AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011180 MtrunA17_Chr1g0159741 87.079 712 34 4 1 708 1 658 0.0 1261
Msa0011180 MtrunA17_Chr3g0112341 61.897 622 180 6 87 708 103 667 0.0 787
Msa0011180 MtrunA17_Chr5g0435751 58.777 638 173 9 71 706 68 617 0.0 754
Msa0011180 MtrunA17_Chr3g0130381 43.640 566 250 10 130 684 248 755 2.22e-156 472
Msa0011180 MtrunA17_Chr3g0125511 44.444 558 238 13 140 684 223 721 2.24e-155 468
Msa0011180 MtrunA17_Chr1g0183721 42.883 555 244 11 142 684 64 557 5.02e-152 454
Msa0011180 MtrunA17_Chr1g0167381 41.682 559 253 10 138 684 90 587 1.25e-151 454
Msa0011180 MtrunA17_Chr8g0384431 42.908 557 247 10 140 684 288 785 8.23e-151 458
Msa0011180 MtrunA17_Chr8g0372471 42.759 580 258 13 119 687 356 872 1.91e-150 459
Msa0011180 MtrunA17_Chr5g0437501 41.610 584 262 12 124 684 61 588 5.05e-150 449
Msa0011180 MtrunA17_Chr1g0187601 41.519 566 256 11 138 689 89 593 3.36e-147 442
Msa0011180 MtrunA17_Chr3g0113981 38.316 689 328 19 22 687 40 654 2.60e-145 439
Msa0011180 MtrunA17_Chr8g0361791 39.032 620 283 17 118 708 46 599 3.40e-134 409
Msa0011180 MtrunA17_Chr4g0055031 38.550 607 291 14 117 708 63 602 1.18e-133 407
Msa0011180 MtrunA17_Chr8g0369481 38.860 579 272 13 146 708 75 587 1.84e-131 401
Msa0011180 MtrunA17_Chr3g0092501 39.280 611 283 18 112 708 60 596 2.77e-130 398
Msa0011180 MtrunA17_Chr5g0416991 38.347 605 294 16 117 708 60 598 1.08e-129 397
Msa0011180 MtrunA17_Chr8g0388881 36.707 583 285 14 150 708 97 619 4.55e-129 396
Msa0011180 MtrunA17_Chr8g0350391 38.765 583 270 16 148 708 112 629 1.12e-126 390
Msa0011180 MtrunA17_Chr1g0171781 38.502 574 287 9 142 708 88 602 4.46e-124 382
Msa0011180 MtrunA17_Chr8g0350351 37.238 572 279 12 149 708 96 599 7.70e-120 371
Msa0011180 MtrunA17_Chr6g0472571 41.075 465 246 10 261 708 172 625 4.82e-119 370
Msa0011180 MtrunA17_Chr5g0409411 38.045 573 277 13 150 708 81 589 5.50e-119 369
Msa0011180 MtrunA17_Chr1g0203741 42.612 467 239 12 261 708 160 616 1.94e-118 369
Msa0011180 MtrunA17_Chr7g0214551 43.355 459 226 11 262 696 111 559 1.66e-117 364
Msa0011180 MtrunA17_Chr7g0246701 41.702 470 239 12 261 708 168 624 2.04e-117 366
Msa0011180 MtrunA17_Chr7g0246681 36.907 569 281 12 149 706 83 584 3.13e-116 361
Msa0011180 MtrunA17_Chr1g0155141 37.838 555 262 17 139 684 198 678 1.79e-109 347
Msa0011180 MtrunA17_Chr3g0115931 35.880 432 255 8 297 708 258 687 1.67e-86 286
Msa0011180 MtrunA17_Chr5g0426281 35.698 437 259 8 291 708 236 669 3.60e-85 282
Msa0011180 MtrunA17_Chr5g0404771 42.628 312 126 3 139 450 318 576 2.72e-77 258
Msa0011180 MtrunA17_Chr5g0404761 42.222 270 138 8 436 694 1 263 9.27e-64 213
Msa0011180 MtrunA17_Chr4g0043121 29.223 373 196 13 136 497 82 397 1.54e-40 154
Msa0011180 MtrunA17_Chr4g0043131 46.000 150 77 3 560 708 36 182 5.55e-38 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011180 AT1G77260.1 61.072 709 207 10 8 708 8 655 0.0 884
Msa0011180 AT5G06050.1 61.997 621 181 5 89 708 97 663 0.0 815
Msa0011180 AT2G39750.1 61.290 620 185 5 89 708 127 691 0.0 809
Msa0011180 AT3G51070.1 43.239 599 249 13 111 684 336 868 1.02e-155 474
Msa0011180 AT1G29470.1 42.301 591 267 10 116 694 220 748 1.86e-153 464
Msa0011180 AT1G29470.2 42.301 591 267 10 116 694 220 748 1.86e-153 464
Msa0011180 AT4G14360.1 41.930 570 258 11 127 684 63 571 3.04e-153 458
Msa0011180 AT4G14360.2 41.930 570 258 11 127 684 63 571 3.04e-153 458
Msa0011180 AT5G64030.1 43.088 557 248 9 139 684 297 795 7.23e-153 464
Msa0011180 AT3G23300.2 42.397 559 249 11 138 684 77 574 3.16e-151 453
Msa0011180 AT3G23300.1 42.397 559 249 11 138 684 77 574 3.16e-151 453
Msa0011180 AT2G34300.2 44.144 555 242 9 140 684 240 736 1.95e-150 456
Msa0011180 AT2G34300.3 44.144 555 242 9 140 684 240 736 1.95e-150 456
Msa0011180 AT2G34300.1 44.144 555 242 9 140 684 240 736 1.95e-150 456
Msa0011180 AT2G40280.1 42.238 554 248 12 139 686 79 566 2.61e-147 442
Msa0011180 AT1G04430.1 41.248 577 261 11 123 687 72 582 2.68e-146 441
Msa0011180 AT1G04430.3 41.248 577 261 11 123 687 72 582 2.68e-146 441
Msa0011180 AT1G04430.2 41.248 577 261 11 123 687 72 582 2.68e-146 441
Msa0011180 AT3G56080.1 40.998 561 256 12 150 700 114 609 6.96e-142 429
Msa0011180 AT3G51070.2 43.393 560 228 12 111 645 336 831 1.03e-141 436
Msa0011180 AT5G14430.1 40.663 573 267 10 124 684 64 575 3.49e-138 419
Msa0011180 AT5G14430.2 40.314 573 269 10 124 684 64 575 3.18e-136 414
Msa0011180 AT4G10440.1 37.110 609 288 15 125 708 77 615 3.23e-129 397
Msa0011180 AT3G56080.2 42.000 500 219 10 150 641 114 550 7.60e-129 393
Msa0011180 AT1G33170.1 37.105 601 279 17 135 708 105 633 3.16e-127 392
Msa0011180 AT4G19120.1 37.056 591 292 14 133 708 64 589 4.71e-127 390
Msa0011180 AT4G19120.2 37.056 591 292 14 133 708 64 589 4.71e-127 390
Msa0011180 AT1G31850.1 36.696 575 284 13 150 708 85 595 2.29e-123 380
Msa0011180 AT1G31850.2 36.696 575 284 13 150 708 85 595 2.29e-123 380
Msa0011180 AT1G31850.4 36.696 575 284 13 150 708 85 595 2.29e-123 380
Msa0011180 AT1G31850.3 36.696 575 284 13 150 708 85 595 2.29e-123 380
Msa0011180 AT4G18030.1 37.949 585 280 16 140 708 85 602 8.46e-122 377
Msa0011180 AT2G43200.2 40.468 556 251 18 148 687 98 589 9.72e-122 377
Msa0011180 AT2G43200.1 40.468 556 251 18 148 687 98 589 9.72e-122 377
Msa0011180 AT5G04060.1 36.380 569 296 7 146 708 88 596 5.32e-121 374
Msa0011180 AT2G45750.1 41.423 478 235 11 260 708 153 614 2.71e-120 374
Msa0011180 AT1G26850.2 43.534 464 237 11 261 708 153 607 3.32e-119 370
Msa0011180 AT1G26850.1 43.534 464 237 11 261 708 153 607 3.32e-119 370
Msa0011180 AT3G10200.1 37.434 569 284 12 150 708 81 587 2.99e-116 362
Msa0011180 AT4G00740.1 35.364 591 297 14 130 706 71 590 1.98e-115 360
Msa0011180 AT4G00740.2 35.364 591 297 14 130 706 71 590 1.98e-115 360
Msa0011180 AT4G00750.1 41.064 470 246 12 260 708 162 621 1.06e-114 359
Msa0011180 AT3G10200.2 35.702 563 284 11 150 696 81 581 3.28e-108 341
Msa0011180 AT1G19430.1 36.871 556 265 13 140 684 221 701 8.86e-108 344
Msa0011180 AT1G19430.3 36.871 556 265 13 140 684 221 701 8.86e-108 344
Msa0011180 AT4G19120.3 35.542 498 244 12 133 615 64 499 3.94e-96 306
Msa0011180 AT1G78240.1 30.100 598 328 14 138 708 144 678 5.07e-86 285
Msa0011180 AT1G78240.2 30.100 598 328 14 138 708 144 678 5.07e-86 285
Msa0011180 AT1G26850.3 41.834 349 181 9 261 594 153 494 3.98e-82 270
Msa0011180 AT2G03480.1 31.933 595 308 22 137 708 83 603 7.52e-77 258
Msa0011180 AT2G03480.2 32.095 592 300 22 137 708 83 592 1.56e-76 257
Msa0011180 AT1G13860.2 32.900 462 251 12 281 706 4 442 2.00e-74 248
Msa0011180 AT1G13860.4 29.498 617 314 19 126 706 67 598 1.21e-73 250
Msa0011180 AT1G13860.3 29.498 617 314 19 126 706 67 598 1.21e-73 250
Msa0011180 AT1G13860.1 29.498 617 314 19 126 706 67 598 1.21e-73 250
Msa0011180 AT1G13860.5 29.498 617 314 19 126 706 67 598 1.21e-73 250
Msa0011180 AT1G19430.2 32.662 447 218 11 140 575 221 595 2.13e-63 222
Msa0011180 AT2G03480.3 29.919 371 194 14 137 497 83 397 1.98e-36 142

