AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514000 MtrunA17_Chr3g0122151 97.973 148 3 0 1 148 1 148 1.20e-97 292
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514000 AT4G14210.1 52.703 148 52 2 1 148 1 130 3.50e-41 144
Msa0514000 AT4G14210.3 52.703 148 52 2 1 148 1 130 3.50e-41 144
Msa0514000 AT4G14210.2 52.703 148 52 2 1 148 1 130 3.50e-41 144

Find 44 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATTTAAATTGGCAAAT+TGG 0.140773 3_4:-64646180 Msa0514000:CDS
CCAATTTGCCAATTTAAATT+TGG 0.165817 3_4:+64646180 None:intergenic
TATCATCACCAAATTTAAAT+TGG 0.232393 3_4:-64646188 Msa0514000:CDS
ATCTTTCAAATGGCTCTATA+TGG 0.284716 3_4:-64646216 Msa0514000:exon
CTTGTCAACTGCAAAGTATT+TGG 0.292863 3_4:-64645063 Msa0514000:CDS
CAAATTTAAATTGGCAAATT+GGG 0.316027 3_4:-64646179 Msa0514000:CDS
CTCGTTCTGCTAAGTGTAAC+AGG 0.317758 3_4:-64646035 Msa0514000:CDS
CCTTTGAAGGTTGTTATTGC+TGG 0.358480 3_4:-64645880 Msa0514000:CDS
CTGCTAAGTGTAACAGGTTA+AGG 0.368537 3_4:-64646029 Msa0514000:CDS
TCTCTTGCCTCCAGCAATAT+AGG 0.371739 3_4:+64645023 None:intergenic
AGGTTCATTTAAGATGTGTT+GGG 0.379707 3_4:+64646350 None:intergenic
TCGTCCTACTAAACCTTTGA+AGG 0.392812 3_4:-64645893 Msa0514000:CDS
CTGGAGGCAAGAGATGTTCT+AGG 0.395758 3_4:-64645014 Msa0514000:CDS
GAACCATGGTTCTCCTTTGA+AGG 0.397907 3_4:-64646007 Msa0514000:CDS
AAGCCACCACGCCACTCTAT+AGG 0.405794 3_4:+64646330 None:intergenic
CAAATTATCCCAGGACTGGC+TGG 0.420113 3_4:-64645086 Msa0514000:intron
ACAACCTTCAAAGGTTTAGT+AGG 0.422656 3_4:+64645889 None:intergenic
TAGGTTCATTTAAGATGTGT+TGG 0.452032 3_4:+64646349 None:intergenic
TGGTCACAAGCCTATATTGC+TGG 0.460096 3_4:-64645033 Msa0514000:CDS
GCAAAGTATTTGGCAGATGC+TGG 0.502628 3_4:-64645053 Msa0514000:CDS
AAGGTTGTTATTGCTGGTGC+AGG 0.509252 3_4:-64645874 Msa0514000:intron
AAGAAATGAAGACTAGTTGG+TGG 0.512044 3_4:+64646305 None:intergenic
ATATGAGTTCATAGAAGAAG+AGG 0.532317 3_4:+64646134 None:intergenic
GAGAAGAAATGAAGACTAGT+TGG 0.535144 3_4:+64646302 None:intergenic
TTTCAATGGGTCTTAACTTG+AGG 0.539434 3_4:-64646080 Msa0514000:CDS
CCAGCAATAACAACCTTCAA+AGG 0.553145 3_4:+64645880 None:intergenic
AATGAAATTGAAAAGAGTAA+TGG 0.558061 3_4:+64646256 None:intergenic
GGTTCATTTAAGATGTGTTG+GGG 0.561473 3_4:+64646351 None:intergenic
TCAATGCAAACAACCTTCAA+AGG 0.562970 3_4:+64645994 None:intergenic
AAGAGATGTTCTAGGTGGAA+AGG 0.566226 3_4:-64645006 None:intergenic
TTAACAGTATCATCAAGCTC+AGG 0.581575 3_4:+64645961 None:intergenic
GTATCATCAAGCTCAGGACG+TGG 0.587099 3_4:+64645967 None:intergenic
AGAGTAATGGCAATTGATGA+TGG 0.589606 3_4:+64646269 None:intergenic
TTCAAAGGTTTAGTAGGACG+AGG 0.591339 3_4:+64645895 None:intergenic
