AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0772040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772040 MtrunA17_Chr5g0426121 99.846 651 1 0 1 651 1 651 0.0 1340
Msa0772040 MtrunA17_Chr1g0187801 55.757 608 242 7 9 606 6 596 0.0 708
Msa0772040 MtrunA17_Chr1g0167721 59.016 549 208 5 9 553 4 539 0.0 681
Msa0772040 MtrunA17_Chr4g0003821 26.367 512 343 13 2 492 8 506 2.04e-43 164
Msa0772040 MtrunA17_Chr3g0138841 41.538 130 75 1 319 448 426 554 2.71e-21 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772040 AT4G08920.1 80.000 650 111 8 10 651 15 653 0.0 993
Msa0772040 AT1G04400.1 55.155 582 229 6 9 578 7 568 0.0 659
Msa0772040 AT1G04400.2 55.155 582 229 6 9 578 7 568 0.0 659
Msa0772040 AT3G15620.1 28.648 562 345 22 2 534 19 553 1.27e-44 168
Msa0772040 AT5G24850.1 28.721 477 281 19 1 446 78 526 4.46e-26 113
Msa0772040 AT3G15620.2 27.842 431 262 19 2 401 19 431 4.42e-25 109

Find 205 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTATTTCATCTCTTTA+TGG 0.077078 5_2:+46113750 Msa0772040:five_prime_UTR
GGAGATACATATACTCATTT+TGG 0.116066 5_2:+46119359 Msa0772040:CDS
GTTTGGGAATTTCAGTAAAT+TGG 0.139217 5_2:+46119422 Msa0772040:three_prime_UTR
CTTACTGATATTACATTAAA+TGG 0.173041 5_2:-46119648 None:intergenic
CTCTCTCCACATCTGCATTT+CGG 0.260934 5_2:+46116402 Msa0772040:CDS
ATAATCCTACAACTACATTT+TGG 0.273514 5_2:+46117978 Msa0772040:CDS
TAATATTGTCCTTCTTCTTC+AGG 0.276429 5_2:-46113965 None:intergenic
TCAATATAGAAAACAAATAA+AGG 0.277400 5_2:+46113786 Msa0772040:five_prime_UTR
TCCGAATCAAACAAGTCTTT+TGG 0.278556 5_2:+46116457 Msa0772040:CDS
ATCTTCTTCAACCATTTATA+TGG 0.287219 5_2:+46114139 Msa0772040:CDS
AGAGGCCTTTCATGACTATA+AGG 0.302746 5_2:-46116576 None:intergenic
TTTGGGAATTTCAGTAAATT+GGG 0.306328 5_2:+46119423 Msa0772040:three_prime_UTR
TCTCTTGCATTTGCATTTGT+TGG 0.309488 5_2:-46117902 None:intergenic
GGGTTTGTGATGATGATTTA+AGG 0.320271 5_2:+46119580 Msa0772040:three_prime_UTR
TGATTGCTGATTGATGACTA+TGG 0.321963 5_2:+46119792 Msa0772040:three_prime_UTR
GATTCATCTTTGAGAAATCT+TGG 0.332736 5_2:+46114037 Msa0772040:CDS
CTTTGCTTCACTCTTAAACT+TGG 0.334008 5_2:+46119559 Msa0772040:three_prime_UTR
CAAAACCTTGACAAAGAAAC+TGG 0.347403 5_2:-46116751 None:intergenic
TGGGACGTGAACGATGAAAA+TGG 0.354759 5_2:+46114953 Msa0772040:CDS
CCACCTAAAAGAATTATTCC+AGG 0.356435 5_2:+46115052 Msa0772040:CDS
TTGCTGATTTCCAATGTGTT+TGG 0.362328 5_2:+46119405 Msa0772040:three_prime_UTR
AGGAAAGACATGAACCTATT+AGG 0.369574 5_2:+46117747 Msa0772040:CDS
CTTGGTTGGCAGTATATATC+TGG 0.369739 5_2:+46116846 Msa0772040:CDS
CTCAGCCAAAATGTAGTTGT+AGG 0.374414 5_2:-46117983 None:intergenic
TGAGGTGCATTGTTCCTAAT+AGG 0.377118 5_2:-46117761 None:intergenic
TGTTCTAATCTCTCTCTCCT+TGG 0.377210 5_2:+46113574 Msa0772040:five_prime_UTR
CCCAAAAGACTTGTTTGATT+CGG 0.377722 5_2:-46116458 None:intergenic
TGATAGTGTTTCTTCTTTGT+TGG 0.377799 5_2:+46114087 Msa0772040:CDS
TGCTGATTTCCAATGTGTTT+GGG 0.378719 5_2:+46119406 Msa0772040:three_prime_UTR
TGAGTCTCCAAGACCTTCTT+CGG 0.384773 5_2:-46117681 None:intergenic
CAATATGTAGATGATGAAAA+TGG 0.386319 5_2:+46118112 Msa0772040:CDS
GTTGGTAATCTTGCAAGTTC+AGG 0.388626 5_2:-46117476 None:intergenic
GCTGCATCTATTTCCACAAT+TGG 0.397781 5_2:-46117581 None:intergenic
AACTTCTTCGGTTCGAAACT+CGG 0.401899 5_2:+46117856 Msa0772040:CDS
GCAGCTTGGAGTACTGATTC+TGG 0.409884 5_2:-46117527 None:intergenic
AACTTGTTTCTCAAGTCAAT+TGG 0.410128 5_2:+46116516 Msa0772040:CDS
CAAAATATATACTTTACAAT+AGG 0.415780 5_2:-46119499 None:intergenic
ACCAAGGAGCGTTGCAGAAT+GGG 0.420143 5_2:+46117933 Msa0772040:CDS
TTTGCAGCTTCCTTGGAGAT+GGG 0.421455 5_2:+46116770 Msa0772040:CDS
CTTGCTCGAGCATGGTCACC+AGG 0.422711 5_2:+46116279 Msa0772040:CDS
TTGGAAGTTGTTAAATCCAC+TGG 0.423134 5_2:+46114106 Msa0772040:CDS
CGTTTCCAGTTTCTTTGTCA+AGG 0.424584 5_2:+46116746 Msa0772040:CDS
AATGGCAGAAAATGTAGTTA+AGG 0.429021 5_2:-46119630 None:intergenic
TTCCCTTGGGTGGTGAATGA+AGG 0.433449 5_2:+46116618 Msa0772040:CDS
TCCCATTCTGCAACGCTCCT+TGG 0.434195 5_2:-46117934 None:intergenic
AACGGAACCGAAGAAGGTCT+TGG 0.439421 5_2:+46117674 Msa0772040:CDS
AGCATCCACCAAAGGGTAAC+CGG 0.442152 5_2:-46116670 None:intergenic
CTAACACCTGCTGCAAGTGC+AGG 0.446473 5_2:-46113908 None:intergenic
GGTTACCCTTTGGTGGATGC+TGG 0.446690 5_2:+46116672 Msa0772040:CDS
CAGAATCTTCAAGTAGTACT+AGG 0.447575 5_2:+46118029 Msa0772040:CDS
CAAGCTGCTGGTATTGAACT+TGG 0.454507 5_2:+46117542 Msa0772040:CDS
AGGAAGGACCGGTTACCCTT+TGG 0.454831 5_2:+46116662 Msa0772040:CDS
AGAGGTGCTTGTGGGTCATA+AGG 0.463043 5_2:-46115025 None:intergenic
GCATTAACAACCTTCATAAA+CGG 0.463566 5_2:+46116321 Msa0772040:CDS
TGTTCCAGAGTGGTCGCCGC+AGG 0.467747 5_2:+46118072 Msa0772040:CDS
TGAAGCAAAGATTCAAAAGT+TGG 0.469069 5_2:-46119546 None:intergenic
GTTAGAGCAGGTGCTGTAGT+AGG 0.472709 5_2:+46113926 Msa0772040:CDS
ATGGTGGCTTAAGAATAGTT+TGG 0.473463 5_2:+46114006 Msa0772040:CDS
CTGTCGAATTCACGACCATC+AGG 0.474245 5_2:-46116876 None:intergenic
TGGGATGAAGACCATCGGTT+TGG 0.475005 5_2:+46119338 Msa0772040:CDS
ATGTCCTGAGGAAAAGCAAT+AGG 0.475441 5_2:-46117716 None:intergenic
CTTGTTTGATTCGGACAAGA+TGG 0.475620 5_2:-46116449 None:intergenic
TCTCAAGATCAGCATCCAAA+AGG 0.479207 5_2:-46116815 None:intergenic
GTGGTGGATGCAGTATAGTT+TGG 0.481299 5_2:+46113855 Msa0772040:CDS
TTTGCTTCACTCTTAAACTT+GGG 0.483861 5_2:+46119560 Msa0772040:three_prime_UTR
CAATATAGAAAACAAATAAA+GGG 0.488855 5_2:+46113787 Msa0772040:five_prime_UTR
AGAAGAAGAAGAAACTTCTT+CGG 0.489072 5_2:+46117844 Msa0772040:CDS
TTAGAACAAATGACGAGGAT+TGG 0.489841 5_2:-46113559 None:intergenic
GAAGCCTGCGGCGACCACTC+TGG 0.490330 5_2:-46118076 None:intergenic
CAGAAGAGATCTGAGGGTAG+AGG 0.494794 5_2:+46113880 Msa0772040:CDS
TCAAGAGCTGCAGCAGAAAA+CGG 0.494972 5_2:+46117656 Msa0772040:CDS
CACCATCTTGAAACCCTACC+AGG 0.495232 5_2:-46113989 None:intergenic
TTGCAGCTTCCTTGGAGATG+GGG 0.496860 5_2:+46116771 Msa0772040:CDS
AGTCATGAAAGGCCTCTACT+TGG 0.497704 5_2:+46116582 Msa0772040:CDS
ATGAGAGAGTTGTGGGCTAC+TGG 0.498793 5_2:+46116696 Msa0772040:CDS
TCTTCGGTTCGAAACTCGGC+AGG 0.500512 5_2:+46117860 Msa0772040:CDS
AAGGACCGGTTACCCTTTGG+TGG 0.502290 5_2:+46116665 Msa0772040:CDS
CAAGTTAACACTTTCTTCGC+CGG 0.502530 5_2:-46116499 None:intergenic
GATCTTGAGAGCGATGCTCT+TGG 0.503245 5_2:+46116828 Msa0772040:CDS
GGCAGAAAATGTAGTTAAGG+AGG 0.508133 5_2:-46119627 None:intergenic
GCAGAAAACGGAACCGAAGA+AGG 0.508391 5_2:+46117668 Msa0772040:CDS
TTGGTCTTAGAGAGTATTCA+AGG 0.508724 5_2:+46116535 Msa0772040:CDS