Find 210 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGCTTTGAAGCCTTTC+TGG 0.073815 1_1:-16861150 None:intergenic
TCTTTCTTGATATCCAATTT+TGG 0.190770 1_1:-16859453 None:intergenic
GAAGAGATTGTGAAGTTAAA+TGG 0.241396 1_1:+16858609 Msa0011180:CDS
ACGACGAGTCATTGTTAAAT+TGG 0.254797 1_1:+16858460 Msa0011180:CDS
TCATGTCCATTACATTTCTT+AGG 0.259111 1_1:-16861278 None:intergenic
ACTCCCTTCATGTTTGTATA+CGG 0.274551 1_1:-16860332 None:intergenic
TTTGGAGTTGGTTGAGGAGG+AGG 0.278841 1_1:-16858339 None:intergenic
TGAGGAGGAGGAGGTGGTGG+TGG 0.282020 1_1:-16858327 None:intergenic
AAATAAAGTTTAGGCGAATT+AGG 0.288445 1_1:-16862899 None:intergenic
GGTGGATTATATACCTTGTT+TGG 0.290653 1_1:+16858578 Msa0011180:CDS
TTCACCTTTCTGACACTATA+AGG 0.307936 1_1:-16863016 None:intergenic
TGTGCATACAAATATTTAAA+TGG 0.308157 1_1:+16863169 Msa0011180:three_prime_UTR
TTAGGGCTGAATCAAAATAT+TGG 0.313043 1_1:+16861205 Msa0011180:CDS
GTTATCGATGGTGAAGTCTT+TGG 0.315373 1_1:+16858137 Msa0011180:CDS
ATGCAAGCTGGAAAATATTA+AGG 0.324121 1_1:+16862767 Msa0011180:CDS
GTTATAGGAAGCCGATTCTT+TGG 0.325060 1_1:+16858712 Msa0011180:CDS
TTCAAACCCTTGTCTTGTTT+CGG 0.325810 1_1:-16858666 None:intergenic
AGGACAAAGGTGGCCAAAAT+TGG 0.326395 1_1:+16859440 Msa0011180:CDS
GAAGCCTTTCTGGTGGTTGA+TGG 0.327531 1_1:-16861140 None:intergenic
GGTGGTATATGGAAGGGTTT+TGG 0.328613 1_1:-16858357 None:intergenic
CTATATGACCGAGGGTTAAT+AGG 0.329862 1_1:+16861639 Msa0011180:CDS
GGGCAGGTCGCTACTTTGTA+TGG 0.330357 1_1:+16860299 Msa0011180:CDS
CAATTACCTGATAACGGATA+TGG 0.330798 1_1:+16861087 Msa0011180:CDS
GGCTGTGGAGTGGCAAGTTT+TGG 0.331799 1_1:+16859772 Msa0011180:CDS
TATCGTGTAGATTCATATAT+TGG 0.336115 1_1:+16862967 Msa0011180:three_prime_UTR
TTCAACATTGGTGCGAAGTA+TGG 0.337144 1_1:-16863048 None:intergenic
GTTCAAGATGCAGAATTAAC+TGG 0.349944 1_1:+16859959 Msa0011180:CDS
TTCCTAGGCCTAAGGGTTAT+AGG 0.356024 1_1:+16858697 Msa0011180:CDS
CACAAAATCCGTATCACTAT+TGG 0.356360 1_1:-16858502 None:intergenic
TTCGCTCCATATCCGTTATC+AGG 0.361799 1_1:-16861093 None:intergenic
CAATGTTGAATCCCCACTAA+TGG 0.363906 1_1:+16863061 Msa0011180:three_prime_UTR
GGTTGAGGAGGAGGAGGTGG+TGG 0.365058 1_1:-16858330 None:intergenic
AAGGCTTCAAAGCATCAAAA+TGG 0.366390 1_1:+16861155 Msa0011180:CDS
GTTGGTTGAGGAGGAGGAGG+TGG 0.366708 1_1:-16858333 None:intergenic
GGAGTTGGTTGAGGAGGAGG+AGG 0.367606 1_1:-16858336 None:intergenic
CCTCACCTCATCTCTACTCT+TGG 0.372156 1_1:-16858736 None:intergenic
AGGTAGCAGCTATTATTCAT+AGG 0.377077 1_1:-16860553 None:intergenic
GCTCAAGGGCAAACTGAATC+TGG 0.378834 1_1:-16859858 None:intergenic
GGAGGAGGAGGTGGTGGTGG+TGG 0.383252 1_1:-16858324 None:intergenic
ATTGGCCTATTAGACGAAAA+TGG 0.386501 1_1:+16858399 Msa0011180:CDS
ATGGTTCCTGACATTGCATT+TGG 0.386848 1_1:+16859721 Msa0011180:CDS
ATGGACATGAGAGCAGGATT+TGG 0.389360 1_1:+16861291 Msa0011180:CDS
TATCCAGGCAGGAGCTCGTT+AGG 0.390239 1_1:+16861187 Msa0011180:CDS
ATAGGCCAATTCTTTCTTGT+GGG 0.393752 1_1:-16858386 None:intergenic
AAGAAGGTTATATTGCTATA+TGG 0.396981 1_1:+16860524 Msa0011180:CDS
TAATAGGTGTTATGCATGAT+TGG 0.397366 1_1:+16861655 Msa0011180:CDS
TTGTGTTGTTCCTAGGCCTA+AGG 0.398385 1_1:+16858689 Msa0011180:CDS
AATGTTGAATCCCCACTAAT+GGG 0.402802 1_1:+16863062 Msa0011180:three_prime_UTR
GAAAAGGTAAGAAGTGTGAT+AGG 0.407464 1_1:+16859203 Msa0011180:CDS
GATTTGTAAGGATGTGAAAA+TGG 0.408375 1_1:+16858557 Msa0011180:CDS
AGCCCTAACGAGCTCCTGCC+TGG 0.414773 1_1:-16861190 None:intergenic
TCATCATTGGACTCACATAA+TGG 0.417251 1_1:-16860601 None:intergenic
ATAAGGAGATCACCATGTTC+TGG 0.418519 1_1:-16862999 None:intergenic
GAAAAGGTATGAAGTGTGAT+AGG 0.419512 1_1:+16859150 Msa0011180:CDS
GGGTCATACCAAACATCATC+TGG 0.419813 1_1:-16860625 None:intergenic
GAAGGTGAGGGAAGAGATTG+TGG 0.419990 1_1:-16858265 None:intergenic
TCATAACCCAACAGTCAATC+TGG 0.424328 1_1:-16861578 None:intergenic
TGTCCTCAACCAGACGTGTA+TGG 0.424371 1_1:-16859423 None:intergenic
GGAAGAGATTGTGGTGGTGG+TGG 0.427096 1_1:-16858256 None:intergenic
GTTTGAATTGTGTTGTTCCT+AGG 0.427876 1_1:+16858682 Msa0011180:CDS
TGGTGGTTGTGGTTGACCCT+CGG 0.431191 1_1:-16858307 None:intergenic
TTGCAGGTATGTTGGTCTAA+AGG 0.431806 1_1:+16861053 Msa0011180:intron
AGAGGTTGAAGGAGAGAAGA+AGG 0.432585 1_1:-16858283 None:intergenic
AGGAAGAAAGGGAATAGAAA+AGG 0.436013 1_1:+16859134 Msa0011180:intron
AAGGTATTGAATCCGCTAAC+AGG 0.436272 1_1:-16861609 None:intergenic
TGTAGCAGATCATATGTTCT+TGG 0.436467 1_1:-16862458 None:intergenic
AACATCATCTGGATCATCAT+TGG 0.440617 1_1:-16860614 None:intergenic
ATGGAGCGAATGTTACTAAC+TGG 0.443693 1_1:+16861106 Msa0011180:CDS
GGTGGTTGTGGTTGACCCTC+GGG 0.443912 1_1:-16858306 None:intergenic
AGGAGGAGAGGGAATAGAAA+AGG 0.443946 1_1:+16859187 Msa0011180:CDS
TCGTTTGTTGTTCCCAAGCC+AGG 0.449413 1_1:+16859918 Msa0011180:CDS
ACCTGACAGCTCGCATGTGT+TGG 0.458378 1_1:+16860488 Msa0011180:CDS
CCTTGTCTTGTTTCGGACAA+TGG 0.459315 1_1:-16858659 None:intergenic
ATAAACTGTGTTCCACCTCC+TGG 0.460697 1_1:-16859493 None:intergenic
AATAGGCCAATTCTTTCTTG+TGG 0.463266 1_1:-16858387 None:intergenic
AACCCTCGGTCATATAGAAC+AGG 0.468009 1_1:-16861633 None:intergenic
CAAATCTCATTGCTCTACCT+TGG 0.468365 1_1:+16862863 Msa0011180:three_prime_UTR
TCCTTACCAAGTAGTTGCAT+TGG 0.470168 1_1:-16862810 None:intergenic
CTACTCTTGGGCCAAAGAAT+CGG 0.472990 1_1:-16858723 None:intergenic
CAATGGGATGGGTGACTACC+CGG 0.474466 1_1:+16862722 Msa0011180:CDS
GTTCTTGGGTATGTATCAAA+TGG 0.475773 1_1:-16862443 None:intergenic
GAAGAAATTGCGAAAGCAAT+GGG 0.476284 1_1:+16862706 Msa0011180:CDS
GCAACTACTTGGTAAGGATT+CGG 0.478143 1_1:+16862815 Msa0011180:three_prime_UTR
CCCAACACATGCGAGCTGTC+AGG 0.478307 1_1:-16860489 None:intergenic
GAAGAAGTATAAGATTTGTA+AGG 0.479126 1_1:+16858545 Msa0011180:CDS
CTCACCTCATCTCTACTCTT+GGG 0.482498 1_1:-16858735 None:intergenic
CTCCCTTCATGTTTGTATAC+GGG 0.486474 1_1:-16860331 None:intergenic
TGATCTCCAGATTGACTGTT+GGG 0.487218 1_1:+16861572 Msa0011180:CDS
CTGAAGCCAATGCAACTACT+TGG 0.487863 1_1:+16862804 Msa0011180:exon
ATGAATGTTGTTCCTGTTAG+CGG 0.488349 1_1:+16861597 Msa0011180:CDS
TGTAGCAAATACTGCGACTA+GGG 0.496062 1_1:-16859893 None:intergenic
CCTGACAGCTCGCATGTGTT+GGG 0.496458 1_1:+16860489 Msa0011180:CDS
GTAGCAGATCATATGTTCTT+GGG 0.497027 1_1:-16862457 None:intergenic
TTGAAGGAGAGAAGAAGGTG+AGG 0.497154 1_1:-16858278 None:intergenic
GTTTAGGCGAATTAGGTCTC+AGG 0.497543 1_1:-16862892 None:intergenic
GAGGGAAGAGATTGTGGTGG+TGG 0.499147 1_1:-16858259 None:intergenic
GTACAACCTAAGAAATGTAA+TGG 0.501389 1_1:+16861272 Msa0011180:CDS
ATGATGATCCAGATGATGTT+TGG 0.501570 1_1:+16860617 Msa0011180:CDS
TAATTCTGCATCTTGAACAA+TGG 0.503368 1_1:-16859954 None:intergenic
GAGTGAAGAGAAAGATGAGA+AGG 0.503774 1_1:-16858218 None:intergenic
TTCTCTCGCCATGTTATCGA+TGG 0.503797 1_1:+16858125 None:intergenic
GCCAATGCAACTACTTGGTA+AGG 0.504435 1_1:+16862809 Msa0011180:three_prime_UTR
GTCCTCAACCAGACGTGTAT+GGG 0.508654 1_1:-16859422 None:intergenic
TGGGAACTTGTACGGAAAGA+AGG 0.513807 1_1:+16860508 Msa0011180:CDS