AGGACGAGGAGAAGCACGAA+AGG 0.592066 3_4:+64645909 None:intergenic
TCATTTAAGATGTGTTGGGG+TGG 0.598126 3_4:+64646354 None:intergenic
TGTAACAGGTTAAGGAACCA+TGG 0.633408 3_4:-64646021 Msa0514000:CDS
GTAATGGCAATTGATGATGG+TGG 0.656444 3_4:+64646272 None:intergenic
TCTTAAATGAACCTATAGAG+TGG 0.675070 3_4:-64646341 Msa0514000:five_prime_UTR
TCACAAGCCTATATTGCTGG+AGG 0.676636 3_4:-64645030 Msa0514000:CDS
AATGAACCTATAGAGTGGCG+TGG 0.677490 3_4:-64646336 Msa0514000:five_prime_UTR
GAGGCAAGAGATGTTCTAGG+TGG 0.699892 3_4:-64645011 Msa0514000:CDS
GAACCTATAGAGTGGCGTGG+TGG 0.702802 3_4:-64646333 Msa0514000:five_prime_UTR
CAACCTTCAAAGGAGAACCA+TGG 0.712166 3_4:+64646004 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAATTTCAAATGAAA+AGG - chr3_4:64646179-64646198 Msa0514000:CDS 10.0%
!! TAATATAATTTCAAATGAAA+AGG - chr3_4:64646179-64646198 Msa0514000:CDS 10.0%
!!! TCCATATTTTTTTTCTTTAT+CGG + chr3_4:64646135-64646154 None:intergenic 15.0%
!!! TCCATATTTTTTTTCTTTAT+CGG + chr3_4:64646135-64646154 None:intergenic 15.0%
!! AATGAAATTGAAAAGAGTAA+TGG + chr3_4:64645133-64645152 None:intergenic 20.0%
!! TCAAAAATTCATCTTTCAAA+TGG - chr3_4:64645160-64645179 Msa0514000:intron 20.0%
!! TATCATCACCAAATTTAAAT+TGG - chr3_4:64645198-64645217 Msa0514000:intron 20.0%
!! CAAATTTAAATTGGCAAATT+GGG - chr3_4:64645207-64645226 Msa0514000:intron 20.0%
!! TTTGATACAAAAAACAAGAT+GGG + chr3_4:64645547-64645566 None:intergenic 20.0%
!!! TTTTGATACAAAAAACAAGA+TGG + chr3_4:64645548-64645567 None:intergenic 20.0%
!!! ATTTGTTGTTTTTGTTCTAT+TGG - chr3_4:64645586-64645605 Msa0514000:intron 20.0%
!!! TTTGTTGTTTTTGTTCTATT+GGG - chr3_4:64645587-64645606 Msa0514000:intron 20.0%
!! AAATAGTCAACATGATATTA+TGG + chr3_4:64646207-64646226 None:intergenic 20.0%
!! AATGAAATTGAAAAGAGTAA+TGG + chr3_4:64645133-64645152 None:intergenic 20.0%
!! TCAAAAATTCATCTTTCAAA+TGG - chr3_4:64645160-64645179 Msa0514000:intron 20.0%
!! TATCATCACCAAATTTAAAT+TGG - chr3_4:64645198-64645217 Msa0514000:intron 20.0%
!! CAAATTTAAATTGGCAAATT+GGG - chr3_4:64645207-64645226 Msa0514000:intron 20.0%
!! TTTGATACAAAAAACAAGAT+GGG + chr3_4:64645547-64645566 None:intergenic 20.0%
!!! TTTTGATACAAAAAACAAGA+TGG + chr3_4:64645548-64645567 None:intergenic 20.0%
!!! ATTTGTTGTTTTTGTTCTAT+TGG - chr3_4:64645586-64645605 Msa0514000:intron 20.0%
!!! TTTGTTGTTTTTGTTCTATT+GGG - chr3_4:64645587-64645606 Msa0514000:intron 20.0%
!! AAATAGTCAACATGATATTA+TGG + chr3_4:64646207-64646226 None:intergenic 20.0%
! CCAATTTGCCAATTTAAATT+TGG + chr3_4:64645209-64645228 None:intergenic 25.0%
! CCAAATTTAAATTGGCAAAT+TGG - chr3_4:64645206-64645225 Msa0514000:intron 25.0%
