Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553150 | XP_003607297.1 | 97.059 | 68 | 2 | 0 | 1 | 68 | 1 | 68 | 1.49e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553150 | G7JPM7 | 97.059 | 68 | 2 | 0 | 1 | 68 | 1 | 68 | 7.14e-41 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0553150 | 0.828649 | 7.992717e-55 | -8.615850e-47 |
| Msa0003470 | Msa0553150 | 0.801917 | 7.181164e-49 | -8.615850e-47 |
| Msa0004360 | Msa0553150 | 0.811220 | 7.807324e-51 | -8.615850e-47 |
| Msa0024680 | Msa0553150 | 0.812280 | 4.590909e-51 | -8.615850e-47 |
| Msa0027540 | Msa0553150 | 0.806562 | 7.744312e-50 | -8.615850e-47 |
| Msa0030310 | Msa0553150 | 0.831248 | 1.858487e-55 | -8.615850e-47 |
| Msa0030380 | Msa0553150 | 0.810869 | 9.302322e-51 | -8.615850e-47 |
| Msa0032370 | Msa0553150 | 0.804851 | 1.771055e-49 | -8.615850e-47 |
| Msa0032840 | Msa0553150 | -0.811242 | 7.721640e-51 | -8.615850e-47 |
| Msa0041540 | Msa0553150 | 0.807019 | 6.200721e-50 | -8.615850e-47 |
| Msa0044710 | Msa0553150 | 0.819886 | 9.175034e-53 | -8.615850e-47 |
| Msa0050430 | Msa0553150 | 0.801090 | 1.060902e-48 | -8.615850e-47 |
| Msa0072810 | Msa0553150 | 0.820172 | 7.894759e-53 | -8.615850e-47 |
| Msa0075310 | Msa0553150 | 0.804661 | 1.940608e-49 | -8.615850e-47 |
| Msa0079250 | Msa0553150 | 0.801779 | 7.663617e-49 | -8.615850e-47 |
| Msa0095380 | Msa0553150 | 0.838733 | 2.413387e-57 | -8.615850e-47 |
| Msa0103000 | Msa0553150 | 0.814277 | 1.672150e-51 | -8.615850e-47 |
| Msa0113160 | Msa0553150 | 0.823226 | 1.552553e-53 | -8.615850e-47 |
| Msa0120330 | Msa0553150 | 0.803894 | 2.803844e-49 | -8.615850e-47 |
| Msa0135980 | Msa0553150 | 0.800962 | 1.126681e-48 | -8.615850e-47 |
| Msa0139900 | Msa0553150 | 0.809549 | 1.791013e-50 | -8.615850e-47 |
| Msa0141830 | Msa0553150 | 0.821467 | 3.975421e-53 | -8.615850e-47 |
| Msa0143080 | Msa0553150 | 0.827440 | 1.562705e-54 | -8.615850e-47 |
| Msa0145950 | Msa0553150 | 0.817166 | 3.796168e-52 | -8.615850e-47 |
| Msa0156650 | Msa0553150 | -0.804911 | 1.721230e-49 | -8.615850e-47 |
| Msa0168100 | Msa0553150 | 0.815957 | 7.082340e-52 | -8.615850e-47 |
| Msa0168640 | Msa0553150 | -0.802183 | 6.331566e-49 | -8.615850e-47 |
| Msa0169620 | Msa0553150 | 0.807347 | 5.284417e-50 | -8.615850e-47 |
| Msa0172350 | Msa0553150 | 0.839400 | 1.621262e-57 | -8.615850e-47 |
| Msa0172960 | Msa0553150 | -0.800278 | 1.553143e-48 | -8.615850e-47 |
| Msa0173740 | Msa0553150 | 0.811583 | 6.511923e-51 | -8.615850e-47 |
| Msa0173820 | Msa0553150 | 0.815233 | 1.026906e-51 | -8.615850e-47 |
| Msa0173830 | Msa0553150 | 0.806293 | 8.824552e-50 | -8.615850e-47 |