CCATCATGCTCGAGATGGAT+AGG 0.515264 1_1:+16862623 Msa0011180:CDS
TGAGGTCAAATGCCTGGCTT+GGG 0.516020 1_1:-16859930 None:intergenic
TGACCCTCGGGAGAGGTTGA+AGG 0.518804 1_1:-16858294 None:intergenic
GACCTTCTCCTACATCATCC+CGG 0.520903 1_1:-16862741 None:intergenic
GCATGTGTTGGGAACTTGTA+CGG 0.522170 1_1:+16860500 Msa0011180:CDS
ATCCGTATCACTATTGGTGT+TGG 0.522574 1_1:-16858496 None:intergenic
ATCCAGGCAGGAGCTCGTTA+GGG 0.524580 1_1:+16861188 Msa0011180:CDS
TGTGCGAGCTTTCCGTTGGA+AGG 0.526888 1_1:+16861248 Msa0011180:CDS
ACAAGAGTTGCTTTAGACAT+TGG 0.529357 1_1:+16859751 Msa0011180:CDS
CTCTCCTTCAACCTCTCCCG+AGG 0.529633 1_1:+16858290 Msa0011180:CDS
ATGAGGTCAAATGCCTGGCT+TGG 0.530030 1_1:-16859931 None:intergenic
TTCCTATAACCCTTAGGCCT+AGG 0.531789 1_1:-16858699 None:intergenic
ATAACTCAATTACCTGATAA+CGG 0.532837 1_1:+16861081 Msa0011180:CDS
AATGTAATGGACATGAGAGC+AGG 0.534825 1_1:+16861285 Msa0011180:CDS
TGTGTTGTTCCTAGGCCTAA+GGG 0.536329 1_1:+16858690 Msa0011180:CDS
GACATGAGAGCAGGATTTGG+AGG 0.538036 1_1:+16861294 Msa0011180:CDS
GCGCAGCAATCTCACGACTA+AGG 0.538150 1_1:-16860573 None:intergenic
GTTGCTTTAGACATTGGCTG+TGG 0.538990 1_1:+16859757 Msa0011180:CDS
AATGGATGAGGTCAAATGCC+TGG 0.539228 1_1:-16859936 None:intergenic
AAGTTAAATGGAAGTGAAAG+AGG 0.541829 1_1:+16858621 Msa0011180:CDS
TGAAGAAATTGCGAAAGCAA+TGG 0.542671 1_1:+16862705 Msa0011180:CDS
AGTTAAATGGAAGTGAAAGA+GGG 0.542789 1_1:+16858622 Msa0011180:CDS
GGGCAGGCACACCACGCTCA+AGG 0.543659 1_1:-16859873 None:intergenic
AAATGGATGCTACTATATCC+AGG 0.545020 1_1:+16861172 Msa0011180:CDS
TAACCTCGGAAATCTGATCC+AGG 0.547056 1_1:-16859534 None:intergenic
TAATGTACCCCATACACGTC+TGG 0.547528 1_1:+16859414 Msa0011180:CDS
TTCAACCATCATGCTCGAGA+TGG 0.548044 1_1:+16862618 Msa0011180:CDS
ACCCCATACACGTCTGGTTG+AGG 0.549704 1_1:+16859420 Msa0011180:CDS
TGAAGGAGAGAAGAAGGTGA+GGG 0.551572 1_1:-16858277 None:intergenic
AGTGAAGAGAAAGATGAGAA+GGG 0.553224 1_1:-16858217 None:intergenic
GAGAAGGTCCATATGCAAGC+TGG 0.555000 1_1:+16862755 Msa0011180:CDS
GCAAATACTGCGACTAGGGC+AGG 0.555901 1_1:-16859889 None:intergenic
TATGATCTGCTACATGCAGC+AGG 0.557455 1_1:+16862467 Msa0011180:CDS
AAATTGGATATCAAGAAAGA+AGG 0.559837 1_1:+16859456 Msa0011180:CDS
TACCAACACCAATAGTGATA+CGG 0.568410 1_1:+16858494 Msa0011180:CDS
CCTATCCATCTCGAGCATGA+TGG 0.568451 1_1:-16862623 None:intergenic
TTGTAACCAAATGCAATGTC+AGG 0.568459 1_1:-16859727 None:intergenic
TAGGCCAATTCTTTCTTGTG+GGG 0.568840 1_1:-16858385 None:intergenic
GTGTAGCAAATACTGCGACT+AGG 0.569177 1_1:-16859894 None:intergenic
TTGTGGTTGACCCTCGGGAG+AGG 0.569704 1_1:-16858301 None:intergenic
ATCGGCTTCCTATAACCCTT+AGG 0.570850 1_1:-16858705 None:intergenic
GGCAGGTCGCTACTTTGTAT+GGG 0.571069 1_1:+16860300 Msa0011180:CDS
ATCTCCTTATAGTGTCAGAA+AGG 0.574261 1_1:+16863012 Msa0011180:three_prime_UTR
ACCTTCTCCTACATCATCCC+GGG 0.574370 1_1:-16862740 None:intergenic
TGTGGTGGTGGTGGTTGAAG+AGG 0.574753 1_1:-16858247 None:intergenic
ATGCTTTGAAGCCTTTCTGG+TGG 0.575024 1_1:-16861147 None:intergenic
AAGGTTATATTGCTATATGG+AGG 0.576347 1_1:+16860527 Msa0011180:CDS
AACTTTATTTCATAAAACAA+AGG 0.576756 1_1:+16862912 Msa0011180:three_prime_UTR
AGAATTAACTGGACTCGTGA+TGG 0.577262 1_1:+16859970 Msa0011180:CDS
AAGGGAGTCTTCAAGAACAA+TGG 0.578779 1_1:+16860347 Msa0011180:CDS
GTGACTACCCGGGATGATGT+AGG 0.579350 1_1:+16862733 Msa0011180:CDS
AGGCCAATTCTTTCTTGTGG+GGG 0.580933 1_1:-16858384 None:intergenic
GCCTCCATCAACCACCAGAA+AGG 0.581689 1_1:+16861136 Msa0011180:CDS
AAATTGCGAAAGCAATGGGA+TGG 0.582117 1_1:+16862710 Msa0011180:CDS
AGACTTCACCATCGATAACA+TGG 0.582211 1_1:-16858133 None:intergenic
GGCAGGCACACCACGCTCAA+GGG 0.582590 1_1:-16859872 None:intergenic
GGATGCTACTATATCCAGGC+AGG 0.582942 1_1:+16861176 Msa0011180:CDS
CATTAGTGGGGATTCAACAT+TGG 0.583173 1_1:-16863060 None:intergenic
TGCATCTTGAACAATGGATG+AGG 0.583713 1_1:-16859948 None:intergenic
ACCTGCCCTCAAAAGCCTGT+TGG 0.583890 1_1:-16860284 None:intergenic
AATGGGATGGGTGACTACCC+GGG 0.586356 1_1:+16862723 Msa0011180:CDS
TATGCTGTGAAAGGAGGAGA+GGG 0.587387 1_1:+16859176 Msa0011180:CDS
GTTAAATGGAAGTGAAAGAG+GGG 0.588431 1_1:+16858623 Msa0011180:CDS
ATTCAGTTTGCCCTTGAGCG+TGG 0.591476 1_1:+16859862 Msa0011180:CDS
GTTATGTGCGAGCTTTCCGT+TGG 0.591947 1_1:+16861244 Msa0011180:CDS
TGCCTGTTCTATATGACCGA+GGG 0.592166 1_1:+16861631 Msa0011180:CDS
TTAGGTTGTACTCCTTCCAA+CGG 0.595174 1_1:-16861260 None:intergenic
GGGTAAGGGTGGTATATGGA+AGG 0.596098 1_1:-16858364 None:intergenic
GCCTTTCTGGTGGTTGATGG+AGG 0.599818 1_1:-16861137 None:intergenic
TTGTAAGGATGTGAAAATGG+TGG 0.604859 1_1:+16858560 Msa0011180:CDS
CAGCCCGTATACAAACATGA+AGG 0.609456 1_1:+16860328 Msa0011180:CDS
CGTATATATACATAACCACC+TGG 0.616500 1_1:-16862655 None:intergenic
TCTCCTTCAACCTCTCCCGA+GGG 0.616883 1_1:+16858291 Msa0011180:CDS
ACCCGGGATGATGTAGGAGA+AGG 0.618105 1_1:+16862739 Msa0011180:CDS
GTATGCTGTGAAAGGAGGAG+AGG 0.618534 1_1:+16859175 Msa0011180:CDS
ATGATCTCCAGATTGACTGT+TGG 0.618796 1_1:+16861571 Msa0011180:CDS
TCTTCAAAATTATCCAAACA+AGG 0.620805 1_1:-16858591 None:intergenic
TTGCCTGTTCTATATGACCG+AGG 0.621033 1_1:+16861630 Msa0011180:CDS
ACATGGCGCAGATAAATACC+TGG 0.624021 1_1:+16859516 Msa0011180:CDS
AGGTTGTATGCTGTGAAAGG+AGG 0.624582 1_1:+16859170 Msa0011180:CDS
GGTGGAACACAGTTTATACA+TGG 0.625797 1_1:+16859499 Msa0011180:CDS
TGGTTCATGCAACCAGAACA+TGG 0.628732 1_1:+16862987 Msa0011180:three_prime_UTR
CCATTGTCCGAAACAAGACA+AGG 0.630051 1_1:+16858659 Msa0011180:CDS
GCATAACACCTATTAACCCT+CGG 0.630392 1_1:-16861647 None:intergenic
AGTCTTCAAGAACAATGGAA+AGG 0.635995 1_1:+16860352 Msa0011180:CDS
GGTAAGGGTGGTATATGGAA+GGG 0.637149 1_1:-16858363 None:intergenic
GGTGGTTGATGGAGGCGTGA+AGG 0.641679 1_1:-16861129 None:intergenic
ACACGTCTGGTTGAGGACAA+AGG 0.644109 1_1:+16859427 Msa0011180:CDS
ACATGAGAGCAGGATTTGGA+GGG 0.648558 1_1:+16861295 Msa0011180:CDS
AATTGCGAAAGCAATGGGAT+GGG 0.649327 1_1:+16862711 Msa0011180:CDS
TTGGCCCAAGAGTAGAGATG+AGG 0.653309 1_1:+16858731 Msa0011180:CDS
GATAGGTTGTATGCTGTGAA+AGG 0.653683 1_1:+16859167 Msa0011180:CDS
TCCTCAACCAGACGTGTATG+GGG 0.653846 1_1:-16859421 None:intergenic
TTTAGACATTGGCTGTGGAG+TGG 0.655776 1_1:+16859762 Msa0011180:CDS
AGCCCGTATACAAACATGAA+GGG 0.656046 1_1:+16860329 Msa0011180:CDS
ATGGATAGGATGCTAAGACC+AGG 0.658776 1_1:+16862637 Msa0011180:CDS
GGTGAGGGAAGAGATTGTGG+TGG 0.663276 1_1:-16858262 None:intergenic
TCGGTCATATAGAACAGGCA+AGG 0.676163 1_1:-16861628 None:intergenic
ATACCTGGATCAGATTTCCG+AGG 0.681555 1_1:+16859531 Msa0011180:CDS
TCATTGGACTCACATAATGG+AGG 0.682290 1_1:-16860598 None:intergenic
CCAAGAGTAGAGATGAGGTG+AGG 0.691185 1_1:+16858736 Msa0011180:CDS
GTGATAGGTGCAGAATCTGA+TGG 0.695539 1_1:+16859218 Msa0011180:CDS
CATTGTCCGAAACAAGACAA+GGG 0.703614 1_1:+16858660 Msa0011180:CDS
GATAGGATGCTAAGACCAGG+TGG 0.721816 1_1:+16862640 Msa0011180:CDS
CGTCTGGTTGAGGACAAAGG+TGG 0.723066 1_1:+16859430 Msa0011180:CDS
TAGGTCTCAGGAGATAACCA+AGG 0.728550 1_1:-16862880 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAATTTGGTATT+GGG - chr1_1:16860766-16860785 None:intergenic 10.0%
