AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211300 MtrunA17_Chr4g0059991 94.196 603 33 2 1 603 1 601 0.0 1167
Msa1211300 MtrunA17_Chr4g0059971 67.759 580 178 3 3 575 7 584 0.0 842
Msa1211300 MtrunA17_Chr4g0059981 65.296 608 190 4 9 603 5 604 0.0 817
Msa1211300 MtrunA17_Chr5g0415791 46.978 579 291 6 28 597 34 605 0.0 550
Msa1211300 MtrunA17_Chr4g0060001 41.579 570 318 6 12 578 18 575 1.43e-156 462
Msa1211300 MtrunA17_Chr8g0362801 44.807 491 252 8 111 594 1 479 1.12e-148 437
Msa1211300 MtrunA17_Chr8g0362781 37.973 582 339 8 7 575 9 581 4.40e-146 435
Msa1211300 MtrunA17_Chr7g0240271 39.130 575 335 7 1 570 1 565 1.41e-141 423
Msa1211300 MtrunA17_Chr8g0390331 39.833 600 336 12 5 600 2 580 5.86e-140 419
Msa1211300 MtrunA17_Chr5g0422881 37.177 581 337 8 3 575 4 564 4.75e-135 406
Msa1211300 MtrunA17_Chr7g0240281 37.479 595 351 9 1 583 1 586 5.36e-134 404
Msa1211300 MtrunA17_Chr7g0255621 37.778 585 342 11 18 595 15 584 4.42e-131 397
Msa1211300 MtrunA17_Chr8g0375311 36.833 562 339 7 17 575 34 582 1.02e-128 390
Msa1211300 MtrunA17_Chr3g0104011 37.409 548 330 5 29 575 28 563 9.26e-128 387
Msa1211300 MtrunA17_Chr4g0005901 36.915 577 347 8 1 575 10 571 1.11e-127 387
Msa1211300 MtrunA17_Chr7g0255601 36.088 593 361 10 7 593 10 590 2.89e-127 387
Msa1211300 MtrunA17_Chr8g0375351 35.602 573 347 10 4 573 27 580 4.12e-126 383
Msa1211300 MtrunA17_Chr2g0331511 36.441 590 347 9 17 601 12 578 1.65e-125 383
Msa1211300 MtrunA17_Chr7g0241741 36.918 558 335 7 18 575 21 561 4.47e-125 380
Msa1211300 MtrunA17_Chr8g0375341 34.940 581 354 9 3 575 18 582 2.35e-124 379
Msa1211300 MtrunA17_Chr8g0375321 35.556 585 347 10 2 575 14 579 2.52e-124 379
Msa1211300 MtrunA17_Chr1g0147631 37.217 575 333 10 8 568 1 561 5.11e-124 378
Msa1211300 MtrunA17_Chr4g0003761 34.343 594 375 9 6 597 14 594 7.71e-124 378
Msa1211300 MtrunA17_Chr2g0331521 36.870 575 341 11 8 572 1 563 1.93e-123 377
Msa1211300 MtrunA17_Chr7g0255611 34.609 601 374 10 1 596 9 595 7.84e-123 375
Msa1211300 MtrunA17_Chr8g0375361 37.112 547 334 6 29 575 45 581 1.18e-120 369
Msa1211300 MtrunA17_Chr3g0142101 34.812 586 354 10 10 594 25 583 5.30e-118 362
Msa1211300 MtrunA17_Chr8g0375291 35.663 558 339 6 17 569 34 576 1.19e-117 362
Msa1211300 MtrunA17_Chr3g0142091 34.642 586 362 5 7 592 10 574 1.58e-117 361
Msa1211300 MtrunA17_Chr5g0415841 38.462 468 276 5 111 575 1 459 3.79e-117 356
Msa1211300 MtrunA17_Chr8g0375331 36.237 574 332 12 15 575 14 566 4.67e-117 359
Msa1211300 MtrunA17_Chr2g0331461 34.488 606 375 9 7 601 9 603 2.69e-115 357
Msa1211300 MtrunA17_Chr2g0331481 33.224 611 377 9 7 602 9 603 2.73e-113 352
Msa1211300 MtrunA17_Chr7g0240181 39.019 469 270 7 114 578 4 460 3.75e-112 344
Msa1211300 MtrunA17_Chr7g0240211 39.262 461 264 7 122 578 12 460 6.08e-112 343
Msa1211300 MtrunA17_Chr7g0235521 39.019 469 270 7 114 578 4 460 8.76e-112 343
Msa1211300 MtrunA17_Chr2g0331471 33.495 618 373 11 9 602 63 666 6.38e-111 348
Msa1211300 MtrunA17_Chr7g0261811 33.670 594 367 10 15 601 19 592 1.27e-110 344
Msa1211300 MtrunA17_Chr7g0240131 38.806 469 271 7 114 578 4 460 1.57e-110 340
Msa1211300 MtrunA17_Chr1g0157601 33.157 567 363 10 8 572 1 553 2.15e-109 340
Msa1211300 MtrunA17_Chr5g0399071 31.525 590 384 8 12 596 14 588 2.00e-108 338
Msa1211300 MtrunA17_Chr5g0400371 32.702 581 372 8 3 573 85 656 1.69e-107 338
Msa1211300 MtrunA17_Chr5g0399061 33.755 554 348 8 28 575 32 572 5.38e-107 334
Msa1211300 MtrunA17_Chr1g0157611 33.562 584 368 10 8 588 1 567 5.54e-106 331
Msa1211300 MtrunA17_Chr7g0214461 31.111 585 386 6 8 592 63 630 2.47e-105 331
Msa1211300 MtrunA17_Chr4g0008651 35.337 549 336 9 28 575 39 569 4.27e-105 329
Msa1211300 MtrunA17_Chr3g0112611 34.691 614 367 14 1 600 1 594 4.98e-105 329
Msa1211300 MtrunA17_Chr1g0177591 32.812 576 347 10 5 572 21 564 1.16e-104 327
Msa1211300 MtrunA17_Chr4g0054891 32.737 559 356 5 29 579 116 662 3.44e-103 327
Msa1211300 MtrunA17_Chr3g0114501 34.806 566 348 10 29 590 28 576 5.38e-103 323
Msa1211300 MtrunA17_Chr7g0261771 33.218 578 362 10 29 601 37 595 1.31e-102 323
Msa1211300 MtrunA17_Chr3g0112671 33.002 603 365 13 2 593 4 578 2.16e-102 322
Msa1211300 MtrunA17_Chr4g0056431 35.563 568 351 9 28 591 30 586 4.53e-102 321
Msa1211300 MtrunA17_Chr7g0261881 31.605 598 377 9 15 603 19 593 3.45e-101 319
Msa1211300 MtrunA17_Chr3g0077151 34.276 566 321 9 17 575 22 543 4.50e-101 317
Msa1211300 MtrunA17_Chr7g0240381 33.851 579 350 11 3 575 7 558 6.47e-101 318
Msa1211300 MtrunA17_Chr7g0240151 37.149 463 259 7 114 572 4 438 9.37e-101 314
Msa1211300 MtrunA17_Chr1g0157621 33.026 542 348 9 44 583 1 529 6.89e-100 315
Msa1211300 MtrunA17_Chr7g0218851 31.271 582 382 6 12 591 35 600 3.18e-99 314
Msa1211300 MtrunA17_Chr7g0217461 32.686 566 373 6 29 592 30 589 1.04e-98 312
Msa1211300 MtrunA17_Chr2g0326211 34.948 578 337 11 5 575 2 547 3.31e-98 310
Msa1211300 MtrunA17_Chr1g0166791 32.088 589 378 9 16 601 17 586 6.87e-97 308
Msa1211300 MtrunA17_Chr4g0014841 34.043 564 322 11 25 574 21 548 1.27e-96 306
Msa1211300 MtrunA17_Chr8g0353031 32.446 601 347 10 8 586 1 564 1.67e-96 306
Msa1211300 MtrunA17_Chr5g0439381 33.625 571 343 8 28 592 33 573 2.40e-96 306
Msa1211300 MtrunA17_Chr1g0213711 31.271 582 373 8 17 595 15 572 1.91e-95 304
Msa1211300 MtrunA17_Chr1g0187241 31.349 571 375 7 15 582 18 574 3.23e-95 303
Msa1211300 MtrunA17_Chr2g0325951 33.333 579 345 13 5 575 2 547 1.90e-94 300
Msa1211300 MtrunA17_Chr4g0063591 34.358 553 338 11 28 575 27 559 3.39e-94 300
Msa1211300 MtrunA17_Chr7g0261851 31.177 603 390 9 4 601 9 591 1.90e-93 299
Msa1211300 MtrunA17_Chr4g0014791 33.862 567 319 11 25 574 21 548 5.53e-93 296