| Msa0182930 | Msa0553150 | 0.803244 | 3.823374e-49 | -8.615850e-47 |
| Msa0183620 | Msa0553150 | 0.812733 | 3.653828e-51 | -8.615850e-47 |
| Msa0194970 | Msa0553150 | 0.819761 | 9.802733e-53 | -8.615850e-47 |
| Msa0200950 | Msa0553150 | -0.805157 | 1.528361e-49 | -8.615850e-47 |
| Msa0224730 | Msa0553150 | 0.810679 | 1.022473e-50 | -8.615850e-47 |
| Msa0230550 | Msa0553150 | -0.805281 | 1.440097e-49 | -8.615850e-47 |
| Msa0236980 | Msa0553150 | 0.823435 | 1.387471e-53 | -8.615850e-47 |
| Msa0368660 | Msa0553150 | 0.802948 | 4.402211e-49 | -8.615850e-47 |
| Msa0376510 | Msa0553150 | 0.822301 | 2.548731e-53 | -8.615850e-47 |
| Msa0378080 | Msa0553150 | 0.816913 | 4.326540e-52 | -8.615850e-47 |
| Msa0380040 | Msa0553150 | 0.817769 | 2.776864e-52 | -8.615850e-47 |
| Msa0392070 | Msa0553150 | 0.815904 | 7.280270e-52 | -8.615850e-47 |
| Msa0392940 | Msa0553150 | 0.810690 | 1.016790e-50 | -8.615850e-47 |
| Msa0402330 | Msa0553150 | 0.805826 | 1.106680e-49 | -8.615850e-47 |
| Msa0414950 | Msa0553150 | -0.820277 | 7.467854e-53 | -8.615850e-47 |
| Msa0419820 | Msa0553150 | 0.803329 | 3.672057e-49 | -8.615850e-47 |
| Msa0425050 | Msa0553150 | 0.816152 | 6.406223e-52 | -8.615850e-47 |
| Msa0429290 | Msa0553150 | 0.825240 | 5.222348e-54 | -8.615850e-47 |
| Msa0436460 | Msa0553150 | 0.827862 | 1.237300e-54 | -8.615850e-47 |
| Msa0441800 | Msa0553150 | 0.809933 | 1.480864e-50 | -8.615850e-47 |
| Msa0468160 | Msa0553150 | 0.815081 | 1.109589e-51 | -8.615850e-47 |
| Msa0469910 | Msa0553150 | -0.819734 | 9.942019e-53 | -8.615850e-47 |
| Msa0469970 | Msa0553150 | 0.806581 | 7.673976e-50 | -8.615850e-47 |
| Msa0475580 | Msa0553150 | 0.814578 | 1.434619e-51 | -8.615850e-47 |
| Msa0480320 | Msa0553150 | 0.829310 | 5.528134e-55 | -8.615850e-47 |
| Msa0242680 | Msa0553150 | 0.825806 | 3.835267e-54 | -8.615850e-47 |
| Msa0244270 | Msa0553150 | 0.841093 | 5.854865e-58 | -8.615850e-47 |
| Msa0246690 | Msa0553150 | 0.821050 | 4.962032e-53 | -8.615850e-47 |
| Msa0257310 | Msa0553150 | 0.809348 | 1.977770e-50 | -8.615850e-47 |
| Msa0267760 | Msa0553150 | 0.840861 | 6.738211e-58 | -8.615850e-47 |
| Msa0280490 | Msa0553150 | 0.814607 | 1.413296e-51 | -8.615850e-47 |
| Msa0280900 | Msa0553150 | 0.837398 | 5.321667e-57 | -8.615850e-47 |
| Msa0302650 | Msa0553150 | 0.801440 | 8.994640e-49 | -8.615850e-47 |
| Msa0319200 | Msa0553150 | 0.811338 | 7.361313e-51 | -8.615850e-47 |
| Msa0320100 | Msa0553150 | 0.806488 | 8.026848e-50 | -8.615850e-47 |
| Msa0328210 | Msa0553150 | 0.838245 | 3.224255e-57 | -8.615850e-47 |
| Msa0344640 | Msa0553150 | 0.816862 | 4.443550e-52 | -8.615850e-47 |