!!! ATTATTATAATTTAACTTTC+AGG + chr1_1:16862581-16862600 Msa0011180:intron 10.0%
!! TTCAAAATGATATCTAAATT+TGG - chr1_1:16859001-16859020 None:intergenic 15.0%
!! AATTTAAAAATCTAACACAA+TGG - chr1_1:16859650-16859669 None:intergenic 15.0%
!! TTTGATACGAAAAAAATATA+CGG - chr1_1:16860385-16860404 None:intergenic 15.0%
!! GTAAAAATAAAATTTGGTAT+TGG - chr1_1:16860767-16860786 None:intergenic 15.0%
!! CTTTCTGTAAAAATAAAATT+TGG - chr1_1:16860773-16860792 None:intergenic 15.0%
!! GTTAAAAATAGTTGTAATTA+TGG + chr1_1:16860798-16860817 Msa0011180:intron 15.0%
!! TATTGTATTTAGAAATCATA+AGG + chr1_1:16861848-16861867 Msa0011180:intron 15.0%
!!! ATAGCTTTATATTTCTTAAT+AGG + chr1_1:16862534-16862553 Msa0011180:intron 15.0%
!!! TGTTTTATGAAATAAAGTTT+AGG - chr1_1:16862911-16862930 None:intergenic 15.0%
!!! AACTTTATTTCATAAAACAA+AGG + chr1_1:16862912-16862931 Msa0011180:three_prime_UTR 15.0%
!!! ATTTTGAAATTTGTTAGTGT+AGG + chr1_1:16859013-16859032 Msa0011180:intron 20.0%
!!! TTTTGAAATTTGTTAGTGTA+GGG + chr1_1:16859014-16859033 Msa0011180:intron 20.0%
!!! TGATTCAATCTTATTTGTTT+TGG + chr1_1:16859055-16859074 Msa0011180:intron 20.0%
!!! AATCTTATTTGTTTTGGATT+TGG + chr1_1:16859061-16859080 Msa0011180:intron 20.0%
!! AAAAATCTATAGTAAAGCTA+TGG - chr1_1:16860047-16860066 None:intergenic 20.0%
!!! TACTATAGATTTTTATTTCG+TGG + chr1_1:16860053-16860072 Msa0011180:intron 20.0%
!! AACTGATTAATCATTATACT+TGG - chr1_1:16860094-16860113 None:intergenic 20.0%
!! GTGAATTGTATATTTATAAG+GGG - chr1_1:16860648-16860667 None:intergenic 20.0%
!! GGTGAATTGTATATTTATAA+GGG - chr1_1:16860649-16860668 None:intergenic 20.0%
!! AGGTGAATTGTATATTTATA+AGG - chr1_1:16860650-16860669 None:intergenic 20.0%
!! AAAAGAAATATAGGTAATGT+AGG - chr1_1:16860670-16860689 None:intergenic 20.0%
!! ATATTATGCTTCCATATAAA+AGG - chr1_1:16860824-16860843 None:intergenic 20.0%
!!! CAATCATTCTTTTTCTTTTT+GGG - chr1_1:16861476-16861495 None:intergenic 20.0%
!!! ACAATCATTCTTTTTCTTTT+TGG - chr1_1:16861477-16861496 None:intergenic 20.0%
!!! TGTTTTTATTCTGATTTGAT+TGG + chr1_1:16861709-16861728 Msa0011180:intron 20.0%
!!! AATTATCTTAGCTATCATTT+TGG + chr1_1:16861754-16861773 Msa0011180:intron 20.0%
!! GTAATAACTTAATAATGAAC+AGG + chr1_1:16861921-16861940 Msa0011180:intron 20.0%
!! TAAATTCACTAAGTTATTCA+GGG - chr1_1:16862384-16862403 None:intergenic 20.0%
!! ATAAATTCACTAAGTTATTC+AGG - chr1_1:16862385-16862404 None:intergenic 20.0%
!! TGTGCATACAAATATTTAAA+TGG + chr1_1:16863169-16863188 Msa0011180:three_prime_UTR 20.0%
!! GAAGAAGTATAAGATTTGTA+AGG + chr1_1:16858545-16858564 Msa0011180:CDS 25.0%
! TCTTCAAAATTATCCAAACA+AGG - chr1_1:16858594-16858613 None:intergenic 25.0%
! AACAAACATTCTCATTCTTA+CGG - chr1_1:16858788-16858807 None:intergenic 25.0%
!!! TTTGATCGAATTAGTTCTTT+TGG + chr1_1:16858914-16858933 Msa0011180:intron 25.0%
!!! TATGCATGTTTGTTTTTTGT+CGG + chr1_1:16858947-16858966 Msa0011180:intron 25.0%
!!! TAACTCTTTTTAGGAAGAAA+GGG + chr1_1:16859123-16859142 Msa0011180:intron 25.0%
!! TCTTTCTTGATATCCAATTT+TGG - chr1_1:16859456-16859475 None:intergenic 25.0%
! AAATTGGATATCAAGAAAGA+AGG + chr1_1:16859456-16859475 Msa0011180:CDS 25.0%
!!! AAGGATAAATTTGTTTTTCC+AGG + chr1_1:16859475-16859494 Msa0011180:CDS 25.0%
! TAAAAATCTAACACAATGGA+CGG - chr1_1:16859646-16859665 None:intergenic 25.0%
! TAAAAAGTTTAAACAGAGAG+AGG - chr1_1:16860001-16860020 None:intergenic 25.0%
! AAGAAGGTTATATTGCTATA+TGG + chr1_1:16860524-16860543 Msa0011180:CDS 25.0%
! GAACATGACAAAAGAAATAT+AGG - chr1_1:16860679-16860698 None:intergenic 25.0%
!! TGTAATTATGGCCTTTTATA+TGG + chr1_1:16860810-16860829 Msa0011180:intron 25.0%
! TGAATAGCATTGCATAAAAT+TGG - chr1_1:16860944-16860963 None:intergenic 25.0%
!! ATAACTATGAAACATTTTGC+AGG + chr1_1:16861037-16861056 Msa0011180:intron 25.0%
! ATAACTCAATTACCTGATAA+CGG + chr1_1:16861081-16861100 Msa0011180:CDS 25.0%
! TGTAAAATGATTCTGTTCAT+CGG + chr1_1:16861379-16861398 Msa0011180:intron 25.0%
!!! GAAAGAGATTAACTACTTTT+AGG + chr1_1:16862288-16862307 Msa0011180:intron 25.0%
!! ATTTAGCATCTATTTTCTGA+AGG - chr1_1:16862340-16862359 None:intergenic 25.0%
! AAATTCACTAAGTTATTCAG+GGG - chr1_1:16862383-16862402 None:intergenic 25.0%
! AAATAAAGTTTAGGCGAATT+AGG - chr1_1:16862902-16862921 None:intergenic 25.0%
! TATCGTGTAGATTCATATAT+TGG + chr1_1:16862967-16862986 Msa0011180:three_prime_UTR 25.0%
!! GTACAATCATTTTACATTGT+CGG + chr1_1:16863212-16863231 Msa0011180:three_prime_UTR 25.0%
GATTTGTAAGGATGTGAAAA+TGG + chr1_1:16858557-16858576 Msa0011180:CDS 30.0%
GAAGAGATTGTGAAGTTAAA+TGG + chr1_1:16858609-16858628 Msa0011180:CDS 30.0%
AAGTTAAATGGAAGTGAAAG+AGG + chr1_1:16858621-16858640 Msa0011180:CDS 30.0%
AGTTAAATGGAAGTGAAAGA+GGG + chr1_1:16858622-16858641 Msa0011180:CDS 30.0%
!! AGAGTGTTGACAATTTAGTT+CGG + chr1_1:16858847-16858866 Msa0011180:intron 30.0%
!! TCGAATTAGTTCTTTTGGAT+CGG + chr1_1:16858919-16858938 Msa0011180:intron 30.0%
! TAGAGTAGCTAACTCTTTTT+AGG + chr1_1:16859114-16859133 Msa0011180:intron 30.0%
!! CTAACTCTTTTTAGGAAGAA+AGG + chr1_1:16859122-16859141 Msa0011180:intron 30.0%
! TGAATGTGACACTTTTCAAT+TGG + chr1_1:16859328-16859347 Msa0011180:intron 30.0%
!! TTTTCAATTGGTTCAGACTT+CGG + chr1_1:16859340-16859359 Msa0011180:intron 30.0%
CTTATGTACAATGACAGATT+TGG + chr1_1:16859386-16859405 Msa0011180:intron 30.0%
!! GATAAATTTGTTTTTCCAGG+AGG + chr1_1:16859478-16859497 Msa0011180:CDS 30.0%
AAAAATCTAACACAATGGAC+GGG - chr1_1:16859645-16859664 None:intergenic 30.0%
TCTGAATTTGAATGTGTAGA+TGG + chr1_1:16859702-16859721 Msa0011180:intron 30.0%
! TGGTTTTCATGAACATCTTT+TGG - chr1_1:16859841-16859860 None:intergenic 30.0%
TAATTCTGCATCTTGAACAA+TGG - chr1_1:16859957-16859976 None:intergenic 30.0%
ACGAAGAGTTTAAGAAAACA+TGG + chr1_1:16860161-16860180 Msa0011180:intron 30.0%
! ACTGATATCCTGTTTTCATA+TGG + chr1_1:16860229-16860248 Msa0011180:intron 30.0%
AAGGTTATATTGCTATATGG+AGG + chr1_1:16860527-16860546 Msa0011180:CDS 30.0%
CTAACATCTTTGTCTCTTAT+TGG - chr1_1:16860729-16860748 None:intergenic 30.0%
! GGAAGCATAATATAGTAGTT+TGG + chr1_1:16860831-16860850 Msa0011180:intron 30.0%
GACATGATTCTAAACACAAA+AGG - chr1_1:16860992-16861011 None:intergenic 30.0%
TTAGGGCTGAATCAAAATAT+TGG + chr1_1:16861205-16861224 Msa0011180:CDS 30.0%
GTACAACCTAAGAAATGTAA+TGG + chr1_1:16861272-16861291 Msa0011180:CDS 30.0%
TCATGTCCATTACATTTCTT+AGG - chr1_1:16861281-16861300 None:intergenic 30.0%
TTACATCTGATAACAGTCAA+TGG - chr1_1:16861364-16861383 None:intergenic 30.0%
! AGTTTTCTGTGTGTATTATG+AGG + chr1_1:16861507-16861526 Msa0011180:intron 30.0%
! TAATAGGTGTTATGCATGAT+TGG + chr1_1:16861655-16861674 Msa0011180:CDS 30.0%
! TTTTGGCATGTGAAATTTGA+AGG + chr1_1:16861771-16861790 Msa0011180:intron 30.0%
TTTGGCATGTGAAATTTGAA+GGG + chr1_1:16861772-16861791 Msa0011180:intron 30.0%
ACTTAATAATGAACAGGTTC+TGG + chr1_1:16861927-16861946 Msa0011180:intron 30.0%
CTTAATAATGAACAGGTTCT+GGG + chr1_1:16861928-16861947 Msa0011180:intron 30.0%