!!! GTTGATTTTGATATGGTTTT+TGG + chr3_4:64645233-64645252 None:intergenic 25.0%
! AAACAGCTTATACATAAGAA+AGG + chr3_4:64645926-64645945 None:intergenic 25.0%
! TAATAAATTGTGTGACTGTT+CGG + chr3_4:64646030-64646049 None:intergenic 25.0%
! GCCGATAAAGAAAAAAAATA+TGG - chr3_4:64646131-64646150 Msa0514000:CDS 25.0%
! AATCCAAAAGAAAAAGAAAG+AGG + chr3_4:64646269-64646288 None:intergenic 25.0%
!!! TTTGATTTTCAAATTATCCC+AGG - chr3_4:64646291-64646310 Msa0514000:five_prime_UTR 25.0%
! CCAATTTGCCAATTTAAATT+TGG + chr3_4:64645209-64645228 None:intergenic 25.0%
! CCAAATTTAAATTGGCAAAT+TGG - chr3_4:64645206-64645225 Msa0514000:intron 25.0%
!!! GTTGATTTTGATATGGTTTT+TGG + chr3_4:64645233-64645252 None:intergenic 25.0%
! AAACAGCTTATACATAAGAA+AGG + chr3_4:64645926-64645945 None:intergenic 25.0%
! TAATAAATTGTGTGACTGTT+CGG + chr3_4:64646030-64646049 None:intergenic 25.0%
! GCCGATAAAGAAAAAAAATA+TGG - chr3_4:64646131-64646150 Msa0514000:CDS 25.0%
! AATCCAAAAGAAAAAGAAAG+AGG + chr3_4:64646269-64646288 None:intergenic 25.0%
!!! TTTGATTTTCAAATTATCCC+AGG - chr3_4:64646291-64646310 Msa0514000:five_prime_UTR 25.0%
! AGGTTCATTTAAGATGTGTT+GGG + chr3_4:64645039-64645058 None:intergenic 30.0%
! TAGGTTCATTTAAGATGTGT+TGG + chr3_4:64645040-64645059 None:intergenic 30.0%
TCTTAAATGAACCTATAGAG+TGG - chr3_4:64645045-64645064 Msa0514000:CDS 30.0%
! ATCTTTCAAATGGCTCTATA+TGG - chr3_4:64645170-64645189 Msa0514000:intron 30.0%
!! AGAAGAGGTTGATTTTGATA+TGG + chr3_4:64645240-64645259 None:intergenic 30.0%
ATATGAGTTCATAGAAGAAG+AGG + chr3_4:64645255-64645274 None:intergenic 30.0%
!! ATTTTCTAGTAGCGTTTCAA+TGG - chr3_4:64645292-64645311 Msa0514000:intron 30.0%
!! TTTTCTAGTAGCGTTTCAAT+GGG - chr3_4:64645293-64645312 Msa0514000:intron 30.0%
! AATTGAGTCTTGTCTTCTAA+TGG - chr3_4:64645649-64645668 Msa0514000:intron 30.0%
GTTGATTGTAATCACATATG+TGG - chr3_4:64645752-64645771 Msa0514000:intron 30.0%
ATGTGTTCTTTATGCATGAA+AGG - chr3_4:64645889-64645908 Msa0514000:CDS 30.0%
!! AAACTATCGAAGAGTGTTTA+TGG - chr3_4:64645950-64645969 Msa0514000:CDS 30.0%
!!! TTTTTTTTCTTTATCGGCAC+AGG + chr3_4:64646129-64646148 None:intergenic 30.0%
! AGGTTCATTTAAGATGTGTT+GGG + chr3_4:64645039-64645058 None:intergenic 30.0%
! TAGGTTCATTTAAGATGTGT+TGG + chr3_4:64645040-64645059 None:intergenic 30.0%
TCTTAAATGAACCTATAGAG+TGG - chr3_4:64645045-64645064 Msa0514000:CDS 30.0%
! ATCTTTCAAATGGCTCTATA+TGG - chr3_4:64645170-64645189 Msa0514000:intron 30.0%
!! AGAAGAGGTTGATTTTGATA+TGG + chr3_4:64645240-64645259 None:intergenic 30.0%
ATATGAGTTCATAGAAGAAG+AGG + chr3_4:64645255-64645274 None:intergenic 30.0%
!! ATTTTCTAGTAGCGTTTCAA+TGG - chr3_4:64645292-64645311 Msa0514000:intron 30.0%