Msa1211300 MtrunA17_Chr4g0014871 32.731 553 331 10 29 575 36 553 6.21e-93 296
Msa1211300 MtrunA17_Chr4g0014781 33.566 572 334 11 17 581 23 555 4.61e-92 294
Msa1211300 MtrunA17_Chr2g0325961 33.449 574 352 10 5 575 2 548 6.04e-92 293
Msa1211300 MtrunA17_Chr7g0214731 32.264 561 353 7 28 575 66 612 2.29e-91 295
Msa1211300 MtrunA17_Chr7g0261791 30.068 592 390 8 15 601 21 593 3.84e-91 293
Msa1211300 MtrunA17_Chr4g0014801 33.750 560 325 11 29 581 35 555 4.75e-91 291
Msa1211300 MtrunA17_Chr1g0193391 32.021 559 349 11 28 582 22 553 8.50e-90 290
Msa1211300 MtrunA17_Chr3g0082631 36.891 431 261 5 155 580 40 464 6.03e-88 281
Msa1211300 MtrunA17_Chr2g0276751 30.590 559 347 9 24 575 39 563 1.56e-87 283
Msa1211300 MtrunA17_Chr1g0166741 32.448 527 331 8 28 551 32 536 1.73e-87 283
Msa1211300 MtrunA17_Chr7g0271221 31.552 580 361 13 11 582 2 553 2.92e-87 282
Msa1211300 MtrunA17_Chr3g0133341 32.000 575 354 15 28 592 19 566 4.57e-86 279
Msa1211300 MtrunA17_Chr1g0166711 31.315 578 380 7 16 591 18 580 1.64e-85 278
Msa1211300 MtrunA17_Chr4g0011471 30.370 540 359 8 38 573 31 557 2.09e-85 277
Msa1211300 MtrunA17_Chr1g0177611 33.333 459 273 8 119 572 5 435 6.71e-85 272
Msa1211300 MtrunA17_Chr2g0284701 30.313 607 395 11 3 595 10 602 4.98e-84 274
Msa1211300 MtrunA17_Chr1g0166771 31.731 520 330 8 41 557 9 506 3.67e-83 270
Msa1211300 MtrunA17_Chr7g0261661 31.429 490 316 8 111 597 1 473 1.28e-80 262
Msa1211300 MtrunA17_Chr1g0177631 32.462 459 277 8 119 572 5 435 4.26e-79 257
Msa1211300 MtrunA17_Chr4g0069581 31.204 548 343 12 42 583 5 524 1.48e-78 259
Msa1211300 MtrunA17_Chr5g0415961 29.352 586 364 10 17 579 18 576 1.09e-76 254
Msa1211300 MtrunA17_Chr8g0362711 31.095 566 379 8 17 579 18 575 1.76e-76 254
Msa1211300 MtrunA17_Chr4g0014861 32.886 447 272 8 133 574 4 427 3.57e-76 249
Msa1211300 MtrunA17_Chr8g0379971 28.788 594 372 10 17 575 14 591 3.79e-72 243
Msa1211300 MtrunA17_Chr4g0011041 27.441 594 395 12 2 576 4 580 1.93e-71 240
Msa1211300 MtrunA17_Chr1g0166731 32.766 470 299 6 110 577 9 463 3.60e-71 237
Msa1211300 MtrunA17_Chr7g0261751 29.175 473 288 6 15 450 23 485 1.74e-63 218
Msa1211300 MtrunA17_Chr6g0451841 29.550 555 336 13 42 579 24 540 2.70e-63 218
Msa1211300 MtrunA17_Chr8g0379991 27.622 572 366 11 44 575 1 564 5.23e-62 215
Msa1211300 MtrunA17_Chr3g0112631 37.542 301 160 9 298 582 3 291 5.04e-60 202
Msa1211300 MtrunA17_Chr3g0142121 35.135 296 171 7 299 594 11 285 1.90e-53 184
Msa1211300 MtrunA17_Chr3g0142111 33.648 318 203 3 1 313 19 333 3.07e-53 185
Msa1211300 MtrunA17_Chr7g0261731 31.098 328 212 4 29 353 37 353 8.72e-53 184
Msa1211300 MtrunA17_Chr1g0147591 42.365 203 103 7 150 347 7 200 1.54e-44 157
Msa1211300 MtrunA17_Chr4g0060071 31.438 299 178 5 287 579 25 302 4.24e-41 151
Msa1211300 MtrunA17_Chr7g0234181 26.374 455 288 9 118 572 6 413 2.38e-36 140
Msa1211300 MtrunA17_Chr7g0234381 26.350 463 294 10 110 572 3 418 1.59e-35 138
Msa1211300 MtrunA17_Chr7g0261721 33.772 228 144 4 375 601 4 225 2.06e-35 133
Msa1211300 MtrunA17_Chr7g0234151 25.486 463 298 9 110 572 3 418 1.51e-33 132
Msa1211300 MtrunA17_Chr2g0326221 31.760 233 126 5 343 575 24 223 8.32e-31 120
Msa1211300 MtrunA17_Chr3g0112651 31.847 157 103 2 110 266 21 173 1.04e-22 96.7
Msa1211300 MtrunA17_Chr8g0362791 50.602 83 41 0 27 109 40 122 8.40e-22 92.0
Msa1211300 MtrunA17_Chr8g0382591 38.655 119 69 4 298 414 3 119 4.42e-19 84.0
Msa1211300 MtrunA17_Chr7g0261831 33.129 163 91 4 252 410 1 149 1.50e-17 82.0
Msa1211300 MtrunA17_Chr7g0240221 33.636 110 72 1 1 109 4 113 6.29e-16 74.3
Msa1211300 MtrunA17_Chr7g0240191 33.636 110 72 1 1 109 4 113 6.29e-16 74.3
Msa1211300 MtrunA17_Chr7g0240161 33.636 110 72 1 1 109 4 113 6.29e-16 74.3
Msa1211300 MtrunA17_Chr7g0240141 33.636 110 72 1 1 109 4 113 7.64e-16 74.3
Msa1211300 MtrunA17_Chr4g0060061 32.308 130 86 2 129 257 2 130 7.86e-16 74.7
Msa1211300 MtrunA17_Chr1g0147581 35.200 125 71 3 426 549 1 116 1.27e-15 73.6
Msa1211300 MtrunA17_Chr7g0235511 34.821 112 70 2 1 109 4 115 1.71e-14 70.5
Msa1211300 MtrunA17_Chr5g0415851 39.437 71 43 0 37 107 6 76 7.24e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211300 AT5G62680.1 60.245 571 220 4 11 579 31 596 0.0 725
Msa1211300 AT1G18880.1 57.601 592 239 6 7 593 2 586 0.0 714
Msa1211300 AT3G47960.1 60.180 555 216 3 26 579 62 612 0.0 697
Msa1211300 AT1G69870.1 46.296 594 291 9 12 596 44 618 0.0 538
Msa1211300 AT1G27080.1 40.986 588 325 9 16 598 4 574 3.43e-152 450
Msa1211300 AT5G28470.2 39.344 549 314 5 28 572 20 553 1.31e-144 430
Msa1211300 AT5G28470.1 39.344 549 312 6 28 572 20 551 4.65e-142 424
Msa1211300 AT1G68570.1 40.385 572 329 8 9 575 4 568 2.78e-141 423
Msa1211300 AT1G27080.2 40.437 549 306 8 54 598 1 532 7.13e-138 412
Msa1211300 AT1G68570.2 40.665 541 312 7 37 575 5 538 6.41e-136 408
Msa1211300 AT1G69860.1 39.091 550 312 5 28 575 21 549 4.05e-132 398
Msa1211300 AT1G52190.1 34.957 575 355 10 8 572 1 566 3.95e-130 395
Msa1211300 AT3G54140.1 36.022 558 342 9 18 575 21 563 7.46e-126 382
Msa1211300 AT3G54140.2 36.022 558 342 9 18 575 21 563 7.46e-126 382
Msa1211300 AT5G01180.2 35.714 574 356 8 3 575 2 563 5.69e-124 378
Msa1211300 AT5G01180.3 35.714 574 356 8 3 575 2 563 5.69e-124 378
Msa1211300 AT5G01180.1 35.714 574 356 8 3 575 2 563 5.69e-124 378
Msa1211300 AT3G16180.1 34.295 589 370 9 9 591 7 584 2.13e-123 377
Msa1211300 AT2G02040.1 36.197 547 339 6 29 575 45 581 5.25e-121 370
Msa1211300 AT1G62200.1 36.545 550 331 6 29 576 56 589 4.79e-119 365
Msa1211300 AT1G62200.2 35.121 578 330 8 29 576 56 618 6.06e-114 353
Msa1211300 AT1G62200.3 35.121 578 330 8 29 576 70 632 6.48e-114 353