ACTGATAACAGTTAAGAGTA+TGG - chr1_1:16861961-16861980 None:intergenic 30.0%
TTGTTAAATATCGACCATAG+CGG + chr1_1:16861982-16862001 Msa0011180:intron 30.0%
!! AGAGATTAACTACTTTTAGG+TGG + chr1_1:16862291-16862310 Msa0011180:intron 30.0%
TCTTCTCTGTTGAAAAAAAG+AGG + chr1_1:16862492-16862511 Msa0011180:CDS 30.0%
! AATATTTTCCAGCTTGCATA+TGG - chr1_1:16862766-16862785 None:intergenic 30.0%
ATGCAAGCTGGAAAATATTA+AGG + chr1_1:16862767-16862786 Msa0011180:CDS 30.0%
!! TTTTAGAAAACCCATTAGTG+GGG - chr1_1:16863075-16863094 None:intergenic 30.0%
!! CTTTTAGAAAACCCATTAGT+GGG - chr1_1:16863076-16863095 None:intergenic 30.0%
!! TCTTTTAGAAAACCCATTAG+TGG - chr1_1:16863077-16863096 None:intergenic 30.0%
!! GTGATGATTTTGACAGAAGA+AGG - chr1_1:16858177-16858196 None:intergenic 35.0%
AGTGAAGAGAAAGATGAGAA+GGG - chr1_1:16858220-16858239 None:intergenic 35.0%
ATAGGCCAATTCTTTCTTGT+GGG - chr1_1:16858389-16858408 None:intergenic 35.0%
AATAGGCCAATTCTTTCTTG+TGG - chr1_1:16858390-16858409 None:intergenic 35.0%
! ATTGGCCTATTAGACGAAAA+TGG + chr1_1:16858399-16858418 Msa0011180:CDS 35.0%
! TGACACCATTTTCGTCTAAT+AGG - chr1_1:16858407-16858426 None:intergenic 35.0%
ACGACGAGTCATTGTTAAAT+TGG + chr1_1:16858460-16858479 Msa0011180:CDS 35.0%
TACCAACACCAATAGTGATA+CGG + chr1_1:16858494-16858513 Msa0011180:CDS 35.0%
CACAAAATCCGTATCACTAT+TGG - chr1_1:16858505-16858524 None:intergenic 35.0%
! CAATAGTGATACGGATTTTG+TGG + chr1_1:16858503-16858522 Msa0011180:CDS 35.0%
TTGTAAGGATGTGAAAATGG+TGG + chr1_1:16858560-16858579 Msa0011180:CDS 35.0%
!! GGTGGATTATATACCTTGTT+TGG + chr1_1:16858578-16858597 Msa0011180:CDS 35.0%
GTTAAATGGAAGTGAAAGAG+GGG + chr1_1:16858623-16858642 Msa0011180:CDS 35.0%
!! TTCAAACCCTTGTCTTGTTT+CGG - chr1_1:16858669-16858688 None:intergenic 35.0%
! GTTTGAATTGTGTTGTTCCT+AGG + chr1_1:16858682-16858701 Msa0011180:CDS 35.0%
TGGTAGTTATTGTGCTTAGT+TGG + chr1_1:16859081-16859100 Msa0011180:intron 35.0%
GGTAGTTATTGTGCTTAGTT+GGG + chr1_1:16859082-16859101 Msa0011180:intron 35.0%
GTAGTTATTGTGCTTAGTTG+GGG + chr1_1:16859083-16859102 Msa0011180:intron 35.0%
AGGAAGAAAGGGAATAGAAA+AGG + chr1_1:16859134-16859153 Msa0011180:intron 35.0%
! GAAAAGGTATGAAGTGTGAT+AGG + chr1_1:16859150-16859169 Msa0011180:CDS 35.0%
! GAAAAGGTAAGAAGTGTGAT+AGG + chr1_1:16859203-16859222 Msa0011180:CDS 35.0%
!! AAATTTGTTTTTCCAGGAGG+TGG + chr1_1:16859481-16859500 Msa0011180:CDS 35.0%
AACGAATAAGAGTCTAACCT+CGG - chr1_1:16859551-16859570 None:intergenic 35.0%
TAGAGCTTATCGAAATTCTG+AGG + chr1_1:16859674-16859693 Msa0011180:intron 35.0%
TTGTAACCAAATGCAATGTC+AGG - chr1_1:16859730-16859749 None:intergenic 35.0%
! ACAAGAGTTGCTTTAGACAT+TGG + chr1_1:16859751-16859770 Msa0011180:CDS 35.0%
GTTCAAGATGCAGAATTAAC+TGG + chr1_1:16859959-16859978 Msa0011180:CDS 35.0%
TTATACTTGGCCATCAAGAA+TGG - chr1_1:16860081-16860100 None:intergenic 35.0%
CATCAAAGCCATATGAAAAC+AGG - chr1_1:16860240-16860259 None:intergenic 35.0%
!! TCATATGGCTTTGATGAAGA+TGG + chr1_1:16860244-16860263 Msa0011180:intron 35.0%
! AGATGGAATTTTACTTCTCG+AGG + chr1_1:16860261-16860280 Msa0011180:intron 35.0%
ACTCCCTTCATGTTTGTATA+CGG - chr1_1:16860335-16860354 None:intergenic 35.0%
AGTCTTCAAGAACAATGGAA+AGG + chr1_1:16860352-16860371 Msa0011180:CDS 35.0%
TCTCACTAAGTCACTATATC+AGG - chr1_1:16860418-16860437 None:intergenic 35.0%
AGGTAGCAGCTATTATTCAT+AGG - chr1_1:16860556-16860575 None:intergenic 35.0%
TCATCATTGGACTCACATAA+TGG - chr1_1:16860604-16860623 None:intergenic 35.0%
AACATCATCTGGATCATCAT+TGG - chr1_1:16860617-16860636 None:intergenic 35.0%
ATGATGATCCAGATGATGTT+TGG + chr1_1:16860617-16860636 Msa0011180:CDS 35.0%
ATGTTCATAACTGCTTGAAC+TGG + chr1_1:16860693-16860712 Msa0011180:intron 35.0%
AAGAAAGAATAGTGATGCAC+TGG - chr1_1:16860907-16860926 None:intergenic 35.0%
! GAAACATTTTGCAGGTATGT+TGG + chr1_1:16861045-16861064 Msa0011180:intron 35.0%
!! CAATTACCTGATAACGGATA+TGG + chr1_1:16861087-16861106 Msa0011180:CDS 35.0%
! AAGGCTTCAAAGCATCAAAA+TGG + chr1_1:16861155-16861174 Msa0011180:CDS 35.0%
AAATGGATGCTACTATATCC+AGG + chr1_1:16861172-16861191 Msa0011180:CDS 35.0%
AATACACACAGAAAACTGCA+AGG - chr1_1:16861504-16861523 None:intergenic 35.0%
ATGAATGTTGTTCCTGTTAG+CGG + chr1_1:16861597-16861616 Msa0011180:CDS 35.0%
!! TGAAGGGTCTTATTTGTTTC+TGG + chr1_1:16861788-16861807 Msa0011180:intron 35.0%
!!! GAACTTTTTTTTACCCTGAC+AGG + chr1_1:16862414-16862433 Msa0011180:intron 35.0%
GTTCTTGGGTATGTATCAAA+TGG - chr1_1:16862446-16862465 None:intergenic 35.0%
GTAGCAGATCATATGTTCTT+GGG - chr1_1:16862460-16862479 None:intergenic 35.0%
TGTAGCAGATCATATGTTCT+TGG - chr1_1:16862461-16862480 None:intergenic 35.0%
CGTATATATACATAACCACC+TGG - chr1_1:16862658-16862677 None:intergenic 35.0%
TGAAGAAATTGCGAAAGCAA+TGG + chr1_1:16862705-16862724 Msa0011180:CDS 35.0%
GAAGAAATTGCGAAAGCAAT+GGG + chr1_1:16862706-16862725 Msa0011180:CDS 35.0%
ATCTCCTTATAGTGTCAGAA+AGG + chr1_1:16863012-16863031 Msa0011180:three_prime_UTR 35.0%
TTCACCTTTCTGACACTATA+AGG - chr1_1:16863019-16863038 None:intergenic 35.0%
AATGTTGAATCCCCACTAAT+GGG + chr1_1:16863062-16863081 Msa0011180:three_prime_UTR 35.0%
GTTATCGATGGTGAAGTCTT+TGG + chr1_1:16858137-16858156 Msa0011180:CDS 40.0%
GAGTGAAGAGAAAGATGAGA+AGG - chr1_1:16858221-16858240 None:intergenic 40.0%
!!! ATATGGAAGGGTTTTGGAGT+TGG - chr1_1:16858354-16858373 None:intergenic 40.0%
ATTCTTTCTTGTGGGGGTAA+GGG - chr1_1:16858381-16858400 None:intergenic 40.0%
AATTCTTTCTTGTGGGGGTA+AGG - chr1_1:16858382-16858401 None:intergenic 40.0%
TTACCCCCACAAGAAAGAAT+TGG + chr1_1:16858381-16858400 Msa0011180:CDS 40.0%
TAGGCCAATTCTTTCTTGTG+GGG - chr1_1:16858388-16858407 None:intergenic 40.0%
ATCCGTATCACTATTGGTGT+TGG - chr1_1:16858499-16858518 None:intergenic 40.0%
! TAGTGATACGGATTTTGTGG+TGG + chr1_1:16858506-16858525 Msa0011180:CDS 40.0%
CATTGTCCGAAACAAGACAA+GGG + chr1_1:16858660-16858679 Msa0011180:CDS 40.0%
! GTTATAGGAAGCCGATTCTT+TGG + chr1_1:16858712-16858731 Msa0011180:CDS 40.0%
!! GGTGAGGTACTACTACTTTT+CGG + chr1_1:16858752-16858771 Msa0011180:intron 40.0%
AGAGTTAGCTACTCTAGCAT+TGG - chr1_1:16859110-16859129 None:intergenic 40.0%
GATAGGTTGTATGCTGTGAA+AGG + chr1_1:16859167-16859186 Msa0011180:CDS 40.0%
GGTGGAACACAGTTTATACA+TGG + chr1_1:16859499-16859518 Msa0011180:CDS 40.0%
CATCAGATTTGTCTACACTC+TGG + chr1_1:16859586-16859605 Msa0011180:intron 40.0%
!! GATGTGTCTTTGACTTGAGA+GGG + chr1_1:16859608-16859627 Msa0011180:intron 40.0%
ATGGTTCCTGACATTGCATT+TGG + chr1_1:16859721-16859740 Msa0011180:CDS 40.0%
!!! TTTTGGTGCTATTGAGAGAG+TGG - chr1_1:16859824-16859843 None:intergenic 40.0%
TGTAGCAAATACTGCGACTA+GGG - chr1_1:16859896-16859915 None:intergenic 40.0%
TGCATCTTGAACAATGGATG+AGG - chr1_1:16859951-16859970 None:intergenic 40.0%
AGAATTAACTGGACTCGTGA+TGG + chr1_1:16859970-16859989 Msa0011180:CDS 40.0%
TTTCGTGGATCCATTCTTGA+TGG + chr1_1:16860068-16860087 Msa0011180:intron 40.0%
AGCCCGTATACAAACATGAA+GGG + chr1_1:16860329-16860348 Msa0011180:CDS 40.0%
CTCCCTTCATGTTTGTATAC+GGG - chr1_1:16860334-16860353 None:intergenic 40.0%