!! TTTTCTAGTAGCGTTTCAAT+GGG - chr3_4:64645293-64645312 Msa0514000:intron 30.0%
! AATTGAGTCTTGTCTTCTAA+TGG - chr3_4:64645649-64645668 Msa0514000:intron 30.0%
GTTGATTGTAATCACATATG+TGG - chr3_4:64645752-64645771 Msa0514000:intron 30.0%
ATGTGTTCTTTATGCATGAA+AGG - chr3_4:64645889-64645908 Msa0514000:CDS 30.0%
!! AAACTATCGAAGAGTGTTTA+TGG - chr3_4:64645950-64645969 Msa0514000:CDS 30.0%
!!! TTTTTTTTCTTTATCGGCAC+AGG + chr3_4:64646129-64646148 None:intergenic 30.0%
! GGTTCATTTAAGATGTGTTG+GGG + chr3_4:64645038-64645057 None:intergenic 35.0%
! AAGAAATGAAGACTAGTTGG+TGG + chr3_4:64645084-64645103 None:intergenic 35.0%
GAGAAGAAATGAAGACTAGT+TGG + chr3_4:64645087-64645106 None:intergenic 35.0%
AGAGTAATGGCAATTGATGA+TGG + chr3_4:64645120-64645139 None:intergenic 35.0%
! TTTCAATGGGTCTTAACTTG+AGG - chr3_4:64645306-64645325 Msa0514000:intron 35.0%
TCAATGCAAACAACCTTCAA+AGG + chr3_4:64645395-64645414 None:intergenic 35.0%
TTAACAGTATCATCAAGCTC+AGG + chr3_4:64645428-64645447 None:intergenic 35.0%
ACAACCTTCAAAGGTTTAGT+AGG + chr3_4:64645500-64645519 None:intergenic 35.0%
ATAAAGCCTTCACTCATTGT+TGG + chr3_4:64646091-64646110 None:intergenic 35.0%
! TGGCCTCTTTCTTTTTCTTT+TGG - chr3_4:64646263-64646282 Msa0514000:five_prime_UTR 35.0%
! TTTTCAAATTATCCCAGGAC+TGG - chr3_4:64646296-64646315 Msa0514000:five_prime_UTR 35.0%
! CTTGTCAACTGCAAAGTATT+TGG - chr3_4:64646323-64646342 Msa0514000:five_prime_UTR 35.0%
! GGTTCATTTAAGATGTGTTG+GGG + chr3_4:64645038-64645057 None:intergenic 35.0%
! AAGAAATGAAGACTAGTTGG+TGG + chr3_4:64645084-64645103 None:intergenic 35.0%
GAGAAGAAATGAAGACTAGT+TGG + chr3_4:64645087-64645106 None:intergenic 35.0%
AGAGTAATGGCAATTGATGA+TGG + chr3_4:64645120-64645139 None:intergenic 35.0%
! TTTCAATGGGTCTTAACTTG+AGG - chr3_4:64645306-64645325 Msa0514000:intron 35.0%
TCAATGCAAACAACCTTCAA+AGG + chr3_4:64645395-64645414 None:intergenic 35.0%
TTAACAGTATCATCAAGCTC+AGG + chr3_4:64645428-64645447 None:intergenic 35.0%
ACAACCTTCAAAGGTTTAGT+AGG + chr3_4:64645500-64645519 None:intergenic 35.0%
ATAAAGCCTTCACTCATTGT+TGG + chr3_4:64646091-64646110 None:intergenic 35.0%
! TGGCCTCTTTCTTTTTCTTT+TGG - chr3_4:64646263-64646282 Msa0514000:five_prime_UTR 35.0%
! TTTTCAAATTATCCCAGGAC+TGG - chr3_4:64646296-64646315 Msa0514000:five_prime_UTR 35.0%
! CTTGTCAACTGCAAAGTATT+TGG - chr3_4:64646323-64646342 Msa0514000:five_prime_UTR 35.0%
! TCATTTAAGATGTGTTGGGG+TGG + chr3_4:64645035-64645054 None:intergenic 40.0%
!! GTAATGGCAATTGATGATGG+TGG + chr3_4:64645117-64645136 None:intergenic 40.0%
CTGCTAAGTGTAACAGGTTA+AGG - chr3_4:64645357-64645376 Msa0514000:intron 40.0%
TGTAACAGGTTAAGGAACCA+TGG - chr3_4:64645365-64645384 Msa0514000:intron 40.0%