TGCTGGAATGAGAGAGTTGT+GGG 0.509242 5_2:+46116689 Msa0772040:CDS
AATCAAAAGTTGTGAATGGT+TGG 0.510452 5_2:-46114976 None:intergenic
TGCAGCTTCCTTGGAGATGG+GGG 0.511485 5_2:+46116772 Msa0772040:CDS
ACAATGCACCTCACGGTACT+CGG 0.514485 5_2:+46117771 Msa0772040:CDS
AAAGAATCAAAAGTTGTGAA+TGG 0.514889 5_2:-46114980 None:intergenic
TCGGCGCTACCAGGATCAAA+TGG 0.518616 5_2:+46117790 Msa0772040:CDS
CTTGCAGCAGGTGTTAGAGC+AGG 0.519321 5_2:+46113914 Msa0772040:CDS
GATAACCCTGCACTTGCAGC+AGG 0.519735 5_2:+46113902 Msa0772040:CDS
CCATGGATGATGTATCCATT+CGG 0.522322 5_2:-46117498 None:intergenic
GAAGAAGGACAATATTATCC+TGG 0.525684 5_2:+46113971 Msa0772040:CDS
CTCATTCCAGCATCCACCAA+AGG 0.525962 5_2:-46116678 None:intergenic
GAGGCCTTTCATGACTATAA+GGG 0.526163 5_2:-46116575 None:intergenic
TCACGGTACTCGGCGCTACC+AGG 0.527329 5_2:+46117781 Msa0772040:CDS
AAAGTGTCCTTCTGATACAT+TGG 0.527386 5_2:+46116218 Msa0772040:CDS
TATCCTTCATTCACCACCCA+AGG 0.528784 5_2:-46116621 None:intergenic
GTGGGAGAAGAGGTGCTTGT+GGG 0.530368 5_2:-46115033 None:intergenic
CTGGTAGGGTTTCAAGATGG+TGG 0.531385 5_2:+46113990 Msa0772040:CDS
TCTATTTCCACAATTGGAAG+AGG 0.531905 5_2:-46117575 None:intergenic
TACTTGGTACCATTTGATCC+TGG 0.532087 5_2:-46117799 None:intergenic
TTGAGAGCGATGCTCTTGGT+TGG 0.534497 5_2:+46116832 Msa0772040:CDS
AACCAAGGAGCGTTGCAGAA+TGG 0.534665 5_2:+46117932 Msa0772040:CDS
CAGACTTGAAGCAAGGGATG+TGG 0.535023 5_2:+46119297 Msa0772040:CDS
CGTCGCACATATTCTCCATT+CGG 0.536251 5_2:-46117446 None:intergenic
ATATGGGCACCTGAAGAAGA+AGG 0.536975 5_2:+46113956 Msa0772040:CDS
TTGGTTCAGAAGAGATCTGA+GGG 0.536985 5_2:+46113874 Msa0772040:CDS
AAATAGTGGCACTGAGACAA+AGG 0.537669 5_2:-46113598 None:intergenic
AAACTACCCTCTTCCAATTG+TGG 0.538617 5_2:+46117568 Msa0772040:CDS
ATGACGAGGATTGGTTGAGT+GGG 0.539303 5_2:-46113550 None:intergenic
ATCTGAGTTGAATGAACGTA+CGG 0.539593 5_2:-46114915 None:intergenic
ACTGATTCTGGTGCATTCCA+TGG 0.541816 5_2:-46117515 None:intergenic
AGATTTATTGTATGAACCAT+GGG 0.542783 5_2:+46114934 Msa0772040:CDS
CTACTGGTTGGCTACATGAT+CGG 0.546843 5_2:+46116712 Msa0772040:CDS
TCCTCCATTTGTATGTCCTG+AGG 0.550035 5_2:-46117728 None:intergenic
AAGGACAATATTATCCTGGT+AGG 0.551662 5_2:+46113975 Msa0772040:CDS
CCGATGGTCTTCATCCCACT+TGG 0.552044 5_2:-46119333 None:intergenic
AGATCCATTGTCACTTGTGA+GGG 0.553177 5_2:+46114853 Msa0772040:intron
ACTGAAATTCCCAAACACAT+TGG 0.553785 5_2:-46119415 None:intergenic
CTCAAGATCAGCATCCAAAA+GGG 0.553803 5_2:-46116814 None:intergenic
ACTCTAGAAGAAGTCATACT+TGG 0.554108 5_2:-46117815 None:intergenic
AGGACAATATTATCCTGGTA+GGG 0.555378 5_2:+46113976 Msa0772040:CDS
GATTGCTGATTGATGACTAT+GGG 0.556512 5_2:+46119793 Msa0772040:three_prime_UTR
GATCAGTGGACCGTTTATGA+AGG 0.558630 5_2:-46116331 None:intergenic
CCGAATGGATACATCATCCA+TGG 0.560349 5_2:+46117498 Msa0772040:CDS
TCATTCCAGCATCCACCAAA+GGG 0.560356 5_2:-46116677 None:intergenic
GCATGGAGACAAGGAAGGAC+CGG 0.561971 5_2:+46116651 Msa0772040:CDS
GAAGATTTGAGTGGCTCCAG+TGG 0.562621 5_2:-46114122 None:intergenic
CAGATTTATTGTATGAACCA+TGG 0.564037 5_2:+46114933 Msa0772040:CDS
GGTGGGAGAAGAGGTGCTTG+TGG 0.564135 5_2:-46115034 None:intergenic
ACGCACTTCTTGCTCGAGCA+TGG 0.564346 5_2:+46116271 Msa0772040:CDS
AATGACGAGGATTGGTTGAG+TGG 0.566296 5_2:-46113551 None:intergenic
AAGGAAATTCTAACAGCTCA+AGG 0.566564 5_2:+46114887 Msa0772040:CDS
TTGTTTGCGTTACTCCACCC+TGG 0.566759 5_2:-46116297 None:intergenic
CATTTAATGTAATATCAGTA+AGG 0.570309 5_2:+46119649 Msa0772040:three_prime_UTR
TCCTCAGGACATACAAATGG+AGG 0.573201 5_2:+46117727 Msa0772040:CDS
GAATCAGTACTCCAAGCTGC+TGG 0.576235 5_2:+46117530 Msa0772040:CDS
GCTTCGTGTATAAAATGTGT+AGG 0.576485 5_2:+46119473 Msa0772040:three_prime_UTR
TTGGGAATTTCAGTAAATTG+GGG 0.579990 5_2:+46119424 Msa0772040:three_prime_UTR
TTCTTAGAGTACTCGATCAG+TGG 0.580821 5_2:-46116345 None:intergenic
ATGGAGAATATGTGCGACGT+TGG 0.583479 5_2:+46117450 Msa0772040:CDS
TGGAGAGAGAAATGAGGTTG+TGG 0.585202 5_2:-46116388 None:intergenic
AACTTAAGGTGTCCAAGTAG+AGG 0.586454 5_2:-46116594 None:intergenic
AACAAATGCAAATGCAAGAG+AGG 0.588191 5_2:+46117904 Msa0772040:CDS
GTGGGTCATAAGGCATGCTA+AGG 0.588329 5_2:-46115015 None:intergenic
AAGATGTCATCAAGTGGTGG+TGG 0.591044 5_2:+46113839 Msa0772040:exon
CAAGTTCAATACCAGCAGCT+TGG 0.592599 5_2:-46117541 None:intergenic
TCGAGTACTCTAAGAATCGA+AGG 0.592996 5_2:+46116352 Msa0772040:CDS
ATAGAAAACAAATAAAGGGT+AGG 0.593991 5_2:+46113791 Msa0772040:five_prime_UTR
TGATCCCTCACAAGTGACAA+TGG 0.594519 5_2:-46114857 None:intergenic
TTAAGGCATGGAGACAAGGA+AGG 0.595232 5_2:+46116646 Msa0772040:CDS
CAGATCCATTGTCACTTGTG+AGG 0.595539 5_2:+46114852 Msa0772040:intron
GGATGATGTATCCATTCGGT+TGG 0.597383 5_2:-46117494 None:intergenic
TAACACCTGCTGCAAGTGCA+GGG 0.597921 5_2:-46113907 None:intergenic
ATCCTGGTAGGGTTTCAAGA+TGG 0.598980 5_2:+46113987 Msa0772040:CDS
GCAGAAAATGTAGTTAAGGA+GGG 0.599217 5_2:-46119626 None:intergenic
GGAAATGCAATCTCACCAAG+TGG 0.600524 5_2:+46119318 Msa0772040:CDS
CGACAGAATCGATAATCCAC+AGG 0.602554 5_2:+46116893 Msa0772040:CDS
CTATTTCCACAATTGGAAGA+GGG 0.607403 5_2:-46117574 None:intergenic
TTGCAAGATTACCAACCGAA+TGG 0.609726 5_2:+46117483 Msa0772040:CDS
GACGAGGATTGGTTGAGTGG+GGG 0.609945 5_2:-46113548 None:intergenic
GCCTTTCATGACTATAAGGG+TGG 0.610222 5_2:-46116572 None:intergenic
AGGAAATTCTAACAGCTCAA+GGG 0.612516 5_2:+46114888 Msa0772040:CDS
TCAAACACCAATGTATCAGA+AGG 0.614857 5_2:-46116225 None:intergenic
ACCACCCTTATAGTCATGAA+AGG 0.615076 5_2:+46116571 Msa0772040:CDS
CTCGAGCATGGTCACCAGGG+TGG 0.616762 5_2:+46116283 Msa0772040:CDS
ATCCTTCATTCACCACCCAA+GGG 0.621653 5_2:-46116620 None:intergenic
CTAACAATCTTAGATGTCAA+CGG 0.623444 5_2:-46119733 None:intergenic
TACCACGCAGACTTGAAGCA+AGG 0.623852 5_2:+46119290 Msa0772040:CDS
TTTGGTTCAGAAGAGATCTG+AGG 0.624010 5_2:+46113873 Msa0772040:CDS
AAGTTGTAATGAGAAAATAG+TGG 0.624256 5_2:-46113612 None:intergenic
GCGAATGAAGGAAATGAAGC+CGG 0.625392 5_2:+46116480 Msa0772040:CDS
AGCAAAGATTCAAAAGTTGG+TGG 0.626379 5_2:-46119543 None:intergenic
GCAAGAGAGGCGGTGAACCA+AGG 0.626545 5_2:+46117917 Msa0772040:CDS
GGATACAAGTGTGATCCGAA+TGG 0.626694 5_2:+46117431 Msa0772040:CDS
TGCAGCAACAGTGAGGCTCG+AGG 0.628158 5_2:+46117598 Msa0772040:CDS
TGACGAGGATTGGTTGAGTG+GGG 0.628886 5_2:-46113549 None:intergenic
ACCACGCAGACTTGAAGCAA+GGG 0.629528 5_2:+46119291 Msa0772040:CDS
TATATGTATCTCCAAACCGA+TGG 0.632029 5_2:-46119349 None:intergenic
CCAAGTGGGATGAAGACCAT+CGG 0.632395 5_2:+46119333 Msa0772040:CDS