Msa1211300 AT3G54450.1 34.188 585 337 10 11 583 2 550 1.05e-111 345
Msa1211300 AT3G45650.1 35.106 564 332 9 28 588 25 557 2.14e-110 342
Msa1211300 AT3G45660.1 33.798 574 347 8 12 583 8 550 9.90e-108 335
Msa1211300 AT3G45660.3 33.798 574 347 8 12 583 8 550 9.90e-108 335
Msa1211300 AT3G45660.2 33.798 574 347 8 12 583 29 571 2.50e-107 335
Msa1211300 AT3G45650.2 33.559 590 332 10 28 588 25 583 1.32e-104 328
Msa1211300 AT3G45680.1 33.672 591 346 12 6 586 2 556 2.80e-104 326
Msa1211300 AT2G40460.1 34.783 575 346 9 29 598 28 578 3.43e-104 327
Msa1211300 AT4G21680.1 33.032 554 358 5 25 574 28 572 3.45e-103 325
Msa1211300 AT3G45720.1 33.627 568 341 9 20 583 13 548 8.99e-103 322
Msa1211300 AT3G53960.1 33.447 586 362 9 2 575 4 573 3.57e-101 320
Msa1211300 AT2G37900.1 34.426 549 336 9 28 575 41 566 4.64e-101 318
Msa1211300 AT2G02020.1 34.111 557 312 7 19 574 40 542 7.43e-101 317
Msa1211300 AT1G32450.1 29.967 614 408 8 4 603 9 614 2.21e-97 310
Msa1211300 AT2G26690.1 33.391 578 365 9 11 586 10 569 3.61e-97 308
Msa1211300 AT3G21670.1 33.993 556 334 8 28 577 32 560 3.45e-95 303
Msa1211300 AT2G26690.2 34.239 552 343 9 37 586 3 536 2.96e-94 300
Msa1211300 AT1G59740.1 31.469 572 370 9 5 571 19 573 4.91e-94 301
Msa1211300 AT3G45700.1 32.348 575 349 10 8 579 1 538 6.52e-94 299
Msa1211300 AT3G45710.1 31.196 577 367 9 9 583 5 553 6.61e-94 299
Msa1211300 AT5G13400.1 31.379 580 382 7 15 587 53 623 1.13e-93 301
Msa1211300 AT2G37900.2 34.059 505 309 9 72 575 6 487 7.03e-92 292
Msa1211300 AT1G12110.1 31.356 590 374 9 12 591 14 582 7.97e-92 295
Msa1211300 AT2G26690.3 34.133 542 337 9 47 586 1 524 2.72e-91 291
Msa1211300 AT1G22540.1 33.040 569 339 10 17 578 22 555 3.85e-90 290
Msa1211300 AT5G46050.1 32.628 567 366 7 27 591 28 580 5.53e-90 290
Msa1211300 AT5G19640.1 30.420 572 370 9 28 597 62 607 2.46e-89 289
Msa1211300 AT1G22550.1 32.297 579 359 8 8 579 11 563 3.76e-89 287
Msa1211300 AT3G45690.1 31.707 574 318 12 12 583 6 507 4.30e-89 285
Msa1211300 AT1G72125.1 32.423 586 354 10 8 578 1 559 5.04e-89 286
Msa1211300 AT5G46040.1 30.664 587 381 8 10 591 12 577 4.96e-88 285
Msa1211300 AT1G72130.1 31.150 565 335 8 20 578 20 536 9.33e-86 277
Msa1211300 AT1G22570.1 32.297 579 358 10 8 578 11 563 4.62e-85 276
Msa1211300 AT1G33440.1 30.584 582 360 11 5 572 16 567 7.38e-84 274
Msa1211300 AT1G27040.1 30.986 568 356 7 17 574 19 560 5.52e-83 271
Msa1211300 AT1G27040.2 30.986 568 356 7 17 574 15 556 7.07e-83 271
Msa1211300 AT1G22570.2 32.605 549 338 9 36 578 4 526 2.17e-81 266
Msa1211300 AT2G02020.2 32.079 558 301 12 19 574 40 521 4.95e-81 265
Msa1211300 AT1G72120.1 30.729 576 362 7 9 578 11 555 1.20e-80 265
Msa1211300 AT1G27040.3 31.502 546 338 7 39 574 9 528 1.94e-80 263
Msa1211300 AT1G72140.1 29.623 557 340 9 28 574 37 551 1.10e-79 262
Msa1211300 AT1G69850.1 30.000 570 381 7 17 575 17 579 3.32e-79 261
Msa1211300 AT5G46050.2 32.573 482 310 6 111 591 1 468 5.61e-74 244
Msa1211300 AT1G72130.2 31.603 443 259 6 142 578 14 418 4.66e-71 235
Msa1211300 AT1G72130.3 31.603 443 259 6 142 578 14 418 4.66e-71 235
Msa1211300 AT5G62730.1 28.192 603 356 13 9 578 30 588 1.46e-67 231
Msa1211300 AT5G62730.2 28.850 565 341 11 34 578 6 529 4.05e-67 228
Msa1211300 AT5G14940.1 28.699 561 345 15 42 582 24 549 2.24e-63 218
Msa1211300 AT3G25260.1 26.970 571 353 14 8 572 3 515 6.55e-60 208
Msa1211300 AT3G01350.1 27.193 570 358 13 42 588 24 559 2.68e-57 202
Msa1211300 AT3G25280.1 24.913 574 369 16 8 572 1 521 6.96e-49 178
Msa1211300 AT5G11570.1 33.846 260 159 2 313 572 230 476 1.09e-45 169
Msa1211300 AT5G11570.1 33.636 220 138 4 27 243 15 229 2.27e-35 139
Msa1211300 AT2G38100.3 23.273 550 355 19 49 583 20 517 9.08e-26 112
Msa1211300 AT2G38100.1 23.273 550 355 19 49 583 14 511 1.04e-25 111
Msa1211300 AT2G38100.2 23.077 546 353 19 53 583 2 495 1.14e-25 111

Find 134 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCACATTTGCTTCCTTTC+TGG 0.050423 8_1:-70867095 Msa1211300:intron
CTTCTTTCATTTCCACATTT+TGG 0.089475 8_1:+70866551 None:intergenic
TTTCTATGTGATACTTATTT+TGG 0.126920 8_1:-70867139 Msa1211300:CDS
GTTACTTTGTATTGTGTTCT+AGG 0.161441 8_1:-70863790 Msa1211300:CDS
GTTCTACCAATTTGGGTTTC+AGG 0.174285 8_1:-70864463 Msa1211300:CDS
TAGTAAGAGTTCTACCAATT+TGG 0.200123 8_1:-70864471 Msa1211300:CDS
TTGTTTGGAAGTTGTTAATT+TGG 0.214202 8_1:-70863813 Msa1211300:CDS
TCATTTCTACTACTTGGATT+TGG 0.222031 8_1:-70866497 Msa1211300:CDS
TTTGAAATTTGTGTTGAAAA+AGG 0.232339 8_1:+70864369 None:intergenic
AAGACTTCTTCCTAAGGTTT+TGG 0.237682 8_1:+70867561 None:intergenic
CATTTCTACTACTTGGATTT+GGG 0.250805 8_1:-70866496 Msa1211300:CDS
TTCTTTCCTGAATCTGTGTT+TGG 0.257557 8_1:+70866407 None:intergenic
ACTTGAACAATATTTGTTAC+AGG 0.278311 8_1:+70866185 None:intergenic
ATCTTGCTTACCAATGATAA+AGG 0.299967 8_1:+70867401 None:intergenic
AGTAAGAGTTCTACCAATTT+GGG 0.305859 8_1:-70864470 Msa1211300:CDS
TTCAATCCAAACACAGATTC+AGG 0.309118 8_1:-70866413 Msa1211300:CDS
GAACTTTGAAATAAAGCTTC+TGG 0.322379 8_1:-70863635 Msa1211300:three_prime_UTR
TGTTTGGAAGTTGTTAATTT+GGG 0.324597 8_1:-70863812 Msa1211300:CDS
GATTCATGGGATGATATTAA+AGG 0.329295 8_1:+70867602 None:intergenic
ATTGATTGATTCATGATTCA+TGG 0.332191 8_1:+70867588 None:intergenic
TCTAATTCTAATAAATACTA+TGG 0.335107 8_1:+70863577 None:intergenic
AAACTAGTTATTTAATAAGT+TGG 0.336457 8_1:-70867527 Msa1211300:five_prime_UTR
CGATGTTAAGCCTAACGATA+TGG 0.336603 8_1:-70864318 Msa1211300:CDS
TTATTACATGATTACTTGTT+TGG 0.345394 8_1:-70863828 Msa1211300:CDS
CAAATGTCATTTCTACTACT+TGG 0.348911 8_1:-70866503 Msa1211300:CDS
ATTAAGTTCTAATTAGTTGA+TGG 0.351206 8_1:-70863663 Msa1211300:three_prime_UTR