TTCAAAGGTTTAGTAGGACG+AGG + chr3_4:64645494-64645513 None:intergenic 40.0%
TCGTCCTACTAAACCTTTGA+AGG - chr3_4:64645493-64645512 Msa0514000:intron 40.0%
CCAGCAATAACAACCTTCAA+AGG + chr3_4:64645509-64645528 None:intergenic 40.0%
! CCTTTGAAGGTTGTTATTGC+TGG - chr3_4:64645506-64645525 Msa0514000:intron 40.0%
! TGAGTCTTGTCTTCTAATGG+TGG - chr3_4:64645652-64645671 Msa0514000:intron 40.0%
!! TTCTCATCAAAAGGAGTACC+TGG + chr3_4:64645815-64645834 None:intergenic 40.0%
CACTGACACTTCTCATCAAA+AGG + chr3_4:64645824-64645843 None:intergenic 40.0%
!! AGAAGTGTCAGTGCTACAAA+GGG - chr3_4:64645831-64645850 Msa0514000:intron 40.0%
!! GAATGGGATAGGGTTGTTTT+AGG - chr3_4:64645863-64645882 Msa0514000:intron 40.0%
GTCAATCCAACAATGAGTGA+AGG - chr3_4:64646082-64646101 Msa0514000:CDS 40.0%
TAATACTTGTGTGCGAGCTT+TGG - chr3_4:64646243-64646262 Msa0514000:five_prime_UTR 40.0%
! TCATTTAAGATGTGTTGGGG+TGG + chr3_4:64645035-64645054 None:intergenic 40.0%
!! GTAATGGCAATTGATGATGG+TGG + chr3_4:64645117-64645136 None:intergenic 40.0%
CTGCTAAGTGTAACAGGTTA+AGG - chr3_4:64645357-64645376 Msa0514000:intron 40.0%
TGTAACAGGTTAAGGAACCA+TGG - chr3_4:64645365-64645384 Msa0514000:intron 40.0%
TTCAAAGGTTTAGTAGGACG+AGG + chr3_4:64645494-64645513 None:intergenic 40.0%
TCGTCCTACTAAACCTTTGA+AGG - chr3_4:64645493-64645512 Msa0514000:intron 40.0%
CCAGCAATAACAACCTTCAA+AGG + chr3_4:64645509-64645528 None:intergenic 40.0%
! CCTTTGAAGGTTGTTATTGC+TGG - chr3_4:64645506-64645525 Msa0514000:intron 40.0%
! TGAGTCTTGTCTTCTAATGG+TGG - chr3_4:64645652-64645671 Msa0514000:intron 40.0%
!! TTCTCATCAAAAGGAGTACC+TGG + chr3_4:64645815-64645834 None:intergenic 40.0%
CACTGACACTTCTCATCAAA+AGG + chr3_4:64645824-64645843 None:intergenic 40.0%
!! AGAAGTGTCAGTGCTACAAA+GGG - chr3_4:64645831-64645850 Msa0514000:intron 40.0%
!! GAATGGGATAGGGTTGTTTT+AGG - chr3_4:64645863-64645882 Msa0514000:intron 40.0%
GTCAATCCAACAATGAGTGA+AGG - chr3_4:64646082-64646101 Msa0514000:CDS 40.0%
TAATACTTGTGTGCGAGCTT+TGG - chr3_4:64646243-64646262 Msa0514000:five_prime_UTR 40.0%
AATGAACCTATAGAGTGGCG+TGG - chr3_4:64645050-64645069 Msa0514000:CDS 45.0%
CTCGTTCTGCTAAGTGTAAC+AGG - chr3_4:64645351-64645370 Msa0514000:intron 45.0%
GAACCATGGTTCTCCTTTGA+AGG - chr3_4:64645379-64645398 Msa0514000:intron 45.0%
CAACCTTCAAAGGAGAACCA+TGG + chr3_4:64645385-64645404 None:intergenic 45.0%
! AAGGTTGTTATTGCTGGTGC+AGG - chr3_4:64645512-64645531 Msa0514000:intron 45.0%
CTTCAGACACGAACACATGT+TGG - chr3_4:64645786-64645805 Msa0514000:intron 45.0%
!! GAGAAGTGTCAGTGCTACAA+AGG - chr3_4:64645830-64645849 Msa0514000:intron 45.0%