ATGCTGGAATGAGAGAGTTG+TGG 0.634623 5_2:+46116688 Msa0772040:CDS
GGCACTGAGACAAAGGTCCA+AGG 0.635743 5_2:-46113591 None:intergenic
GGAATAGAAACACTAGACAA+AGG 0.636438 5_2:+46117954 Msa0772040:CDS
AGGGTGGAGTAACGCAAACA+AGG 0.637628 5_2:+46116299 Msa0772040:CDS
AGGAAGCACTTATACAGATG+TGG 0.637665 5_2:+46117618 Msa0772040:CDS
TTGCTCGAGCATGGTCACCA+GGG 0.639347 5_2:+46116280 Msa0772040:CDS
ATATCTGGTACTCTACCTGA+TGG 0.639584 5_2:+46116861 Msa0772040:CDS
ACTTCTCCGAAATGCAGATG+TGG 0.646155 5_2:-46116408 None:intergenic
ATGGTTGAAGAAGATTTGAG+TGG 0.647851 5_2:-46114131 None:intergenic
GAGAGTTGTGGGCTACTGGT+TGG 0.649242 5_2:+46116700 Msa0772040:CDS
ACTACTTGAAGATTCTGCTG+TGG 0.651572 5_2:-46118023 None:intergenic
ATTAGGAACAATGCACCTCA+CGG 0.651645 5_2:+46117764 Msa0772040:CDS
TGTGAGGGATCATAGAGCAA+AGG 0.653336 5_2:+46114868 Msa0772040:CDS
TCCCTTGCTTCAAGTCTGCG+TGG 0.658970 5_2:-46119292 None:intergenic
AAATGCAAATGCAAGAGAGG+CGG 0.669683 5_2:+46117907 Msa0772040:CDS
TGTGTGAAGATGTCATCAAG+TGG 0.673978 5_2:+46113833 Msa0772040:exon
ATGGAGGTGTTGTTCCAGAG+TGG 0.679190 5_2:+46118062 Msa0772040:CDS
TGGGAATTTCAGTAAATTGG+GGG 0.681989 5_2:+46119425 Msa0772040:three_prime_UTR
CAGATGTGGAGAGAGAAATG+AGG 0.688093 5_2:-46116394 None:intergenic
TCAGAGAAGTTAGAAGCCTG+CGG 0.699321 5_2:-46118088 None:intergenic
AAATAGATGCAGCAACAGTG+AGG 0.702577 5_2:+46117591 Msa0772040:CDS
GTGAAGATGTCATCAAGTGG+TGG 0.713099 5_2:+46113836 Msa0772040:exon
GAAATGCAATCTCACCAAGT+GGG 0.713881 5_2:+46119319 Msa0772040:CDS
TGGTAGCGCCGAGTACCGTG+AGG 0.721320 5_2:-46117779 None:intergenic
AGAGATTAGAACAAATGACG+AGG 0.731365 5_2:-46113564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAGATTAATAATAATTTA+AGG - chr5_2:46114377-46114396 None:intergenic 10.0%
!!! CATATTTTTATTTTCTTATT+TGG + chr5_2:46116961-46116980 Msa0772040:intron 10.0%
!!! CTTATTTCTATAATTTTTTT+CGG - chr5_2:46117199-46117218 None:intergenic 10.0%
!!! AATAAAACTATTTTCAATAT+AGG + chr5_2:46118334-46118353 Msa0772040:intron 10.0%
!!! AAAAATATAGCATTACTTTT+GGG - chr5_2:46113693-46113712 None:intergenic 15.0%
!! TCAATATAGAAAACAAATAA+AGG + chr5_2:46113786-46113805 Msa0772040:five_prime_UTR 15.0%
!! CAATATAGAAAACAAATAAA+GGG + chr5_2:46113787-46113806 Msa0772040:five_prime_UTR 15.0%
!! TTAAAGGACTAATTAAAAAT+GGG + chr5_2:46114443-46114462 Msa0772040:intron 15.0%
!!! ATATTTTGTTTTGTTTTTTC+TGG + chr5_2:46114785-46114804 Msa0772040:intron 15.0%
!! TAAATAATGTGATTATACTT+TGG - chr5_2:46115597-46115616 None:intergenic 15.0%
!!! TTTATTTTCTTATTTGGAAA+AGG + chr5_2:46116967-46116986 Msa0772040:intron 15.0%
!!! TAAAGTACATAGTTTTATTA+AGG - chr5_2:46118607-46118626 None:intergenic 15.0%
!! GTAATAGATAAAAAATCATT+TGG + chr5_2:46118971-46118990 Msa0772040:intron 15.0%
!!! ATATTTTTGTAATACATTCA+GGG - chr5_2:46119030-46119049 None:intergenic 15.0%
!! CAAAATATATACTTTACAAT+AGG - chr5_2:46119502-46119521 None:intergenic 15.0%
!!! ACCAAATTTAGAATTTTTCT+TGG + chr5_2:46113655-46113674 Msa0772040:five_prime_UTR 20.0%
!! TCCAAGAAAAATTCTAAATT+TGG - chr5_2:46113659-46113678 None:intergenic 20.0%
!!! CAAAAATATAGCATTACTTT+TGG - chr5_2:46113694-46113713 None:intergenic 20.0%
!!! CAAAAGTAATGCTATATTTT+TGG + chr5_2:46113692-46113711 Msa0772040:five_prime_UTR 20.0%
!!! TCTATATTGATGAAGATTTT+AGG - chr5_2:46113776-46113795 None:intergenic 20.0%
!! ATAAAAACTGACCATATAAA+TGG - chr5_2:46114153-46114172 None:intergenic 20.0%
!! GTTAAAGGACTAATTAAAAA+TGG + chr5_2:46114442-46114461 Msa0772040:intron 20.0%
!!! CTAATTTGATGGATTAAAAA+TGG + chr5_2:46114488-46114507 Msa0772040:intron 20.0%
!!! TAATTATATTTCTGCAGTTT+AGG + chr5_2:46114523-46114542 Msa0772040:intron 20.0%
!! AAAAAGTTGAAATAAAAGTG+AGG - chr5_2:46115104-46115123 None:intergenic 20.0%
!!! AAATTATCCATTTTGAGAAA+AGG + chr5_2:46115210-46115229 Msa0772040:intron 20.0%
!! TATACATCAACAATGAAATT+TGG - chr5_2:46115690-46115709 None:intergenic 20.0%
!!! TATTTTCATAGCGAAAAATA+GGG - chr5_2:46115834-46115853 None:intergenic 20.0%
!!! TCTTTAAACAAACGTATTTT+TGG - chr5_2:46115880-46115899 None:intergenic 20.0%
!! TGAAAATTGTAAACAACTAA+TGG + chr5_2:46118514-46118533 Msa0772040:intron 20.0%
!! GATAGTAAAAAAGAAAACAT+GGG - chr5_2:46118810-46118829 None:intergenic 20.0%
!! GTCTATCAAGAAAATTATTA+AGG + chr5_2:46118866-46118885 Msa0772040:intron 20.0%
!! AAAATTATTAAGGATGTGTT+TGG + chr5_2:46118876-46118895 Msa0772040:intron 20.0%
!! AAATTATTAAGGATGTGTTT+GGG + chr5_2:46118877-46118896 Msa0772040:intron 20.0%
!!! GATATTTTTGTAATACATTC+AGG - chr5_2:46119031-46119050 None:intergenic 20.0%
!! CTTACTGATATTACATTAAA+TGG - chr5_2:46119651-46119670 None:intergenic 20.0%
!! CATTTAATGTAATATCAGTA+AGG + chr5_2:46119649-46119668 Msa0772040:three_prime_UTR 20.0%
!!! TTTGTTTTTATGTTTAAACG+CGG + chr5_2:46119691-46119710 Msa0772040:three_prime_UTR 20.0%
! AAGTTGTAATGAGAAAATAG+TGG - chr5_2:46113615-46113634 None:intergenic 25.0%
! CATTGTATTTCATCTCTTTA+TGG + chr5_2:46113750-46113769 Msa0772040:five_prime_UTR 25.0%
! ATAGAAAACAAATAAAGGGT+AGG + chr5_2:46113791-46113810 Msa0772040:five_prime_UTR 25.0%
!!! TGTAGTAGGTGTTTTTATAT+GGG + chr5_2:46113940-46113959 Msa0772040:CDS 25.0%
! ATCTTCTTCAACCATTTATA+TGG + chr5_2:46114139-46114158 Msa0772040:CDS 25.0%
! TAGTTAAAGGACTAATTTGA+TGG + chr5_2:46114477-46114496 Msa0772040:intron 25.0%
!!! TGATGGATTAAAAATGGTTT+AGG + chr5_2:46114494-46114513 Msa0772040:intron 25.0%
!!! GATGGATTAAAAATGGTTTA+GGG + chr5_2:46114495-46114514 Msa0772040:intron 25.0%
! GATATTACTAAGCAAAAACT+CGG - chr5_2:46114610-46114629 None:intergenic 25.0%
! AGATTTATTGTATGAACCAT+GGG + chr5_2:46114934-46114953 Msa0772040:CDS 25.0%
! AAAGAATCAAAAGTTGTGAA+TGG - chr5_2:46114983-46115002 None:intergenic 25.0%
!!! TCACAACTTTTGATTCTTTT+TGG + chr5_2:46114984-46115003 Msa0772040:CDS 25.0%
!!! CACAACTTTTGATTCTTTTT+GGG + chr5_2:46114985-46115004 Msa0772040:CDS 25.0%
!! AAACCTGGAATAATTCTTTT+AGG - chr5_2:46115058-46115077 None:intergenic 25.0%
! AATAAAAGTGAGGCTAAAAA+AGG - chr5_2:46115094-46115113 None:intergenic 25.0%
!! ATGTATTCCTTTTCTCAAAA+TGG - chr5_2:46115220-46115239 None:intergenic 25.0%
!! AAAAAGATGCAAAAGGTATA+AGG + chr5_2:46115277-46115296 Msa0772040:intron 25.0%
! TTTCAATTATCAATCCAAAG+TGG - chr5_2:46115319-46115338 None:intergenic 25.0%
!!! TCTTCTTATTTTTGTCGAAT+CGG - chr5_2:46115388-46115407 None:intergenic 25.0%
! ATAATGTGATTATACTTTGG+TGG - chr5_2:46115594-46115613 None:intergenic 25.0%