AAGGGAGTCTTCAAGAACAA+TGG + chr1_1:16860347-16860366 Msa0011180:CDS 40.0%
TCATTGGACTCACATAATGG+AGG - chr1_1:16860601-16860620 None:intergenic 40.0%
! CTTTTGTCCATTGCCTATAG+AGG + chr1_1:16860867-16860886 Msa0011180:intron 40.0%
! TTGCAGGTATGTTGGTCTAA+AGG + chr1_1:16861053-16861072 Msa0011180:intron 40.0%
ATGGAGCGAATGTTACTAAC+TGG + chr1_1:16861106-16861125 Msa0011180:CDS 40.0%
!! TTGATGCTTTGAAGCCTTTC+TGG - chr1_1:16861153-16861172 None:intergenic 40.0%
! TTAGGTTGTACTCCTTCCAA+CGG - chr1_1:16861263-16861282 None:intergenic 40.0%
!! AATGTAATGGACATGAGAGC+AGG + chr1_1:16861285-16861304 Msa0011180:CDS 40.0%
! GGTAACTTCCCTTTTGACAA+TGG + chr1_1:16861528-16861547 Msa0011180:intron 40.0%
CAAACCTGCCATTGTCAAAA+GGG - chr1_1:16861539-16861558 None:intergenic 40.0%
ATGATCTCCAGATTGACTGT+TGG + chr1_1:16861571-16861590 Msa0011180:CDS 40.0%
TGATCTCCAGATTGACTGTT+GGG + chr1_1:16861572-16861591 Msa0011180:CDS 40.0%
TCATAACCCAACAGTCAATC+TGG - chr1_1:16861581-16861600 None:intergenic 40.0%
!! AAGGTATTGAATCCGCTAAC+AGG - chr1_1:16861612-16861631 None:intergenic 40.0%
CTATATGACCGAGGGTTAAT+AGG + chr1_1:16861639-16861658 Msa0011180:CDS 40.0%
GCATAACACCTATTAACCCT+CGG - chr1_1:16861650-16861669 None:intergenic 40.0%
! AGTCAAGTGCTGCAATATTC+TGG + chr1_1:16861823-16861842 Msa0011180:intron 40.0%
GCTGTCATATTGGATTATGG+CGG - chr1_1:16862081-16862100 None:intergenic 40.0%
AAATTGCGAAAGCAATGGGA+TGG + chr1_1:16862710-16862729 Msa0011180:CDS 40.0%
AATTGCGAAAGCAATGGGAT+GGG + chr1_1:16862711-16862730 Msa0011180:CDS 40.0%
TCCTTACCAAGTAGTTGCAT+TGG - chr1_1:16862813-16862832 None:intergenic 40.0%
GCAACTACTTGGTAAGGATT+CGG + chr1_1:16862815-16862834 Msa0011180:three_prime_UTR 40.0%
CAAATCTCATTGCTCTACCT+TGG + chr1_1:16862863-16862882 Msa0011180:three_prime_UTR 40.0%
ATAAGGAGATCACCATGTTC+TGG - chr1_1:16863002-16863021 None:intergenic 40.0%
TTCAACATTGGTGCGAAGTA+TGG - chr1_1:16863051-16863070 None:intergenic 40.0%
CATTAGTGGGGATTCAACAT+TGG - chr1_1:16863063-16863082 None:intergenic 40.0%
CAATGTTGAATCCCCACTAA+TGG + chr1_1:16863061-16863080 Msa0011180:three_prime_UTR 40.0%
TGAAGGAGAGAAGAAGGTGA+GGG - chr1_1:16858280-16858299 None:intergenic 45.0%
TTGAAGGAGAGAAGAAGGTG+AGG - chr1_1:16858281-16858300 None:intergenic 45.0%
AGAGGTTGAAGGAGAGAAGA+AGG - chr1_1:16858286-16858305 None:intergenic 45.0%
!!! AAGGGTTTTGGAGTTGGTTG+AGG - chr1_1:16858348-16858367 None:intergenic 45.0%
! GGTGGTATATGGAAGGGTTT+TGG - chr1_1:16858360-16858379 None:intergenic 45.0%
GGTAAGGGTGGTATATGGAA+GGG - chr1_1:16858366-16858385 None:intergenic 45.0%
AGGCCAATTCTTTCTTGTGG+GGG - chr1_1:16858387-16858406 None:intergenic 45.0%
! TGATACGGATTTTGTGGTGG+AGG + chr1_1:16858509-16858528 Msa0011180:CDS 45.0%
!! CCTTGTCTTGTTTCGGACAA+TGG - chr1_1:16858662-16858681 None:intergenic 45.0%
CCATTGTCCGAAACAAGACA+AGG + chr1_1:16858659-16858678 Msa0011180:CDS 45.0%
! TTGTGTTGTTCCTAGGCCTA+AGG + chr1_1:16858689-16858708 Msa0011180:CDS 45.0%
! TGTGTTGTTCCTAGGCCTAA+GGG + chr1_1:16858690-16858709 Msa0011180:CDS 45.0%
TTCCTAGGCCTAAGGGTTAT+AGG + chr1_1:16858697-16858716 Msa0011180:CDS 45.0%
TTCCTATAACCCTTAGGCCT+AGG - chr1_1:16858702-16858721 None:intergenic 45.0%
! ATCGGCTTCCTATAACCCTT+AGG - chr1_1:16858708-16858727 None:intergenic 45.0%
CTACTCTTGGGCCAAAGAAT+CGG - chr1_1:16858726-16858745 None:intergenic 45.0%
CTCACCTCATCTCTACTCTT+GGG - chr1_1:16858738-16858757 None:intergenic 45.0%
AGGTTGTATGCTGTGAAAGG+AGG + chr1_1:16859170-16859189 Msa0011180:CDS 45.0%
TATGCTGTGAAAGGAGGAGA+GGG + chr1_1:16859176-16859195 Msa0011180:CDS 45.0%
AGGAGGAGAGGGAATAGAAA+AGG + chr1_1:16859187-16859206 Msa0011180:CDS 45.0%
GTGATAGGTGCAGAATCTGA+TGG + chr1_1:16859218-16859237 Msa0011180:CDS 45.0%
! AATTGGTTCAGACTTCGGAC+TGG + chr1_1:16859345-16859364 Msa0011180:intron 45.0%
! ATTGGTTCAGACTTCGGACT+GGG + chr1_1:16859346-16859365 Msa0011180:intron 45.0%
TAATGTACCCCATACACGTC+TGG + chr1_1:16859414-16859433 Msa0011180:CDS 45.0%
AGGACAAAGGTGGCCAAAAT+TGG + chr1_1:16859440-16859459 Msa0011180:CDS 45.0%
ATAAACTGTGTTCCACCTCC+TGG - chr1_1:16859496-16859515 None:intergenic 45.0%
ACATGGCGCAGATAAATACC+TGG + chr1_1:16859516-16859535 Msa0011180:CDS 45.0%
ATACCTGGATCAGATTTCCG+AGG + chr1_1:16859531-16859550 Msa0011180:CDS 45.0%
TAACCTCGGAAATCTGATCC+AGG - chr1_1:16859537-16859556 None:intergenic 45.0%
!! GGATGTGTCTTTGACTTGAG+AGG + chr1_1:16859607-16859626 Msa0011180:intron 45.0%
! GTTGCTTTAGACATTGGCTG+TGG + chr1_1:16859757-16859776 Msa0011180:CDS 45.0%
! TTTAGACATTGGCTGTGGAG+TGG + chr1_1:16859762-16859781 Msa0011180:CDS 45.0%
GTGTAGCAAATACTGCGACT+AGG - chr1_1:16859897-16859916 None:intergenic 45.0%
AATGGATGAGGTCAAATGCC+TGG - chr1_1:16859939-16859958 None:intergenic 45.0%
! TTTTACTTCTCGAGGCCAAC+AGG + chr1_1:16860269-16860288 Msa0011180:CDS 45.0%
CAGCCCGTATACAAACATGA+AGG + chr1_1:16860328-16860347 Msa0011180:CDS 45.0%
GCATGTGTTGGGAACTTGTA+CGG + chr1_1:16860500-16860519 Msa0011180:CDS 45.0%
TGGGAACTTGTACGGAAAGA+AGG + chr1_1:16860508-16860527 Msa0011180:CDS 45.0%
GGGTCATACCAAACATCATC+TGG - chr1_1:16860628-16860647 None:intergenic 45.0%
GATGAAATGCAGGCCTCTAT+AGG - chr1_1:16860883-16860902 None:intergenic 45.0%
! ATGCACTGGTGATGAAATGC+AGG - chr1_1:16860893-16860912 None:intergenic 45.0%
TTCGCTCCATATCCGTTATC+AGG - chr1_1:16861096-16861115 None:intergenic 45.0%
!! ATGCTTTGAAGCCTTTCTGG+TGG - chr1_1:16861150-16861169 None:intergenic 45.0%
ATGGACATGAGAGCAGGATT+TGG + chr1_1:16861291-16861310 Msa0011180:CDS 45.0%
ACATGAGAGCAGGATTTGGA+GGG + chr1_1:16861295-16861314 Msa0011180:CDS 45.0%
GCTTAACGCTCTTGTTCCAA+GGG - chr1_1:16861454-16861473 None:intergenic 45.0%
! ACTTCCCTTTTGACAATGGC+AGG + chr1_1:16861532-16861551 Msa0011180:intron 45.0%
GCAAACCTGCCATTGTCAAA+AGG - chr1_1:16861540-16861559 None:intergenic 45.0%
TCGGTCATATAGAACAGGCA+AGG - chr1_1:16861631-16861650 None:intergenic 45.0%
TTGCCTGTTCTATATGACCG+AGG + chr1_1:16861630-16861649 Msa0011180:CDS 45.0%
TGCCTGTTCTATATGACCGA+GGG + chr1_1:16861631-16861650 Msa0011180:CDS 45.0%
AACCCTCGGTCATATAGAAC+AGG - chr1_1:16861636-16861655 None:intergenic 45.0%
!!! AGATATCGGTGGCGGATTTT+GGG + chr1_1:16862014-16862033 Msa0011180:intron 45.0%
GGCGCTGTCATATTGGATTA+TGG - chr1_1:16862084-16862103 None:intergenic 45.0%
ATAACAGTCAGCGTTGTCGA+TGG - chr1_1:16862151-16862170 None:intergenic 45.0%
TATGATCTGCTACATGCAGC+AGG + chr1_1:16862467-16862486 Msa0011180:CDS 45.0%
TTCAACCATCATGCTCGAGA+TGG + chr1_1:16862618-16862637 Msa0011180:CDS 45.0%
ATGGATAGGATGCTAAGACC+AGG + chr1_1:16862637-16862656 Msa0011180:CDS 45.0%
CTGAAGCCAATGCAACTACT+TGG + chr1_1:16862804-16862823 Msa0011180:exon 45.0%
GCCAATGCAACTACTTGGTA+AGG + chr1_1:16862809-16862828 Msa0011180:three_prime_UTR 45.0%
TAGGTCTCAGGAGATAACCA+AGG - chr1_1:16862883-16862902 None:intergenic 45.0%
GTTTAGGCGAATTAGGTCTC+AGG - chr1_1:16862895-16862914 None:intergenic 45.0%
TGGTTCATGCAACCAGAACA+TGG + chr1_1:16862987-16863006 Msa0011180:three_prime_UTR 45.0%