AGACCTTGTAACTTAGCATT+TGG 0.352308 8_1:-70866446 Msa1211300:CDS
TATTGTGTTCTAGGTGGTAT+AGG 0.353937 8_1:-70863781 Msa1211300:CDS
GAGAATATGAGAAGTCTTGC+AGG 0.364624 8_1:-70863989 Msa1211300:CDS
TTTCTCATACACCTCAGTTC+AGG 0.371042 8_1:-70866055 Msa1211300:intron
CTTGGTCTTGGAATTCCTGC+TGG 0.371692 8_1:-70866281 Msa1211300:CDS
GGATTTGAACGAAGGGAGAT+TGG 0.377692 8_1:-70863858 Msa1211300:CDS
GTGAGTTGGGCTCTTGGTCT+TGG 0.384641 8_1:-70866293 Msa1211300:CDS
TCATGTGTTGTTTATTTCAC+TGG 0.387143 8_1:-70866245 Msa1211300:CDS
AACACCACTAATCTTTGTTT+CGG 0.387631 8_1:+70863691 None:intergenic
TCTGATGCATTTACTTTGGT+TGG 0.389917 8_1:-70864043 Msa1211300:CDS
GGATTTGGGCTTATGATAGT+AGG 0.391869 8_1:-70866482 Msa1211300:CDS
TTTCTCGGTTCAAATCCTAT+AGG 0.394792 8_1:+70864127 None:intergenic
GAACAAAAGAGACACATCTA+TGG 0.397086 8_1:-70867496 Msa1211300:CDS
TTTGGACGCTACAAAACTCT+TGG 0.399400 8_1:-70867121 Msa1211300:CDS
TTAAATCTGCAACAGGGAAT+TGG 0.401616 8_1:-70863889 Msa1211300:CDS
CTTCTACAAAGAATGGGAAT+TGG 0.402115 8_1:-70864226 Msa1211300:CDS
TGTTGATTACAATTATTCAT+AGG 0.403883 8_1:-70863919 Msa1211300:CDS
GAATCAATAGTTTCTTCAAT+TGG 0.404560 8_1:-70866382 Msa1211300:CDS
AGTATGCCTGAAACCCAAAT+TGG 0.407025 8_1:+70864457 None:intergenic
ATGGCTATTAATAATCCTAT+AGG 0.413331 8_1:-70864142 Msa1211300:CDS
AATATTGTCAATATCTTCAA+TGG 0.418148 8_1:-70867193 Msa1211300:CDS
TTGACGGTTAAATCTGCAAC+AGG 0.418463 8_1:-70863896 Msa1211300:CDS
AATCACACTTCTACAAAGAA+TGG 0.430866 8_1:-70864233 Msa1211300:CDS
AATGACATTTGTCCTGTACT+TGG 0.433383 8_1:+70866515 None:intergenic
GAAGATATTGACAATATTTG+TGG 0.433489 8_1:+70867198 None:intergenic
TATACAAGTAAATGTGAGTT+GGG 0.433642 8_1:-70866306 Msa1211300:CDS
AGCTTGGTGTTGATAGAGTA+AGG 0.434780 8_1:+70866077 None:intergenic
AAGGTCATGCCCTTTATCAT+TGG 0.435084 8_1:-70867411 Msa1211300:intron
GGATCAGATGCAGAACCGTC+AGG 0.440378 8_1:+70864538 None:intergenic
ATCAATAATTCCAAAACCTT+AGG 0.459761 8_1:-70867571 Msa1211300:five_prime_UTR
TATGTGAAGGTAAAAGCAAC+AGG 0.472904 8_1:-70866212 Msa1211300:CDS
ATTCCTCAGTTAGCACTAGC+AGG 0.477266 8_1:-70864070 Msa1211300:CDS
CTTATGATAGTAGGAGCTGC+AGG 0.479508 8_1:-70866473 Msa1211300:CDS
GTAAATGTGAGTTGGGCTCT+TGG 0.482055 8_1:-70866299 Msa1211300:CDS
TTCGGTCCGATTGAAGTGCT+TGG 0.491406 8_1:+70864392 None:intergenic
TACAATTATTCATAGGTTGA+CGG 0.491870 8_1:-70863912 Msa1211300:CDS
ATCACACTTCTACAAAGAAT+GGG 0.492502 8_1:-70864232 Msa1211300:CDS
TCTTGCTTACCAATGATAAA+GGG 0.492775 8_1:+70867402 None:intergenic
TAGTATCCGGTGTGGTAGAA+TGG 0.495604 8_1:-70864177 Msa1211300:CDS
AACACAGATTCAGGAAAGAA+AGG 0.495614 8_1:-70866404 Msa1211300:CDS
GGCGCGATATCTTCCATGTC+GGG 0.500635 8_1:-70864103 Msa1211300:CDS
GTTTCAAATAACAACTATAG+AGG 0.503860 8_1:-70867438 Msa1211300:CDS
AGTCTTCCAAGCACTTCAAT+CGG 0.504676 8_1:-70864398 Msa1211300:CDS
CAATCCGAAACAAAGATTAG+TGG 0.504914 8_1:-70863695 Msa1211300:CDS
AATGATGATGGTACTGATCA+AGG 0.505507 8_1:-70863749 Msa1211300:CDS
AGAATAAAGACTTCTTCCTA+AGG 0.505649 8_1:+70867555 None:intergenic
GCAAGACTTCTCATATTCTC+AGG 0.505728 8_1:+70863992 None:intergenic
ATACTATGCATGTTAGTATC+CGG 0.511470 8_1:-70864190 Msa1211300:CDS
AGACTAACACTGTGTTCTGT+TGG 0.513814 8_1:+70864416 None:intergenic
TATATGTGGCTATAAAGAAA+AGG 0.514570 8_1:-70866160 Msa1211300:CDS
TTGATTGATTCATGATTCAT+GGG 0.518818 8_1:+70867589 None:intergenic
TTTGAGAAGCTAGGAGCCAT+TGG 0.519801 8_1:-70867280 Msa1211300:CDS
AGATTGGTAACCATATCGTT+AGG 0.522148 8_1:+70864308 None:intergenic
CTAGGTGGTATAGGTACAAA+GGG 0.523122 8_1:-70863772 Msa1211300:CDS
GAAAAGTGACAAAGAAAGTG+TGG 0.527633 8_1:-70867472 Msa1211300:CDS
ATATACAAGTAAATGTGAGT+TGG 0.529836 8_1:-70866307 Msa1211300:CDS
ATAGGATTTGAACCGAGAAA+AGG 0.541636 8_1:-70864124 Msa1211300:CDS
ACGGTTCTGCATCTGATCCA+TGG 0.542827 8_1:-70864534 Msa1211300:CDS
AAGATCGTGTAAGAAGCTGC+AGG 0.544793 8_1:+70864343 None:intergenic
TGTTATAATTGATACCAGAA+AGG 0.546328 8_1:+70867081 None:intergenic
GCTCCAAATGCTAAGTTACA+AGG 0.548040 8_1:+70866443 None:intergenic
AATGAAACATTTGAGAAGCT+AGG 0.548041 8_1:-70867289 Msa1211300:CDS
GAAACTCAATCTACAAGAAG+AGG 0.560510 8_1:-70866138 Msa1211300:CDS
CTGAGGTGTATGAGAAAGCT+TGG 0.564035 8_1:+70866061 None:intergenic
AACCATTTGTGCAAAAGTGA+AGG 0.567355 8_1:+70866349 None:intergenic
TTGTGGCTGTAATACTGCTA+AGG 0.568792 8_1:+70867215 None:intergenic
AACAGGGAATTGGTTACCAC+AGG 0.570819 8_1:-70863879 Msa1211300:CDS
CAAATAACAACTATAGAGGA+TGG 0.573016 8_1:-70867434 Msa1211300:CDS
TATAGGATTATTAATAGCCA+TGG 0.573328 8_1:+70864144 None:intergenic
TTATAATAGCTGCTTTGTCA+AGG 0.575374 8_1:+70864581 None:intergenic
TCTAGGTGGTATAGGTACAA+AGG 0.580851 8_1:-70863773 Msa1211300:CDS
AGGTACAAAGGGAATGATGA+TGG 0.582511 8_1:-70863761 Msa1211300:CDS
GAGGTTTGCTAAGGTACCAA+TGG 0.582527 8_1:+70867264 None:intergenic
AATTCTAATAAATACTATGG+TGG 0.583783 8_1:+70863580 None:intergenic
GTGTGGTAGAATGGAAAAGA+AGG 0.585909 8_1:-70864168 Msa1211300:CDS
TAACAACTATAGAGGATGGA+AGG 0.588536 8_1:-70867430 Msa1211300:CDS
TATTGTTCAAGTGATATATG+TGG 0.591824 8_1:-70866174 Msa1211300:CDS
TCTATGCAGTATACAACAAG+TGG 0.592491 8_1:-70864509 Msa1211300:CDS
TATCTTCCATGTCGGGAATG+TGG 0.598260 8_1:-70864096 Msa1211300:CDS
TTGTTATACAACTAACAGCA+TGG 0.599941 8_1:-70866592 Msa1211300:CDS
GAAAACAGCATCAAACCAGC+AGG 0.602141 8_1:+70866266 None:intergenic
AGCATGCATCCACCAAAATG+TGG 0.602631 8_1:-70866563 Msa1211300:CDS
CTCCCTTCGTTCAAATCCTG+TGG 0.602701 8_1:+70863863 None:intergenic
ACATGCATAGAACCAAGTAC+AGG 0.603457 8_1:-70866527 Msa1211300:CDS
ACTTTGTATTGTGTTCTAGG+TGG 0.603924 8_1:-70863787 Msa1211300:CDS
TGGAAGTAAATATTATGTGA+AGG 0.605535 8_1:-70866225 Msa1211300:CDS
AATCAACCACATTCCCGACA+TGG 0.611889 8_1:+70864090 None:intergenic