! TAAAGGTTCAACAAATATGT+TGG + chr5_2:46115732-46115751 Msa0772040:intron 25.0%
! TAATGAAACACAAAAGTTGT+AGG - chr5_2:46115797-46115816 None:intergenic 25.0%
!! ATTTTCATAGCGAAAAATAG+GGG - chr5_2:46115833-46115852 None:intergenic 25.0%
!! GTATTTTCATAGCGAAAAAT+AGG - chr5_2:46115835-46115854 None:intergenic 25.0%
! TACCATTGCAAATATATGTT+TGG + chr5_2:46115852-46115871 Msa0772040:intron 25.0%
! ATCCAAACATATATTTGCAA+TGG - chr5_2:46115857-46115876 None:intergenic 25.0%
! AAGAACTAAGAATATCTGTA+TGG - chr5_2:46115956-46115975 None:intergenic 25.0%
! TAAAGTCAAAACATGAAACA+TGG - chr5_2:46116151-46116170 None:intergenic 25.0%
! AAATAAAACACATCCATGTT+TGG + chr5_2:46117053-46117072 Msa0772040:intron 25.0%
! TCAAATAGATTATCCAAACA+TGG - chr5_2:46117069-46117088 None:intergenic 25.0%
! AATAAGCTAAAAACAGACTT+TGG + chr5_2:46117213-46117232 Msa0772040:intron 25.0%
! CATGACAATATAAGAAAAGA+GGG - chr5_2:46117333-46117352 None:intergenic 25.0%
! ACATGACAATATAAGAAAAG+AGG - chr5_2:46117334-46117353 None:intergenic 25.0%
!!! ATTATGTCATTTTCAGTTTG+AGG + chr5_2:46117409-46117428 Msa0772040:intron 25.0%
!!! TTATGTCATTTTCAGTTTGA+GGG + chr5_2:46117410-46117429 Msa0772040:intron 25.0%
!! ATAATCCTACAACTACATTT+TGG + chr5_2:46117978-46117997 Msa0772040:CDS 25.0%
! CAATATGTAGATGATGAAAA+TGG + chr5_2:46118112-46118131 Msa0772040:CDS 25.0%
!! TTAAGTTGTTTATCCAAACT+GGG - chr5_2:46118247-46118266 None:intergenic 25.0%
!! ATTAAGCTTTTTATCCAACT+GGG - chr5_2:46118361-46118380 None:intergenic 25.0%
!! GCTTATTTGAGTTTATTTAC+TGG - chr5_2:46118571-46118590 None:intergenic 25.0%
! TCAAATAAGCTAATTCAAAC+TGG + chr5_2:46118581-46118600 Msa0772040:intron 25.0%
! GGATAGTAAAAAAGAAAACA+TGG - chr5_2:46118811-46118830 None:intergenic 25.0%
! ACTCTTCAATTTAAAAGAAC+AGG - chr5_2:46118832-46118851 None:intergenic 25.0%
!! TGTTCTTTTAAATTGAAGAG+TGG + chr5_2:46118831-46118850 Msa0772040:intron 25.0%
! ATTACTCCACTATTAATCAA+GGG - chr5_2:46118956-46118975 None:intergenic 25.0%
! TATTACTCCACTATTAATCA+AGG - chr5_2:46118957-46118976 None:intergenic 25.0%
! TTTCCAAATATGTATTCTGT+TGG + chr5_2:46119081-46119100 Msa0772040:intron 25.0%
! TAACCAACAGAATACATATT+TGG - chr5_2:46119087-46119106 None:intergenic 25.0%
!! ATGTATTCTGTTGGTTAATT+TGG + chr5_2:46119090-46119109 Msa0772040:intron 25.0%
!! AGTCTTCTTTTAGTAGTTTA+CGG - chr5_2:46119150-46119169 None:intergenic 25.0%
!! GAGATACATATACTCATTTT+GGG + chr5_2:46119360-46119379 Msa0772040:CDS 25.0%
! TTTGGGAATTTCAGTAAATT+GGG + chr5_2:46119423-46119442 Msa0772040:three_prime_UTR 25.0%
!! ATTTTATACACGAAGCAAAA+GGG - chr5_2:46119469-46119488 None:intergenic 25.0%
!! ATATATTTTGTGTAGTGATC+AGG + chr5_2:46119512-46119531 Msa0772040:three_prime_UTR 25.0%
!! TATATTTTGTGTAGTGATCA+GGG + chr5_2:46119513-46119532 Msa0772040:three_prime_UTR 25.0%
TACATAGCATAAAAAAGCTG+TGG + chr5_2:46113496-46113515 Msa0772040:five_prime_UTR 30.0%
!! AATATAGCATTACTTTTGGG+TGG - chr5_2:46113690-46113709 None:intergenic 30.0%
!! CTGTAGTAGGTGTTTTTATA+TGG + chr5_2:46113939-46113958 Msa0772040:CDS 30.0%
TAATATTGTCCTTCTTCTTC+AGG - chr5_2:46113968-46113987 None:intergenic 30.0%
! GATTCATCTTTGAGAAATCT+TGG + chr5_2:46114037-46114056 Msa0772040:CDS 30.0%
! GTTGATCTTTTTGTAACAAG+AGG - chr5_2:46114067-46114086 None:intergenic 30.0%
! TGATAGTGTTTCTTCTTTGT+TGG + chr5_2:46114087-46114106 Msa0772040:CDS 30.0%
! TTGCATGATTTTGTATTTGC+TGG + chr5_2:46114214-46114233 Msa0772040:intron 30.0%
!! TCCCTCAATTGCTTTAAAAA+TGG + chr5_2:46114405-46114424 Msa0772040:intron 30.0%
!!! CCCATTTTTAAAGCAATTGA+GGG - chr5_2:46114409-46114428 None:intergenic 30.0%
!! CCCTCAATTGCTTTAAAAAT+GGG + chr5_2:46114406-46114425 Msa0772040:intron 30.0%
!!! TCCCATTTTTAAAGCAATTG+AGG - chr5_2:46114410-46114429 None:intergenic 30.0%
GGAGAAAGAATGATAGTTAA+AGG + chr5_2:46114427-46114446 Msa0772040:intron 30.0%
GGAGAAAGAATGATAGTTAA+AGG + chr5_2:46114427-46114446 Msa0772040:intron 30.0%
AGTAATATCGACAACATCAT+TGG + chr5_2:46114621-46114640 Msa0772040:intron 30.0%
CAGATTTATTGTATGAACCA+TGG + chr5_2:46114933-46114952 Msa0772040:CDS 30.0%
AATCAAAAGTTGTGAATGGT+TGG - chr5_2:46114979-46114998 None:intergenic 30.0%
!! CTGGAATAATTCTTTTAGGT+GGG - chr5_2:46115054-46115073 None:intergenic 30.0%
ACATAGCAAAAAGATGCAAA+AGG + chr5_2:46115270-46115289 Msa0772040:intron 30.0%
CATCAACAATGAAATTTGGT+AGG - chr5_2:46115686-46115705 None:intergenic 30.0%
AAGAAACTCTACAGATATGT+TGG + chr5_2:46115896-46115915 Msa0772040:intron 30.0%
ACAAAAGTTGTACAAGTACT+TGG + chr5_2:46116091-46116110 Msa0772040:intron 30.0%
GGCAATACAACAGATAATAT+AGG - chr5_2:46116130-46116149 None:intergenic 30.0%
GCATTAACAACCTTCATAAA+CGG + chr5_2:46116321-46116340 Msa0772040:CDS 30.0%
! AACTTGTTTCTCAAGTCAAT+TGG + chr5_2:46116516-46116535 Msa0772040:CDS 30.0%
! GGTGAATGAAGGATATTTTA+AGG + chr5_2:46116629-46116648 Msa0772040:CDS 30.0%
!!! ATGAAGGATATTTTAAGGCA+TGG + chr5_2:46116634-46116653 Msa0772040:CDS 30.0%
! ATGGGGGATGAAATATTTTT+GGG + chr5_2:46116788-46116807 Msa0772040:CDS 30.0%
!!! ATATTTTTGGGATACCCTTT+TGG + chr5_2:46116800-46116819 Msa0772040:CDS 30.0%
TGCTGTTATAAACACTTCTT+TGG + chr5_2:46117020-46117039 Msa0772040:intron 30.0%
AAATGAGTGTATCTATCACT+AGG - chr5_2:46117387-46117406 None:intergenic 30.0%
AGAAGAAGAAGAAACTTCTT+CGG + chr5_2:46117844-46117863 Msa0772040:CDS 30.0%
GTAGATGATGAAAATGGTAT+AGG + chr5_2:46118118-46118137 Msa0772040:intron 30.0%
! CTTAAGTTGTTTATCCAAAC+TGG - chr5_2:46118248-46118267 None:intergenic 30.0%
! TTAAGCTTTTTATCCAACTG+GGG - chr5_2:46118360-46118379 None:intergenic 30.0%
! CATTAAGCTTTTTATCCAAC+TGG - chr5_2:46118362-46118381 None:intergenic 30.0%
CAGTTGGATAAAAAGCTTAA+TGG + chr5_2:46118360-46118379 Msa0772040:intron 30.0%
TTTGAAAACAGCTTATGACA+TGG - chr5_2:46118540-46118559 None:intergenic 30.0%
ATAAACATGTTGAGTGACAA+AGG - chr5_2:46118710-46118729 None:intergenic 30.0%
!!! TAGCTTTTTTACCATTGAGT+TGG - chr5_2:46118771-46118790 None:intergenic 30.0%
TTACTCCACTATTAATCAAG+GGG - chr5_2:46118955-46118974 None:intergenic 30.0%
AACATCTTCAGACATATTCA+AGG - chr5_2:46118999-46119018 None:intergenic 30.0%
! GTGTGTTTTGCTAGTTAATT+TGG + chr5_2:46119058-46119077 Msa0772040:intron 30.0%
AAACGAAAATACACATTCCA+GGG - chr5_2:46119116-46119135 None:intergenic 30.0%
! GGAGATACATATACTCATTT+TGG + chr5_2:46119359-46119378 Msa0772040:CDS 30.0%
GTTTGGGAATTTCAGTAAAT+TGG + chr5_2:46119422-46119441 Msa0772040:three_prime_UTR 30.0%
TTGGGAATTTCAGTAAATTG+GGG + chr5_2:46119424-46119443 Msa0772040:three_prime_UTR 30.0%