| Msa0355270 | Msa0553150 | 0.800809 | 1.210867e-48 | -8.615850e-47 |
| Msa0358170 | Msa0553150 | 0.805613 | 1.226478e-49 | -8.615850e-47 |
| Msa0484690 | Msa0553150 | 0.830957 | 2.190966e-55 | -8.615850e-47 |
| Msa0487910 | Msa0553150 | 0.803771 | 2.973810e-49 | -8.615850e-47 |
| Msa0490300 | Msa0553150 | 0.812662 | 3.787506e-51 | -8.615850e-47 |
| Msa0508200 | Msa0553150 | 0.800548 | 1.368901e-48 | -8.615850e-47 |
| Msa0508590 | Msa0553150 | 0.802883 | 4.541349e-49 | -8.615850e-47 |
| Msa0517840 | Msa0553150 | 0.826465 | 2.673208e-54 | -8.615850e-47 |
| Msa0518040 | Msa0553150 | 0.809693 | 1.667987e-50 | -8.615850e-47 |
| Msa0519220 | Msa0553150 | 0.826086 | 3.290154e-54 | -8.615850e-47 |
| Msa0520320 | Msa0553150 | 0.806200 | 9.232405e-50 | -8.615850e-47 |
| Msa0526700 | Msa0553150 | 0.812720 | 3.678606e-51 | -8.615850e-47 |
| Msa0526710 | Msa0553150 | 0.836681 | 8.113483e-57 | -8.615850e-47 |
| Msa0527590 | Msa0553150 | 0.821388 | 4.145972e-53 | -8.615850e-47 |
| Msa0527600 | Msa0553150 | 0.808508 | 2.992577e-50 | -8.615850e-47 |
| Msa0532840 | Msa0553150 | 0.806124 | 9.580966e-50 | -8.615850e-47 |
| Msa0533010 | Msa0553150 | 0.814002 | 1.923467e-51 | -8.615850e-47 |
| Msa0535030 | Msa0553150 | 0.828210 | 1.020479e-54 | -8.615850e-47 |
| Msa0535060 | Msa0553150 | 0.829299 | 5.563450e-55 | -8.615850e-47 |
| Msa0546380 | Msa0553150 | 0.814702 | 1.346453e-51 | -8.615850e-47 |
| Msa0546740 | Msa0553150 | 0.812990 | 3.210801e-51 | -8.615850e-47 |
| Msa0546840 | Msa0553150 | 0.815687 | 8.136533e-52 | -8.615850e-47 |
| Msa0553150 | Msa0564930 | 0.806259 | 8.970580e-50 | -8.615850e-47 |
| Msa0553150 | Msa0590680 | 0.826397 | 2.773822e-54 | -8.615850e-47 |
| Msa0553150 | Msa0591060 | 0.840978 | 6.277651e-58 | -8.615850e-47 |
| Msa0553150 | Msa0591770 | 0.828845 | 7.167884e-55 | -8.615850e-47 |
| Msa0553150 | Msa0607200 | 0.834443 | 2.987838e-56 | -8.615850e-47 |
| Msa0553150 | Msa0618010 | 0.850621 | 1.508355e-60 | -8.615850e-47 |
| Msa0553150 | Msa0621120 | 0.807984 | 3.870270e-50 | -8.615850e-47 |
| Msa0553150 | Msa0627910 | 0.810005 | 1.429071e-50 | -8.615850e-47 |
| Msa0553150 | Msa0642650 | 0.840289 | 9.513590e-58 | -8.615850e-47 |
| Msa0553150 | Msa0647380 | 0.865074 | 7.683466e-65 | -8.615850e-47 |
| Msa0553150 | Msa0669220 | 0.811334 | 7.373694e-51 | -8.615850e-47 |
| Msa0553150 | Msa0669850 | 0.841452 | 4.712960e-58 | -8.615850e-47 |
| Msa0553150 | Msa0677270 | 0.803942 | 2.739776e-49 | -8.615850e-47 |
| Msa0553150 | Msa0677290 | 0.805466 | 1.317061e-49 | -8.615850e-47 |
| Msa0553150 | Msa0678860 | 0.800752 | 1.243725e-48 | -8.615850e-47 |
| Msa0553150 | Msa0681890 | 0.817908 | 2.582788e-52 | -8.615850e-47 |