TACCACAGGATTTGAACGAA+GGG 0.615700 8_1:-70863865 Msa1211300:CDS
TGTATACTGCATAGATACCA+TGG 0.620158 8_1:+70864517 None:intergenic
TGGTACCTTAGCAAACCTCT+TGG 0.621497 8_1:-70867260 Msa1211300:CDS
ATAGACCAAGAGGTTTGCTA+AGG 0.624994 8_1:+70867255 None:intergenic
ACATAGAAAAGCTCCTAGCA+AGG 0.626725 8_1:+70867153 None:intergenic
GATCAGATGCAGAACCGTCA+GGG 0.627732 8_1:+70864539 None:intergenic
GATGGTACTGATCAAGGTAG+TGG 0.629248 8_1:-70863743 Msa1211300:CDS
AGGCGCGATATCTTCCATGT+CGG 0.630902 8_1:-70864104 Msa1211300:CDS
TTACCACAGGATTTGAACGA+AGG 0.642836 8_1:-70863866 Msa1211300:CDS
AGAATATGAGAAGTCTTGCA+GGG 0.652741 8_1:-70863988 Msa1211300:CDS
TTATGATAGTAGGAGCTGCA+GGG 0.663873 8_1:-70866472 Msa1211300:CDS
AAAATCACCGGAAAAGAAGG+CGG 0.665576 8_1:-70864256 Msa1211300:CDS
CTGTTGTAAGATAGACCAAG+AGG 0.671779 8_1:+70867245 None:intergenic
AGAATGGAAAAGAAGGACCA+TGG 0.673688 8_1:-70864161 Msa1211300:CDS
AGATCGTGTAAGAAGCTGCA+GGG 0.675641 8_1:+70864344 None:intergenic
CAAGACAAAATAAACCCTGA+CGG 0.679950 8_1:-70864553 Msa1211300:CDS
TCATGGGATGATATTAAAGG+CGG 0.684136 8_1:+70867605 None:intergenic
AATCCTGCTAGTGCTAACTG+AGG 0.715827 8_1:+70864067 None:intergenic
ATGCATGTTAGTATCCGGTG+TGG 0.719406 8_1:-70864185 Msa1211300:CDS
ATTAGTGGTTACCTGAACTG+AGG 0.728477 8_1:+70866044 None:intergenic
TGACGGTTAAATCTGCAACA+GGG 0.748913 8_1:-70863895 Msa1211300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTTGAATATTGTTTA+AGG - chr8_1:70864207-70864226 Msa1211300:CDS 10.0%
!! CTTATAAAATACAATTTAAT+TGG - chr8_1:70865116-70865135 Msa1211300:intron 10.0%
!!! ACAAATTTCTTTTAAAAAAA+AGG + chr8_1:70867606-70867625 None:intergenic 10.0%
!! AAACTAGTTATTTAATAAGT+TGG - chr8_1:70863543-70863562 Msa1211300:three_prime_UTR 15.0%
!! AATTAGTTGAATATTGTTTA+AGG + chr8_1:70864322-70864341 None:intergenic 15.0%
!!! GTAAAAAATTATTTCTGATA+CGG + chr8_1:70865073-70865092 None:intergenic 15.0%
!! TTACTTGAAATTAAGTTAAA+GGG - chr8_1:70865426-70865445 Msa1211300:intron 15.0%
!! AAAGAGTAATAAATAGTTAA+AGG + chr8_1:70865602-70865621 None:intergenic 15.0%
!!! ACAAAATTATTTTTCGTTAA+TGG + chr8_1:70865658-70865677 None:intergenic 15.0%
!! TTATTCAAATAAGATAAACA+TGG + chr8_1:70866007-70866026 None:intergenic 15.0%
!!! ACTATTTTCAATAAACTATT+TGG - chr8_1:70866027-70866046 Msa1211300:intron 15.0%
!!! CTATTTTCAATAAACTATTT+GGG - chr8_1:70866028-70866047 Msa1211300:intron 15.0%
!! TCTATTATCAAATAGAATTT+GGG + chr8_1:70866055-70866074 None:intergenic 15.0%
!! TTCTATTATCAAATAGAATT+TGG + chr8_1:70866056-70866075 None:intergenic 15.0%
!!! CTATTTTTGTAATCAAATTA+AGG + chr8_1:70866171-70866190 None:intergenic 15.0%
!! TCTAATTCTAATAAATACTA+TGG + chr8_1:70867496-70867515 None:intergenic 15.0%
!! TAGAATTAGAAAGAAAAATA+AGG - chr8_1:70867506-70867525 Msa1211300:exon 15.0%
!!! AATAAGGTATTATTTTTTCT+TGG - chr8_1:70867522-70867541 Msa1211300:five_prime_UTR 15.0%
!! AATATTGTCAATATCTTCAA+TGG - chr8_1:70863877-70863896 Msa1211300:CDS 20.0%
!!! TTTCTATGTGATACTTATTT+TGG - chr8_1:70863931-70863950 Msa1211300:CDS 20.0%
!!! ACAAGTTAATTATGATTTGT+TGG + chr8_1:70864294-70864313 None:intergenic 20.0%
!!! AATTTAATTGGCTTATTTGT+TGG - chr8_1:70865128-70865147 Msa1211300:intron 20.0%
!! GACATAAAAAAAGATAATAG+AGG - chr8_1:70865397-70865416 Msa1211300:intron 20.0%
!! GTTACTTGAAATTAAGTTAA+AGG - chr8_1:70865425-70865444 Msa1211300:intron 20.0%
!!! TTATTTTTCGTTAATGGTAT+TGG + chr8_1:70865652-70865671 None:intergenic 20.0%
!! CTATTATCAAATAGAATTTG+GGG + chr8_1:70866054-70866073 None:intergenic 20.0%
!! TATATATCTGTGTGTTTATA+TGG - chr8_1:70866082-70866101 Msa1211300:CDS 20.0%
!! TTGTAATCAAATTAAGGTTA+AGG + chr8_1:70866165-70866184 None:intergenic 20.0%
!! CTCATATTATCTTAGAATTT+AGG - chr8_1:70866292-70866311 Msa1211300:CDS 20.0%
!! TCTAATTTAACCAACAAAAT+CGG - chr8_1:70866320-70866339 Msa1211300:CDS 20.0%
!! TGAGATATGATATAAAAATG+TGG + chr8_1:70866368-70866387 None:intergenic 20.0%
!! TTTATGAAGAAATCAACAAA+TGG + chr8_1:70866431-70866450 None:intergenic 20.0%
!! TGATTTCTTCATAAAATGAT+TGG - chr8_1:70866436-70866455 Msa1211300:CDS 20.0%
!! AAATGTTCATATGAATTAAC+AGG - chr8_1:70866464-70866483 Msa1211300:CDS 20.0%
!!! TTTGAAATTTGTGTTGAAAA+AGG + chr8_1:70866704-70866723 None:intergenic 20.0%
!!! TGTTGATTACAATTATTCAT+AGG - chr8_1:70867151-70867170 Msa1211300:CDS 20.0%
!! TTATTACATGATTACTTGTT+TGG - chr8_1:70867242-70867261 Msa1211300:CDS 20.0%
!!! ATTAAGTTCTAATTAGTTGA+TGG - chr8_1:70867407-70867426 Msa1211300:intron 20.0%
!! AAAAACAAAAATTACTATGG+TGG + chr8_1:70867462-70867481 None:intergenic 20.0%
!! AGCAAAAACAAAAATTACTA+TGG + chr8_1:70867465-70867484 None:intergenic 20.0%
!! AATTCTAATAAATACTATGG+TGG + chr8_1:70867493-70867512 None:intergenic 20.0%
!! TTGATTGATTCATGATTCAT+GGG + chr8_1:70863484-70863503 None:intergenic 25.0%
!! ATTGATTGATTCATGATTCA+TGG + chr8_1:70863485-70863504 None:intergenic 25.0%
! ATCAATAATTCCAAAACCTT+AGG - chr8_1:70863499-70863518 Msa1211300:three_prime_UTR 25.0%
! GTTTCAAATAACAACTATAG+AGG - chr8_1:70863632-70863651 Msa1211300:three_prime_UTR 25.0%
! AATAATAAGAGTAACATGCA+TGG + chr8_1:70863711-70863730 None:intergenic 25.0%
!!! AATTAATTTGCATATCATGC+AGG - chr8_1:70863757-70863776 Msa1211300:CDS 25.0%
! GAAGATATTGACAATATTTG+TGG + chr8_1:70863875-70863894 None:intergenic 25.0%
! TGTTATAATTGATACCAGAA+AGG + chr8_1:70863992-70864011 None:intergenic 25.0%
! GTGATCAAATACATATGATA+TGG + chr8_1:70864159-70864178 None:intergenic 25.0%
!! TTTAACTAGTTAGCTTAGTT+AGG + chr8_1:70864263-70864282 None:intergenic 25.0%
!!! TAACTCTTTGATTTTGAAAC+AGG - chr8_1:70864449-70864468 Msa1211300:CDS 25.0%
!!! AACTCTTTGATTTTGAAACA+GGG - chr8_1:70864450-70864469 Msa1211300:CDS 25.0%