! CATTTTATACACGAAGCAAA+AGG - chr5_2:46119470-46119489 None:intergenic 30.0%
TGAAGCAAAGATTCAAAAGT+TGG - chr5_2:46119549-46119568 None:intergenic 30.0%
TTTGCTTCACTCTTAAACTT+GGG + chr5_2:46119560-46119579 Msa0772040:three_prime_UTR 30.0%
AATGGCAGAAAATGTAGTTA+AGG - chr5_2:46119633-46119652 None:intergenic 30.0%
CTAACAATCTTAGATGTCAA+CGG - chr5_2:46119736-46119755 None:intergenic 30.0%
TTAGAACAAATGACGAGGAT+TGG - chr5_2:46113562-46113581 None:intergenic 35.0%
AGAGATTAGAACAAATGACG+AGG - chr5_2:46113567-46113586 None:intergenic 35.0%
GAAGAAGGACAATATTATCC+TGG + chr5_2:46113971-46113990 Msa0772040:CDS 35.0%
AAGGACAATATTATCCTGGT+AGG + chr5_2:46113975-46113994 Msa0772040:CDS 35.0%
AGGACAATATTATCCTGGTA+GGG + chr5_2:46113976-46113995 Msa0772040:CDS 35.0%
ATGGTGGCTTAAGAATAGTT+TGG + chr5_2:46114006-46114025 Msa0772040:CDS 35.0%
TTGGAAGTTGTTAAATCCAC+TGG + chr5_2:46114106-46114125 Msa0772040:CDS 35.0%
ATGGTTGAAGAAGATTTGAG+TGG - chr5_2:46114134-46114153 None:intergenic 35.0%
TGCAGTTTAGGAACCAAATA+AGG + chr5_2:46114535-46114554 Msa0772040:intron 35.0%
GCAGTTTAGGAACCAAATAA+GGG + chr5_2:46114536-46114555 Msa0772040:intron 35.0%
TTAGGAACCAAATAAGGGTA+AGG + chr5_2:46114541-46114560 Msa0772040:intron 35.0%
TAGGAACCAAATAAGGGTAA+GGG + chr5_2:46114542-46114561 Msa0772040:intron 35.0%
AGCAAAAACTCGGTATCATA+TGG - chr5_2:46114600-46114619 None:intergenic 35.0%
ATTGGAGAGTCTATAATCCT+TGG + chr5_2:46114639-46114658 Msa0772040:intron 35.0%
TCAAATTGCTACAACTACCA+AGG - chr5_2:46114659-46114678 None:intergenic 35.0%
AAGGAAATTCTAACAGCTCA+AGG + chr5_2:46114887-46114906 Msa0772040:CDS 35.0%
AGGAAATTCTAACAGCTCAA+GGG + chr5_2:46114888-46114907 Msa0772040:CDS 35.0%
! ATCTGAGTTGAATGAACGTA+CGG - chr5_2:46114918-46114937 None:intergenic 35.0%
! CCTGGAATAATTCTTTTAGG+TGG - chr5_2:46115055-46115074 None:intergenic 35.0%
CCACCTAAAAGAATTATTCC+AGG + chr5_2:46115052-46115071 Msa0772040:CDS 35.0%
GTATAAGGAAAATTCCACAG+TGG + chr5_2:46115292-46115311 Msa0772040:intron 35.0%
AATCGGCAAAGATTAAGTCA+CGG - chr5_2:46115371-46115390 None:intergenic 35.0%
AATGTCTCTGTCTCAAAACT+CGG + chr5_2:46115416-46115435 Msa0772040:intron 35.0%
! AGATCACGAGCTTCTATTTT+CGG + chr5_2:46115477-46115496 Msa0772040:intron 35.0%
GGTAGGACTAATAGTTAATC+AGG - chr5_2:46115669-46115688 None:intergenic 35.0%
ACTTGCTTCTCAGTCAAAAT+TGG + chr5_2:46115766-46115785 Msa0772040:intron 35.0%
CTTGCTTCTCAGTCAAAATT+GGG + chr5_2:46115767-46115786 Msa0772040:intron 35.0%
CATGACACTTACGTAATTGA+TGG + chr5_2:46116039-46116058 Msa0772040:intron 35.0%
! TTGTACAAGTACTTGGTAGT+TGG + chr5_2:46116098-46116117 Msa0772040:intron 35.0%
AACATTTCTTGCCATGTTTC+AGG + chr5_2:46116186-46116205 Msa0772040:intron 35.0%
TTGATACATCACCTGAAACA+TGG - chr5_2:46116200-46116219 None:intergenic 35.0%
! AAAGTGTCCTTCTGATACAT+TGG + chr5_2:46116218-46116237 Msa0772040:CDS 35.0%
TCAAACACCAATGTATCAGA+AGG - chr5_2:46116228-46116247 None:intergenic 35.0%
! TCCGAATCAAACAAGTCTTT+TGG + chr5_2:46116457-46116476 Msa0772040:CDS 35.0%
! CCCAAAAGACTTGTTTGATT+CGG - chr5_2:46116461-46116480 None:intergenic 35.0%
! CCGAATCAAACAAGTCTTTT+GGG + chr5_2:46116458-46116477 Msa0772040:CDS 35.0%
!! TTGGTCTTAGAGAGTATTCA+AGG + chr5_2:46116535-46116554 Msa0772040:CDS 35.0%
! ACACCTTAAGTTTTTCCCTT+GGG + chr5_2:46116605-46116624 Msa0772040:CDS 35.0%
!!! TATTTTAAGGCATGGAGACA+AGG + chr5_2:46116642-46116661 Msa0772040:CDS 35.0%
CAAAACCTTGACAAAGAAAC+TGG - chr5_2:46116754-46116773 None:intergenic 35.0%
! GATGGGGGATGAAATATTTT+TGG + chr5_2:46116787-46116806 Msa0772040:CDS 35.0%
! GAAGTGTTTATAACAGCAAC+AGG - chr5_2:46117018-46117037 None:intergenic 35.0%
CTATTTCCACAATTGGAAGA+GGG - chr5_2:46117577-46117596 None:intergenic 35.0%
TCTATTTCCACAATTGGAAG+AGG - chr5_2:46117578-46117597 None:intergenic 35.0%
! TTTTCCTCAGGACATACAAA+TGG + chr5_2:46117724-46117743 Msa0772040:CDS 35.0%
AGGAAAGACATGAACCTATT+AGG + chr5_2:46117747-46117766 Msa0772040:CDS 35.0%
! ACTCTAGAAGAAGTCATACT+TGG - chr5_2:46117818-46117837 None:intergenic 35.0%
TCTCTTGCATTTGCATTTGT+TGG - chr5_2:46117905-46117924 None:intergenic 35.0%
AACAAATGCAAATGCAAGAG+AGG + chr5_2:46117904-46117923 Msa0772040:CDS 35.0%
GGAATAGAAACACTAGACAA+AGG + chr5_2:46117954-46117973 Msa0772040:CDS 35.0%
CAGAATCTTCAAGTAGTACT+AGG + chr5_2:46118029-46118048 Msa0772040:CDS 35.0%
! ATTTCTCAAAACCACTGGTT+TGG + chr5_2:46118221-46118240 Msa0772040:intron 35.0%
ATGATATCCAGCAGAGTTTA+TGG + chr5_2:46118483-46118502 Msa0772040:intron 35.0%
CTTATTTCCATAAACTCTGC+TGG - chr5_2:46118493-46118512 None:intergenic 35.0%
!! TATGTTCTAGAATCCTCACA+TGG - chr5_2:46118674-46118693 None:intergenic 35.0%
!! ATTGAGTTGGATCCATTACA+TGG - chr5_2:46118758-46118777 None:intergenic 35.0%
!! ATGTAATGGATCCAACTCAA+TGG + chr5_2:46118757-46118776 Msa0772040:intron 35.0%
TATTAAGGATGTGTTTGGGA+TGG + chr5_2:46118881-46118900 Msa0772040:intron 35.0%
ATCTTCCCCTTGATTAATAG+TGG + chr5_2:46118947-46118966 Msa0772040:intron 35.0%
CAAACGAAAATACACATTCC+AGG - chr5_2:46119117-46119136 None:intergenic 35.0%
TATATGTATCTCCAAACCGA+TGG - chr5_2:46119352-46119371 None:intergenic 35.0%
!! TTGCTGATTTCCAATGTGTT+TGG + chr5_2:46119405-46119424 Msa0772040:three_prime_UTR 35.0%
!! TGCTGATTTCCAATGTGTTT+GGG + chr5_2:46119406-46119425 Msa0772040:three_prime_UTR 35.0%
ACTGAAATTCCCAAACACAT+TGG - chr5_2:46119418-46119437 None:intergenic 35.0%
TGGGAATTTCAGTAAATTGG+GGG + chr5_2:46119425-46119444 Msa0772040:three_prime_UTR 35.0%
GCTTCGTGTATAAAATGTGT+AGG + chr5_2:46119473-46119492 Msa0772040:three_prime_UTR 35.0%
AGCAAAGATTCAAAAGTTGG+TGG - chr5_2:46119546-46119565 None:intergenic 35.0%
CTTTGCTTCACTCTTAAACT+TGG + chr5_2:46119559-46119578 Msa0772040:three_prime_UTR 35.0%
! GGGTTTGTGATGATGATTTA+AGG + chr5_2:46119580-46119599 Msa0772040:three_prime_UTR 35.0%
GCAGAAAATGTAGTTAAGGA+GGG - chr5_2:46119629-46119648 None:intergenic 35.0%
! TGATTGCTGATTGATGACTA+TGG + chr5_2:46119792-46119811 Msa0772040:three_prime_UTR 35.0%
! GATTGCTGATTGATGACTAT+GGG + chr5_2:46119793-46119812 Msa0772040:three_prime_UTR 35.0%
TGTTCTAATCTCTCTCTCCT+TGG + chr5_2:46113574-46113593 Msa0772040:five_prime_UTR 40.0%
! AAATAGTGGCACTGAGACAA+AGG - chr5_2:46113601-46113620 None:intergenic 40.0%
TGTGTGAAGATGTCATCAAG+TGG + chr5_2:46113833-46113852 Msa0772040:exon 40.0%
! TTTGGTTCAGAAGAGATCTG+AGG + chr5_2:46113873-46113892 Msa0772040:CDS 40.0%
TTGGTTCAGAAGAGATCTGA+GGG + chr5_2:46113874-46113893 Msa0772040:CDS 40.0%
