3:34643464-34643483 Msa0449830:intron 35.0%
!!! ATGCACTTCTGGAATTTTCA+AGG + chr3_3:34643475-34643494 Msa0449830:CDS 35.0%
!!! TGCACTTCTGGAATTTTCAA+GGG + chr3_3:34643476-34643495 Msa0449830:CDS 35.0%
!!! CTTTTACCTCTAAAGTGATG+TGG - chr3_3:34643542-34643561 None:intergenic 35.0%
AAAGTCTTGGATGAACTTCA+AGG + chr3_3:34643602-34643621 Msa0449830:CDS 35.0%
CAATATCGAGCTAATGCTCA+GGG + chr3_3:34642286-34642305 Msa0449830:intron 40.0%
AATATCGAGCTAATGCTCAG+GGG + chr3_3:34642287-34642306 Msa0449830:intron 40.0%
TGGTGTGCCAAAGACTAATT+TGG + chr3_3:34642387-34642406 Msa0449830:intron 40.0%
ACTGAGTTAAGCTCAATGGA+CGG - chr3_3:34642524-34642543 None:intergenic 40.0%
TCCATTGAGCTTAACTCAGT+TGG + chr3_3:34642524-34642543 Msa0449830:intron 40.0%
ACCAACTGAGTTAAGCTCAA+TGG - chr3_3:34642528-34642547 None:intergenic 40.0%
TTGAGCTTAACTCAGTTGGT+AGG + chr3_3:34642528-34642547 Msa0449830:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG + chr3_3:34642529-34642548 Msa0449830:intron 40.0%
!! AAAGGTGAATTTCTAGCCAC+CGG + chr3_3:34642623-34642642 Msa0449830:intron 40.0%
TAGGTCCTTGAGATTATGAG+TGG + chr3_3:34642684-34642703 Msa0449830:intron 40.0%
CCAACTTGACACCTTAATAG+AGG - chr3_3:34642728-34642747 None:intergenic 40.0%
! CCTCTATTAAGGTGTCAAGT+TGG + chr3_3:34642725-34642744 Msa0449830:intron 40.0%
AAATTAGTCCCTGACATTGC+AGG - chr3_3:34642951-34642970 None:intergenic 40.0%
TGCAATGTCAGGGACTAATT+TGG + chr3_3:34642950-34642969 Msa0449830:intron 40.0%
AATGTCAGGGACTAATTTGG+TGG + chr3_3:34642953-34642972 Msa0449830:intron 40.0%
!! GAATCTATCGATTGGTCTAG+AGG + chr3_3:34643023-34643042 Msa0449830:intron 40.0%
! CGAACCTGTGATCTTGTTTA+AGG + chr3_3:34643086-34643105 Msa0449830:intron 40.0%
GACTGCTAGATTCATACAAG+AGG + chr3_3:34643270-34643289 Msa0449830:intron 40.0%
GATAAGTGCTAAAGAGCAAG+TGG + chr3_3:34643500-34643519 Msa0449830:CDS 40.0%
!! CTCTAAAGTGATGTGGTGTA+TGG - chr3_3:34643535-34643554 None:intergenic 40.0%
CATACACCACATCACTTTAG+AGG + chr3_3:34643533-34643552 Msa0449830:CDS 40.0%
AGGTTTATGAAGCCAAGGTT+TGG + chr3_3:34643577-34643596 Msa0449830:CDS 40.0%
GGTTTATGAAGCCAAGGTTT+GGG + chr3_3:34643578-34643597 Msa0449830:CDS 40.0%
CAATATCGAGCTAATGCTCA+GGG + chr3_3:34642286-34642305 Msa0449830:intron 40.0%
AATATCGAGCTAATGCTCAG+GGG + chr3_3:34642287-34642306 Msa0449830:intron 40.0%
TGGTGTGCCAAAGACTAATT+TGG + chr3_3:34642387-34642406 Msa0449830:intron 40.0%
ACTGAGTTAAGCTCAATGGA+CGG - chr3_3:34642524-34642543 None:intergenic 40.0%
TCCATTGAGCTTAACTCAGT+TGG + chr3_3:34642524-34642543 Msa0449830:intron 40.0%
ACCAACTGAGTTAAGCTCAA+TGG - chr3_3:34642528-34642547 None:intergenic 40.0%
TTGAGCTTAACTCAGTTGGT+AGG + chr3_3:34642528-34642547 Msa0449830:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG + chr3_3:34642529-34642548 Msa0449830:intron 40.0%
!! AAAGGTGAATTTCTAGCCAC+CGG + chr3_3:34642623-34642642 Msa0449830:intron 40.0%
TAGGTCCTTGAGATTATGAG+TGG + chr3_3:34642684-34642703 Msa0449830:intron 40.0%
CCAACTTGACACCTTAATAG+AGG - chr3_3:34642728-34642747 None:intergenic 40.0%
! CCTCTATTAAGGTGTCAAGT+TGG + chr3_3:34642725-34642744 Msa0449830:intron 40.0%
AAATTAGTCCCTGACATTGC+AGG - chr3_3:34642951-34642970 None:intergenic 40.0%
TGCAATGTCAGGGACTAATT+TGG + chr3_3:34642950-34642969 Msa0449830:intron 40.0%
AATGTCAGGGACTAATTTGG+TGG + chr3_3:34642953-34642972 Msa0449830:intron 40.0%
!! GAATCTATCGATTGGTCTAG+AGG + chr3_3:34643023-34643042 Msa0449830:intron 40.0%
! CGAACCTGTGATCTTGTTTA+AGG + chr3_3:34643086-34643105 Msa0449830:intron 40.0%
GACTGCTAGATTCATACAAG+AGG + chr3_3:34643270-34643289 Msa0449830:intron 40.0%
GATAAGTGCTAAAGAGCAAG+TGG + chr3_3:34643500-34643519 Msa0449830:CDS 40.0%
!! CTCTAAAGTGATGTGGTGTA+TGG - chr3_3:34643535-34643554 None:intergenic 40.0%
CATACACCACATCACTTTAG+AGG + chr3_3:34643533-34643552 Msa0449830:CDS 40.0%
AGGTTTATGAAGCCAAGGTT+TGG + chr3_3:34643577-34643596 Msa0449830:CDS 40.0%
GGTTTATGAAGCCAAGGTTT+GGG + chr3_3:34643578-34643597 Msa0449830:CDS 40.0%
ATATTGCCGTATGCAAGCGT+CGG - chr3_3:34642272-34642291 None:intergenic 45.0%
GCAATATCGAGCTAATGCTC+AGG + chr3_3:34642285-34642304 Msa0449830:intron 45.0%
!! GAGCTTAACTCAGTTGGTAG+GGG + chr3_3:34642530-34642549 Msa0449830:intron 45.0%
!! TTAACTCAGTTGGTAGGGGT+AGG + chr3_3:34642534-34642553 Msa0449830:intron 45.0%
!! TAACTCAGTTGGTAGGGGTA+GGG + chr3_3:34642535-34642554 Msa0449830:intron 45.0%
!! AAGGTGAATTTCTAGCCACC+GGG + chr3_3:34642624-34642643 Msa0449830:intron 45.0%
! GTTTTTGTCAAAGAACCCGG+TGG - chr3_3:34642642-34642661 None:intergenic 45.0%
AGTGGTATGTCAAAACGGTC+CGG + chr3_3:34642702-34642721 Msa0449830:intron 45.0%
CTTGACACCTTAATAGAGGC+CGG - chr3_3:34642724-34642743 None:intergenic 45.0%
!! TAAGAGTGTCCTGCAATGTC+AGG + chr3_3:34642939-34642958 Msa0449830:intron 45.0%
!! AAGAGTGTCCTGCAATGTCA+GGG + chr3_3:34642940-34642959 Msa0449830:intron 45.0%
! CCAAGACTTTTCCCAAACCT+TGG - chr3_3:34643592-34643611 None:intergenic 45.0%
CCAAGGTTTGGGAAAAGTCT+TGG + chr3_3:34643589-34643608 Msa0449830:CDS 45.0%
GTCTTGGATGAACTTCAAGG+AGG + chr3_3:34643605-34643624 Msa0449830:CDS 45.0%
ATATTGCCGTATGCAAGCGT+CGG - chr3_3:34642272-34642291 None:intergenic 45.0%
GCAATATCGAGCTAATGCTC+AGG + chr3_3:34642285-34642304 Msa0449830:intron 45.0%
!! GAGCTTAACTCAGTTGGTAG+GGG + chr3_3:34642530-34642549 Msa0449830:intron 45.0%
!! TTAACTCAGTTGGTAGGGGT+AGG + chr3_3:34642534-34642553 Msa0449830:intron 45.0%
!! TAACTCAGTTGGTAGGGGTA+GGG + chr3_3:34642535-34642554 Msa0449830:intron 45.0%
!! AAGGTGAATTTCTAGCCACC+GGG + chr3_3:34642624-34642643 Msa0449830:intron 45.0%
! GTTTTTGTCAAAGAACCCGG+TGG - chr3_3:34642642-34642661 None:intergenic 45.0%
AGTGGTATGTCAAAACGGTC+CGG + chr3_3:34642702-34642721 Msa0449830:intron 45.0%
CTTGACACCTTAATAGAGGC+CGG - chr3_3:34642724-34642743 None:intergenic 45.0%
!! TAAGAGTGTCCTGCAATGTC+AGG + chr3_3:34642939-34642958 Msa0449830:intron 45.0%
!! AAGAGTGTCCTGCAATGTCA+GGG + chr3_3:34642940-34642959 Msa0449830:intron 45.0%
! CCAAGACTTTTCCCAAACCT+TGG - chr3_3:34643592-34643611 None:intergenic 45.0%
CCAAGGTTTGGGAAAAGTCT+TGG + chr3_3:34643589-34643608 Msa0449830:CDS 45.0%
GTCTTGGATGAACTTCAAGG+AGG + chr3_3:34643605-34643624 Msa0449830:CDS 45.0%
!!! TTTAATTTTTTGATTTTTTT+AGG + chr3_3:34642464-34642483 Msa0449830:intron 5.0%
!!! TTAATTTTTTGATTTTTTTA+GGG + chr3_3:34642465-34642484 Msa0449830:intron 5.0%
!!! TTTAATTTTTTGATTTTTTT+AGG + chr3_3:34642464-34642483 Msa0449830:intron 5.0%
!!! TTAATTTTTTGATTTTTTTA+GGG + chr3_3:34642465-34642484 Msa0449830:intron 5.0%
!! GCAAGACTGTTCTGGTTTCC+TGG - chr3_3:34641935-34641954 None:intergenic 50.0%
CATCGATCGCAAGACTGTTC+TGG - chr3_3:34641943-34641962 None:intergenic 50.0%
CAGAACAGTCTTGCGATCGA+TGG + chr3_3:34641941-34641960 Msa0449830:CDS 50.0%
ATAATATATGCAGCGGGCCG+TGG + chr3_3:34642565-34642584 Msa0449830:intron 50.0%
ATCTCAAGGACCTACTTCGG+TGG - chr3_3:34642678-34642697 None:intergenic 50.0%
AAACGGTCCGGCCTCTATTA+AGG + chr3_3:34642714-34642733 Msa0449830:intron 50.0%
GCTAAAGAGCAAGTGGTTGC+TGG + chr3_3:34643507-34643526 Msa0449830:CDS 50.0%
!! GCAAGACTGTTCTGGTTTCC+TGG - chr3_3:34641935-34641954 None:intergenic 50.0%
CATCGATCGCAAGACTGTTC+TGG - chr3_3:34641943-34641962 None:intergenic 50.0%
CAGAACAGTCTTGCGATCGA+TGG + chr3_3:34641941-34641960 Msa0449830:CDS 50.0%
ATAATATATGCAGCGGGCCG+TGG + chr3_3:34642565-34642584 Msa0449830:intron 50.0%
ATCTCAAGGACCTACTTCGG+TGG - chr3_3:34642678-34642697 None:intergenic 50.0%
AAACGGTCCGGCCTCTATTA+AGG + chr3_3:34642714-34642733 Msa0449830:intron 50.0%
GCTAAAGAGCAAGTGGTTGC+TGG + chr3_3:34643507-34643526 Msa0449830:CDS 50.0%
CGTACTCCGACGCTTGCATA+CGG + chr3_3:34642263-34642282 Msa0449830:intron 55.0%
GGCGACTGAGGTTCAAACCA+CGG - chr3_3:34642585-34642604 None:intergenic 55.0%
GTGAATAAGTGGGGCGACTG+AGG - chr3_3:34642597-34642616 None:intergenic 55.0%
CGTACTCCGACGCTTGCATA+CGG + chr3_3:34642263-34642282 Msa0449830:intron 55.0%
GGCGACTGAGGTTCAAACCA+CGG - chr3_3:34642585-34642604 None:intergenic 55.0%
GTGAATAAGTGGGGCGACTG+AGG - chr3_3:34642597-34642616 None:intergenic 55.0%
GGTGGAGTTCGCGATGTTCC+AGG + chr3_3:34641914-34641933 Msa0449830:CDS 60.0%
GGTGGAGTTCGCGATGTTCC+AGG + chr3_3:34641914-34641933 Msa0449830:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 34641902 34643668 34641902 ID=Msa0449830;Name=Msa0449830
chr3_3 mRNA 34641902 34643668 34641902 ID=Msa0449830-mRNA-1;Parent=Msa0449830;Name=Msa0449830-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|2|0|98
chr3_3 exon 34641902 34642003 34641902 ID=Msa0449830-mRNA-1:exon:6174;Parent=Msa0449830-mRNA-1
chr3_3 exon 34643474 34643668 34643474 ID=Msa0449830-mRNA-1:exon:6175;Parent=Msa0449830-mRNA-1
chr3_3 CDS 34641902 34642003 34641902 ID=Msa0449830-mRNA-1:cds;Parent=Msa0449830-mRNA-1
chr3_3 CDS 34643474 34643668 34643474 ID=Msa0449830-mRNA-1:cds;Parent=Msa0449830-mRNA-1
Gene Sequence

>Msa0449830

ATGGCAACGCTTGGTGGAGTTCGCGATGTTCCAGGAAACCAGAACAGTCTTGCGATCGATGGTCTCGCTCGCTTTGCTGTTGAAGAACACAACAAAAAACAGAATGCACTTCTGGAATTTTCAAGGGTGATAAGTGCTAAAGAGCAAGTGGTTGCTGGTACCATACACCACATCACTTTAGAGGTAAAAGATGGAGTGAATAAAAAGGTTTATGAAGCCAAGGTTTGGGAAAAGTCTTGGATGAACTTCAAGGAGGTGCAAGAGTTCAAGCTTGTCGAAGATGCACCTGCGCAGTAA

Protein sequence

>Msa0449830

MATLGGVRDVPGNQNSLAIDGLARFAVEEHNKKQNALLEFSRVISAKEQVVAGTIHHITLEVKDGVNKKVYEAKVWEKSWMNFKEVQEFKLVEDAPAQ*