| Msa0553150 | Msa0690250 | 0.869420 | 3.137159e-66 | -8.615850e-47 |
| Msa0553150 | Msa0712310 | 0.802723 | 4.899299e-49 | -8.615850e-47 |
| Msa0553150 | Msa0730180 | 0.804121 | 2.515284e-49 | -8.615850e-47 |
| Msa0553150 | Msa0734660 | 0.829101 | 6.213899e-55 | -8.615850e-47 |
| Msa0553150 | Msa0755340 | 0.811392 | 7.162087e-51 | -8.615850e-47 |
| Msa0553150 | Msa0776220 | 0.860739 | 1.673870e-63 | -8.615850e-47 |
| Msa0553150 | Msa0787750 | 0.807286 | 5.442840e-50 | -8.615850e-47 |
| Msa0553150 | Msa0795030 | 0.805995 | 1.019735e-49 | -8.615850e-47 |
| Msa0553150 | Msa0804120 | 0.818779 | 1.640314e-52 | -8.615850e-47 |
| Msa0553150 | Msa0813670 | 0.805000 | 1.649124e-49 | -8.615850e-47 |
| Msa0553150 | Msa0813720 | 0.822375 | 2.449410e-53 | -8.615850e-47 |
| Msa0553150 | Msa0830990 | 0.801991 | 6.933368e-49 | -8.615850e-47 |
| Msa0553150 | Msa0831580 | 0.805934 | 1.050442e-49 | -8.615850e-47 |
| Msa0553150 | Msa0846030 | 0.803643 | 3.161314e-49 | -8.615850e-47 |
| Msa0553150 | Msa0852730 | 0.841423 | 4.796038e-58 | -8.615850e-47 |
| Msa0553150 | Msa0854120 | 0.833176 | 6.198540e-56 | -8.615850e-47 |
| Msa0553150 | Msa0859560 | 0.807502 | 4.898933e-50 | -8.615850e-47 |
| Msa0553150 | Msa0871890 | 0.810985 | 8.780079e-51 | -8.615850e-47 |
| Msa0553150 | Msa0874500 | 0.825616 | 4.252652e-54 | -8.615850e-47 |
| Msa0553150 | Msa0874570 | 0.800296 | 1.540583e-48 | -8.615850e-47 |
| Msa0553150 | Msa0890250 | 0.812729 | 3.661527e-51 | -8.615850e-47 |
| Msa0553150 | Msa0900630 | 0.827691 | 1.360202e-54 | -8.615850e-47 |
| Msa0553150 | Msa0903330 | 0.820493 | 6.661731e-53 | -8.615850e-47 |
| Msa0553150 | Msa0905550 | 0.802016 | 6.850993e-49 | -8.615850e-47 |
| Msa0553150 | Msa0907700 | 0.806325 | 8.689711e-50 | -8.615850e-47 |
| Msa0553150 | Msa0922540 | 0.826659 | 2.403359e-54 | -8.615850e-47 |
| Msa0553150 | Msa0925160 | 0.812576 | 3.955834e-51 | -8.615850e-47 |
| Msa0553150 | Msa0942730 | 0.801080 | 1.065950e-48 | -8.615850e-47 |
| Msa0553150 | Msa0946320 | 0.800672 | 1.291203e-48 | -8.615850e-47 |
| Msa0553150 | Msa0955260 | 0.805732 | 1.158002e-49 | -8.615850e-47 |
| Msa0553150 | Msa0958020 | 0.808651 | 2.789601e-50 | -8.615850e-47 |
| Msa0553150 | Msa1002040 | 0.812224 | 4.721273e-51 | -8.615850e-47 |
| Msa0553150 | Msa1004500 | 0.804261 | 2.351820e-49 | -8.615850e-47 |
| Msa0553150 | Msa1015060 | 0.814438 | 1.540782e-51 | -8.615850e-47 |
| Msa0553150 | Msa1018790 | 0.826415 | 2.747451e-54 | -8.615850e-47 |
| Msa0553150 | Msa1044340 | 0.811604 | 6.441953e-51 | -8.615850e-47 |
| Msa0553150 | Msa1045880 | 0.801295 | 9.631775e-49 | -8.615850e-47 |