CTATCACCCTTACCCTTATT+TGG - chr5_2:46114551-46114570 None:intergenic 40.0%
AAGGGTAAGGGTGATAGTTT+AGG + chr5_2:46114554-46114573 Msa0772040:intron 40.0%
! AGATCCATTGTCACTTGTGA+GGG + chr5_2:46114853-46114872 Msa0772040:intron 40.0%
!! ATTCTTTTAGGTGGGAGAAG+AGG - chr5_2:46115046-46115065 None:intergenic 40.0%
AAGTGAGGCTAAAAAAGGAG+AGG - chr5_2:46115089-46115108 None:intergenic 40.0%
AACTCTTGCGGTTCTTAGTT+TGG + chr5_2:46115170-46115189 Msa0772040:intron 40.0%
TCACGGCTAAGACATATACA+TGG - chr5_2:46115449-46115468 None:intergenic 40.0%
ATGTATATGTCTTAGCCGTG+AGG + chr5_2:46115448-46115467 Msa0772040:intron 40.0%
! ATGATAACGCCAGTTGTTGT+TGG + chr5_2:46115500-46115519 Msa0772040:intron 40.0%
! TGATAACGCCAGTTGTTGTT+GGG + chr5_2:46115501-46115520 Msa0772040:intron 40.0%
CTACAGTAGACCACTTTGAT+AGG - chr5_2:46115566-46115585 None:intergenic 40.0%
ATCAAAGTGGTCTACTGTAG+AGG + chr5_2:46115566-46115585 Msa0772040:intron 40.0%
TCAAAGTGGTCTACTGTAGA+GGG + chr5_2:46115567-46115586 Msa0772040:intron 40.0%
!! TGCAACAGAGTGCTGATTAA+AGG + chr5_2:46116008-46116027 Msa0772040:intron 40.0%
! TTCTTAGAGTACTCGATCAG+TGG - chr5_2:46116348-46116367 None:intergenic 40.0%
! TCGAGTACTCTAAGAATCGA+AGG + chr5_2:46116352-46116371 Msa0772040:CDS 40.0%
!! CTTGTTTGATTCGGACAAGA+TGG - chr5_2:46116452-46116471 None:intergenic 40.0%
CAAGTTAACACTTTCTTCGC+CGG - chr5_2:46116502-46116521 None:intergenic 40.0%
ACCACCCTTATAGTCATGAA+AGG + chr5_2:46116571-46116590 Msa0772040:CDS 40.0%
GAGGCCTTTCATGACTATAA+GGG - chr5_2:46116578-46116597 None:intergenic 40.0%
AGAGGCCTTTCATGACTATA+AGG - chr5_2:46116579-46116598 None:intergenic 40.0%
! AACTTAAGGTGTCCAAGTAG+AGG - chr5_2:46116597-46116616 None:intergenic 40.0%
! GACACCTTAAGTTTTTCCCT+TGG + chr5_2:46116604-46116623 Msa0772040:CDS 40.0%
CGTTTCCAGTTTCTTTGTCA+AGG + chr5_2:46116746-46116765 Msa0772040:CDS 40.0%
CTCAAGATCAGCATCCAAAA+GGG - chr5_2:46116817-46116836 None:intergenic 40.0%
TCTCAAGATCAGCATCCAAA+AGG - chr5_2:46116818-46116837 None:intergenic 40.0%
CTTGGTTGGCAGTATATATC+TGG + chr5_2:46116846-46116865 Msa0772040:CDS 40.0%
ATATCTGGTACTCTACCTGA+TGG + chr5_2:46116861-46116880 Msa0772040:CDS 40.0%
GGCTGAAACTAGAAACAGTT+GGG - chr5_2:46117312-46117331 None:intergenic 40.0%
!! GTTGGTAATCTTGCAAGTTC+AGG - chr5_2:46117479-46117498 None:intergenic 40.0%
TTGCAAGATTACCAACCGAA+TGG + chr5_2:46117483-46117502 Msa0772040:CDS 40.0%
CCATGGATGATGTATCCATT+CGG - chr5_2:46117501-46117520 None:intergenic 40.0%
AAACTACCCTCTTCCAATTG+TGG + chr5_2:46117568-46117587 Msa0772040:CDS 40.0%
GCTGCATCTATTTCCACAAT+TGG - chr5_2:46117584-46117603 None:intergenic 40.0%
AAATAGATGCAGCAACAGTG+AGG + chr5_2:46117591-46117610 Msa0772040:CDS 40.0%
!! AGGAAGCACTTATACAGATG+TGG + chr5_2:46117618-46117637 Msa0772040:CDS 40.0%
!! AACACCTATTGCTTTTCCTC+AGG + chr5_2:46117712-46117731 Msa0772040:CDS 40.0%
ATGTCCTGAGGAAAAGCAAT+AGG - chr5_2:46117719-46117738 None:intergenic 40.0%
TGAGGTGCATTGTTCCTAAT+AGG - chr5_2:46117764-46117783 None:intergenic 40.0%
ATTAGGAACAATGCACCTCA+CGG + chr5_2:46117764-46117783 Msa0772040:CDS 40.0%
TACTTGGTACCATTTGATCC+TGG - chr5_2:46117802-46117821 None:intergenic 40.0%
! AACTTCTTCGGTTCGAAACT+CGG + chr5_2:46117856-46117875 Msa0772040:CDS 40.0%
AAATGCAAATGCAAGAGAGG+CGG + chr5_2:46117907-46117926 Msa0772040:CDS 40.0%
CTCAGCCAAAATGTAGTTGT+AGG - chr5_2:46117986-46118005 None:intergenic 40.0%
ACTACTTGAAGATTCTGCTG+TGG - chr5_2:46118026-46118045 None:intergenic 40.0%
AGTCTCACCAATTGATGAGT+TGG + chr5_2:46118173-46118192 Msa0772040:intron 40.0%
GTGAGATTTCTCAAAACCAC+TGG + chr5_2:46118216-46118235 Msa0772040:intron 40.0%
! TTTTCAATATAGGCCCCAGT+TGG + chr5_2:46118344-46118363 Msa0772040:intron 40.0%
!! TTCTAGAATCCTCACATGGA+TGG - chr5_2:46118670-46118689 None:intergenic 40.0%
ACATGTTGAGTGACAAAGGA+AGG - chr5_2:46118706-46118725 None:intergenic 40.0%
ACGTCGTCTAATCCATGTAA+TGG + chr5_2:46118743-46118762 Msa0772040:intron 40.0%
!! GTTTGGGATGGAGGTTTTAT+AGG + chr5_2:46118893-46118912 Msa0772040:intron 40.0%
!! AGGTTTTATAGGCCAGAGAA+GGG + chr5_2:46118904-46118923 Msa0772040:intron 40.0%
TACTAAAAGAAGACTTGCGC+TGG + chr5_2:46119155-46119174 Msa0772040:intron 40.0%
GAAATGCAATCTCACCAAGT+GGG + chr5_2:46119319-46119338 Msa0772040:CDS 40.0%
GGCAGAAAATGTAGTTAAGG+AGG - chr5_2:46119630-46119649 None:intergenic 40.0%
!! ATGACGAGGATTGGTTGAGT+GGG - chr5_2:46113553-46113572 None:intergenic 45.0%
!! AATGACGAGGATTGGTTGAG+TGG - chr5_2:46113554-46113573 None:intergenic 45.0%
GTGAAGATGTCATCAAGTGG+TGG + chr5_2:46113836-46113855 Msa0772040:exon 45.0%
AAGATGTCATCAAGTGGTGG+TGG + chr5_2:46113839-46113858 Msa0772040:exon 45.0%
!! GTGGTGGATGCAGTATAGTT+TGG + chr5_2:46113855-46113874 Msa0772040:CDS 45.0%
ATATGGGCACCTGAAGAAGA+AGG + chr5_2:46113956-46113975 Msa0772040:CDS 45.0%
ATCCTGGTAGGGTTTCAAGA+TGG + chr5_2:46113987-46114006 Msa0772040:CDS 45.0%
! CAGATCCATTGTCACTTGTG+AGG + chr5_2:46114852-46114871 Msa0772040:intron 45.0%
TGATCCCTCACAAGTGACAA+TGG - chr5_2:46114860-46114879 None:intergenic 45.0%
TGTGAGGGATCATAGAGCAA+AGG + chr5_2:46114868-46114887 Msa0772040:CDS 45.0%
! TTTTCATCGTTCACGTCCCA+TGG - chr5_2:46114953-46114972 None:intergenic 45.0%
TGGGACGTGAACGATGAAAA+TGG + chr5_2:46114953-46114972 Msa0772040:CDS 45.0%
GGAGAGGAACAAAGTAAACC+TGG - chr5_2:46115073-46115092 None:intergenic 45.0%
CATGAGTCACAGAACTCTTG+CGG + chr5_2:46115158-46115177 Msa0772040:intron 45.0%
! GCGGTTCTTAGTTTGGATTC+TGG + chr5_2:46115177-46115196 Msa0772040:intron 45.0%
AATTCCACAGTGGACCACTT+TGG + chr5_2:46115302-46115321 Msa0772040:intron 45.0%
TTAAGTCACGGTCTCAGACA+TGG - chr5_2:46115359-46115378 None:intergenic 45.0%
! GATAACGCCAGTTGTTGTTG+GGG + chr5_2:46115502-46115521 Msa0772040:intron 45.0%
! TCTGAAACCCCAACAACAAC+TGG - chr5_2:46115512-46115531 None:intergenic 45.0%
TTTGATAGGTGGTACACGGT+TGG - chr5_2:46115552-46115571 None:intergenic 45.0%
CCACTTTGATAGGTGGTACA+CGG - chr5_2:46115556-46115575 None:intergenic 45.0%
CAGTAGACCACTTTGATAGG+TGG - chr5_2:46115563-46115582 None:intergenic 45.0%
CAAAGTGGTCTACTGTAGAG+GGG + chr5_2:46115568-46115587 Msa0772040:intron 45.0%
GATCAGTGGACCGTTTATGA+AGG - chr5_2:46116334-46116353 None:intergenic 45.0%
TGGAGAGAGAAATGAGGTTG+TGG - chr5_2:46116391-46116410 None:intergenic 45.0%
CAGATGTGGAGAGAGAAATG+AGG - chr5_2:46116397-46116416 None:intergenic 45.0%
CTCTCTCCACATCTGCATTT+CGG + chr5_2:46116402-46116421 Msa0772040:CDS 45.0%
ACTTCTCCGAAATGCAGATG+TGG - chr5_2:46116411-46116430 None:intergenic 45.0%