! GAATCAATAGTTTCTTCAAT+TGG - chr8_1:70864688-70864707 Msa1211300:intron 25.0%
! ATATACAAGTAAATGTGAGT+TGG - chr8_1:70864763-70864782 Msa1211300:intron 25.0%
! TATACAAGTAAATGTGAGTT+GGG - chr8_1:70864764-70864783 Msa1211300:intron 25.0%
! TGGAAGTAAATATTATGTGA+AGG - chr8_1:70864845-70864864 Msa1211300:intron 25.0%
!! ACTTGAACAATATTTGTTAC+AGG + chr8_1:70864888-70864907 None:intergenic 25.0%
! TATTGTTCAAGTGATATATG+TGG - chr8_1:70864896-70864915 Msa1211300:intron 25.0%
! TATATGTGGCTATAAAGAAA+AGG - chr8_1:70864910-70864929 Msa1211300:intron 25.0%
! TGACGTAAAAAGAAAATGAT+GGG + chr8_1:70865201-70865220 None:intergenic 25.0%
! ATGACGTAAAAAGAAAATGA+TGG + chr8_1:70865202-70865221 None:intergenic 25.0%
! GATATGATATAAAAATGTGG+TGG + chr8_1:70866365-70866384 None:intergenic 25.0%
! AATTTGTGTTGAAAAAGGTT+CGG + chr8_1:70866699-70866718 None:intergenic 25.0%
! TATAGGATTATTAATAGCCA+TGG + chr8_1:70866929-70866948 None:intergenic 25.0%
! ATGGCTATTAATAATCCTAT+AGG - chr8_1:70866928-70866947 Msa1211300:intron 25.0%
!! ATTTTCTGATGCATTTACTT+TGG - chr8_1:70867023-70867042 Msa1211300:intron 25.0%
!! TACAATTATTCATAGGTTGA+CGG - chr8_1:70867158-70867177 Msa1211300:CDS 25.0%
! TTGTTTGGAAGTTGTTAATT+TGG - chr8_1:70867257-70867276 Msa1211300:CDS 25.0%
! TGTTTGGAAGTTGTTAATTT+GGG - chr8_1:70867258-70867277 Msa1211300:CDS 25.0%
GATTCATGGGATGATATTAA+AGG + chr8_1:70863471-70863490 None:intergenic 30.0%
AGAATAAAGACTTCTTCCTA+AGG + chr8_1:70863518-70863537 None:intergenic 30.0%
CAAATAACAACTATAGAGGA+TGG - chr8_1:70863636-70863655 Msa1211300:three_prime_UTR 30.0%
TCTTGCTTACCAATGATAAA+GGG + chr8_1:70863671-70863690 None:intergenic 30.0%
ATCTTGCTTACCAATGATAA+AGG + chr8_1:70863672-70863691 None:intergenic 30.0%
AATGAAACATTTGAGAAGCT+AGG - chr8_1:70863781-70863800 Msa1211300:CDS 30.0%
AATTTGAATCTCTTCAGAGA+TGG - chr8_1:70864377-70864396 Msa1211300:CDS 30.0%
!!! ACTCTTTGATTTTGAAACAG+GGG - chr8_1:70864451-70864470 Msa1211300:CDS 30.0%
TTGTTATACAACTAACAGCA+TGG - chr8_1:70864478-70864497 Msa1211300:CDS 30.0%
! CTTCTTTCATTTCCACATTT+TGG + chr8_1:70864522-70864541 None:intergenic 30.0%
! CAAATGTCATTTCTACTACT+TGG - chr8_1:70864567-70864586 Msa1211300:CDS 30.0%
TCATTTCTACTACTTGGATT+TGG - chr8_1:70864573-70864592 Msa1211300:CDS 30.0%
CATTTCTACTACTTGGATTT+GGG - chr8_1:70864574-70864593 Msa1211300:CDS 30.0%
!! TCATGTGTTGTTTATTTCAC+TGG - chr8_1:70864825-70864844 Msa1211300:intron 30.0%
! AAATACTCGACATTGATTAG+TGG + chr8_1:70865044-70865063 None:intergenic 30.0%
!! TCATATGCAAACGGATTAAA+AGG + chr8_1:70865231-70865250 None:intergenic 30.0%
CTTGAAAGTTCATATGCAAA+CGG + chr8_1:70865240-70865259 None:intergenic 30.0%
ACGTCAAGAGAACTAAATAA+AGG + chr8_1:70865794-70865813 None:intergenic 30.0%
!! TTTATTTAGTTCTCTTGACG+TGG - chr8_1:70865793-70865812 Msa1211300:intron 30.0%
!! TTATTTAGTTCTCTTGACGT+GGG - chr8_1:70865794-70865813 Msa1211300:intron 30.0%
ACACTTGCACAAATATGTAT+CGG + chr8_1:70865935-70865954 None:intergenic 30.0%
ATACATATTTGTGCAAGTGT+TGG - chr8_1:70865935-70865954 Msa1211300:intron 30.0%
! TTATAATAGCTGCTTTGTCA+AGG + chr8_1:70866492-70866511 None:intergenic 30.0%
TAGTAAGAGTTCTACCAATT+TGG - chr8_1:70866599-70866618 Msa1211300:CDS 30.0%
AGTAAGAGTTCTACCAATTT+GGG - chr8_1:70866600-70866619 Msa1211300:CDS 30.0%
AATCACACTTCTACAAAGAA+TGG - chr8_1:70866837-70866856 Msa1211300:intron 30.0%
ATCACACTTCTACAAAGAAT+GGG - chr8_1:70866838-70866857 Msa1211300:intron 30.0%
ATACTATGCATGTTAGTATC+CGG - chr8_1:70866880-70866899 Msa1211300:intron 30.0%
! GTTACTTTGTATTGTGTTCT+AGG - chr8_1:70867280-70867299 Msa1211300:CDS 30.0%
! AACACCACTAATCTTTGTTT+CGG + chr8_1:70867382-70867401 None:intergenic 30.0%
!! GAACTTTGAAATAAAGCTTC+TGG - chr8_1:70867435-70867454 Msa1211300:CDS 30.0%
TCATGGGATGATATTAAAGG+CGG + chr8_1:70863468-70863487 None:intergenic 35.0%
! AAGACTTCTTCCTAAGGTTT+TGG + chr8_1:70863512-70863531 None:intergenic 35.0%
GAACAAAAGAGACACATCTA+TGG - chr8_1:70863574-70863593 Msa1211300:three_prime_UTR 35.0%
GAAAAGTGACAAAGAAAGTG+TGG - chr8_1:70863598-70863617 Msa1211300:three_prime_UTR 35.0%
TAACAACTATAGAGGATGGA+AGG - chr8_1:70863640-70863659 Msa1211300:three_prime_UTR 35.0%
! CTTTCATTTCCACATTTTGG+TGG + chr8_1:70864519-70864538 None:intergenic 35.0%
AATGACATTTGTCCTGTACT+TGG + chr8_1:70864558-70864577 None:intergenic 35.0%
AGACCTTGTAACTTAGCATT+TGG - chr8_1:70864624-70864643 Msa1211300:intron 35.0%
TTCAATCCAAACACAGATTC+AGG - chr8_1:70864657-70864676 Msa1211300:intron 35.0%
TTCTTTCCTGAATCTGTGTT+TGG + chr8_1:70864666-70864685 None:intergenic 35.0%
AACACAGATTCAGGAAAGAA+AGG - chr8_1:70864666-70864685 Msa1211300:intron 35.0%
!! TACCTTCACTTTTGCACAAA+TGG - chr8_1:70864719-70864738 Msa1211300:intron 35.0%
AACCATTTGTGCAAAAGTGA+AGG + chr8_1:70864724-70864743 None:intergenic 35.0%
TATGTGAAGGTAAAAGCAAC+AGG - chr8_1:70864858-70864877 Msa1211300:intron 35.0%
GAAACTCAATCTACAAGAAG+AGG - chr8_1:70864932-70864951 Msa1211300:intron 35.0%
GTATCTTGTCTTTATCCTGT+TGG + chr8_1:70865175-70865194 None:intergenic 35.0%
! AAGGGCGACAAAAGTAATTT+TGG - chr8_1:70865444-70865463 Msa1211300:intron 35.0%
AAGCGACTTATAAGAAAGGA+GGG + chr8_1:70865504-70865523 None:intergenic 35.0%
AAAGCGACTTATAAGAAAGG+AGG + chr8_1:70865505-70865524 None:intergenic 35.0%
TCCTTTCTTATAAGTCGCTT+TGG - chr8_1:70865504-70865523 Msa1211300:intron 35.0%
! CCTTTCTTATAAGTCGCTTT+GGG - chr8_1:70865505-70865524 Msa1211300:intron 35.0%
! TTGCACAAATATGTATCGGT+TGG + chr8_1:70865931-70865950 None:intergenic 35.0%
!! ATATTTGTGCAAGTGTTGGT+TGG - chr8_1:70865939-70865958 Msa1211300:intron 35.0%
!! ACTATACAAGCCGATTTTGT+TGG + chr8_1:70866333-70866352 None:intergenic 35.0%