GAAGGTGAGGGAAGAGATTG+TGG - chr1_1:16858268-16858287 None:intergenic 50.0%
! TTTGGAGTTGGTTGAGGAGG+AGG - chr1_1:16858342-16858361 None:intergenic 50.0%
!!! GGTTTTGGAGTTGGTTGAGG+AGG - chr1_1:16858345-16858364 None:intergenic 50.0%
GGGTAAGGGTGGTATATGGA+AGG - chr1_1:16858367-16858386 None:intergenic 50.0%
!! TACGGATTTTGTGGTGGAGG+AGG + chr1_1:16858512-16858531 Msa0011180:CDS 50.0%
TTGGCCCAAGAGTAGAGATG+AGG + chr1_1:16858731-16858750 Msa0011180:CDS 50.0%
CCTCACCTCATCTCTACTCT+TGG - chr1_1:16858739-16858758 None:intergenic 50.0%
CCAAGAGTAGAGATGAGGTG+AGG + chr1_1:16858736-16858755 Msa0011180:CDS 50.0%
GTATGCTGTGAAAGGAGGAG+AGG + chr1_1:16859175-16859194 Msa0011180:CDS 50.0%
! AGACTTCGGACTGGGAAGAA+AGG + chr1_1:16859354-16859373 Msa0011180:intron 50.0%
! GACTTCGGACTGGGAAGAAA+GGG + chr1_1:16859355-16859374 Msa0011180:intron 50.0%
TCCTCAACCAGACGTGTATG+GGG - chr1_1:16859424-16859443 None:intergenic 50.0%
GTCCTCAACCAGACGTGTAT+GGG - chr1_1:16859425-16859444 None:intergenic 50.0%
TGTCCTCAACCAGACGTGTA+TGG - chr1_1:16859426-16859445 None:intergenic 50.0%
ACACGTCTGGTTGAGGACAA+AGG + chr1_1:16859427-16859446 Msa0011180:CDS 50.0%
GCTCAAGGGCAAACTGAATC+TGG - chr1_1:16859861-16859880 None:intergenic 50.0%
ATTCAGTTTGCCCTTGAGCG+TGG + chr1_1:16859862-16859881 Msa0011180:CDS 50.0%
!! TCGTTTGTTGTTCCCAAGCC+AGG + chr1_1:16859918-16859937 Msa0011180:CDS 50.0%
TGAGGTCAAATGCCTGGCTT+GGG - chr1_1:16859933-16859952 None:intergenic 50.0%
ATGAGGTCAAATGCCTGGCT+TGG - chr1_1:16859934-16859953 None:intergenic 50.0%
! GGCAGGTCGCTACTTTGTAT+GGG + chr1_1:16860300-16860319 Msa0011180:CDS 50.0%
ATGCAGGCCTCTATAGGCAA+TGG - chr1_1:16860877-16860896 None:intergenic 50.0%
! GAAGCCTTTCTGGTGGTTGA+TGG - chr1_1:16861143-16861162 None:intergenic 50.0%
GGATGCTACTATATCCAGGC+AGG + chr1_1:16861176-16861195 Msa0011180:CDS 50.0%
GTTATGTGCGAGCTTTCCGT+TGG + chr1_1:16861244-16861263 Msa0011180:CDS 50.0%
GACATGAGAGCAGGATTTGG+AGG + chr1_1:16861294-16861313 Msa0011180:CDS 50.0%
ATTTACCTCCTGCCGAACTC+CGG + chr1_1:16861411-16861430 Msa0011180:intron 50.0%
CGCTCTTGTTCCAAGGGAAA+GGG - chr1_1:16861448-16861467 None:intergenic 50.0%
ACGCTCTTGTTCCAAGGGAA+AGG - chr1_1:16861449-16861468 None:intergenic 50.0%
GGCTTAACGCTCTTGTTCCA+AGG - chr1_1:16861455-16861474 None:intergenic 50.0%
!!! CAGATATCGGTGGCGGATTT+TGG + chr1_1:16862013-16862032 Msa0011180:intron 50.0%
ATATCGGCCGAAACTGACCA+TGG - chr1_1:16862047-16862066 None:intergenic 50.0%
ATGGTCAGTTTCGGCCGATA+TGG + chr1_1:16862046-16862065 Msa0011180:intron 50.0%
TCAGTTTCGGCCGATATGGT+GGG + chr1_1:16862050-16862069 Msa0011180:intron 50.0%
GGCGGAAAATCCCACCATAT+CGG - chr1_1:16862063-16862082 None:intergenic 50.0%
TCCAATATGACAGCGCCACA+TGG + chr1_1:16862087-16862106 Msa0011180:intron 50.0%
TCCATGTGGCGCTGTCATAT+TGG - chr1_1:16862091-16862110 None:intergenic 50.0%
AATATGACAGCGCCACATGG+AGG + chr1_1:16862090-16862109 Msa0011180:intron 50.0%
ATATGACAGCGCCACATGGA+GGG + chr1_1:16862091-16862110 Msa0011180:intron 50.0%
CAAATGGCTCACACCTGTCA+GGG - chr1_1:16862430-16862449 None:intergenic 50.0%
TCAAATGGCTCACACCTGTC+AGG - chr1_1:16862431-16862450 None:intergenic 50.0%
CCTATCCATCTCGAGCATGA+TGG - chr1_1:16862626-16862645 None:intergenic 50.0%
CCATCATGCTCGAGATGGAT+AGG + chr1_1:16862623-16862642 Msa0011180:CDS 50.0%
GATAGGATGCTAAGACCAGG+TGG + chr1_1:16862640-16862659 Msa0011180:CDS 50.0%
ACCTTCTCCTACATCATCCC+GGG - chr1_1:16862743-16862762 None:intergenic 50.0%
GACCTTCTCCTACATCATCC+CGG - chr1_1:16862744-16862763 None:intergenic 50.0%
GAGAAGGTCCATATGCAAGC+TGG + chr1_1:16862755-16862774 Msa0011180:CDS 50.0%
!! TGTGGTGGTGGTGGTTGAAG+AGG - chr1_1:16858250-16858269 None:intergenic 55.0%
!! GGAAGAGATTGTGGTGGTGG+TGG - chr1_1:16858259-16858278 None:intergenic 55.0%
GAGGGAAGAGATTGTGGTGG+TGG - chr1_1:16858262-16858281 None:intergenic 55.0%
GGTGAGGGAAGAGATTGTGG+TGG - chr1_1:16858265-16858284 None:intergenic 55.0%
TCTCCTTCAACCTCTCCCGA+GGG + chr1_1:16858291-16858310 Msa0011180:CDS 55.0%
TGGTGGTTGTGGTTGACCCT+CGG - chr1_1:16858310-16858329 None:intergenic 55.0%
GTGGGGGTAAGGGTGGTATA+TGG - chr1_1:16858371-16858390 None:intergenic 55.0%
CTTTCTTGTGGGGGTAAGGG+TGG - chr1_1:16858378-16858397 None:intergenic 55.0%
ACCCCATACACGTCTGGTTG+AGG + chr1_1:16859420-16859439 Msa0011180:CDS 55.0%
CGTCTGGTTGAGGACAAAGG+TGG + chr1_1:16859430-16859449 Msa0011180:CDS 55.0%
! GGCTGTGGAGTGGCAAGTTT+TGG + chr1_1:16859772-16859791 Msa0011180:CDS 55.0%
GCAAATACTGCGACTAGGGC+AGG - chr1_1:16859892-16859911 None:intergenic 55.0%
! TCGAGGCCAACAGGCTTTTG+AGG + chr1_1:16860278-16860297 Msa0011180:CDS 55.0%
! CGAGGCCAACAGGCTTTTGA+GGG + chr1_1:16860279-16860298 Msa0011180:CDS 55.0%
ACCTGCCCTCAAAAGCCTGT+TGG - chr1_1:16860287-16860306 None:intergenic 55.0%
! GGGCAGGTCGCTACTTTGTA+TGG + chr1_1:16860299-16860318 Msa0011180:CDS 55.0%
ACCTGACAGCTCGCATGTGT+TGG + chr1_1:16860488-16860507 Msa0011180:CDS 55.0%
CCTGACAGCTCGCATGTGTT+GGG + chr1_1:16860489-16860508 Msa0011180:CDS 55.0%
GCGCAGCAATCTCACGACTA+AGG - chr1_1:16860576-16860595 None:intergenic 55.0%
GCCTCCATCAACCACCAGAA+AGG + chr1_1:16861136-16861155 Msa0011180:CDS 55.0%
!! GCCTTTCTGGTGGTTGATGG+AGG - chr1_1:16861140-16861159 None:intergenic 55.0%
TATCCAGGCAGGAGCTCGTT+AGG + chr1_1:16861187-16861206 Msa0011180:CDS 55.0%
ATCCAGGCAGGAGCTCGTTA+GGG + chr1_1:16861188-16861207 Msa0011180:CDS 55.0%
TGTGCGAGCTTTCCGTTGGA+AGG + chr1_1:16861248-16861267 Msa0011180:CDS 55.0%
GCCTCAAGTCATCCGGAGTT+CGG - chr1_1:16861426-16861445 None:intergenic 55.0%
GGAAAGGGCCTCAAGTCATC+CGG - chr1_1:16861433-16861452 None:intergenic 55.0%
TGACTTGAGGCCCTTTCCCT+TGG + chr1_1:16861435-16861454 Msa0011180:intron 55.0%
! TATCGACCATAGCGGTGCCA+TGG + chr1_1:16861990-16862009 Msa0011180:intron 55.0%
TATCTGCCATGGCACCGCTA+TGG - chr1_1:16861999-16862018 None:intergenic 55.0%
!! AGCGGTGCCATGGCAGATAT+CGG + chr1_1:16862000-16862019 Msa0011180:intron 55.0%
CTCTCCGCCATGGTCAGTTT+CGG + chr1_1:16862037-16862056 Msa0011180:intron 55.0%
GTCAGTTTCGGCCGATATGG+TGG + chr1_1:16862049-16862068 Msa0011180:intron 55.0%
!! AGGGTGGTATGGCGGGATTT+TGG + chr1_1:16862110-16862129 Msa0011180:intron 55.0%
GCGTTGTCGATGGCAGAACA+TGG - chr1_1:16862141-16862160 None:intergenic 55.0%
CAATGGGATGGGTGACTACC+CGG + chr1_1:16862722-16862741 Msa0011180:CDS 55.0%
AATGGGATGGGTGACTACCC+GGG + chr1_1:16862723-16862742 Msa0011180:CDS 55.0%
GTGACTACCCGGGATGATGT+AGG + chr1_1:16862733-16862752 Msa0011180:CDS 55.0%
ACCCGGGATGATGTAGGAGA+AGG + chr1_1:16862739-16862758 Msa0011180:CDS 55.0%
CTCTCCTTCAACCTCTCCCG+AGG + chr1_1:16858290-16858309 Msa0011180:CDS 60.0%
TGACCCTCGGGAGAGGTTGA+AGG - chr1_1:16858297-16858316 None:intergenic 60.0%
TTGTGGTTGACCCTCGGGAG+AGG - chr1_1:16858304-16858323 None:intergenic 60.0%
GGTGGTTGTGGTTGACCCTC+GGG - chr1_1:16858309-16858328 None:intergenic 60.0%
GTTGGTTGAGGAGGAGGAGG+TGG - chr1_1:16858336-16858355 None:intergenic 60.0%
! GGAGTTGGTTGAGGAGGAGG+AGG - chr1_1:16858339-16858358 None:intergenic 60.0%
!! GCCAACAGGCTTTTGAGGGC+AGG + chr1_1:16860283-16860302 Msa0011180:CDS 60.0%