! CAAGTCTTTTGGGCGAATGA+AGG + chr5_2:46116468-46116487 Msa0772040:CDS 45.0%
GCGAATGAAGGAAATGAAGC+CGG + chr5_2:46116480-46116499 Msa0772040:CDS 45.0%
GCCTTTCATGACTATAAGGG+TGG - chr5_2:46116575-46116594 None:intergenic 45.0%
AGTCATGAAAGGCCTCTACT+TGG + chr5_2:46116582-46116601 Msa0772040:CDS 45.0%
CCACCCAAGGGAAAAACTTA+AGG - chr5_2:46116611-46116630 None:intergenic 45.0%
! CCTTAAGTTTTTCCCTTGGG+TGG + chr5_2:46116608-46116627 Msa0772040:CDS 45.0%
ATCCTTCATTCACCACCCAA+GGG - chr5_2:46116623-46116642 None:intergenic 45.0%
TATCCTTCATTCACCACCCA+AGG - chr5_2:46116624-46116643 None:intergenic 45.0%
TTAAGGCATGGAGACAAGGA+AGG + chr5_2:46116646-46116665 Msa0772040:CDS 45.0%
TCATTCCAGCATCCACCAAA+GGG - chr5_2:46116680-46116699 None:intergenic 45.0%
ATGCTGGAATGAGAGAGTTG+TGG + chr5_2:46116688-46116707 Msa0772040:CDS 45.0%
TGCTGGAATGAGAGAGTTGT+GGG + chr5_2:46116689-46116708 Msa0772040:CDS 45.0%
! CTACTGGTTGGCTACATGAT+CGG + chr5_2:46116712-46116731 Msa0772040:CDS 45.0%
! TCAAGGTTTTGCAGCTTCCT+TGG + chr5_2:46116763-46116782 Msa0772040:CDS 45.0%
! TTTTGCAGCTTCCTTGGAGA+TGG + chr5_2:46116769-46116788 Msa0772040:CDS 45.0%
TTTGCAGCTTCCTTGGAGAT+GGG + chr5_2:46116770-46116789 Msa0772040:CDS 45.0%
TATTTCATCCCCCATCTCCA+AGG - chr5_2:46116783-46116802 None:intergenic 45.0%
CGACAGAATCGATAATCCAC+AGG + chr5_2:46116893-46116912 Msa0772040:CDS 45.0%
GGGCTGAAACTAGAAACAGT+TGG - chr5_2:46117313-46117332 None:intergenic 45.0%
ATGGAGAATATGTGCGACGT+TGG + chr5_2:46117450-46117469 Msa0772040:CDS 45.0%
GGATGATGTATCCATTCGGT+TGG - chr5_2:46117497-46117516 None:intergenic 45.0%
CCGAATGGATACATCATCCA+TGG + chr5_2:46117498-46117517 Msa0772040:CDS 45.0%
! ACTGATTCTGGTGCATTCCA+TGG - chr5_2:46117518-46117537 None:intergenic 45.0%
CAAGTTCAATACCAGCAGCT+TGG - chr5_2:46117544-46117563 None:intergenic 45.0%
! CAAGCTGCTGGTATTGAACT+TGG + chr5_2:46117542-46117561 Msa0772040:CDS 45.0%
TCAAGAGCTGCAGCAGAAAA+CGG + chr5_2:46117656-46117675 Msa0772040:CDS 45.0%
TGAGTCTCCAAGACCTTCTT+CGG - chr5_2:46117684-46117703 None:intergenic 45.0%
TCCTCAGGACATACAAATGG+AGG + chr5_2:46117727-46117746 Msa0772040:CDS 45.0%
TCCTCCATTTGTATGTCCTG+AGG - chr5_2:46117731-46117750 None:intergenic 45.0%
AGTACTAGGAGAGAGAGAGA+TGG + chr5_2:46118043-46118062 Msa0772040:CDS 45.0%
TCAGAGAAGTTAGAAGCCTG+CGG - chr5_2:46118091-46118110 None:intergenic 45.0%
CTACTTCTCCTTACTTGCAG+AGG + chr5_2:46118143-46118162 Msa0772040:intron 45.0%
CTCATCAATTGGTGAGACTG+TGG - chr5_2:46118172-46118191 None:intergenic 45.0%
! AATCTCACCCAGTTTGAGGT+AGG - chr5_2:46118204-46118223 None:intergenic 45.0%
GAGAAATCTCACCCAGTTTG+AGG - chr5_2:46118208-46118227 None:intergenic 45.0%
CCTCACATGGATGGTTGAAT+AGG - chr5_2:46118661-46118680 None:intergenic 45.0%
CCTATTCAACCATCCATGTG+AGG + chr5_2:46118658-46118677 Msa0772040:intron 45.0%
! TAAGGATGTGTTTGGGATGG+AGG + chr5_2:46118884-46118903 Msa0772040:intron 45.0%
!! GAGGTTTTATAGGCCAGAGA+AGG + chr5_2:46118903-46118922 Msa0772040:intron 45.0%
! TCTGTTGGTTAATTTGGCCC+TGG + chr5_2:46119096-46119115 Msa0772040:intron 45.0%
GGAAATGCAATCTCACCAAG+TGG + chr5_2:46119318-46119337 Msa0772040:CDS 45.0%
!! TTTACAAAAAAAAAATATAA+AGG + chr5_2:46115715-46115734 Msa0772040:intron 5.0%
!! TGACGAGGATTGGTTGAGTG+GGG - chr5_2:46113552-46113571 None:intergenic 50.0%
CAGAAGAGATCTGAGGGTAG+AGG + chr5_2:46113880-46113899 Msa0772040:CDS 50.0%
TAACACCTGCTGCAAGTGCA+GGG - chr5_2:46113910-46113929 None:intergenic 50.0%
! GTTAGAGCAGGTGCTGTAGT+AGG + chr5_2:46113926-46113945 Msa0772040:CDS 50.0%
CACCATCTTGAAACCCTACC+AGG - chr5_2:46113992-46114011 None:intergenic 50.0%
CTGGTAGGGTTTCAAGATGG+TGG + chr5_2:46113990-46114009 Msa0772040:CDS 50.0%
GAAGATTTGAGTGGCTCCAG+TGG - chr5_2:46114125-46114144 None:intergenic 50.0%
GTGGGTCATAAGGCATGCTA+AGG - chr5_2:46115018-46115037 None:intergenic 50.0%
!! AGAGGTGCTTGTGGGTCATA+AGG - chr5_2:46115028-46115047 None:intergenic 50.0%
AGTTCTGTGACTCATGCAGC+TGG - chr5_2:46115154-46115173 None:intergenic 50.0%
CAATCCAAAGTGGTCCACTG+TGG - chr5_2:46115309-46115328 None:intergenic 50.0%
CTGTCTCAAAACTCGGCACT+TGG + chr5_2:46115423-46115442 Msa0772040:intron 50.0%
CCGTGTACCACCTATCAAAG+TGG + chr5_2:46115553-46115572 Msa0772040:intron 50.0%
TTGTTTGCGTTACTCCACCC+TGG - chr5_2:46116300-46116319 None:intergenic 50.0%
AGGGTGGAGTAACGCAAACA+AGG + chr5_2:46116299-46116318 Msa0772040:CDS 50.0%
TTCCCTTGGGTGGTGAATGA+AGG + chr5_2:46116618-46116637 Msa0772040:CDS 50.0%
AGCATCCACCAAAGGGTAAC+CGG - chr5_2:46116673-46116692 None:intergenic 50.0%
CTCATTCCAGCATCCACCAA+AGG - chr5_2:46116681-46116700 None:intergenic 50.0%
! ATGAGAGAGTTGTGGGCTAC+TGG + chr5_2:46116696-46116715 Msa0772040:CDS 50.0%
TTGCAGCTTCCTTGGAGATG+GGG + chr5_2:46116771-46116790 Msa0772040:CDS 50.0%
GATCTTGAGAGCGATGCTCT+TGG + chr5_2:46116828-46116847 Msa0772040:CDS 50.0%
TTGAGAGCGATGCTCTTGGT+TGG + chr5_2:46116832-46116851 Msa0772040:CDS 50.0%
CTGTCGAATTCACGACCATC+AGG - chr5_2:46116879-46116898 None:intergenic 50.0%
TGCAGAAGCAATTGCACCTG+TGG - chr5_2:46116912-46116931 None:intergenic 50.0%
!! GCAGCTTGGAGTACTGATTC+TGG - chr5_2:46117530-46117549 None:intergenic 50.0%
GAATCAGTACTCCAAGCTGC+TGG + chr5_2:46117530-46117549 Msa0772040:CDS 50.0%
GCAGAAAACGGAACCGAAGA+AGG + chr5_2:46117668-46117687 Msa0772040:CDS 50.0%
AACGGAACCGAAGAAGGTCT+TGG + chr5_2:46117674-46117693 Msa0772040:CDS 50.0%
ACAATGCACCTCACGGTACT+CGG + chr5_2:46117771-46117790 Msa0772040:CDS 50.0%
!! AACCAAGGAGCGTTGCAGAA+TGG + chr5_2:46117932-46117951 Msa0772040:CDS 50.0%
!! ACCAAGGAGCGTTGCAGAAT+GGG + chr5_2:46117933-46117952 Msa0772040:CDS 50.0%
ACTAGGAGAGAGAGAGATGG+AGG + chr5_2:46118046-46118065 Msa0772040:CDS 50.0%
!! ATGGAGGTGTTGTTCCAGAG+TGG + chr5_2:46118062-46118081 Msa0772040:CDS 50.0%
TGTGGATGCCTCTGCAAGTA+AGG - chr5_2:46118154-46118173 None:intergenic 50.0%
GGCGTGTCCAACTCATCAAT+TGG - chr5_2:46118183-46118202 None:intergenic 50.0%
AGCTCATCACTTCCCTTCTC+TGG - chr5_2:46118919-46118938 None:intergenic 50.0%
TACCACGCAGACTTGAAGCA+AGG + chr5_2:46119290-46119309 Msa0772040:CDS 50.0%
ACCACGCAGACTTGAAGCAA+GGG + chr5_2:46119291-46119310 Msa0772040:CDS 50.0%
CAGACTTGAAGCAAGGGATG+TGG + chr5_2:46119297-46119316 Msa0772040:CDS 50.0%
CCAAGTGGGATGAAGACCAT+CGG + chr5_2:46119333-46119352 Msa0772040:CDS 50.0%
! TGGGATGAAGACCATCGGTT+TGG + chr5_2:46119338-46119357 Msa0772040:CDS 50.0%
!! GACGAGGATTGGTTGAGTGG+GGG - chr5_2:46113551-46113570 None:intergenic 55.0%