!!! AGGGTTTATTTTGTCTTGTG+GGG + chr8_1:70866515-70866534 None:intergenic 35.0%
!!! CAGGGTTTATTTTGTCTTGT+GGG + chr8_1:70866516-70866535 None:intergenic 35.0%
!!! TCAGGGTTTATTTTGTCTTG+TGG + chr8_1:70866517-70866536 None:intergenic 35.0%
CAAGACAAAATAAACCCTGA+CGG - chr8_1:70866517-70866536 Msa1211300:CDS 35.0%
TGTATACTGCATAGATACCA+TGG + chr8_1:70866556-70866575 None:intergenic 35.0%
TCTATGCAGTATACAACAAG+TGG - chr8_1:70866561-70866580 Msa1211300:CDS 35.0%
! AGATTGGTAACCATATCGTT+AGG + chr8_1:70866765-70866784 None:intergenic 35.0%
! ACGATTTTTCTGTCGTAGAT+TGG + chr8_1:70866781-70866800 None:intergenic 35.0%
CCAACAATGAGAAAAATCAC+CGG - chr8_1:70866802-70866821 Msa1211300:intron 35.0%
AGAAAAATCACCGGAAAAGA+AGG - chr8_1:70866811-70866830 Msa1211300:intron 35.0%
CTTCTACAAAGAATGGGAAT+TGG - chr8_1:70866844-70866863 Msa1211300:intron 35.0%
TTTCTCGGTTCAAATCCTAT+AGG + chr8_1:70866946-70866965 None:intergenic 35.0%
ATAGGATTTGAACCGAGAAA+AGG - chr8_1:70866946-70866965 Msa1211300:intron 35.0%
TCTGATGCATTTACTTTGGT+TGG - chr8_1:70867027-70867046 Msa1211300:intron 35.0%
AGAATATGAGAAGTCTTGCA+GGG - chr8_1:70867082-70867101 Msa1211300:intron 35.0%
TTAAATCTGCAACAGGGAAT+TGG - chr8_1:70867181-70867200 Msa1211300:CDS 35.0%
! ACTTTGTATTGTGTTCTAGG+TGG - chr8_1:70867283-70867302 Msa1211300:CDS 35.0%
! TATTGTGTTCTAGGTGGTAT+AGG - chr8_1:70867289-70867308 Msa1211300:CDS 35.0%
!! AATGATGATGGTACTGATCA+AGG - chr8_1:70867321-70867340 Msa1211300:intron 35.0%
CAATCCGAAACAAAGATTAG+TGG - chr8_1:70867375-70867394 Msa1211300:intron 35.0%
AAGGTCATGCCCTTTATCAT+TGG - chr8_1:70863659-70863678 Msa1211300:three_prime_UTR 40.0%
!! ATAGACCAAGAGGTTTGCTA+AGG + chr8_1:70863818-70863837 None:intergenic 40.0%
CTGTTGTAAGATAGACCAAG+AGG + chr8_1:70863828-70863847 None:intergenic 40.0%
TTGTGGCTGTAATACTGCTA+AGG + chr8_1:70863858-70863877 None:intergenic 40.0%
ACATAGAAAAGCTCCTAGCA+AGG + chr8_1:70863920-70863939 None:intergenic 40.0%
TTTGGACGCTACAAAACTCT+TGG - chr8_1:70863949-70863968 Msa1211300:CDS 40.0%
CTAATTCGTCAACGTCAACA+AGG - chr8_1:70864336-70864355 Msa1211300:CDS 40.0%
ACATGCATAGAACCAAGTAC+AGG - chr8_1:70864543-70864562 Msa1211300:CDS 40.0%
GGATTTGGGCTTATGATAGT+AGG - chr8_1:70864588-70864607 Msa1211300:intron 40.0%
TTATGATAGTAGGAGCTGCA+GGG - chr8_1:70864598-70864617 Msa1211300:intron 40.0%
GCTCCAAATGCTAAGTTACA+AGG + chr8_1:70864630-70864649 None:intergenic 40.0%
!! AGCTTGGTGTTGATAGAGTA+AGG + chr8_1:70864996-70865015 None:intergenic 40.0%
TTTCTCATACACCTCAGTTC+AGG - chr8_1:70865015-70865034 Msa1211300:intron 40.0%
ATTAGTGGTTACCTGAACTG+AGG + chr8_1:70865029-70865048 None:intergenic 40.0%
CCCAAAGCGACTTATAAGAA+AGG + chr8_1:70865508-70865527 None:intergenic 40.0%
!! CACAAATATGTATCGGTTGG+AGG + chr8_1:70865928-70865947 None:intergenic 40.0%
!! CAAAATCGGCTTGTATAGTG+AGG - chr8_1:70866334-70866353 Msa1211300:CDS 40.0%
! GTTCTACCAATTTGGGTTTC+AGG - chr8_1:70866607-70866626 Msa1211300:intron 40.0%
AGTATGCCTGAAACCCAAAT+TGG + chr8_1:70866616-70866635 None:intergenic 40.0%
AGACTAACACTGTGTTCTGT+TGG + chr8_1:70866657-70866676 None:intergenic 40.0%
AGTCTTCCAAGCACTTCAAT+CGG - chr8_1:70866672-70866691 Msa1211300:intron 40.0%
CGATGTTAAGCCTAACGATA+TGG - chr8_1:70866752-70866771 Msa1211300:intron 40.0%
! CCGGTGATTTTTCTCATTGT+TGG + chr8_1:70866805-70866824 None:intergenic 40.0%
AAAATCACCGGAAAAGAAGG+CGG - chr8_1:70866814-70866833 Msa1211300:intron 40.0%
! TCTTTTCCATTCTACCACAC+CGG + chr8_1:70866902-70866921 None:intergenic 40.0%
GTGTGGTAGAATGGAAAAGA+AGG - chr8_1:70866902-70866921 Msa1211300:intron 40.0%
AGAATGGAAAAGAAGGACCA+TGG - chr8_1:70866909-70866928 Msa1211300:intron 40.0%
GCAAGACTTCTCATATTCTC+AGG + chr8_1:70867081-70867100 None:intergenic 40.0%
GAGAATATGAGAAGTCTTGC+AGG - chr8_1:70867081-70867100 Msa1211300:intron 40.0%
TTGACGGTTAAATCTGCAAC+AGG - chr8_1:70867174-70867193 Msa1211300:CDS 40.0%
TGACGGTTAAATCTGCAACA+GGG - chr8_1:70867175-70867194 Msa1211300:CDS 40.0%
TTACCACAGGATTTGAACGA+AGG - chr8_1:70867204-70867223 Msa1211300:CDS 40.0%
TACCACAGGATTTGAACGAA+GGG - chr8_1:70867205-70867224 Msa1211300:CDS 40.0%
TCTAGGTGGTATAGGTACAA+AGG - chr8_1:70867297-70867316 Msa1211300:intron 40.0%
CTAGGTGGTATAGGTACAAA+GGG - chr8_1:70867298-70867317 Msa1211300:intron 40.0%
AGGTACAAAGGGAATGATGA+TGG - chr8_1:70867309-70867328 Msa1211300:intron 40.0%
TTTGAGAAGCTAGGAGCCAT+TGG - chr8_1:70863790-70863809 Msa1211300:CDS 45.0%
!! GAGGTTTGCTAAGGTACCAA+TGG + chr8_1:70863809-70863828 None:intergenic 45.0%
TGGTACCTTAGCAAACCTCT+TGG - chr8_1:70863810-70863829 Msa1211300:CDS 45.0%
CTGCACATTTGCTTCCTTTC+TGG - chr8_1:70863975-70863994 Msa1211300:CDS 45.0%
!! CGTCAACAAGGTGTTACTTC+AGG - chr8_1:70864348-70864367 Msa1211300:CDS 45.0%
AGCATGCATCCACCAAAATG+TGG - chr8_1:70864507-70864526 Msa1211300:CDS 45.0%
CTTATGATAGTAGGAGCTGC+AGG - chr8_1:70864597-70864616 Msa1211300:intron 45.0%
! GTAAATGTGAGTTGGGCTCT+TGG - chr8_1:70864771-70864790 Msa1211300:intron 45.0%
GAAAACAGCATCAAACCAGC+AGG + chr8_1:70864807-70864826 None:intergenic 45.0%
CTGAGGTGTATGAGAAAGCT+TGG + chr8_1:70865012-70865031 None:intergenic 45.0%
ACGACTAAAGCGTGACCAAT+TGG - chr8_1:70866243-70866262 Msa1211300:CDS 45.0%
AACGCATTCGACGAACCAAT+TGG + chr8_1:70866261-70866280 None:intergenic 45.0%
AGATCGTGTAAGAAGCTGCA+GGG + chr8_1:70866729-70866748 None:intergenic 45.0%
AAGATCGTGTAAGAAGCTGC+AGG + chr8_1:70866730-70866749 None:intergenic 45.0%
! TGTGATTCCGCCTTCTTTTC+CGG + chr8_1:70866824-70866843 None:intergenic 45.0%
ATGCATGTTAGTATCCGGTG+TGG - chr8_1:70866885-70866904 Msa1211300:intron 45.0%
TAGTATCCGGTGTGGTAGAA+TGG - chr8_1:70866893-70866912 Msa1211300:intron 45.0%