CCCAACACATGCGAGCTGTC+AGG - chr1_1:16860492-16860511 None:intergenic 60.0%
!! GGTGGTTGATGGAGGCGTGA+AGG - chr1_1:16861132-16861151 None:intergenic 60.0%
CAAGTCATCCGGAGTTCGGC+AGG - chr1_1:16861422-16861441 None:intergenic 60.0%
GCCGAACTCCGGATGACTTG+AGG + chr1_1:16861422-16861441 Msa0011180:intron 60.0%
! GGTGCCATGGCAGATATCGG+TGG + chr1_1:16862003-16862022 Msa0011180:intron 60.0%
GCCATGGCAGATATCGGTGG+CGG + chr1_1:16862006-16862025 Msa0011180:intron 60.0%
TCCGCCACCGATATCTGCCA+TGG - chr1_1:16862010-16862029 None:intergenic 60.0%
! GGATTTTGGGCTCTCCGCCA+TGG + chr1_1:16862027-16862046 Msa0011180:intron 60.0%
TCGGCCGAAACTGACCATGG+CGG - chr1_1:16862044-16862063 None:intergenic 60.0%
CCACATGGAGGGTGGTATGG+CGG + chr1_1:16862102-16862121 Msa0011180:intron 60.0%
CACATGGAGGGTGGTATGGC+GGG + chr1_1:16862103-16862122 Msa0011180:intron 60.0%
!! GGAGGTGGTGGTGGTGGTTG+TGG - chr1_1:16858321-16858340 None:intergenic 65.0%
! TGAGGAGGAGGAGGTGGTGG+TGG - chr1_1:16858330-16858349 None:intergenic 65.0%
GGTTGAGGAGGAGGAGGTGG+TGG - chr1_1:16858333-16858352 None:intergenic 65.0%
GGCAGGCACACCACGCTCAA+GGG - chr1_1:16859875-16859894 None:intergenic 65.0%
AGCCCTAACGAGCTCCTGCC+TGG - chr1_1:16861193-16861212 None:intergenic 65.0%
GTCATCCGGAGTTCGGCAGG+AGG - chr1_1:16861419-16861438 None:intergenic 65.0%
TGACAGCGCCACATGGAGGG+TGG + chr1_1:16862094-16862113 Msa0011180:intron 65.0%
GCGCCACATGGAGGGTGGTA+TGG + chr1_1:16862099-16862118 Msa0011180:intron 65.0%
CCGCCATACCACCCTCCATG+TGG - chr1_1:16862105-16862124 None:intergenic 65.0%
!! GGAGGAGGAGGTGGTGGTGG+TGG - chr1_1:16858327-16858346 None:intergenic 70.0%
GGGCAGGCACACCACGCTCA+AGG - chr1_1:16859876-16859895 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16858135 16863307 16858135 ID=Msa0011180;Name=Msa0011180
chr1_1 mRNA 16858135 16863307 16858135 ID=Msa0011180-mRNA-1;Parent=Msa0011180;Name=Msa0011180-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.77|0.7|1|1|1|10|500|708
chr1_1 exon 16858135 16858757 16858135 ID=Msa0011180-mRNA-1:exon:6149;Parent=Msa0011180-mRNA-1
chr1_1 exon 16859136 16859294 16859136 ID=Msa0011180-mRNA-1:exon:6150;Parent=Msa0011180-mRNA-1
chr1_1 exon 16859414 16859552 16859414 ID=Msa0011180-mRNA-1:exon:6151;Parent=Msa0011180-mRNA-1
chr1_1 exon 16859721 16859991 16859721 ID=Msa0011180-mRNA-1:exon:6152;Parent=Msa0011180-mRNA-1
chr1_1 exon 16860263 16860373 16860263 ID=Msa0011180-mRNA-1:exon:6153;Parent=Msa0011180-mRNA-1
chr1_1 exon 16860479 16860638 16860479 ID=Msa0011180-mRNA-1:exon:6154;Parent=Msa0011180-mRNA-1
chr1_1 exon 16861059 16861316 16861059 ID=Msa0011180-mRNA-1:exon:6155;Parent=Msa0011180-mRNA-1
chr1_1 exon 16861554 16861676 16861554 ID=Msa0011180-mRNA-1:exon:6156;Parent=Msa0011180-mRNA-1
chr1_1 exon 16862436 16862513 16862436 ID=Msa0011180-mRNA-1:exon:6157;Parent=Msa0011180-mRNA-1
chr1_1 exon 16862603 16863307 16862603 ID=Msa0011180-mRNA-1:exon:6158;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16858135 16858757 16858135 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16859136 16859294 16859136 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16859414 16859552 16859414 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16859721 16859991 16859721 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16860263 16860373 16860263 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16860479 16860638 16860479 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16861059 16861316 16861059 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16861554 16861676 16861554 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16862436 16862513 16862436 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 CDS 16862603 16862807 16862603 ID=Msa0011180-mRNA-1:cds;Parent=Msa0011180-mRNA-1
chr1_1 three_prime_UTR 16862808 16863307 16862808 ID=Msa0011180-mRNA-1:three_prime_utr;Parent=Msa0011180-mRNA-1
Gene Sequence

>Msa0011180

ATGTTATCGATGGTGAAGTCTTTGGATATTCTGAAAACACCTTCTTCTGTCAAAATCATCACTCTCACAATCTTCTCTTTAACCCTTCTCATCTTTCTCTTCACTCGTTATTCCTCTTCAACCACCACCACCACAATCTCTTCCCTCACCTTCTTCTCTCCTTCAACCTCTCCCGAGGGTCAACCACAACCACCACCACCACCTCCTCCTCCTCAACCAACTCCAAAACCCTTCCATATACCACCCTTACCCCCACAAGAAAGAATTGGCCTATTAGACGAAAATGGTGTCATGACAGACAATTTCACAGTCAGCAACAACGATGACGACGAGTCATTGTTAAATTGGAACTTGAACATTACCAACACCAATAGTGATACGGATTTTGTGGTGGAGGAGGTGAAGAAAGTGAAGAAGTATAAGATTTGTAAGGATGTGAAAATGGTGGATTATATACCTTGTTTGGATAATTTTGAAGAGATTGTGAAGTTAAATGGAAGTGAAAGAGGGGAGAAATATGAACGCCATTGTCCGAAACAAGACAAGGGTTTGAATTGTGTTGTTCCTAGGCCTAAGGGTTATAGGAAGCCGATTCTTTGGCCCAAGAGTAGAGATGAGGTGAGGAAGAAAGGGAATAGAAAAGGTATGAAGTGTGATAGGTTGTATGCTGTGAAAGGAGGAGAGGGAATAGAAAAGGTAAGAAGTGTGATAGGTGCAGAATCTGATGGCATAGTGAACTTGCTGCATTTTGATTTTAACAAACTTATAAAATTTAGATTAGTTAATGTACCCCATACACGTCTGGTTGAGGACAAAGGTGGCCAAAATTGGATATCAAGAAAGAAGGATAAATTTGTTTTTCCAGGAGGTGGAACACAGTTTATACATGGCGCAGATAAATACCTGGATCAGATTTCCGAGATGGTTCCTGACATTGCATTTGGTTACAACACAAGAGTTGCTTTAGACATTGGCTGTGGAGTGGCAAGTTTTGGTGCTTTTTTGATGCAACGTAATGTGACCACTCTCTCAATAGCACCAAAAGATGTTCATGAAAACCAGATTCAGTTTGCCCTTGAGCGTGGTGTGCCTGCCCTAGTCGCAGTATTTGCTACACATCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTCATCCATTGTTCAAGATGCAGAATTAACTGGACTCGTGATGATGGAATTTTACTTCTCGAGGCCAACAGGCTTTTGAGGGCAGGTCGCTACTTTGTATGGGCAGCACAGCCCGTATACAAACATGAAGGGAGTCTTCAAGAACAATGGAAAGAAATGAAGAACCTGACAGCTCGCATGTGTTGGGAACTTGTACGGAAAGAAGGTTATATTGCTATATGGAGGAAACCTATGAATAATAGCTGCTACCTTAGTCGTGAGATTGCTGCGCATCCTCCATTATGTGAGTCCAATGATGATCCAGATGATGTTTGGTATGTTGGTCTAAAGGCATGCATAACTCAATTACCTGATAACGGATATGGAGCGAATGTTACTAACTGGCCTTCACGCCTCCATCAACCACCAGAAAGGCTTCAAAGCATCAAAATGGATGCTACTATATCCAGGCAGGAGCTCGTTAGGGCTGAATCAAAATATTGGAATGAAATAATAGATAGTTATGTGCGAGCTTTCCGTTGGAAGGAGTACAACCTAAGAAATGTAATGGACATGAGAGCAGGATTTGGAGGGTTTGCTGCAGCAATGCATGATCTCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTTAGCGGATTCAATACCTTGCCTGTTCTATATGACCGAGGGTTAATAGGTGTTATGCATGATTGGTGTGAGCCATTTGATACATACCCAAGAACATATGATCTGCTACATGCAGCAGGTCTCTTCTCTGTTGAAAAAAAGAGGAAAAAGTGTAATATTTCAACCATCATGCTCGAGATGGATAGGATGCTAAGACCAGGTGGTTATGTATATATACGTGATGCTGTACGTGTTGTTAGTGAACTTGAAGAAATTGCGAAAGCAATGGGATGGGTGACTACCCGGGATGATGTAGGAGAAGGTCCATATGCAAGCTGGAAAATATTAAGGTGTGAGAAACGCTTCTGA
Protein sequence

>Msa0011180

MLSMVKSLDILKTPSSVKIITLTIFSLTLLIFLFTRYSSSTTTTTISSLTFFSPSTSPEGQPQPPPPPPPPQPTPKPFHIPPLPPQERIGLLDENGVMTDNFTVSNNDDDESLLNWNLNITNTNSDTDFVVEEVKKVKKYKICKDVKMVDYIPCLDNFEEIVKLNGSERGEKYERHCPKQDKGLNCVVPRPKGYRKPILWPKSRDEVRKKGNRKGMKCDRLYAVKGGEGIEKVRSVIGAESDGIVNLLHFDFNKLIKFRLVNVPHTRLVEDKGGQNWISRKKDKFVFPGGGTQFIHGADKYLDQISEMVPDIAFGYNTRVALDIGCGVASFGAFLMQRNVTTLSIAPKDVHENQIQFALERGVPALVAVFATHRLLFPSQAFDLIHCSRCRINWTRDDGILLLEANRLLRAGRYFVWAAQPVYKHEGSLQEQWKEMKNLTARMCWELVRKEGYIAIWRKPMNNSCYLSREIAAHPPLCESNDDPDDVWYVGLKACITQLPDNGYGANVTNWPSRLHQPPERLQSIKMDATISRQELVRAESKYWNEIIDSYVRAFRWKEYNLRNVMDMRAGFGGFAAAMHDLQIDCWVMNVVPVSGFNTLPVLYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVEKKRKKCNISTIMLEMDRMLRPGGYVYIRDAVRVVSELEEIAKAMGWVTTRDDVGEGPYASWKILRCEKRF*