| Msa0553150 | Msa1045970 | 0.803201 | 3.902650e-49 | -8.615850e-47 |
| Msa0553150 | Msa1046870 | 0.804457 | 2.141005e-49 | -8.615850e-47 |
| Msa0553150 | Msa1048330 | 0.830972 | 2.173124e-55 | -8.615850e-47 |
| Msa0553150 | Msa1069660 | -0.809668 | 1.689154e-50 | -8.615850e-47 |
| Msa0553150 | Msa1082700 | 0.800950 | 1.133283e-48 | -8.615850e-47 |
| Msa0553150 | Msa1109570 | 0.812140 | 4.923361e-51 | -8.615850e-47 |
| Msa0553150 | Msa1126120 | -0.801100 | 1.055937e-48 | -8.615850e-47 |
| Msa0553150 | Msa1135690 | 0.805965 | 1.034599e-49 | -8.615850e-47 |
| Msa0553150 | Msa1166010 | 0.806460 | 8.137391e-50 | -8.615850e-47 |
| Msa0553150 | Msa1171690 | 0.806136 | 9.524457e-50 | -8.615850e-47 |
| Msa0553150 | Msa1174010 | 0.819036 | 1.434110e-52 | -8.615850e-47 |
| Msa0553150 | Msa1224670 | 0.827355 | 1.637828e-54 | -8.615850e-47 |
| Msa0553150 | Msa1237030 | 0.829910 | 3.950726e-55 | -8.615850e-47 |
| Msa0553150 | Msa1249870 | 0.829561 | 4.806088e-55 | -8.615850e-47 |
| Msa0553150 | Msa1284520 | 0.821370 | 4.185695e-53 | -8.615850e-47 |
| Msa0553150 | Msa1324000 | 0.810317 | 1.224007e-50 | -8.615850e-47 |
| Msa0553150 | Msa1335940 | 0.806052 | 9.921303e-50 | -8.615850e-47 |
| Msa0553150 | Msa1337090 | 0.802003 | 6.893734e-49 | -8.615850e-47 |
| Msa0553150 | Msa1362510 | 0.810432 | 1.156375e-50 | -8.615850e-47 |
| Msa0553150 | Msa1365150 | 0.801976 | 6.981575e-49 | -8.615850e-47 |
| Msa0553150 | Msa1373510 | 0.827607 | 1.424903e-54 | -8.615850e-47 |
| Msa0553150 | Msa1374440 | 0.828111 | 1.078012e-54 | -8.615850e-47 |
| Msa0553150 | Msa1379570 | 0.800268 | 1.560481e-48 | -8.615850e-47 |
| Msa0553150 | Msa1379990 | 0.828221 | 1.014291e-54 | -8.615850e-47 |
| Msa0553150 | Msa1382310 | 0.839617 | 1.423633e-57 | -8.615850e-47 |
| Msa0553150 | Msa1382410 | 0.811789 | 5.873140e-51 | -8.615850e-47 |
| Msa0553150 | Msa1390310 | 0.840443 | 8.668762e-58 | -8.615850e-47 |
| Msa0553150 | Msa1397050 | 0.826537 | 2.569136e-54 | -8.615850e-47 |
| Msa0553150 | Msa1406040 | 0.811030 | 8.584948e-51 | -8.615850e-47 |
| Msa0553150 | Msa1422270 | 0.834250 | 3.341146e-56 | -8.615850e-47 |
| Msa0553150 | Msa1427830 | 0.808401 | 3.153979e-50 | -8.615850e-47 |
| Msa0553150 | Msa1432640 | 0.802390 | 5.738429e-49 | -8.615850e-47 |
| Msa0553150 | Msa1438640 | 0.806026 | 1.004493e-49 | -8.615850e-47 |
| Msa0553150 | Msa1449880 | 0.831387 | 1.717989e-55 | -8.615850e-47 |
| Msa0553150 | Msa1453620 | 0.822877 | 1.872750e-53 | -8.615850e-47 |
| Msa0553150 | Msa1454110 | 0.820480 | 6.709559e-53 | -8.615850e-47 |
| Msa0553150 | Msa1456650 | 0.825136 | 5.526310e-54 | -8.615850e-47 |