! GAAGATATCGCGCCTTTTCT+CGG + chr8_1:70866961-70866980 None:intergenic 45.0%
TATCTTCCATGTCGGGAATG+TGG - chr8_1:70866974-70866993 Msa1211300:intron 45.0%
AATCAACCACATTCCCGACA+TGG + chr8_1:70866983-70867002 None:intergenic 45.0%
ATTCCTCAGTTAGCACTAGC+AGG - chr8_1:70867000-70867019 Msa1211300:intron 45.0%
AATCCTGCTAGTGCTAACTG+AGG + chr8_1:70867006-70867025 None:intergenic 45.0%
! GTCAGTGTTTTTCTGTGGCT+TGG - chr8_1:70867104-70867123 Msa1211300:CDS 45.0%
AACAGGGAATTGGTTACCAC+AGG - chr8_1:70867191-70867210 Msa1211300:CDS 45.0%
GGATTTGAACGAAGGGAGAT+TGG - chr8_1:70867212-70867231 Msa1211300:CDS 45.0%
!! GATGGTACTGATCAAGGTAG+TGG - chr8_1:70867327-70867346 Msa1211300:intron 45.0%
!!! ATAATTTTTTACTATTTAAT+TGG - chr8_1:70865081-70865100 Msa1211300:intron 5.0%
! GCTAGTCTAGCTACCTTGCT+AGG - chr8_1:70863904-70863923 Msa1211300:CDS 50.0%
GTACTACAATCGCGCTGTCA+AGG - chr8_1:70864102-70864121 Msa1211300:CDS 50.0%
!! CTTGGTCTTGGAATTCCTGC+TGG - chr8_1:70864789-70864808 Msa1211300:intron 50.0%
TAGAAACTGCGAGCACCAAC+AGG - chr8_1:70865157-70865176 Msa1211300:intron 50.0%
GATCAGATGCAGAACCGTCA+GGG + chr8_1:70866534-70866553 None:intergenic 50.0%
ACGGTTCTGCATCTGATCCA+TGG - chr8_1:70866536-70866555 Msa1211300:CDS 50.0%
! TTCGGTCCGATTGAAGTGCT+TGG + chr8_1:70866681-70866700 None:intergenic 50.0%
AGGCGCGATATCTTCCATGT+CGG - chr8_1:70866966-70866985 Msa1211300:intron 50.0%
! GCAGGGTCAGTGTTTTTCTG+TGG - chr8_1:70867099-70867118 Msa1211300:CDS 50.0%
CTCCCTTCGTTCAAATCCTG+TGG + chr8_1:70867210-70867229 None:intergenic 50.0%
TGATATGGTCGTGAGTCGCG+AGG + chr8_1:70864144-70864163 None:intergenic 55.0%
! GTGAGTTGGGCTCTTGGTCT+TGG - chr8_1:70864777-70864796 Msa1211300:intron 55.0%
GGATCAGATGCAGAACCGTC+AGG + chr8_1:70866535-70866554 None:intergenic 55.0%
GGCGCGATATCTTCCATGTC+GGG - chr8_1:70866967-70866986 Msa1211300:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70863453 70867639 70863453 ID=Msa1211300;Name=Msa1211300
chr8_1 mRNA 70863453 70867639 70863453 ID=Msa1211300-mRNA-1;Parent=Msa1211300;Name=Msa1211300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=119|1|1|1|1|1|4|235|603
chr8_1 exon 70863453 70864606 70863453 ID=Msa1211300-mRNA-1:exon:23722;Parent=Msa1211300-mRNA-1
chr8_1 exon 70866056 70866621 70866056 ID=Msa1211300-mRNA-1:exon:23721;Parent=Msa1211300-mRNA-1
chr8_1 exon 70867096 70867313 70867096 ID=Msa1211300-mRNA-1:exon:23720;Parent=Msa1211300-mRNA-1
chr8_1 exon 70867412 70867639 70867412 ID=Msa1211300-mRNA-1:exon:23719;Parent=Msa1211300-mRNA-1
chr8_1 five_prime_UTR 70867521 70867639 70867521 ID=Msa1211300-mRNA-1:five_prime_utr;Parent=Msa1211300-mRNA-1
chr8_1 CDS 70867412 70867520 70867412 ID=Msa1211300-mRNA-1:cds;Parent=Msa1211300-mRNA-1
chr8_1 CDS 70867096 70867313 70867096 ID=Msa1211300-mRNA-1:cds;Parent=Msa1211300-mRNA-1
chr8_1 CDS 70866056 70866621 70866056 ID=Msa1211300-mRNA-1:cds;Parent=Msa1211300-mRNA-1
chr8_1 CDS 70863688 70864606 70863688 ID=Msa1211300-mRNA-1:cds;Parent=Msa1211300-mRNA-1
chr8_1 three_prime_UTR 70863453 70863687 70863453 ID=Msa1211300-mRNA-1:three_prime_utr;Parent=Msa1211300-mRNA-1
Gene Sequence

>Msa1211300

ATGAACAAAAGAGACACATCTATGGAGAAAAGTGACAAAGAAAGTGTGGAAAACAAGCAAGTTTCAAATAACAACTATAGAGGATGGAAGGTCATGCCCTTTATCATTGGAAATGAAACATTTGAGAAGCTAGGAGCCATTGGTACCTTAGCAAACCTCTTGGTCTATCTTACAACAGTCTTCAACCTTAGCAGTATTACAGCCACAAATATTGTCAATATCTTCAATGGAAGTGCTAGTCTAGCTACCTTGCTAGGAGCTTTTCTATGTGATACTTATTTTGGACGCTACAAAACTCTTGGATTCTGCACATTTGCTTCCTTTCTGGGGTTGCTTGTTATACAACTAACAGCATGGATTAAAAGCATGCATCCACCAAAATGTGGAAATGAAAGAAGCACATGCATAGAACCAAGTACAGGACAAATGTCATTTCTACTACTTGGATTTGGGCTTATGATAGTAGGAGCTGCAGGGATTAGACCTTGTAACTTAGCATTTGGAGCTGATCAATTCAATCCAAACACAGATTCAGGAAAGAAAGGAATCAATAGTTTCTTCAATTGGTATTTTTTTACCTTCACTTTTGCACAAATGGTTTCTTTGTCACTAATTGTTTATATACAAGTAAATGTGAGTTGGGCTCTTGGTCTTGGAATTCCTGCTGGTTTGATGCTGTTTTCATGTGTTGTTTATTTCACTGGAAGTAAATATTATGTGAAGGTAAAAGCAACAGGTAGTCCTGTAACAAATATTGTTCAAGTGATATATGTGGCTATAAAGAAAAGGAAACTCAATCTACAAGAAGAGGATGAGTATTCATTGCTTTCTCTTTTTAGCTATATATCTCCTTACTCTATCAACACCAAGCTTTCTCATACACCTCAGTTCAGGTTCCTTGACAAAGCAGCTATTATAACCCCACAAGACAAAATAAACCCTGACGGTTCTGCATCTGATCCATGGTATCTATGCAGTATACAACAAGTGGAAGAAGTGAAATGCTTAGTAAGAGTTCTACCAATTTGGGTTTCAGGCATACTCTATTATGTTGCATTAGTCCAACAGAACACAGTGTTAGTCTTCCAAGCACTTCAATCGGACCGAACCTTTTTCAACACAAATTTCAAAATCCCTGCAGCTTCTTACACGATCTTCACGATGTTAAGCCTAACGATATGGTTACCAATCTACGACAGAAAAATCGTACCAACAATGAGAAAAATCACCGGAAAAGAAGGCGGAATCACACTTCTACAAAGAATGGGAATTGGAATGTTTATTGCTATACTATGCATGTTAGTATCCGGTGTGGTAGAATGGAAAAGAAGGACCATGGCTATTAATAATCCTATAGGATTTGAACCGAGAAAAGGCGCGATATCTTCCATGTCGGGAATGTGGTTGATTCCTCAGTTAGCACTAGCAGGATTTTCTGATGCATTTACTTTGGTTGGTCAAGTTGAATTTTACTACAAACAGTTTCCTGAGAATATGAGAAGTCTTGCAGGGTCAGTGTTTTTCTGTGGCTTGGCACTATCAAGTTATTTTAGTAGTTTGTTGATTACAATTATTCATAGGTTGACGGTTAAATCTGCAACAGGGAATTGGTTACCACAGGATTTGAACGAAGGGAGATTGGATTACTTTTATTACATGATTACTTGTTTGGAAGTTGTTAATTTGGGTTACTTTGTATTGTGTTCTAGGTGGTATAGGTACAAAGGGAATGATGATGGTACTGATCAAGGTAGTGGTGTTGAACTTGATCAAGTGTCTAAACAATCCGAAACAAAGATTAGTGGTGTTTAG

Protein sequence

>Msa1211300

MNKRDTSMEKSDKESVENKQVSNNNYRGWKVMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLSSITATNIVNIFNGSASLATLLGAFLCDTYFGRYKTLGFCTFASFLGLLVIQLTAWIKSMHPPKCGNERSTCIEPSTGQMSFLLLGFGLMIVGAAGIRPCNLAFGADQFNPNTDSGKKGINSFFNWYFFTFTFAQMVSLSLIVYIQVNVSWALGLGIPAGLMLFSCVVYFTGSKYYVKVKATGSPVTNIVQVIYVAIKKRKLNLQEEDEYSLLSLFSYISPYSINTKLSHTPQFRFLDKAAIITPQDKINPDGSASDPWYLCSIQQVEEVKCLVRVLPIWVSGILYYVALVQQNTVLVFQALQSDRTFFNTNFKIPAASYTIFTMLSLTIWLPIYDRKIVPTMRKITGKEGGITLLQRMGIGMFIAILCMLVSGVVEWKRRTMAINNPIGFEPRKGAISSMSGMWLIPQLALAGFSDAFTLVGQVEFYYKQFPENMRSLAGSVFFCGLALSSYFSSLLITIIHRLTVKSATGNWLPQDLNEGRLDYFYYMITCLEVVNLGYFVLCSRWYRYKGNDDGTDQGSGVELDQVSKQSETKISGV*