! GAAGTGTCAGTGCTACAAAG+GGG - chr3_4:64645832-64645851 Msa0514000:intron 45.0%
AAGTGTCAGTGCTACAAAGG+GGG - chr3_4:64645833-64645852 Msa0514000:intron 45.0%
ACAAAGGGGGAAAGTGAGAA+TGG - chr3_4:64645846-64645865 Msa0514000:intron 45.0%
CAAAGGGGGAAAGTGAGAAT+GGG - chr3_4:64645847-64645866 Msa0514000:intron 45.0%
GGGAAAGTGAGAATGGGATA+GGG - chr3_4:64645853-64645872 Msa0514000:intron 45.0%
! GCAAAGTATTTGGCAGATGC+TGG - chr3_4:64646333-64646352 Msa0514000:five_prime_UTR 45.0%
TGGTCACAAGCCTATATTGC+TGG - chr3_4:64646353-64646372 Msa0514000:five_prime_UTR 45.0%
TCACAAGCCTATATTGCTGG+AGG - chr3_4:64646356-64646375 Msa0514000:five_prime_UTR 45.0%
TCTCTTGCCTCCAGCAATAT+AGG + chr3_4:64646366-64646385 None:intergenic 45.0%
AATGAACCTATAGAGTGGCG+TGG - chr3_4:64645050-64645069 Msa0514000:CDS 45.0%
CTCGTTCTGCTAAGTGTAAC+AGG - chr3_4:64645351-64645370 Msa0514000:intron 45.0%
GAACCATGGTTCTCCTTTGA+AGG - chr3_4:64645379-64645398 Msa0514000:intron 45.0%
CAACCTTCAAAGGAGAACCA+TGG + chr3_4:64645385-64645404 None:intergenic 45.0%
! AAGGTTGTTATTGCTGGTGC+AGG - chr3_4:64645512-64645531 Msa0514000:intron 45.0%
CTTCAGACACGAACACATGT+TGG - chr3_4:64645786-64645805 Msa0514000:intron 45.0%
!! GAGAAGTGTCAGTGCTACAA+AGG - chr3_4:64645830-64645849 Msa0514000:intron 45.0%
! GAAGTGTCAGTGCTACAAAG+GGG - chr3_4:64645832-64645851 Msa0514000:intron 45.0%
AAGTGTCAGTGCTACAAAGG+GGG - chr3_4:64645833-64645852 Msa0514000:intron 45.0%
ACAAAGGGGGAAAGTGAGAA+TGG - chr3_4:64645846-64645865 Msa0514000:intron 45.0%
CAAAGGGGGAAAGTGAGAAT+GGG - chr3_4:64645847-64645866 Msa0514000:intron 45.0%
GGGAAAGTGAGAATGGGATA+GGG - chr3_4:64645853-64645872 Msa0514000:intron 45.0%
! GCAAAGTATTTGGCAGATGC+TGG - chr3_4:64646333-64646352 Msa0514000:five_prime_UTR 45.0%
TGGTCACAAGCCTATATTGC+TGG - chr3_4:64646353-64646372 Msa0514000:five_prime_UTR 45.0%
TCACAAGCCTATATTGCTGG+AGG - chr3_4:64646356-64646375 Msa0514000:five_prime_UTR 45.0%
TCTCTTGCCTCCAGCAATAT+AGG + chr3_4:64646366-64646385 None:intergenic 45.0%
GTATCATCAAGCTCAGGACG+TGG + chr3_4:64645422-64645441 None:intergenic 50.0%
CGACACTGACACGTTGACAT+CGG - chr3_4:64645705-64645724 Msa0514000:intron 50.0%
ACGAACACATGTTGGACACC+AGG - chr3_4:64645794-64645813 Msa0514000:intron 50.0%
GGGGAAAGTGAGAATGGGAT+AGG - chr3_4:64645852-64645871 Msa0514000:intron 50.0%
! CAAATTATCCCAGGACTGGC+TGG - chr3_4:64646300-64646319 Msa0514000:five_prime_UTR 50.0%
CTGGAGGCAAGAGATGTTCT+AGG - chr3_4:64646372-64646391 Msa0514000:five_prime_UTR 50.0%
! GAGGCAAGAGATGTTCTAGG+TGG - chr3_4:64646375-64646394 Msa0514000:five_prime_UTR 50.0%
GTATCATCAAGCTCAGGACG+TGG + chr3_4:64645422-64645441 None:intergenic 50.0%
CGACACTGACACGTTGACAT+CGG - chr3_4:64645705-64645724 Msa0514000:intron 50.0%