! GGCACTGAGACAAAGGTCCA+AGG - chr5_2:46113594-46113613 None:intergenic 55.0%
GATAACCCTGCACTTGCAGC+AGG + chr5_2:46113902-46113921 Msa0772040:CDS 55.0%
CTAACACCTGCTGCAAGTGC+AGG - chr5_2:46113911-46113930 None:intergenic 55.0%
CTTGCAGCAGGTGTTAGAGC+AGG + chr5_2:46113914-46113933 Msa0772040:CDS 55.0%
!! GTGGGAGAAGAGGTGCTTGT+GGG - chr5_2:46115036-46115055 None:intergenic 55.0%
ATGTCTTAGCCGTGAGGACG+TGG + chr5_2:46115454-46115473 Msa0772040:intron 55.0%
TCGTGATCTCCACGTCCTCA+CGG - chr5_2:46115466-46115485 None:intergenic 55.0%
ACGCACTTCTTGCTCGAGCA+TGG + chr5_2:46116271-46116290 Msa0772040:CDS 55.0%
TTGCTCGAGCATGGTCACCA+GGG + chr5_2:46116280-46116299 Msa0772040:CDS 55.0%
GCATGGAGACAAGGAAGGAC+CGG + chr5_2:46116651-46116670 Msa0772040:CDS 55.0%
AGGAAGGACCGGTTACCCTT+TGG + chr5_2:46116662-46116681 Msa0772040:CDS 55.0%
AAGGACCGGTTACCCTTTGG+TGG + chr5_2:46116665-46116684 Msa0772040:CDS 55.0%
! GGTTACCCTTTGGTGGATGC+TGG + chr5_2:46116672-46116691 Msa0772040:CDS 55.0%
! GAGAGTTGTGGGCTACTGGT+TGG + chr5_2:46116700-46116719 Msa0772040:CDS 55.0%
TGCAGCTTCCTTGGAGATGG+GGG + chr5_2:46116772-46116791 Msa0772040:CDS 55.0%
TCGGCGCTACCAGGATCAAA+TGG + chr5_2:46117790-46117809 Msa0772040:CDS 55.0%
! TCTTCGGTTCGAAACTCGGC+AGG + chr5_2:46117860-46117879 Msa0772040:CDS 55.0%
TCCCATTCTGCAACGCTCCT+TGG - chr5_2:46117937-46117956 None:intergenic 55.0%
TGGACACGCCTACCTCAAAC+TGG + chr5_2:46118193-46118212 Msa0772040:intron 55.0%
GGACACGCCTACCTCAAACT+GGG + chr5_2:46118194-46118213 Msa0772040:intron 55.0%
!! ACCACTGGTTTGGCCCAGTT+TGG + chr5_2:46118231-46118250 Msa0772040:intron 55.0%
TCCAAACTGGGCCAAACCAG+TGG - chr5_2:46118235-46118254 None:intergenic 55.0%
TCCCTTGCTTCAAGTCTGCG+TGG - chr5_2:46119295-46119314 None:intergenic 55.0%
CCGATGGTCTTCATCCCACT+TGG - chr5_2:46119336-46119355 None:intergenic 55.0%
!! GGTGGGAGAAGAGGTGCTTG+TGG - chr5_2:46115037-46115056 None:intergenic 60.0%
CTTGCTCGAGCATGGTCACC+AGG + chr5_2:46116279-46116298 Msa0772040:CDS 60.0%
TGCAGCAACAGTGAGGCTCG+AGG + chr5_2:46117598-46117617 Msa0772040:CDS 60.0%
GCAAGAGAGGCGGTGAACCA+AGG + chr5_2:46117917-46117936 Msa0772040:CDS 60.0%
CTCGAGCATGGTCACCAGGG+TGG + chr5_2:46116283-46116302 Msa0772040:CDS 65.0%
! TGGTAGCGCCGAGTACCGTG+AGG - chr5_2:46117782-46117801 None:intergenic 65.0%
TCACGGTACTCGGCGCTACC+AGG + chr5_2:46117781-46117800 Msa0772040:CDS 65.0%
TGTTCCAGAGTGGTCGCCGC+AGG + chr5_2:46118072-46118091 Msa0772040:CDS 65.0%
GAAGCCTGCGGCGACCACTC+TGG - chr5_2:46118079-46118098 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 46113447 46119840 46113447 ID=Msa0772040;Name=Msa0772040
chr5_2 mRNA 46113447 46119840 46113447 ID=Msa0772040-mRNA-1;Parent=Msa0772040;Name=Msa0772040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=395|0.75|0.8|1|1|1|5|437|693
chr5_2 exon 46113447 46114160 46113447 ID=Msa0772040-mRNA-1:exon:13810;Parent=Msa0772040-mRNA-1
chr5_2 exon 46114855 46115073 46114855 ID=Msa0772040-mRNA-1:exon:13811;Parent=Msa0772040-mRNA-1
chr5_2 exon 46116208 46116914 46116208 ID=Msa0772040-mRNA-1:exon:13812;Parent=Msa0772040-mRNA-1
chr5_2 exon 46117425 46118133 46117425 ID=Msa0772040-mRNA-1:exon:13813;Parent=Msa0772040-mRNA-1
chr5_2 exon 46119276 46119840 46119276 ID=Msa0772040-mRNA-1:exon:13814;Parent=Msa0772040-mRNA-1
chr5_2 five_prime_UTR 46113447 46113841 46113447 ID=Msa0772040-mRNA-1:five_prime_utr;Parent=Msa0772040-mRNA-1
chr5_2 CDS 46113842 46114160 46113842 ID=Msa0772040-mRNA-1:cds;Parent=Msa0772040-mRNA-1
chr5_2 CDS 46114855 46115073 46114855 ID=Msa0772040-mRNA-1:cds;Parent=Msa0772040-mRNA-1
chr5_2 CDS 46116208 46116914 46116208 ID=Msa0772040-mRNA-1:cds;Parent=Msa0772040-mRNA-1
chr5_2 CDS 46117425 46118133 46117425 ID=Msa0772040-mRNA-1:cds;Parent=Msa0772040-mRNA-1
chr5_2 CDS 46119276 46119403 46119276 ID=Msa0772040-mRNA-1:cds;Parent=Msa0772040-mRNA-1
chr5_2 three_prime_UTR 46119404 46119840 46119404 ID=Msa0772040-mRNA-1:three_prime_utr;Parent=Msa0772040-mRNA-1
Gene Sequence

>Msa0772040

ATGTCATCAAGTGGTGGTGGATGCAGTATAGTTTGGTTCAGAAGAGATCTGAGGGTAGAGGATAACCCTGCACTTGCAGCAGGTGTTAGAGCAGGTGCTGTAGTAGGTGTTTTTATATGGGCACCTGAAGAAGAAGGACAATATTATCCTGGTAGGGTTTCAAGATGGTGGCTTAAGAATAGTTTGGCTCATCTTGATTCATCTTTGAGAAATCTTGGTACTCCTCTTGTTACAAAAAGATCAACTGATAGTGTTTCTTCTTTGTTGGAAGTTGTTAAATCCACTGGAGCCACTCAAATCTTCTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCATAGAGCAAAGGAAATTCTAACAGCTCAAGGGATTACCGTACGTTCATTCAACTCAGATTTATTGTATGAACCATGGGACGTGAACGATGAAAATGGCCAACCATTCACAACTTTTGATTCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGTATCAAAGTGTCCTTCTGATACATTGGTGTTTGAAGACGATTTAGAGAAAGCGAGCAACGCACTTCTTGCTCGAGCATGGTCACCAGGGTGGAGTAACGCAAACAAGGCATTAACAACCTTCATAAACGGTCCACTGATCGAGTACTCTAAGAATCGAAGGAAAGCAGACAGTGCCACAACCTCATTTCTCTCTCCACATCTGCATTTCGGAGAAGTTAGTGTCAAGAAAGTATTCCATCTTGTCCGAATCAAACAAGTCTTTTGGGCGAATGAAGGAAATGAAGCCGGCGAAGAAAGTGTTAACTTGTTTCTCAAGTCAATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTACTTGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGATATTTTAAGGCATGGAGACAAGGAAGGACCGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACTGGTTGGCTACATGATCGGATACGCGTTGTCGTTTCCAGTTTCTTTGTCAAGGTTTTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGATGCTGATCTTGAGAGCGATGCTCTTGGTTGGCAGTATATATCTGGTACTCTACCTGATGGTCGTGAATTCGACAGAATCGATAATCCACAGTTTGAGGGATACAAGTGTGATCCGAATGGAGAATATGTGCGACGTTGGCTTCCTGAACTTGCAAGATTACCAACCGAATGGATACATCATCCATGGAATGCACCAGAATCAGTACTCCAAGCTGCTGGTATTGAACTTGGCTCAAACTACCCTCTTCCAATTGTGGAAATAGATGCAGCAACAGTGAGGCTCGAGGAAGCACTTATACAGATGTGGCAGCTAGAAGCAGCATCAAGAGCTGCAGCAGAAAACGGAACCGAAGAAGGTCTTGGAGACTCAGCTGAATCAACACCTATTGCTTTTCCTCAGGACATACAAATGGAGGAAAGACATGAACCTATTAGGAACAATGCACCTCACGGTACTCGGCGCTACCAGGATCAAATGGTACCAAGTATGACTTCTTCTAGAGTGAGAGTAGAAGAAGAAGAAACTTCTTCGGTTCGAAACTCGGCAGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAAATGCAAGAGAGGCGGTGAACCAAGGAGCGTTGCAGAATGGGAATAGAAACACTAGACAAAGGCATAATCCTACAACTACATTTTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAGAGAGATGGAGGTGTTGTTCCAGAGTGGTCGCCGCAGGCTTCTAACTTCTCTGATCAATATGTAGATGATGAAAATGATAATACACATATATACCACGCAGACTTGAAGCAAGGGATGTGGAAATGCAATCTCACCAAGTGGGATGAAGACCATCGGTTTGGAGATACATATACTCATTTTGGGAAAGCATTGACGAATGATTAA

Protein sequence

>Msa0772040

MSSSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEALIQMWQLEAASRAAAENGTEEGLGDSAESTPIAFPQDIQMEERHEPIRNNAPHGTRRYQDQMVPSMTSSRVRVEEEETSSVRNSAGDSRAEVPTNANAREAVNQGALQNGNRNTRQRHNPTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENDNTHIYHADLKQGMWKCNLTKWDEDHRFGDTYTHFGKALTND*