| Msa0553150 | Msa1460470 | 0.802086 | 6.630216e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553150 | MtrunA17_Chr4g0038821 | 97.059 | 68 | 2 | 0 | 1 | 68 | 1 | 68 | 1.37e-44 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553150 | AT3G22210.1 | 62.500 | 64 | 23 | 1 | 5 | 68 | 6 | 68 | 1.55e-20 | 77.0 |
Find 19 sgRNAs with CRISPR-Local
Find 26 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAACATGCAACTATTT+TGG | 0.213384 | 4_1:-50058049 | None:intergenic |
| GCAATTCGCTCTTCCAGTTT+TGG | 0.231911 | 4_1:+50057488 | Msa0553150:CDS |
| CGATGGAGAAAAGTCATTTA+AGG | 0.322010 | 4_1:-50058083 | None:intergenic |
| GTCTTCTAGCTCGCCTCTCT+CGG | 0.346161 | 4_1:-50057718 | None:intergenic |
| GACAGAAATCACTTCAAGAT+TGG | 0.349085 | 4_1:+50057648 | Msa0553150:intron |
| GCTGCAACAATGCCCAAAAC+TGG | 0.365881 | 4_1:-50057501 | None:intergenic |
| AGCTCGCCTCTCTCGGGAGC+TGG | 0.377870 | 4_1:-50057711 | None:intergenic |
| GAGAGATATATCATCAGAAA+TGG | 0.429163 | 4_1:+50057458 | Msa0553150:exon |
| AGTAGCAAATTGTTTGTACT+AGG | 0.459932 | 4_1:+50057853 | Msa0553150:three_prime_UTR |
| ACAGAAATCACTTCAAGATT+GGG | 0.482353 | 4_1:+50057649 | Msa0553150:intron |
| ATTGAAACTCACTGCATAGA+AGG | 0.485260 | 4_1:-50057535 | None:intergenic |
| TCTTCTAGCTCGCCTCTCTC+GGG | 0.500761 | 4_1:-50057717 | None:intergenic |
| ACCAACAAGAACTATTGAAA+AGG | 0.500770 | 4_1:-50057884 | None:intergenic |
| CTCTCTCGGGAGCTGGACGT+TGG | 0.528180 | 4_1:-50057704 | None:intergenic |
| GATGATTCTGAATCAGAGAA+TGG | 0.538128 | 4_1:+50057671 | Msa0553150:CDS |
| CAACGTCCAGCTCCCGAGAG+AGG | 0.600475 | 4_1:+50057705 | Msa0553150:CDS |
| GAGTTTCAATGAGATTAGAG+AGG | 0.641117 | 4_1:+50057548 | Msa0553150:CDS |
| GATTCTGAATCAGAGAATGG+AGG | 0.645594 | 4_1:+50057674 | Msa0553150:CDS |
| GTGAGACTAGTCACTGACCC+AGG | 0.670217 | 4_1:-50058005 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTTTTCTAATAGAAAA+TGG | - | chr4_1:50057933-50057952 | None:intergenic | 15.0% |
| !!! | ATTTCTTTATTTTTGATGCT+TGG | + | chr4_1:50057813-50057832 | Msa0553150:three_prime_UTR | 20.0% |
| !!! | TTGCTGTTGAAGTTATTTTT+TGG | - | chr4_1:50057759-50057778 | None:intergenic | 25.0% |
| !! | AAATGAACATGCAACTATTT+TGG | - | chr4_1:50058052-50058071 | None:intergenic | 25.0% |
| GAGAGATATATCATCAGAAA+TGG | + | chr4_1:50057458-50057477 | Msa0553150:exon | 30.0% | |
| ACAGAAATCACTTCAAGATT+GGG | + | chr4_1:50057649-50057668 | Msa0553150:intron | 30.0% | |
| AGTAGCAAATTGTTTGTACT+AGG | + | chr4_1:50057853-50057872 | Msa0553150:three_prime_UTR | 30.0% | |
| ! | ACCTTTTCAATAGTTCTTGT+TGG | + | chr4_1:50057883-50057902 | Msa0553150:three_prime_UTR | 30.0% |
| ACCAACAAGAACTATTGAAA+AGG | - | chr4_1:50057887-50057906 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTGTGTTTTCTCC+TGG | + | chr4_1:50057987-50058006 | Msa0553150:three_prime_UTR | 30.0% |
| !!! | CATTTTTTGTGTTTTCTCCT+GGG | + | chr4_1:50057988-50058007 | Msa0553150:three_prime_UTR | 30.0% |
| ATTGAAACTCACTGCATAGA+AGG | - | chr4_1:50057538-50057557 | None:intergenic | 35.0% | |
| GAGTTTCAATGAGATTAGAG+AGG | + | chr4_1:50057548-50057567 | Msa0553150:CDS | 35.0% | |
| GACAGAAATCACTTCAAGAT+TGG | + | chr4_1:50057648-50057667 | Msa0553150:intron | 35.0% | |
| GATGATTCTGAATCAGAGAA+TGG | + | chr4_1:50057671-50057690 | Msa0553150:CDS | 35.0% | |
| ! | CAATTCGCTCTTCCAGTTTT+GGG | + | chr4_1:50057489-50057508 | Msa0553150:CDS | 40.0% |
| GATTCTGAATCAGAGAATGG+AGG | + | chr4_1:50057674-50057693 | Msa0553150:CDS | 40.0% | |
| !!! | CATGCAACTATTTTGGTCTC+TGG | - | chr4_1:50058045-50058064 | None:intergenic | 40.0% |
| ! | GCAATTCGCTCTTCCAGTTT+TGG | + | chr4_1:50057488-50057507 | Msa0553150:CDS | 45.0% |
| GCTGCAACAATGCCCAAAAC+TGG | - | chr4_1:50057504-50057523 | None:intergenic | 50.0% | |
| !! | TCTTCTAGCTCGCCTCTCTC+GGG | - | chr4_1:50057720-50057739 | None:intergenic | 55.0% |
| !! | GTCTTCTAGCTCGCCTCTCT+CGG | - | chr4_1:50057721-50057740 | None:intergenic | 55.0% |
| ! | GTGAGACTAGTCACTGACCC+AGG | - | chr4_1:50058008-50058027 | None:intergenic | 55.0% |
| CTCTCTCGGGAGCTGGACGT+TGG | - | chr4_1:50057707-50057726 | None:intergenic | 65.0% | |
| CAACGTCCAGCTCCCGAGAG+AGG | + | chr4_1:50057705-50057724 | Msa0553150:CDS | 65.0% | |
| AGCTCGCCTCTCTCGGGAGC+TGG | - | chr4_1:50057714-50057733 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 50057428 | 50058099 | 50057428 | ID=Msa0553150;Name=Msa0553150 |
| chr4_1 | mRNA | 50057428 | 50058099 | 50057428 | ID=Msa0553150-mRNA-1;Parent=Msa0553150;Name=Msa0553150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=49|1|1|1|1|1|2|333|68 |
| chr4_1 | exon | 50057428 | 50057569 | 50057428 | ID=Msa0553150-mRNA-1:exon:14110;Parent=Msa0553150-mRNA-1 |
| chr4_1 | exon | 50057653 | 50058099 | 50057653 | ID=Msa0553150-mRNA-1:exon:14111;Parent=Msa0553150-mRNA-1 |
| chr4_1 | five_prime_UTR | 50057428 | 50057476 | 50057428 | ID=Msa0553150-mRNA-1:five_prime_utr;Parent=Msa0553150-mRNA-1 |
| chr4_1 | CDS | 50057477 | 50057569 | 50057477 | ID=Msa0553150-mRNA-1:cds;Parent=Msa0553150-mRNA-1 |
| chr4_1 | CDS | 50057653 | 50057766 | 50057653 | ID=Msa0553150-mRNA-1:cds;Parent=Msa0553150-mRNA-1 |
| chr4_1 | three_prime_UTR | 50057767 | 50058099 | 50057767 | ID=Msa0553150-mRNA-1:three_prime_utr;Parent=Msa0553150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