ACGAACACATGTTGGACACC+AGG - chr3_4:64645794-64645813 Msa0514000:intron 50.0%
GGGGAAAGTGAGAATGGGAT+AGG - chr3_4:64645852-64645871 Msa0514000:intron 50.0%
! CAAATTATCCCAGGACTGGC+TGG - chr3_4:64646300-64646319 Msa0514000:five_prime_UTR 50.0%
CTGGAGGCAAGAGATGTTCT+AGG - chr3_4:64646372-64646391 Msa0514000:five_prime_UTR 50.0%
! GAGGCAAGAGATGTTCTAGG+TGG - chr3_4:64646375-64646394 Msa0514000:five_prime_UTR 50.0%
GAACCTATAGAGTGGCGTGG+TGG - chr3_4:64645053-64645072 Msa0514000:CDS 55.0%
AAGCCACCACGCCACTCTAT+AGG + chr3_4:64645059-64645078 None:intergenic 55.0%
! AGGACGAGGAGAAGCACGAA+AGG + chr3_4:64645480-64645499 None:intergenic 55.0%
TTGACAAGCCAGCCAGTCCT+GGG + chr3_4:64646311-64646330 None:intergenic 55.0%
GAACCTATAGAGTGGCGTGG+TGG - chr3_4:64645053-64645072 Msa0514000:CDS 55.0%
AAGCCACCACGCCACTCTAT+AGG + chr3_4:64645059-64645078 None:intergenic 55.0%
! AGGACGAGGAGAAGCACGAA+AGG + chr3_4:64645480-64645499 None:intergenic 55.0%
TTGACAAGCCAGCCAGTCCT+GGG + chr3_4:64646311-64646330 None:intergenic 55.0%
GTTGACAAGCCAGCCAGTCC+TGG + chr3_4:64646312-64646331 None:intergenic 60.0%
GTTGACAAGCCAGCCAGTCC+TGG + chr3_4:64646312-64646331 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64645007 64646401 64645007 ID=Msa0514000;Name=Msa0514000
chr3_4 mRNA 64645007 64646401 64645007 ID=Msa0514000-mRNA-1;Parent=Msa0514000;Name=Msa0514000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=172|1|0.5|1|1|1|2|0|148
chr3_4 exon 64645007 64645095 64645007 ID=Msa0514000-mRNA-1:exon:16274;Parent=Msa0514000-mRNA-1
chr3_4 exon 64645875 64646401 64645875 ID=Msa0514000-mRNA-1:exon:16273;Parent=Msa0514000-mRNA-1
chr3_4 five_prime_UTR 64646230 64646401 64646230 ID=Msa0514000-mRNA-1:five_prime_utr;Parent=Msa0514000-mRNA-1
chr3_4 CDS 64645875 64646229 64645875 ID=Msa0514000-mRNA-1:cds;Parent=Msa0514000-mRNA-1
chr3_4 CDS 64645007 64645095 64645007 ID=Msa0514000-mRNA-1:cds;Parent=Msa0514000-mRNA-1
Gene Sequence

>Msa0514000

ATGGCTCTATATGGCTCTATATCATCACCAAATTTAAATTGGCAAATTGGGCCAAAAACCATATCAAAATCAACCTCTTCTTCTATGAACTCATATACAACAATTTCATTATCATTTTCTAGTAGCGTTTCAATGGGTCTTAACTTGAGGTTCAATCTTGCTTCAGCTTCAACTCGTTCTGCTAAGTGTAACAGGTTAAGGAACCATGGTTCTCCTTTGAAGGTTGTTTGCATTGATTATCCACGTCCTGAGCTTGATGATACTGTTAATTTCATTGAAGCTTCTTACTTGTCTTCTACCTTTCGTGCTTCTCCTCGTCCTACTAAACCTTTGAAGGTTGTTATTGCTGGTGCAGGACTGGCTGGCTTGTCAACTGCAAAGTATTTGGCAGATGCTGGTCACAAGCCTATATTGCTGGAGGCAAGAGATGTTCTAGGTGGAAAG

Protein sequence

>Msa0514000

MALYGSISSPNLNWQIGPKTISKSTSSSMNSYTTISLSFSSSVSMGLNLRFNLASASTRSAKCNRLRNHGSPLKVVCIDYPRPELDDTVNFIEASYLSSTFRASPRPTKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK