AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083160 MtrunA17_Chr1g0196561 90.323 341 20 1 1 328 1 341 0.0 630
Msa0083160 MtrunA17_Chr1g0196571 51.822 247 96 3 8 231 301 547 1.30e-68 224
Msa0083160 MtrunA17_Chr1g0196571 44.828 261 100 4 11 228 11 270 4.11e-57 194
Msa0083160 MtrunA17_Chr1g0196591 42.857 203 57 2 55 231 1 170 4.60e-42 145
Msa0083160 MtrunA17_Chr1g0196581 41.481 135 49 3 46 150 21 155 3.16e-23 94.7
Msa0083160 MtrunA17_Chr8g0344111 24.862 181 122 3 151 326 210 381 4.73e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083160 AT1G63900.1 67.347 343 95 3 3 328 1 343 2.91e-169 474
Msa0083160 AT1G63900.2 67.293 266 72 2 3 253 1 266 6.66e-127 364
Msa0083160 AT1G59560.1 47.564 349 149 6 3 328 1 338 1.68e-107 317
Msa0083160 AT1G59560.3 46.349 315 135 6 3 294 1 304 5.34e-88 266
Msa0083160 AT1G59560.2 47.163 282 123 5 3 261 1 279 1.56e-78 242
Msa0083160 AT1G59560.4 47.566 267 114 5 3 246 1 264 1.50e-75 233
Msa0083160 AT1G54150.1 27.072 181 116 4 151 326 212 381 3.94e-14 72.8

Find 116 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGGTTGTTGCAATTTC+TGG 0.072072 1_2:-62188499 Msa0083160:CDS
CTAATAATAGTTTGATTAAT+TGG 0.085951 1_2:+62189865 None:intergenic
ACTCTGCTTGCCCGCGTGTT+AGG 0.172828 1_2:+62189994 None:intergenic
TAGTTTGATTAATTGGAAAA+TGG 0.234519 1_2:+62189872 None:intergenic
AGGCATATTACACACAAATT+TGG 0.240221 1_2:+62186351 None:intergenic
TGACCTACTGTTGGTTCTTT+TGG 0.248154 1_2:-62185515 Msa0083160:three_prime_UTR
AATGAGTTCGTCAATTGTTT+TGG 0.273626 1_2:+62186909 None:intergenic
CCACTGAACTCGCAGCTAAT+TGG 0.286488 1_2:+62188457 None:intergenic
GTTTATCAGATGGTGCTAAA+AGG 0.287406 1_2:-62186386 Msa0083160:CDS
GCTGCTGCTCTTTGCCTTCT+CGG 0.290499 1_2:-62189643 Msa0083160:CDS
TGGAAAATGGAAAAGGAATT+AGG 0.296016 1_2:+62189885 None:intergenic
AACTTAGAAGATACCATATA+TGG 0.296476 1_2:+62185438 None:intergenic
CTCTGCTTGCCCGCGTGTTA+GGG 0.305399 1_2:+62189995 None:intergenic
ATATTCTTAAATCTGTTAAC+CGG 0.312636 1_2:-62189480 Msa0083160:CDS
GACGAACTCATTGCAAATCT+TGG 0.313400 1_2:-62186898 Msa0083160:CDS
TTGAATTGAAAACGATAAAC+AGG 0.320239 1_2:+62189751 None:intergenic
GGAGTAACATGCACCAAGTT+TGG 0.322295 1_2:+62185466 None:intergenic
GTTACTCCAATTCCCATATA+TGG 0.325828 1_2:-62185451 Msa0083160:three_prime_UTR
TGACCAGTTGTCCTCTTTGC+CGG 0.326267 1_2:-62185742 Msa0083160:CDS
GCTGCAGCTGCTAAGATATC+TGG 0.346053 1_2:-62186518 Msa0083160:CDS
AACACAATGATGCTGGTTCC+TGG 0.349181 1_2:-62188270 Msa0083160:CDS
AAGACGACGTCGCAACGAAT+TGG 0.350234 1_2:-62186709 Msa0083160:CDS
TGAATCCAACAGTAACAATT+TGG 0.363078 1_2:-62185633 Msa0083160:three_prime_UTR
AAGATACCATATATGGGAAT+TGG 0.365776 1_2:+62185445 None:intergenic
GTTGGAGCTCAGGGTGCTAC+TGG 0.381679 1_2:-62187807 Msa0083160:intron
AAGATATCTGGACAAGATAA+TGG 0.385392 1_2:-62186506 Msa0083160:CDS
TCAAATGTCTCACGTGCAAC+AGG 0.406895 1_2:+62187774 None:intergenic
TAACGAAGTTCCTTGGTATC+TGG 0.413346 1_2:-62188215 Msa0083160:intron
GATGTATCGAATAGCATGAT+TGG 0.432216 1_2:+62186737 None:intergenic
TGATTCTGTCTCAGGTGAAA+TGG 0.436278 1_2:-62186415 Msa0083160:intron
GGAAAAGGAATTAGGACAAA+AGG 0.436606 1_2:+62189893 None:intergenic
CCAAGGAACTTCGTTACTCC+TGG 0.438918 1_2:+62188222 None:intergenic
GATTAATTGGAAAATGGAAA+AGG 0.439528 1_2:+62189878 None:intergenic
CTTAGTGTTGTTGTTGAAGA+TGG 0.442369 1_2:-62189704 Msa0083160:exon
TGGAGTTAAAAGAATTGAAC+GGG 0.443028 1_2:-62187564 Msa0083160:CDS
ACGAACTCATTGCAAATCTT+GGG 0.456055 1_2:-62186897 Msa0083160:CDS
TGCGAGTTCAGTGGTTTAAG+AGG 0.458613 1_2:-62188448 Msa0083160:CDS
TCTGCTTGCCCGCGTGTTAG+GGG 0.462151 1_2:+62189996 None:intergenic
TCTCCGGCAAAGAGGACAAC+TGG 0.462158 1_2:+62185739 None:intergenic
TTTATCAGATGGTGCTAAAA+GGG 0.462624 1_2:-62186385 Msa0083160:CDS
GGAACTTCCTTGACTGTTGT+CGG 0.462916 1_2:-62187530 Msa0083160:CDS
CGTGAGACATTTGAAGAGTC+AGG 0.472588 1_2:-62187765 Msa0083160:CDS
ATGGTTCCATGGCGTGGCAT+CGG 0.473635 1_2:-62189679 Msa0083160:CDS
GTCACTTGTACGCGGAACAT+TGG 0.475799 1_2:-62187739 Msa0083160:CDS
CCGCCTTCTCTATCTGTCTC+CGG 0.478984 1_2:+62185723 None:intergenic
TGGTATAAGTGCACCTCTGC+GGG 0.485270 1_2:-62186789 Msa0083160:CDS
TGCCTTCTCGGTAGAACCAC+TGG 0.490436 1_2:-62189631 Msa0083160:CDS
ATTGACCAAATTGTTACTGT+TGG 0.490525 1_2:+62185628 None:intergenic
TCTGCGGGTTTGACAGTGTT+GGG 0.495785 1_2:-62186774 Msa0083160:CDS
AAATATTTACTATCCAAACT+TGG 0.496041 1_2:-62185479 Msa0083160:three_prime_UTR
GTTAATCAGCTGAGGGAGCT+AGG 0.497158 1_2:-62189457 Msa0083160:intron
CATTGCAAATCTTGGGAGAT+GGG 0.502814 1_2:-62186890 Msa0083160:CDS
TTTCTCAAACACAATGATGC+TGG 0.502960 1_2:-62188277 Msa0083160:CDS
AGAGACATAAAATGGCCCTT+TGG 0.504948 1_2:+62186933 None:intergenic
ACAGTCAAGGAAGTTCCAAC+TGG 0.510024 1_2:+62187536 None:intergenic
CTGCTTGCCCGCGTGTTAGG+GGG 0.510466 1_2:+62189997 None:intergenic
TCATTGCAAATCTTGGGAGA+TGG 0.515552 1_2:-62186891 Msa0083160:CDS
CTCTGCGGGTTTGACAGTGT+TGG 0.520983 1_2:-62186775 Msa0083160:CDS
GACATAAAATGGCCCTTTGG+AGG 0.521815 1_2:+62186936 None:intergenic
ACTTAGAAGATACCATATAT+GGG 0.527052 1_2:+62185439 None:intergenic
TAACGCAGAATCTTGTATCC+AGG 0.528211 1_2:+62188252 None:intergenic
CAAATCTTGGGAGATGGGCG+AGG 0.528389 1_2:-62186885 Msa0083160:intron
CGAATTCAGCGACCCTCCAA+AGG 0.530981 1_2:-62186949 Msa0083160:CDS
GGATTATCTACAAGGTCTAA+AGG 0.538007 1_2:-62187718 Msa0083160:intron
GGAGGGTCGCTGAATTCGAA+TGG 0.538766 1_2:+62186954 None:intergenic
GGATGAAGAAATATTGCCCT+TGG 0.545092 1_2:-62188515 Msa0083160:CDS
TCATGCTATTCGATACATCA+TGG 0.545815 1_2:-62186733 Msa0083160:CDS
GTTGCAATTTCTGGAAGAGC+GGG 0.547006 1_2:-62188490 Msa0083160:CDS
ATTCTGCGTTAATGCAATCC+AGG 0.550521 1_2:-62188240 Msa0083160:CDS
CCAGGAGTAACGAAGTTCCT+TGG 0.551865 1_2:-62188222 Msa0083160:CDS
TGAAGGAATTTGATGCAAGA+AGG 0.554989 1_2:+62189920 None:intergenic
TTGGAGTTAAAAGAATTGAA+CGG 0.557101 1_2:-62187565 Msa0083160:CDS
GTGTGTAATATGCCTCGAGC+AGG 0.564370 1_2:-62186343 Msa0083160:CDS
TTCCTTGACTGTTGTCGGTG+AGG 0.569124 1_2:-62187525 Msa0083160:intron
ACATAAAATGGCCCTTTGGA+GGG 0.569737 1_2:+62186937 None:intergenic
CCAGAAATTGCAACAACCAA+GGG 0.569758 1_2:+62188499 None:intergenic
TATTCTTAAATCTGTTAACC+GGG 0.572014 1_2:-62189479 Msa0083160:CDS
CAACAACCGATGCCACGCCA+TGG 0.573971 1_2:+62189673 None:intergenic
TCCAGAAATTGCAACAACCA+AGG 0.576564 1_2:+62188498 None:intergenic
TGAAGATGGCGATGGTTCCA+TGG 0.576907 1_2:-62189690 Msa0083160:exon
CAAGAAGGAAAGTGAAGGAA+AGG 0.578848 1_2:+62189935 None:intergenic
ATTGAACGGGTACTTCCAGT+TGG 0.583520 1_2:-62187551 Msa0083160:CDS
GAATTCAGCGACCCTCCAAA+GGG 0.585702 1_2:-62186948 Msa0083160:CDS
CCAATTAGCTGCGAGTTCAG+TGG 0.586654 1_2:-62188457 Msa0083160:CDS
TGTTGCAATTTCTGGAAGAG+CGG 0.586983 1_2:-62188491 Msa0083160:CDS
TTCTCGGTAGAACCACTGGC+AGG 0.588432 1_2:-62189627 Msa0083160:intron
TGCCAGTGGTTCTACCGAGA+AGG 0.589297 1_2:+62189629 None:intergenic
CTTTCAAATAAGCATCAAGA+TGG 0.591865 1_2:-62185538 Msa0083160:three_prime_UTR
CAGAATTATATTCCTGCTCG+AGG 0.598340 1_2:+62186331 None:intergenic
CATAAACTGACATAAGAATG+AGG 0.601522 1_2:-62185668 Msa0083160:three_prime_UTR
ATGGCGATGGTTCCATGGCG+TGG 0.610175 1_2:-62189685 Msa0083160:CDS
GGAACATTGGATTATCTACA+AGG 0.616721 1_2:-62187726 Msa0083160:CDS
TGATGCAAGAAGGAAAGTGA+AGG 0.617137 1_2:+62189930 None:intergenic
GCTCCCTCAGCTGATTAACC+CGG 0.620987 1_2:+62189461 None:intergenic
TACCTCACCGACAACAGTCA+AGG 0.621671 1_2:+62187523 None:intergenic
TTAGGACAAAAGGAAGGTGA+AGG 0.622553 1_2:+62189903 None:intergenic
GTATGCTCAATACTCAATGA+CGG 0.624155 1_2:+62185690 None:intergenic
TCTATCTGTCTCCGGCAAAG+AGG 0.626419 1_2:+62185731 None:intergenic
GTGGTATAAGTGCACCTCTG+CGG 0.627269 1_2:-62186790 Msa0083160:CDS
TCAAGATGGTGACCTACTGT+TGG 0.634340 1_2:-62185524 Msa0083160:three_prime_UTR
ATGCCAAAAGAACCAACAGT+AGG 0.634805 1_2:+62185512 None:intergenic
CAGGCTGCTAAAGACGATGT+CGG 0.637534 1_2:-62186979 Msa0083160:CDS
AAACTACACACCAGATACCA+AGG 0.639256 1_2:+62188205 None:intergenic
AAGGAATTAGGACAAAAGGA+AGG 0.648525 1_2:+62189897 None:intergenic
TTGCCGGAGACAGATAGAGA+AGG 0.651134 1_2:-62185726 Msa0083160:CDS
TGAATTGAAAACGATAAACA+GGG 0.654560 1_2:+62189752 None:intergenic
GTTGTTGTTGAAGATGGCGA+TGG 0.654968 1_2:-62189698 Msa0083160:exon
TAACCGGGTTAATCAGCTGA+GGG 0.655570 1_2:-62189464 Msa0083160:CDS
TTAACCGGGTTAATCAGCTG+AGG 0.666652 1_2:-62189465 Msa0083160:CDS
AGACATTTGAAGAGTCAGGT+CGG 0.672395 1_2:-62187761 Msa0083160:CDS
CAACACTGTCAAACCCGCAG+AGG 0.681657 1_2:+62186776 None:intergenic
CCGGAGACAGATAGAGAAGG+CGG 0.686463 1_2:-62185723 Msa0083160:CDS
ATGGATGACAGTTTATCAGA+TGG 0.687669 1_2:-62186396 Msa0083160:CDS
AGGTGAAAACTACCTGCCAG+TGG 0.693394 1_2:+62189615 None:intergenic
ATATCTGGACAAGATAATGG+AGG 0.703748 1_2:-62186503 Msa0083160:intron
TCAGGTCGGTCACTTGTACG+CGG 0.721899 1_2:-62187747 Msa0083160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAATTTTGTGT+AGG - chr1_2:62185917-62185936 Msa0083160:intron 10.0%
!!! TTTTTTTTAAATTTTGTGTA+GGG - chr1_2:62185918-62185937 Msa0083160:intron 10.0%
!!! TTTTTTTTTCAAATTATTAC+TGG - chr1_2:62186157-62186176 Msa0083160:intron 10.0%
!!! ATTTTTTGTTATAATCATTT+TGG - chr1_2:62186645-62186664 Msa0083160:intron 10.0%
!! AAATAATTATTTAATGTGTT+AGG - chr1_2:62187571-62187590 Msa0083160:CDS 10.0%
!!! AAGAGTTATTATTTTAAATA+AGG + chr1_2:62188416-62188435 None:intergenic 10.0%
!!! ATTGACTAAATTATTTTATT+AGG - chr1_2:62188615-62188634 Msa0083160:intron 10.0%
!! CTAATAATAGTTTGATTAAT+TGG + chr1_2:62185565-62185584 None:intergenic 15.0%
!! TAAAAAGAAAATTGTAAAAC+AGG + chr1_2:62187117-62187136 None:intergenic 15.0%
!!! TGTTTTACAATTTTCTTTTT+AGG - chr1_2:62187116-62187135 Msa0083160:intron 15.0%
!!! TTAAATATTGACTTTAAGAA+GGG + chr1_2:62187305-62187324 None:intergenic 15.0%
!!! TTTTTTGTTAATATTTTGCA+GGG + chr1_2:62187782-62187801 None:intergenic 15.0%
!!! TTTTTTTGTTAATATTTTGC+AGG + chr1_2:62187783-62187802 None:intergenic 15.0%
!! AAAATTGTTCAGATTATTAA+AGG + chr1_2:62188876-62188895 None:intergenic 15.0%
!! TAGTTTGATTAATTGGAAAA+TGG + chr1_2:62185558-62185577 None:intergenic 20.0%
!! TATGAAATGGAACAAAAAAT+AGG + chr1_2:62185844-62185863 None:intergenic 20.0%
!! ATATTCTTAAATCTGTTAAC+CGG - chr1_2:62185947-62185966 Msa0083160:intron 20.0%
!!! TAAATATTGACTTTAAGAAG+GGG + chr1_2:62187304-62187323 None:intergenic 20.0%
!!! CTTAAATATTGACTTTAAGA+AGG + chr1_2:62187306-62187325 None:intergenic 20.0%
!!! AAAAAATTGAAGCATTTAGA+CGG - chr1_2:62187797-62187816 Msa0083160:CDS 20.0%
!!! AAATTTTATTTTCAGATGCT+TGG - chr1_2:62187843-62187862 Msa0083160:intron 20.0%
!! TTACAGAATTTCATTGTAAT+TGG - chr1_2:62187979-62187998 Msa0083160:intron 20.0%
!! ATATGCTTCTATGATATATA+TGG - chr1_2:62188081-62188100 Msa0083160:intron 20.0%
!!! CTGCTTTATATTTTTATATG+AGG - chr1_2:62188310-62188329 Msa0083160:intron 20.0%
!!! GACTAAATTATTTTATTAGG+TGG - chr1_2:62188618-62188637 Msa0083160:intron 20.0%
!!! TACAATATTTAAGTTTGCAA+TGG - chr1_2:62188963-62188982 Msa0083160:intron 20.0%
!! AATGAGATATTCTATATCAA+TGG + chr1_2:62189267-62189286 None:intergenic 20.0%
!! TAAAGATCATAAGAAAGAAA+TGG + chr1_2:62189291-62189310 None:intergenic 20.0%
!! ACATCACAATATAAATCTTA+GGG + chr1_2:62189621-62189640 None:intergenic 20.0%
!! AAATATTTACTATCCAAACT+TGG - chr1_2:62189948-62189967 Msa0083160:five_prime_UTR 20.0%
! GATTAATTGGAAAATGGAAA+AGG + chr1_2:62185552-62185571 None:intergenic 25.0%
! TGAATTGAAAACGATAAACA+GGG + chr1_2:62185678-62185697 None:intergenic 25.0%
! TTGAATTGAAAACGATAAAC+AGG + chr1_2:62185679-62185698 None:intergenic 25.0%
! CATTGAACAATGTTATGAAA+TGG + chr1_2:62185857-62185876 None:intergenic 25.0%
! TATTCTTAAATCTGTTAACC+GGG - chr1_2:62185948-62185967 Msa0083160:intron 25.0%
!!! GTATTTTAAAGAAAGATTGC+CGG - chr1_2:62186321-62186340 Msa0083160:CDS 25.0%
!!! AAGTTTGTTTTGTTTTTGAG+TGG - chr1_2:62186488-62186507 Msa0083160:intron 25.0%
! GTTGTTTGACAATAATCAAT+TGG - chr1_2:62186584-62186603 Msa0083160:intron 25.0%
! CAATTCAGTAGTACATATTA+AGG + chr1_2:62186714-62186733 None:intergenic 25.0%
! ATATGTACTACTGAATTGTA+AGG - chr1_2:62186716-62186735 Msa0083160:CDS 25.0%
!! GAATAATCTCTCCTTTTATA+AGG - chr1_2:62187049-62187068 Msa0083160:intron 25.0%
! ATAAGCAACATCCTTATAAA+AGG + chr1_2:62187063-62187082 None:intergenic 25.0%
! GTGAATATATATTCTATGAG+TGG - chr1_2:62187532-62187551 Msa0083160:CDS 25.0%
! TATTTAATGTGTTAGGATGA+TGG - chr1_2:62187578-62187597 Msa0083160:intron 25.0%
! TTGGAGTTAAAAGAATTGAA+CGG - chr1_2:62187862-62187881 Msa0083160:intron 25.0%
!! GAGTTTGATAATTCATAACA+TGG + chr1_2:62188170-62188189 None:intergenic 25.0%
!!! AGAGTTGATAAATTGAATGT+AGG + chr1_2:62188344-62188363 None:intergenic 25.0%
! TACATTCAATTTATCAACTC+TGG - chr1_2:62188343-62188362 Msa0083160:intron 25.0%
! TTAGTCAATAAAAACCATGT+AGG + chr1_2:62188604-62188623 None:intergenic 25.0%
! AATTTGTCTTCCAAATTGAA+AGG + chr1_2:62188790-62188809 None:intergenic 25.0%
!! TAATCTGAACAATTTTATGC+AGG - chr1_2:62188880-62188899 Msa0083160:intron 25.0%
!! AATCTGAACAATTTTATGCA+GGG - chr1_2:62188881-62188900 Msa0083160:intron 25.0%
! GTAAAGAAAATGGATAATAG+GGG + chr1_2:62189239-62189258 None:intergenic 25.0%
! GGTAAAGAAAATGGATAATA+GGG + chr1_2:62189240-62189259 None:intergenic 25.0%
! TGGTAAAGAAAATGGATAAT+AGG + chr1_2:62189241-62189260 None:intergenic 25.0%
! ATATTCTATATCAATGGAAG+TGG + chr1_2:62189261-62189280 None:intergenic 25.0%
! GACATCACAATATAAATCTT+AGG + chr1_2:62189622-62189641 None:intergenic 25.0%
! AAGATTTATATTGTGATGTC+AGG - chr1_2:62189622-62189641 Msa0083160:intron 25.0%
! ACTTAGAAGATACCATATAT+GGG + chr1_2:62189991-62190010 None:intergenic 25.0%
! AACTTAGAAGATACCATATA+TGG + chr1_2:62189992-62190011 None:intergenic 25.0%
TGGAAAATGGAAAAGGAATT+AGG + chr1_2:62185545-62185564 None:intergenic 30.0%
AATAACATGATTCCAGTTAC+TGG - chr1_2:62186227-62186246 Msa0083160:intron 30.0%
TATGTTTGAATACCAGTAAC+TGG + chr1_2:62186242-62186261 None:intergenic 30.0%
!! TTTTTGTTTACTTTTACCGC+CGG - chr1_2:62186266-62186285 Msa0083160:intron 30.0%
AATTAAGCTACCAATTGAAC+AGG + chr1_2:62186420-62186439 None:intergenic 30.0%
TTCAGTAGTACATATTAAGG+AGG + chr1_2:62186711-62186730 None:intergenic 30.0%
! TTCCTTTTCTAACTCCAAAA+GGG + chr1_2:62187347-62187366 None:intergenic 30.0%
! TTTCCTTTTCTAACTCCAAA+AGG + chr1_2:62187348-62187367 None:intergenic 30.0%
ATTCACAAATAAACCCACTT+GGG + chr1_2:62187518-62187537 None:intergenic 30.0%
TATTCACAAATAAACCCACT+TGG + chr1_2:62187519-62187538 None:intergenic 30.0%
TGGAGTTAAAAGAATTGAAC+GGG - chr1_2:62187863-62187882 Msa0083160:intron 30.0%
! TATAGCTAGTTACTTTCTCA+AGG - chr1_2:62187946-62187965 Msa0083160:intron 30.0%
AATTGGCATTAGCAATATCA+CGG - chr1_2:62187996-62188015 Msa0083160:intron 30.0%
! TATATGGTGCAGATTTTACA+TGG - chr1_2:62188097-62188116 Msa0083160:intron 30.0%
! ATATGGTGCAGATTTTACAT+GGG - chr1_2:62188098-62188117 Msa0083160:intron 30.0%
ATTGATTACTGTTTACTCCA+AGG - chr1_2:62188134-62188153 Msa0083160:intron 30.0%
TTGATTACTGTTTACTCCAA+GGG - chr1_2:62188135-62188154 Msa0083160:intron 30.0%
AAAATATAAAGCAGTTCTCG+TGG + chr1_2:62188304-62188323 None:intergenic 30.0%
AACTCTTAAACTGTATGATC+AGG - chr1_2:62188429-62188448 Msa0083160:CDS 30.0%
! ATGAGTTCGTCAATTGTTTT+GGG + chr1_2:62188520-62188539 None:intergenic 30.0%
! AATGAGTTCGTCAATTGTTT+TGG + chr1_2:62188521-62188540 None:intergenic 30.0%
!! ATGGTATTCAGTTTTGTATC+CGG + chr1_2:62188761-62188780 None:intergenic 30.0%
! TTCAGATTATTAAAGGTGTG+AGG + chr1_2:62188869-62188888 None:intergenic 30.0%
AAGATATCTGGACAAGATAA+TGG - chr1_2:62188921-62188940 Msa0083160:intron 30.0%
! ATAATGGAGGTATATTGCAA+TGG - chr1_2:62188937-62188956 Msa0083160:intron 30.0%
GAGACAGAATCATAAATTTC+AGG + chr1_2:62189004-62189023 None:intergenic 30.0%
GAAATTTATGATTCTGTCTC+AGG - chr1_2:62189004-62189023 Msa0083160:intron 30.0%
! TTTATCAGATGGTGCTAAAA+GGG - chr1_2:62189042-62189061 Msa0083160:intron 30.0%
AGGCATATTACACACAAATT+TGG + chr1_2:62189079-62189098 None:intergenic 30.0%
CATTACAGTATGTAGATAAG+AGG + chr1_2:62189150-62189169 None:intergenic 30.0%
AATGGAAGTGGTAAAGAAAA+TGG + chr1_2:62189249-62189268 None:intergenic 30.0%
ATATTGCCATAACTGTCTAT+TGG - chr1_2:62189386-62189405 Msa0083160:intron 30.0%
ATATAGCCAATAGACAGTTA+TGG + chr1_2:62189395-62189414 None:intergenic 30.0%
TTTGAACAACTTAGTTCAAG+TGG + chr1_2:62189550-62189569 None:intergenic 30.0%
! AAATAGATAGCTCTACTAGA+GGG + chr1_2:62189575-62189594 None:intergenic 30.0%
! TCTATTTGATTTCTCATTCC+AGG - chr1_2:62189588-62189607 Msa0083160:intron 30.0%
CATAAACTGACATAAGAATG+AGG - chr1_2:62189759-62189778 Msa0083160:five_prime_UTR 30.0%
TGAATCCAACAGTAACAATT+TGG - chr1_2:62189794-62189813 Msa0083160:five_prime_UTR 30.0%
ATTGACCAAATTGTTACTGT+TGG + chr1_2:62189802-62189821 None:intergenic 30.0%
CTTTCAAATAAGCATCAAGA+TGG - chr1_2:62189889-62189908 Msa0083160:five_prime_UTR 30.0%
AAGATACCATATATGGGAAT+TGG + chr1_2:62189985-62190004 None:intergenic 30.0%
TGAAGGAATTTGATGCAAGA+AGG + chr1_2:62185510-62185529 None:intergenic 35.0%
AAGGAATTAGGACAAAAGGA+AGG + chr1_2:62185533-62185552 None:intergenic 35.0%
GGAAAAGGAATTAGGACAAA+AGG + chr1_2:62185537-62185556 None:intergenic 35.0%
! CTTAGTGTTGTTGTTGAAGA+TGG - chr1_2:62185723-62185742 Msa0083160:CDS 35.0%
GAACAAAAAATAGGCGATTG+AGG + chr1_2:62185835-62185854 None:intergenic 35.0%
!! TTTTGTTTACTTTTACCGCC+GGG - chr1_2:62186267-62186286 Msa0083160:intron 35.0%
AAGACATCAGAAATGAAACC+CGG + chr1_2:62186288-62186307 None:intergenic 35.0%
TTCATTTCTGATGTCTTGTG+TGG - chr1_2:62186291-62186310 Msa0083160:intron 35.0%
CTTTCTTCAACCAGTTTAAC+CGG + chr1_2:62186343-62186362 None:intergenic 35.0%
! CTTTGTCGATGAGATTTTTG+CGG - chr1_2:62186620-62186639 Msa0083160:intron 35.0%
ACATGCGTACAAAGATTGTA+AGG + chr1_2:62186685-62186704 None:intergenic 35.0%
TACAATCTTTGTACGCATGT+TGG - chr1_2:62186685-62186704 Msa0083160:intron 35.0%
TATGGTTAACTACCTGGTAT+TGG - chr1_2:62186811-62186830 Msa0083160:intron 35.0%
!!! TGTTTTTTCAGCACAACTGT+TGG - chr1_2:62186891-62186910 Msa0083160:CDS 35.0%
GGTTCAGTGTTAGTTGTAAA+GGG + chr1_2:62187096-62187115 None:intergenic 35.0%
AGGTTCAGTGTTAGTTGTAA+AGG + chr1_2:62187097-62187116 None:intergenic 35.0%
TTTCTCAAACACAATGATGC+TGG - chr1_2:62187150-62187169 Msa0083160:intron 35.0%
! TTTTCTACTGCAGTTGTTGT+TGG - chr1_2:62187250-62187269 Msa0083160:intron 35.0%
! TCCTTTTCTAACTCCAAAAG+GGG + chr1_2:62187346-62187365 None:intergenic 35.0%
GGAACATTGGATTATCTACA+AGG - chr1_2:62187701-62187720 Msa0083160:intron 35.0%
GGATTATCTACAAGGTCTAA+AGG - chr1_2:62187709-62187728 Msa0083160:intron 35.0%
TTATCTACAAGGTCTAAAGG+TGG - chr1_2:62187712-62187731 Msa0083160:intron 35.0%
TATCTACAAGGTCTAAAGGT+GGG - chr1_2:62187713-62187732 Msa0083160:intron 35.0%
! TTAATATTTTGCAGGGTGAG+AGG + chr1_2:62187775-62187794 None:intergenic 35.0%
!!! GTTTTGGGAGAGACATAAAA+TGG + chr1_2:62188505-62188524 None:intergenic 35.0%
ACGAACTCATTGCAAATCTT+GGG - chr1_2:62188530-62188549 Msa0083160:intron 35.0%
!! ATCGTATGTTTTTGCCTACA+TGG - chr1_2:62188587-62188606 Msa0083160:intron 35.0%
GATGTATCGAATAGCATGAT+TGG + chr1_2:62188693-62188712 None:intergenic 35.0%
TCATGCTATTCGATACATCA+TGG - chr1_2:62188694-62188713 Msa0083160:intron 35.0%
!! CCAAATTGAAAGGCATTCAA+TGG + chr1_2:62188780-62188799 None:intergenic 35.0%
CCATTGAATGCCTTTCAATT+TGG - chr1_2:62188777-62188796 Msa0083160:intron 35.0%
TAGAGTGGAATCATATGCAT+AGG + chr1_2:62188836-62188855 None:intergenic 35.0%
TGAGGTAACGTAAAATAGAG+TGG + chr1_2:62188851-62188870 None:intergenic 35.0%
! ATATCTGGACAAGATAATGG+AGG - chr1_2:62188924-62188943 Msa0083160:intron 35.0%
ATGGATGACAGTTTATCAGA+TGG - chr1_2:62189031-62189050 Msa0083160:intron 35.0%
! GTTTATCAGATGGTGCTAAA+AGG - chr1_2:62189041-62189060 Msa0083160:intron 35.0%
AGGATAAGATTGAGAGCTTA+CGG + chr1_2:62189130-62189149 None:intergenic 35.0%
! ACTGTTACTTGTATTGCATG+TGG - chr1_2:62189493-62189512 Msa0083160:intron 35.0%
!!! TTAGTTCAAGTGGTTTTAGC+AGG + chr1_2:62189540-62189559 None:intergenic 35.0%
! AATAGATAGCTCTACTAGAG+GGG + chr1_2:62189574-62189593 None:intergenic 35.0%
! CAAATAGATAGCTCTACTAG+AGG + chr1_2:62189576-62189595 None:intergenic 35.0%
AAATCTTAGGGACATATACC+TGG + chr1_2:62189609-62189628 None:intergenic 35.0%
TTATATTGTGATGTCAGGTG+TGG - chr1_2:62189627-62189646 Msa0083160:intron 35.0%
TATATTGTGATGTCAGGTGT+GGG - chr1_2:62189628-62189647 Msa0083160:CDS 35.0%
GTATGCTCAATACTCAATGA+CGG + chr1_2:62189740-62189759 None:intergenic 35.0%
GTTACTCCAATTCCCATATA+TGG - chr1_2:62189976-62189995 Msa0083160:five_prime_UTR 35.0%
CAAGAAGGAAAGTGAAGGAA+AGG + chr1_2:62185495-62185514 None:intergenic 40.0%
TGATGCAAGAAGGAAAGTGA+AGG + chr1_2:62185500-62185519 None:intergenic 40.0%
TTAGGACAAAAGGAAGGTGA+AGG + chr1_2:62185527-62185546 None:intergenic 40.0%
! AGAAAGATTGCCGGTTAAAC+TGG - chr1_2:62186330-62186349 Msa0083160:CDS 40.0%
AACAGGCAGTATCATCAACA+TGG + chr1_2:62186403-62186422 None:intergenic 40.0%
GATGATACTGCCTGTTCAAT+TGG - chr1_2:62186407-62186426 Msa0083160:intron 40.0%
!! TTTTGAGTGGTAGCTACTTG+CGG - chr1_2:62186501-62186520 Msa0083160:intron 40.0%
CGCAAAAATCTCATCGACAA+AGG + chr1_2:62186622-62186641 None:intergenic 40.0%
GATGCACTTTAGCTGTGTTA+TGG - chr1_2:62186793-62186812 Msa0083160:CDS 40.0%
CTGTGTTATGGTTAACTACC+TGG - chr1_2:62186805-62186824 Msa0083160:intron 40.0%
CATCACTACTTACCAATACC+AGG + chr1_2:62186826-62186845 None:intergenic 40.0%
TGATGCAATCTGTACTGTTG+TGG - chr1_2:62186841-62186860 Msa0083160:intron 40.0%
GTACTGTTGTGGTTTCTTTC+TGG - chr1_2:62186852-62186871 Msa0083160:intron 40.0%
! GTTTCTTTCTGGTCATGCTT+GGG - chr1_2:62186863-62186882 Msa0083160:intron 40.0%
GGATGAAGAAATATTGCCCT+TGG - chr1_2:62186912-62186931 Msa0083160:CDS 40.0%
CCAGAAATTGCAACAACCAA+GGG + chr1_2:62186931-62186950 None:intergenic 40.0%
TCCAGAAATTGCAACAACCA+AGG + chr1_2:62186932-62186951 None:intergenic 40.0%
! TGTTGCAATTTCTGGAAGAG+CGG - chr1_2:62186936-62186955 Msa0083160:CDS 40.0%
TAACGCAGAATCTTGTATCC+AGG + chr1_2:62187178-62187197 None:intergenic 40.0%
ATTCTGCGTTAATGCAATCC+AGG - chr1_2:62187187-62187206 Msa0083160:intron 40.0%
TAACGAAGTTCCTTGGTATC+TGG - chr1_2:62187212-62187231 Msa0083160:intron 40.0%
AAACTACACACCAGATACCA+AGG + chr1_2:62187225-62187244 None:intergenic 40.0%
! TGCAGTTGTTGTTGGTTATC+TGG - chr1_2:62187258-62187277 Msa0083160:intron 40.0%
!!! TCCCCTTTTGGAGTTAGAAA+AGG - chr1_2:62187342-62187361 Msa0083160:intron 40.0%
! ATTCTCTCCGGTGTCAATTT+GGG + chr1_2:62187434-62187453 None:intergenic 40.0%
ACAAATAAACCCACTTGGGT+TGG + chr1_2:62187514-62187533 None:intergenic 40.0%
!! ATGTGTTAGGATGATGGAAC+TGG - chr1_2:62187584-62187603 Msa0083160:intron 40.0%
AGACATTTGAAGAGTCAGGT+CGG - chr1_2:62187666-62187685 Msa0083160:intron 40.0%
AGCAATATCACGGAGTAGAT+AGG - chr1_2:62188006-62188025 Msa0083160:intron 40.0%
ATCACGGAGTAGATAGGTAA+TGG - chr1_2:62188012-62188031 Msa0083160:intron 40.0%
GTAATGGTGCAAGATATACC+AGG - chr1_2:62188028-62188047 Msa0083160:intron 40.0%
TGCAAGATATACCAGGTTAC+TGG - chr1_2:62188035-62188054 Msa0083160:intron 40.0%
! GTGCAGATTTTACATGGGAA+GGG - chr1_2:62188103-62188122 Msa0083160:intron 40.0%
AACATGGAGTTCATTTCCCT+TGG + chr1_2:62188154-62188173 None:intergenic 40.0%
! GTTCTCGTGGACATTTTCTT+TGG + chr1_2:62188291-62188310 None:intergenic 40.0%
ACATAAAATGGCCCTTTGGA+GGG + chr1_2:62188493-62188512 None:intergenic 40.0%
AGAGACATAAAATGGCCCTT+TGG + chr1_2:62188497-62188516 None:intergenic 40.0%
GACGAACTCATTGCAAATCT+TGG - chr1_2:62188529-62188548 Msa0083160:intron 40.0%
TCATTGCAAATCTTGGGAGA+TGG - chr1_2:62188536-62188555 Msa0083160:intron 40.0%
CATTGCAAATCTTGGGAGAT+GGG - chr1_2:62188537-62188556 Msa0083160:intron 40.0%
GTCGCAACGAATTGGAAAAA+AGG - chr1_2:62188726-62188745 Msa0083160:intron 40.0%
! GGAAAAAAGGTACACATCAC+CGG - chr1_2:62188739-62188758 Msa0083160:intron 40.0%
TGATTCTGTCTCAGGTGAAA+TGG - chr1_2:62189012-62189031 Msa0083160:intron 40.0%
CAGAATTATATTCCTGCTCG+AGG + chr1_2:62189099-62189118 None:intergenic 40.0%
GGGGCAGAGATTAACATATA+TGG + chr1_2:62189220-62189239 None:intergenic 40.0%
!!! TGACCTACTGTTGGTTCTTT+TGG - chr1_2:62189912-62189931 Msa0083160:five_prime_UTR 40.0%
ATGCCAAAAGAACCAACAGT+AGG + chr1_2:62189918-62189937 None:intergenic 40.0%
! GTTGTTGTTGAAGATGGCGA+TGG - chr1_2:62185729-62185748 Msa0083160:CDS 45.0%
TTAACCGGGTTAATCAGCTG+AGG - chr1_2:62185962-62185981 Msa0083160:intron 45.0%
TAACCGGGTTAATCAGCTGA+GGG - chr1_2:62185963-62185982 Msa0083160:intron 45.0%
CTATCGAACATCGAGCACAT+CGG + chr1_2:62186109-62186128 None:intergenic 45.0%
ACATCAGAAATGAAACCCGG+CGG + chr1_2:62186285-62186304 None:intergenic 45.0%
AGCCAGATGCAACCAACATT+TGG + chr1_2:62186527-62186546 None:intergenic 45.0%
! GGTTTCTTTCTGGTCATGCT+TGG - chr1_2:62186862-62186881 Msa0083160:intron 45.0%
CCCTTGGTTGTTGCAATTTC+TGG - chr1_2:62186928-62186947 Msa0083160:CDS 45.0%
! GTTGCAATTTCTGGAAGAGC+GGG - chr1_2:62186937-62186956 Msa0083160:CDS 45.0%
TGCGAGTTCAGTGGTTTAAG+AGG - chr1_2:62186979-62186998 Msa0083160:CDS 45.0%
!! AACACAATGATGCTGGTTCC+TGG - chr1_2:62187157-62187176 Msa0083160:intron 45.0%
! TGAACTGAACACTCCCCTTT+TGG - chr1_2:62187330-62187349 Msa0083160:intron 45.0%
! GATTCTCTCCGGTGTCAATT+TGG + chr1_2:62187435-62187454 None:intergenic 45.0%
GTCTCAAGTTCGATTCTCTC+CGG + chr1_2:62187446-62187465 None:intergenic 45.0%
TCAAATGTCTCACGTGCAAC+AGG + chr1_2:62187656-62187675 None:intergenic 45.0%
CGTGAGACATTTGAAGAGTC+AGG - chr1_2:62187662-62187681 Msa0083160:intron 45.0%
!! AAGGTGGGAGTGTTGATACT+TGG - chr1_2:62187728-62187747 Msa0083160:CDS 45.0%
ATTGAACGGGTACTTCCAGT+TGG - chr1_2:62187876-62187895 Msa0083160:intron 45.0%
ACAGTCAAGGAAGTTCCAAC+TGG + chr1_2:62187894-62187913 None:intergenic 45.0%
GGAACTTCCTTGACTGTTGT+CGG - chr1_2:62187897-62187916 Msa0083160:intron 45.0%
AGATATACCAGGTTACTGGC+TGG - chr1_2:62188039-62188058 Msa0083160:intron 45.0%
TATTGTTCCAGCCAGTAACC+TGG + chr1_2:62188049-62188068 None:intergenic 45.0%
! GGTGCAGATTTTACATGGGA+AGG - chr1_2:62188102-62188121 Msa0083160:intron 45.0%
GACATAAAATGGCCCTTTGG+AGG + chr1_2:62188494-62188513 None:intergenic 45.0%
CTGTAATGTCATGCTGTTGC+AGG - chr1_2:62189162-62189181 Msa0083160:intron 45.0%
TCAAGATGGTGACCTACTGT+TGG - chr1_2:62189903-62189922 Msa0083160:five_prime_UTR 45.0%
GGAGTAACATGCACCAAGTT+TGG + chr1_2:62189964-62189983 None:intergenic 45.0%
!! TAATAATTTGAAAAAAAAAA+TGG + chr1_2:62186156-62186175 None:intergenic 5.0%
TGAAGATGGCGATGGTTCCA+TGG - chr1_2:62185737-62185756 Msa0083160:CDS 50.0%
AGGTGAAAACTACCTGCCAG+TGG + chr1_2:62185815-62185834 None:intergenic 50.0%
GTTAATCAGCTGAGGGAGCT+AGG - chr1_2:62185970-62185989 Msa0083160:intron 50.0%
CGATGTGCTCGATGTTCGAT+AGG - chr1_2:62186107-62186126 Msa0083160:intron 50.0%
AGCTACTTGCGGCCAAATGT+TGG - chr1_2:62186512-62186531 Msa0083160:CDS 50.0%
! GGCCAAATGTTGGTTGCATC+TGG - chr1_2:62186522-62186541 Msa0083160:CDS 50.0%
CCACTGAACTCGCAGCTAAT+TGG + chr1_2:62186973-62186992 None:intergenic 50.0%
CCAATTAGCTGCGAGTTCAG+TGG - chr1_2:62186970-62186989 Msa0083160:CDS 50.0%
CCAAGGAACTTCGTTACTCC+TGG + chr1_2:62187208-62187227 None:intergenic 50.0%
CCAGGAGTAACGAAGTTCCT+TGG - chr1_2:62187205-62187224 Msa0083160:intron 50.0%
TAGCCCACCCAAATTGACAC+CGG - chr1_2:62187424-62187443 Msa0083160:intron 50.0%
! TCTCCGGTGTCAATTTGGGT+GGG + chr1_2:62187430-62187449 None:intergenic 50.0%
GAATCGAACTTGAGACCTCG+AGG - chr1_2:62187450-62187469 Msa0083160:intron 50.0%
GTCACTTGTACGCGGAACAT+TGG - chr1_2:62187688-62187707 Msa0083160:intron 50.0%
! ATTTTGCAGGGTGAGAGGCA+GGG + chr1_2:62187770-62187789 None:intergenic 50.0%
! TATTTTGCAGGGTGAGAGGC+AGG + chr1_2:62187771-62187790 None:intergenic 50.0%
TTCCTTGACTGTTGTCGGTG+AGG - chr1_2:62187902-62187921 Msa0083160:intron 50.0%
TACCTCACCGACAACAGTCA+AGG + chr1_2:62187907-62187926 None:intergenic 50.0%
CAGGCTGCTAAAGACGATGT+CGG - chr1_2:62188448-62188467 Msa0083160:CDS 50.0%
GAATTCAGCGACCCTCCAAA+GGG - chr1_2:62188479-62188498 Msa0083160:CDS 50.0%
GTGGTATAAGTGCACCTCTG+CGG - chr1_2:62188637-62188656 Msa0083160:intron 50.0%
TGGTATAAGTGCACCTCTGC+GGG - chr1_2:62188638-62188657 Msa0083160:intron 50.0%
TCTGCGGGTTTGACAGTGTT+GGG - chr1_2:62188653-62188672 Msa0083160:intron 50.0%
AAGACGACGTCGCAACGAAT+TGG - chr1_2:62188718-62188737 Msa0083160:intron 50.0%
GCTGCAGCTGCTAAGATATC+TGG - chr1_2:62188909-62188928 Msa0083160:intron 50.0%
GTGTGTAATATGCCTCGAGC+AGG - chr1_2:62189084-62189103 Msa0083160:intron 50.0%
TGACCAGTTGTCCTCTTTGC+CGG - chr1_2:62189685-62189704 Msa0083160:CDS 50.0%
TCTATCTGTCTCCGGCAAAG+AGG + chr1_2:62189699-62189718 None:intergenic 50.0%
TTGCCGGAGACAGATAGAGA+AGG - chr1_2:62189701-62189720 Msa0083160:exon 50.0%
ATGGTTCCATGGCGTGGCAT+CGG - chr1_2:62185748-62185767 Msa0083160:CDS 55.0%
GCTGCTGCTCTTTGCCTTCT+CGG - chr1_2:62185784-62185803 Msa0083160:CDS 55.0%
TGCCTTCTCGGTAGAACCAC+TGG - chr1_2:62185796-62185815 Msa0083160:intron 55.0%
! TGCCAGTGGTTCTACCGAGA+AGG + chr1_2:62185801-62185820 None:intergenic 55.0%
TTCTCGGTAGAACCACTGGC+AGG - chr1_2:62185800-62185819 Msa0083160:intron 55.0%
GCTCCCTCAGCTGATTAACC+CGG + chr1_2:62185969-62185988 None:intergenic 55.0%
! CTCTCCGGTGTCAATTTGGG+TGG + chr1_2:62187431-62187450 None:intergenic 55.0%
TCGAACTTGAGACCTCGAGG+AGG - chr1_2:62187453-62187472 Msa0083160:intron 55.0%
!! GTGGTATTGGGTTGGGACCT+GGG + chr1_2:62187487-62187506 None:intergenic 55.0%
! TGGCCTGGTGGTATTGGGTT+GGG + chr1_2:62187494-62187513 None:intergenic 55.0%
! TTGGCCTGGTGGTATTGGGT+TGG + chr1_2:62187495-62187514 None:intergenic 55.0%
!! TGGGTTGGCCTGGTGGTATT+GGG + chr1_2:62187499-62187518 None:intergenic 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG + chr1_2:62187500-62187519 None:intergenic 55.0%
!! TAAACCCACTTGGGTTGGCC+TGG + chr1_2:62187509-62187528 None:intergenic 55.0%
ACTGGTCGTGTGCGTGTAGT+TGG - chr1_2:62187602-62187621 Msa0083160:intron 55.0%
TGTGCGTGTAGTTGGAGCTC+AGG - chr1_2:62187610-62187629 Msa0083160:intron 55.0%
GTGCGTGTAGTTGGAGCTCA+GGG - chr1_2:62187611-62187630 Msa0083160:intron 55.0%
TCAGGTCGGTCACTTGTACG+CGG - chr1_2:62187680-62187699 Msa0083160:intron 55.0%
GGTGAGAGGCAGGGATTGAA+TGG + chr1_2:62187761-62187780 None:intergenic 55.0%
GGAGGGTCGCTGAATTCGAA+TGG + chr1_2:62188476-62188495 None:intergenic 55.0%
CGAATTCAGCGACCCTCCAA+AGG - chr1_2:62188478-62188497 Msa0083160:CDS 55.0%
CAAATCTTGGGAGATGGGCG+AGG - chr1_2:62188542-62188561 Msa0083160:intron 55.0%
CAACACTGTCAAACCCGCAG+AGG + chr1_2:62188654-62188673 None:intergenic 55.0%
CTCTGCGGGTTTGACAGTGT+TGG - chr1_2:62188652-62188671 Msa0083160:intron 55.0%
CATGCTGTTGCAGGAAGCAG+TGG - chr1_2:62189171-62189190 Msa0083160:intron 55.0%
TCTCCGGCAAAGAGGACAAC+TGG + chr1_2:62189691-62189710 None:intergenic 55.0%
CCGCCTTCTCTATCTGTCTC+CGG + chr1_2:62189707-62189726 None:intergenic 55.0%
CCGGAGACAGATAGAGAAGG+CGG - chr1_2:62189704-62189723 Msa0083160:exon 55.0%
AGGAGGATCCCCCTAACACG+CGG - chr1_2:62185422-62185441 Msa0083160:three_prime_UTR 60.0%
TCTGCTTGCCCGCGTGTTAG+GGG + chr1_2:62185434-62185453 None:intergenic 60.0%
CTCTGCTTGCCCGCGTGTTA+GGG + chr1_2:62185435-62185454 None:intergenic 60.0%
ACTCTGCTTGCCCGCGTGTT+AGG + chr1_2:62185436-62185455 None:intergenic 60.0%
ATGGCGATGGTTCCATGGCG+TGG - chr1_2:62185742-62185761 Msa0083160:CDS 60.0%
CAACAACCGATGCCACGCCA+TGG + chr1_2:62185757-62185776 None:intergenic 60.0%
!! GGTGGTATTGGGTTGGGACC+TGG + chr1_2:62187488-62187507 None:intergenic 60.0%
GGTCCCAACCCAATACCACC+AGG - chr1_2:62187488-62187507 Msa0083160:intron 60.0%
TACCACCAGGCCAACCCAAG+TGG - chr1_2:62187501-62187520 Msa0083160:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG - chr1_2:62187502-62187521 Msa0083160:intron 60.0%
! GTTGGAGCTCAGGGTGCTAC+TGG - chr1_2:62187620-62187639 Msa0083160:intron 60.0%
GGAGGATCCCCCTAACACGC+GGG - chr1_2:62185423-62185442 Msa0083160:three_prime_UTR 65.0%
CTGCTTGCCCGCGTGTTAGG+GGG + chr1_2:62185433-62185452 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG + chr1_2:62187468-62187487 None:intergenic 65.0%
! TCGAGGAGGAGCACACTCCC+AGG - chr1_2:62187467-62187486 Msa0083160:intron 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG + chr1_2:62187506-62187525 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62185413 62190036 62185413 ID=Msa0083160;Name=Msa0083160
chr1_2 mRNA 62185413 62190036 62185413 ID=Msa0083160-mRNA-1;Parent=Msa0083160;Name=Msa0083160-mRNA-1;_AED=0.14;_eAED=0.14;_QI=307|0.90|0.91|1|0.81|0.75|12|290|328
chr1_2 exon 62185413 62185805 62185413 ID=Msa0083160-mRNA-1:exon:20684;Parent=Msa0083160-mRNA-1
chr1_2 exon 62186321 62186423 62186321 ID=Msa0083160-mRNA-1:exon:20683;Parent=Msa0083160-mRNA-1
chr1_2 exon 62186504 62186547 62186504 ID=Msa0083160-mRNA-1:exon:20682;Parent=Msa0083160-mRNA-1
chr1_2 exon 62186702 62186812 62186702 ID=Msa0083160-mRNA-1:exon:20681;Parent=Msa0083160-mRNA-1
chr1_2 exon 62186886 62186998 62186886 ID=Msa0083160-mRNA-1:exon:20680;Parent=Msa0083160-mRNA-1
chr1_2 exon 62187526 62187591 62187526 ID=Msa0083160-mRNA-1:exon:20679;Parent=Msa0083160-mRNA-1
chr1_2 exon 62187719 62187817 62187719 ID=Msa0083160-mRNA-1:exon:20678;Parent=Msa0083160-mRNA-1
chr1_2 exon 62188216 62188311 62188216 ID=Msa0083160-mRNA-1:exon:20677;Parent=Msa0083160-mRNA-1
chr1_2 exon 62188429 62188547 62188429 ID=Msa0083160-mRNA-1:exon:20676;Parent=Msa0083160-mRNA-1
chr1_2 exon 62189458 62189510 62189458 ID=Msa0083160-mRNA-1:exon:20675;Parent=Msa0083160-mRNA-1
chr1_2 exon 62189628 62189828 62189628 ID=Msa0083160-mRNA-1:exon:20674;Parent=Msa0083160-mRNA-1
chr1_2 exon 62189851 62190036 62189851 ID=Msa0083160-mRNA-1:exon:20673;Parent=Msa0083160-mRNA-1
chr1_2 five_prime_UTR 62189851 62190036 62189851 ID=Msa0083160-mRNA-1:five_prime_utr;Parent=Msa0083160-mRNA-1
chr1_2 five_prime_UTR 62189708 62189828 62189708 ID=Msa0083160-mRNA-1:five_prime_utr;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62189628 62189707 62189628 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62189458 62189510 62189458 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62188429 62188547 62188429 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62188216 62188311 62188216 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62187719 62187817 62187719 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62187526 62187591 62187526 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62186886 62186998 62186886 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62186702 62186812 62186702 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62186504 62186547 62186504 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62186321 62186423 62186321 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 CDS 62185703 62185805 62185703 ID=Msa0083160-mRNA-1:cds;Parent=Msa0083160-mRNA-1
chr1_2 three_prime_UTR 62185413 62185702 62185413 ID=Msa0083160-mRNA-1:three_prime_utr;Parent=Msa0083160-mRNA-1
Gene Sequence

>Msa0083160

ATGGCGATGGTTCCATGGCGTGGCATCGGTTGTTGTTTGAGTGCTGCTGCTCTTTGCCTTCTCGGTAGAACCACTGGCAGGGATGTTGATATTCTTAAATCTGTTAACCGGGTTAATCAGCTGAGGGAGCTAGCACAACTGTTGGATGAAGAAATATTGCCCTTGGTTGTTGCAATTTCTGGAAGAGCGGGTTCTGAAACTCCAATTAGCTGCGAGTTCAGTGGTTTAAGAGGTGTTATACTTGAAGAAACAGCAGAGCAACATTTTCTCAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCGTTAATGCAATCCAGGAGTAACGAAGTTCCTTGGTATCTGGGTGCTACTGGTTTTGTATTGCCTGTTGCACGTGAGACATTTGAAGAGTCAGGTCGGTCACTTGTACGCGGAACATTGGATTATCTACAAGGTCTAAAGATGCTTGGAGTTAAAAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTCGGTGAGGCTGCTAAAGACGATGTCGGAACCATTCGAATTCAGCGACCCTCCAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGACGAACTCATTGCAAATCTTGGGAGATGGGCGAGGTGGTATAAGTGCACCTCTGCGGGTTTGACAGTGTTGGGTGTTTATATGATAGCCAATCATGCTATTCGATACATCATGGAAAGACGACGTCGCAACGAATTGGAAAAAAGGGTTCTCGCTGCAGCTGCTAAGATATCTGGACAAGATAATGGAGGTGAAATGGATGACAGTTTATCAGATGGTGCTAAAAGGGAACGTGCAATGCCAAATTTGTGTGTAATATGCCTCGAGCAGGAATATAATTCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAGTTGTCCTCTTTGCCGGAGACAGATAGAGAAGGCGGTAAAGACTTTCCGTCATTGA

Protein sequence

>Msa0083160

MAMVPWRGIGCCLSAAALCLLGRTTGRDVDILKSVNRVNQLRELAQLLDEEILPLVVAISGRAGSETPISCEFSGLRGVILEETAEQHFLKHNDAGSWIQDSALMQSRSNEVPWYLGATGFVLPVARETFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPSKGPFYVSPKTIDELIANLGRWARWYKCTSAGLTVLGVYMIANHAIRYIMERRRRNELEKRVLAAAAKISGQDNGGEMDDSLSDGAKRERAMPNLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIEKAVKTFRH*