AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798950 MtrunA17_Chr5g0403781 96.222 450 17 0 1 450 1 450 0.0 887
Msa0798950 MtrunA17_Chr1g0154711 65.273 311 97 4 139 447 204 505 1.42e-135 399
Msa0798950 MtrunA17_Chr3g0106291 38.672 256 135 7 206 447 62 309 8.87e-42 150
Msa0798950 MtrunA17_Chr2g0278991 35.827 254 157 4 196 447 1041 1290 1.11e-40 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798950 AT4G16580.1 64.189 296 104 2 155 450 171 464 2.09e-132 390
Msa0798950 AT5G66720.1 52.785 413 160 8 47 447 25 414 3.84e-132 387
Msa0798950 AT5G66720.2 52.696 408 165 7 47 447 25 411 9.91e-131 384
Msa0798950 AT4G33500.1 41.036 251 141 4 196 444 474 719 1.50e-50 182
Msa0798950 AT2G30170.1 36.226 265 146 8 198 447 42 298 7.95e-46 161
Msa0798950 AT2G30170.6 39.487 195 110 6 198 388 7 197 2.96e-38 139
Msa0798950 AT2G30170.3 35.371 229 126 7 233 447 1 221 4.22e-38 138
Msa0798950 AT2G30170.5 39.487 195 110 6 198 388 42 232 7.81e-38 139
Msa0798950 AT2G30170.7 38.994 159 90 5 233 388 1 155 1.48e-30 117
Msa0798950 AT2G30170.4 38.926 149 86 4 198 343 42 188 4.31e-28 111
Msa0798950 AT2G30170.2 35.294 153 81 4 307 447 12 158 4.20e-22 92.8

Find 129 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTAAATGCTATTAATT+TGG 0.082909 5_3:-11994210 Msa0798950:CDS
TTCACCTTCCAATGCTATTC+TGG 0.118484 5_3:-11996325 Msa0798950:CDS
TTGCAGATGGTGTTGGTGGC+TGG 0.202067 5_3:-11994921 Msa0798950:CDS
TGTATGGTCCTTTGAATTTC+GGG 0.205284 5_3:-11996161 Msa0798950:CDS
TTGTATGGTCCTTTGAATTT+CGG 0.224793 5_3:-11996162 Msa0798950:CDS
ACCTAATTCGGTTTGGATTA+GGG 0.230336 5_3:+11996928 None:intergenic
AAATATCTATTGTCTTTCTT+TGG 0.238085 5_3:+11993446 None:intergenic
AACCTAATTCGGTTTGGATT+AGG 0.238533 5_3:+11996927 None:intergenic
CCGCTCCTCGCCAATTGATA+TGG 0.239791 5_3:+11994110 None:intergenic
TCCCTAATCCAAACCGAATT+AGG 0.243177 5_3:-11996929 Msa0798950:five_prime_UTR
TGAATAGCAATTACTTGAAT+TGG 0.260291 5_3:+11996383 None:intergenic
CAGAATTCGGGTTTGCTTCA+TGG 0.278734 5_3:-11996108 Msa0798950:CDS
TCAGCTGCTGCTCTCGAGTA+TGG 0.284904 5_3:-11993764 Msa0798950:CDS
CTTAATATACACAATGAAAT+TGG 0.289652 5_3:+11993657 None:intergenic
GCCTTCTCTAACACCCTTAC+TGG 0.296839 5_3:+11994805 None:intergenic
TGAAGACGAGGAATCGATTA+AGG 0.307387 5_3:+11996858 None:intergenic
TCGAATTGCTCTTGCGGAAT+TGG 0.307860 5_3:+11994852 None:intergenic
TATTCTGCTTGCTGCTTGGC+TGG 0.313286 5_3:-11996057 Msa0798950:CDS
GGTTTAAATTTCACATTACT+TGG 0.315601 5_3:-11996592 Msa0798950:five_prime_UTR
AGCAAGTGCTGGTGTTAAAA+AGG 0.316959 5_3:-11996634 Msa0798950:five_prime_UTR
TACTGGATTAAAAGAACCTT+TGG 0.317637 5_3:+11994822 None:intergenic
CGGAATTGGCTACAAGTTCC+TGG 0.321023 5_3:+11994866 None:intergenic
GCACTAAATGCTATTAATTT+GGG 0.330419 5_3:-11994209 Msa0798950:CDS
TCGAGAGCAGCAGCTGAAAA+TGG 0.337984 5_3:+11993770 None:intergenic
GGAGTATTAAACCTTGTTAC+TGG 0.342802 5_3:+11996447 None:intergenic
TAGTTGGAGGATTCAGAATT+CGG 0.347094 5_3:-11996121 Msa0798950:CDS
GGATTCATTGTGATAAGAAA+TGG 0.353829 5_3:-11994179 Msa0798950:CDS
GCTATTAATTTGGGTGATAG+TGG 0.356777 5_3:-11994200 Msa0798950:CDS
TTGAACCCGTGTTGTTGAAC+AGG 0.359872 5_3:+11994137 None:intergenic
GTTGTATAATAATGCAAATA+AGG 0.380102 5_3:+11993475 None:intergenic
TCACCTTCCAATGCTATTCT+GGG 0.384802 5_3:-11996324 Msa0798950:CDS
ATCTTATTCTGCTTGCTGCT+TGG 0.390535 5_3:-11996061 Msa0798950:CDS
CCAGGAGATATCATTGTTGC+TGG 0.394796 5_3:-11993941 Msa0798950:CDS
AAGCCCTTGAAGATGTTATC+AGG 0.397966 5_3:-11995030 Msa0798950:CDS
GAGTTTGAGAAGACCGCAAC+AGG 0.399205 5_3:-11996187 Msa0798950:CDS
TGCAGATGGTGTTGGTGGCT+GGG 0.399726 5_3:-11994920 Msa0798950:CDS
CGCTCCTCGCCAATTGATAT+GGG 0.403739 5_3:+11994111 None:intergenic
TTCAAGGGAAGAACTCATAA+AGG 0.409592 5_3:-11996228 Msa0798950:CDS
GTTCAATTTCCCATATCAAT+TGG 0.409645 5_3:-11994120 Msa0798950:CDS
TCAAGGGAAGAACTCATAAA+GGG 0.414978 5_3:-11996227 Msa0798950:CDS
TATCTATTGTCTTTCTTTGG+AGG 0.420730 5_3:+11993449 None:intergenic
ATTTCAATGTTTCAGAATCT+GGG 0.425590 5_3:-11996676 Msa0798950:intron
ATGATATCTCCTGGAGCAAC+AGG 0.431491 5_3:+11993950 None:intergenic
GAGTATGGATACCGGTTTGA+TGG 0.432535 5_3:-11993749 Msa0798950:CDS
GATATTGTTGGAGTGGTTGT+AGG 0.433182 5_3:-11993884 Msa0798950:CDS
CAGCCCTCCTGATGAACAAC+TGG 0.434352 5_3:-11996007 Msa0798950:CDS
GTTGGTGGCTGGGCAGATGT+TGG 0.436846 5_3:-11994910 Msa0798950:CDS
AGTTGGAGGATTCAGAATTC+GGG 0.439453 5_3:-11996120 Msa0798950:CDS
GCATGCTGGTGTGTACTTCA+AGG 0.449823 5_3:-11996244 Msa0798950:CDS
AGCGAGCTCTTGACACGAAA+AGG 0.460925 5_3:-11993799 Msa0798950:CDS
TGATCCTGATAACATCTTCA+AGG 0.461298 5_3:+11995026 None:intergenic
CAGTTGTTCATCAGGAGGGC+TGG 0.467010 5_3:+11996008 None:intergenic
AAGGAAGAAAGAGACAAAAC+AGG 0.467644 5_3:+11996426 None:intergenic
ACTGGATTAAAAGAACCTTT+GGG 0.468734 5_3:+11994823 None:intergenic
TGTAAGACACGACAACTGTT+AGG 0.469269 5_3:+11993711 None:intergenic
CGATTCCTCGTCTTCACAAT+CGG 0.471084 5_3:-11996851 Msa0798950:intron
ATCTATTGTCTTTCTTTGGA+GGG 0.473967 5_3:+11993450 None:intergenic
GTAATGTGAAATTTAAACCT+TGG 0.474172 5_3:+11996596 None:intergenic
ATCATTGTTGCTGGAACAGA+TGG 0.479550 5_3:-11993932 Msa0798950:CDS
ATATCACTCATTGACTGAGC+TGG 0.489631 5_3:+11993685 None:intergenic
TTTACAGTACCTGTTGCTCC+AGG 0.495219 5_3:-11993959 Msa0798950:CDS
ATGTACAACAATGATATTGT+TGG 0.496451 5_3:-11993896 Msa0798950:CDS
TGCTCAGAAGATAGCAGCAT+TGG 0.497423 5_3:-11993828 Msa0798950:CDS
AACATCTCCCAGAATAGCAT+TGG 0.499454 5_3:+11996317 None:intergenic
CACGTACATGTTAGCCAAAG+TGG 0.502945 5_3:+11995975 None:intergenic
CCAGCAACAATGATATCTCC+TGG 0.503201 5_3:+11993941 None:intergenic
TGTGAAGATGAACAAGCAAT+TGG 0.507426 5_3:-11994946 Msa0798950:CDS
CGTTGGTGCAAGAAAATCAA+TGG 0.508086 5_3:-11996352 Msa0798950:CDS
GATTCATTGTGATAAGAAAT+GGG 0.509981 5_3:-11994178 Msa0798950:CDS
CCTCCAACTAGCATCAAAAG+TGG 0.518120 5_3:+11996134 None:intergenic
ATCCAGATAAGGTGGCGACT+GGG 0.519570 5_3:-11994990 Msa0798950:CDS
CATCCAGATAAGGTGGCGAC+TGG 0.520452 5_3:-11994991 Msa0798950:CDS
ATCTTCTGAGCAGTTGCTTG+TGG 0.525652 5_3:+11993839 None:intergenic
CAAGTTTGCCTCCATCAAAC+CGG 0.526235 5_3:+11993738 None:intergenic
TTAGCTGCCATTCTACACTT+AGG 0.527328 5_3:-11993541 Msa0798950:three_prime_UTR
ACTGGAAAACTCCTCCACTT+TGG 0.533832 5_3:-11995989 Msa0798950:CDS
GAAGGTGATCTACCTAGCTC+TGG 0.535341 5_3:-11994083 Msa0798950:CDS
TGCTATTCAAGCTATAACGT+TGG 0.537036 5_3:-11996369 Msa0798950:CDS
CAAGATTTCACAAAGCATGC+TGG 0.538735 5_3:-11996258 Msa0798950:CDS
GGTGCAACTAGAGCTAGATT+AGG 0.539864 5_3:-11993863 Msa0798950:CDS
ATTGGTGTTGCAGATGGTGT+TGG 0.543019 5_3:-11994928 Msa0798950:CDS
TTTCCAGTTGTTCATCAGGA+GGG 0.543076 5_3:+11996004 None:intergenic
AATTCTGCTGAAGCAAGTGC+TGG 0.543332 5_3:-11996645 Msa0798950:five_prime_UTR
TTCCTCTCGAATTGCTCTTG+CGG 0.547274 5_3:+11994846 None:intergenic
GGTGTTGCAGATGGTGTTGG+TGG 0.549063 5_3:-11994925 Msa0798950:CDS
GTCGAGAAATTCTTTGTCCA+CGG 0.551550 5_3:+11996084 None:intergenic
GTTTAAATTTCACATTACTT+GGG 0.551570 5_3:-11996591 Msa0798950:five_prime_UTR
TCCAGATAAGGTGGCGACTG+GGG 0.551906 5_3:-11994989 Msa0798950:CDS
AAGTATTCCTAAGTGTAGAA+TGG 0.552543 5_3:+11993534 None:intergenic
AACTTTACCTCGCCAGAGCT+AGG 0.556889 5_3:+11994071 None:intergenic
CATGCTGGTGTGTACTTCAA+GGG 0.557081 5_3:-11996243 Msa0798950:CDS
GTCGCCACCTTATCTGGATG+TGG 0.559731 5_3:+11994994 None:intergenic
CCAAATAAAACTAAAACACT+AGG 0.560860 5_3:-11997023 Msa0798950:intron
CTGCTCTCGAGTATGGATAC+CGG 0.564123 5_3:-11993757 Msa0798950:CDS
GGAATTGGCTACAAGTTCCT+GGG 0.570141 5_3:+11994867 None:intergenic
GTGGAACGCCCGAAATTCAA+AGG 0.571207 5_3:+11996153 None:intergenic
CGGGTTTGCTTCATGGACCG+TGG 0.571395 5_3:-11996101 Msa0798950:CDS
TTACCTACCACATCCAGATA+AGG 0.576882 5_3:-11995001 Msa0798950:CDS
TGAACCCGTGTTGTTGAACA+GGG 0.577587 5_3:+11994138 None:intergenic
TCCAGTAAGGGTGTTAGAGA+AGG 0.582497 5_3:-11994806 Msa0798950:CDS
TATCATTGCTCTTATCGATG+AGG 0.593917 5_3:-11994743 Msa0798950:intron
AACATAGTGTGCCAGTAACA+AGG 0.595078 5_3:-11996458 Msa0798950:CDS
GCAGATGTTGGTGTTAATGC+AGG 0.595326 5_3:-11994898 Msa0798950:CDS
CCATATCAATTGGCGAGGAG+CGG 0.596295 5_3:-11994110 Msa0798950:CDS
TTAAGGTTGAAAAGTTTGAG+AGG 0.598886 5_3:+11996875 None:intergenic
TTGGCGAGGAGCGGTACTGA+AGG 0.600462 5_3:-11994101 Msa0798950:CDS
CCAGATAAGGTGGCGACTGG+GGG 0.601048 5_3:-11994988 Msa0798950:CDS
GATCCTGATAACATCTTCAA+GGG 0.603871 5_3:+11995027 None:intergenic
CAAGCAATTGGTGTTGCAGA+TGG 0.607010 5_3:-11994934 Msa0798950:CDS
CCACCTTATCTGGATGTGGT+AGG 0.607414 5_3:+11994998 None:intergenic
AAGTCCCCTGTTCAACAACA+CGG 0.607656 5_3:-11994143 Msa0798950:CDS
CAACAATGATATTGTTGGAG+TGG 0.615629 5_3:-11993891 Msa0798950:CDS
TAATGCAGGACTGTATGCCC+AGG 0.622814 5_3:-11994884 Msa0798950:CDS
GGACCATACAAAACCTGTTG+CGG 0.623270 5_3:+11996174 None:intergenic
AGCAATGATACAAACAGTTG+AGG 0.624236 5_3:+11994756 None:intergenic
AGTCCCCTGTTCAACAACAC+GGG 0.628931 5_3:-11994142 Msa0798950:CDS
ATTTCCCATATCAATTGGCG+AGG 0.641059 5_3:-11994115 Msa0798950:CDS
TATGGATACCGGTTTGATGG+AGG 0.642458 5_3:-11993746 Msa0798950:CDS
TCTCCCAGAATAGCATTGGA+AGG 0.642675 5_3:+11996321 None:intergenic
CCTACCACATCCAGATAAGG+TGG 0.648319 5_3:-11994998 Msa0798950:CDS
TGATCTACCTAGCTCTGGCG+AGG 0.657103 5_3:-11994078 Msa0798950:intron
ACTCATAAAGGGTTTGTGCG+AGG 0.664894 5_3:-11996216 Msa0798950:CDS
TTCGCGAAACAATAGTAACA+AGG 0.665340 5_3:-11996485 Msa0798950:CDS
TCATACCGATTGTGAAGACG+AGG 0.668471 5_3:+11996846 None:intergenic
TTCCGCAAGAGCAATTCGAG+AGG 0.688045 5_3:-11994848 Msa0798950:CDS
GCAATTCGAGAGGAACCCAA+AGG 0.688593 5_3:-11994838 Msa0798950:CDS
GTGTATATTAAGATGCTATG+CGG 0.703785 5_3:-11993646 Msa0798950:three_prime_UTR
GTACATGTTAGCCAAAGTGG+AGG 0.719821 5_3:+11995978 None:intergenic
GAACCCGTGTTGTTGAACAG+GGG 0.730041 5_3:+11994139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr5_3:11993482-11993501 None:intergenic 0.0%
!!! TTTAATATTACAGAAATTTT+AGG - chr5_3:11994725-11994744 Msa0798950:intron 10.0%
!! AATAAAAAAAAATAATGCTA+AGG + chr5_3:11996865-11996884 None:intergenic 10.0%
!!! TAAATCATGGTTTTAAATTA+TGG + chr5_3:11994850-11994869 None:intergenic 15.0%
!! GAATTAATTAAATAACAACT+TGG - chr5_3:11994921-11994940 Msa0798950:CDS 15.0%
!!! TATTTTTTTTCTCTAGAAAA+AGG - chr5_3:11996965-11996984 Msa0798950:intron 15.0%
!! AAAAAAAAAACTGAAACACT+AGG - chr5_3:11993493-11993512 Msa0798950:three_prime_UTR 20.0%
!! AAAACTGAAATAGAGTTAAT+GGG + chr5_3:11993682-11993701 None:intergenic 20.0%
!! GTTTAAATTTCACATTACTT+GGG - chr5_3:11993884-11993903 Msa0798950:CDS 20.0%
!! TCTATTTCAACAACATAAAT+AGG + chr5_3:11994606-11994625 None:intergenic 20.0%
!! TATTTATGTTGTTGAAATAG+AGG - chr5_3:11994605-11994624 Msa0798950:intron 20.0%
!! TTATTTAATTAATTCGTGAC+AGG + chr5_3:11994916-11994935 None:intergenic 20.0%
!! TATTTAATTGATTGAGTAAC+AGG + chr5_3:11996045-11996064 None:intergenic 20.0%
!! AACATTGTACTTAAAAACTT+AGG + chr5_3:11996108-11996127 None:intergenic 20.0%
!! AAAGAATGAAAATTAATCAG+TGG + chr5_3:11996225-11996244 None:intergenic 20.0%
!!! TGATTAATTTTCATTCTTTG+TGG - chr5_3:11996226-11996245 Msa0798950:CDS 20.0%
!! CTTAATATACACAATGAAAT+TGG + chr5_3:11996821-11996840 None:intergenic 20.0%
!! GTTGTATAATAATGCAAATA+AGG + chr5_3:11997003-11997022 None:intergenic 20.0%
!! AAATATCTATTGTCTTTCTT+TGG + chr5_3:11997032-11997051 None:intergenic 20.0%
!!! CCTAGTGTTTTAGTTTTATT+TGG + chr5_3:11993455-11993474 None:intergenic 25.0%
! CCAAATAAAACTAAAACACT+AGG - chr5_3:11993452-11993471 Msa0798950:three_prime_UTR 25.0%
! GAAAACTGAAATAGAGTTAA+TGG + chr5_3:11993683-11993702 None:intergenic 25.0%
! AATTTCAATGTTTCAGAATC+TGG - chr5_3:11993798-11993817 Msa0798950:CDS 25.0%
! ATTTCAATGTTTCAGAATCT+GGG - chr5_3:11993799-11993818 Msa0798950:CDS 25.0%
! GTAATGTGAAATTTAAACCT+TGG + chr5_3:11993882-11993901 None:intergenic 25.0%
! GGTTTAAATTTCACATTACT+TGG - chr5_3:11993883-11993902 Msa0798950:CDS 25.0%
! TGAATAGCAATTACTTGAAT+TGG + chr5_3:11994095-11994114 None:intergenic 25.0%
! TTCAACAACATAAATAGGAT+AGG + chr5_3:11994601-11994620 None:intergenic 25.0%
!! CATCAGTAATATAAAGGTTT+TGG + chr5_3:11994817-11994836 None:intergenic 25.0%
! AAACCTTTATATTACTGATG+CGG - chr5_3:11994817-11994836 Msa0798950:CDS 25.0%
! TATTAGAGAAACCATTAGAA+AGG - chr5_3:11995278-11995297 Msa0798950:intron 25.0%
!! TTGTTTTCTTTTCATCAACA+TGG - chr5_3:11995868-11995887 Msa0798950:intron 25.0%
!! AATTTTGTACAATTCATGTC+TGG - chr5_3:11995892-11995911 Msa0798950:intron 25.0%
!!! TTTTAAGTACAATGTTCGAT+TGG - chr5_3:11996112-11996131 Msa0798950:CDS 25.0%
! GCACTAAATGCTATTAATTT+GGG - chr5_3:11996266-11996285 Msa0798950:CDS 25.0%
! GATTCATTGTGATAAGAAAT+GGG - chr5_3:11996297-11996316 Msa0798950:CDS 25.0%
! AAGTTTATCAATTTATGTGC+AGG - chr5_3:11996491-11996510 Msa0798950:CDS 25.0%
! ATGTACAACAATGATATTGT+TGG - chr5_3:11996579-11996598 Msa0798950:five_prime_UTR 25.0%
! AAAAAAATAATGCTAAGGAG+AGG + chr5_3:11996860-11996879 None:intergenic 25.0%
!! TCTCTAGAAAAAGGTTATTA+TGG - chr5_3:11996974-11996993 Msa0798950:intron 25.0%
TTAAGGTTGAAAAGTTTGAG+AGG + chr5_3:11993603-11993622 None:intergenic 30.0%
! AAGCTGAATGCTTCAATTTT+CGG - chr5_3:11993962-11993981 Msa0798950:CDS 30.0%
TAAAAAAGAACTCGAACACA+AGG + chr5_3:11994071-11994090 None:intergenic 30.0%
TTGTATGGTCCTTTGAATTT+CGG - chr5_3:11994313-11994332 Msa0798950:intron 30.0%
CATAAATAGGATAGGCTTAT+TGG + chr5_3:11994593-11994612 None:intergenic 30.0%
! AAGTTTTCAATTGCACTATG+CGG - chr5_3:11994758-11994777 Msa0798950:CDS 30.0%
AACCTTTATATTACTGATGC+GGG - chr5_3:11994818-11994837 Msa0798950:CDS 30.0%
ATTAAATAACAACTTGGCAG+CGG - chr5_3:11994927-11994946 Msa0798950:CDS 30.0%
TTATACTACTACGTGTTGTA+TGG - chr5_3:11994975-11994994 Msa0798950:CDS 30.0%
!! TAGAGAAGTTGGTAGAAAAT+AGG - chr5_3:11995144-11995163 Msa0798950:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr5_3:11995211-11995230 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr5_3:11995212-11995231 Msa0798950:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG + chr5_3:11995270-11995289 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG - chr5_3:11995287-11995306 Msa0798950:intron 30.0%
AATGCTCAGGATAAGTAAAT+GGG + chr5_3:11995391-11995410 None:intergenic 30.0%
AATACAAGTATTCAATGCTC+AGG + chr5_3:11995404-11995423 None:intergenic 30.0%
ACTGGATTAAAAGAACCTTT+GGG + chr5_3:11995655-11995674 None:intergenic 30.0%
TACTGGATTAAAAGAACCTT+TGG + chr5_3:11995656-11995675 None:intergenic 30.0%
! AAGGTTCTTTTAATCCAGTA+AGG - chr5_3:11995656-11995675 Msa0798950:intron 30.0%
! AGGTTCTTTTAATCCAGTAA+GGG - chr5_3:11995657-11995676 Msa0798950:intron 30.0%
!!! TTCTCCAAACTTCTTGTTTT+GGG - chr5_3:11995956-11995975 Msa0798950:intron 30.0%
GTACTTAAAAACTTAGGACT+CGG + chr5_3:11996102-11996121 None:intergenic 30.0%
ATTCTTTGTGGTTGTTTACT+TGG - chr5_3:11996238-11996257 Msa0798950:CDS 30.0%
AATTAATAGCATTTAGTGCC+TGG + chr5_3:11996265-11996284 None:intergenic 30.0%
GGCACTAAATGCTATTAATT+TGG - chr5_3:11996265-11996284 Msa0798950:CDS 30.0%
GGATTCATTGTGATAAGAAA+TGG - chr5_3:11996296-11996315 Msa0798950:CDS 30.0%
GTTCAATTTCCCATATCAAT+TGG - chr5_3:11996355-11996374 Msa0798950:CDS 30.0%
GTGTATATTAAGATGCTATG+CGG - chr5_3:11996829-11996848 Msa0798950:intron 30.0%
AAGTATTCCTAAGTGTAGAA+TGG + chr5_3:11996944-11996963 None:intergenic 30.0%
ATCTATTGTCTTTCTTTGGA+GGG + chr5_3:11997028-11997047 None:intergenic 30.0%
TATCTATTGTCTTTCTTTGG+AGG + chr5_3:11997029-11997048 None:intergenic 30.0%
!! ACCTAATTCGGTTTGGATTA+GGG + chr5_3:11993550-11993569 None:intergenic 35.0%
!! AACCTAATTCGGTTTGGATT+AGG + chr5_3:11993551-11993570 None:intergenic 35.0%
CACAAAAACCTAATTCGGTT+TGG + chr5_3:11993557-11993576 None:intergenic 35.0%
! CAAACCGAATTAGGTTTTTG+TGG - chr5_3:11993555-11993574 Msa0798950:three_prime_UTR 35.0%
GCAACCACAAAAACCTAATT+CGG + chr5_3:11993562-11993581 None:intergenic 35.0%
TAGAGTTAATGGGAGAAAGA+GGG + chr5_3:11993672-11993691 None:intergenic 35.0%
ATAGAGTTAATGGGAGAAAG+AGG + chr5_3:11993673-11993692 None:intergenic 35.0%
! TTGGGACTATTTTGCATACA+AGG - chr5_3:11993902-11993921 Msa0798950:CDS 35.0%
TTCGCGAAACAATAGTAACA+AGG - chr5_3:11993990-11994009 Msa0798950:intron 35.0%
! GGAGTATTAAACCTTGTTAC+TGG + chr5_3:11994031-11994050 None:intergenic 35.0%
AAGGAAGAAAGAGACAAAAC+AGG + chr5_3:11994052-11994071 None:intergenic 35.0%
TGCTATTCAAGCTATAACGT+TGG - chr5_3:11994106-11994125 Msa0798950:CDS 35.0%
TTCAAGGGAAGAACTCATAA+AGG - chr5_3:11994247-11994266 Msa0798950:intron 35.0%
TCAAGGGAAGAACTCATAAA+GGG - chr5_3:11994248-11994267 Msa0798950:intron 35.0%
TGTATGGTCCTTTGAATTTC+GGG - chr5_3:11994314-11994333 Msa0798950:intron 35.0%
TAGTTGGAGGATTCAGAATT+CGG - chr5_3:11994354-11994373 Msa0798950:intron 35.0%
TAGGATAGGCTTATTGGTAT+TGG + chr5_3:11994587-11994606 None:intergenic 35.0%
AATGCAGTATGTAGTTGTAG+TGG - chr5_3:11994685-11994704 Msa0798950:intron 35.0%
AACCCGCATCAGTAATATAA+AGG + chr5_3:11994823-11994842 None:intergenic 35.0%
GGTGAGGAGAATATAAATCA+TGG + chr5_3:11994863-11994882 None:intergenic 35.0%
ATCTCACTGGAAATCAGTAA+TGG + chr5_3:11994884-11994903 None:intergenic 35.0%
TTAATTCGTGACAGGAAACT+TGG + chr5_3:11994908-11994927 None:intergenic 35.0%
TCTACCAACTTCTCTACTAT+AGG + chr5_3:11995140-11995159 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr5_3:11995153-11995172 Msa0798950:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr5_3:11995158-11995177 Msa0798950:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr5_3:11995215-11995234 Msa0798950:intron 35.0%
AAAGAGGTAAAGAAAGACCT+AGG - chr5_3:11995250-11995269 Msa0798950:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG + chr5_3:11995292-11995311 None:intergenic 35.0%
CAATGCTCAGGATAAGTAAA+TGG + chr5_3:11995392-11995411 None:intergenic 35.0%
GATCCTGATAACATCTTCAA+GGG + chr5_3:11995451-11995470 None:intergenic 35.0%
TGATCCTGATAACATCTTCA+AGG + chr5_3:11995452-11995471 None:intergenic 35.0%
TGTGAAGATGAACAAGCAAT+TGG - chr5_3:11995529-11995548 Msa0798950:intron 35.0%
AGCAATGATACAAACAGTTG+AGG + chr5_3:11995722-11995741 None:intergenic 35.0%
TATCATTGCTCTTATCGATG+AGG - chr5_3:11995732-11995751 Msa0798950:intron 35.0%
AGAATGCATATCAAGACTCA+TGG + chr5_3:11995937-11995956 None:intergenic 35.0%
!! CTTCTCCAAACTTCTTGTTT+TGG - chr5_3:11995955-11995974 Msa0798950:intron 35.0%
!!! TCTCCAAACTTCTTGTTTTG+GGG - chr5_3:11995957-11995976 Msa0798950:intron 35.0%
TATCCCCAAAACAAGAAGTT+TGG + chr5_3:11995963-11995982 None:intergenic 35.0%
TTCTCTACAGTCTACAAAAC+TGG - chr5_3:11995986-11996005 Msa0798950:CDS 35.0%
ACAAACTAGACACTTGTTTG+TGG + chr5_3:11996018-11996037 None:intergenic 35.0%
! GCTATTAATTTGGGTGATAG+TGG - chr5_3:11996275-11996294 Msa0798950:CDS 35.0%
TAAAACCACAATCCTAGCAA+TGG - chr5_3:11996434-11996453 Msa0798950:CDS 35.0%
AAACTTCAATCTCCATTGCT+AGG + chr5_3:11996449-11996468 None:intergenic 35.0%
CAACAATGATATTGTTGGAG+TGG - chr5_3:11996584-11996603 Msa0798950:five_prime_UTR 35.0%
TCCCTAATCCAAACCGAATT+AGG - chr5_3:11993546-11993565 Msa0798950:three_prime_UTR 40.0%
TGAAGACGAGGAATCGATTA+AGG + chr5_3:11993620-11993639 None:intergenic 40.0%
!! AGCAAGTGCTGGTGTTAAAA+AGG - chr5_3:11993841-11993860 Msa0798950:CDS 40.0%
!!! GGAATGCACTTTTTCATCCA+AGG - chr5_3:11993862-11993881 Msa0798950:CDS 40.0%
AACATAGTGTGCCAGTAACA+AGG - chr5_3:11994017-11994036 Msa0798950:intron 40.0%
CGTTGGTGCAAGAAAATCAA+TGG - chr5_3:11994123-11994142 Msa0798950:CDS 40.0%
TTCACCTTCCAATGCTATTC+TGG - chr5_3:11994150-11994169 Msa0798950:CDS 40.0%
TCACCTTCCAATGCTATTCT+GGG - chr5_3:11994151-11994170 Msa0798950:CDS 40.0%
AACATCTCCCAGAATAGCAT+TGG + chr5_3:11994161-11994180 None:intergenic 40.0%
CAAGATTTCACAAAGCATGC+TGG - chr5_3:11994217-11994236 Msa0798950:intron 40.0%
!! GTTCCACTTTTGATGCTAGT+TGG - chr5_3:11994338-11994357 Msa0798950:intron 40.0%
AGTTGGAGGATTCAGAATTC+GGG - chr5_3:11994355-11994374 Msa0798950:intron 40.0%
GTCGAGAAATTCTTTGTCCA+CGG + chr5_3:11994394-11994413 None:intergenic 40.0%
! ATCTTATTCTGCTTGCTGCT+TGG - chr5_3:11994414-11994433 Msa0798950:intron 40.0%
TTTCCAGTTGTTCATCAGGA+GGG + chr5_3:11994474-11994493 None:intergenic 40.0%
! TTTTCCAGTTGTTCATCAGG+AGG + chr5_3:11994475-11994494 None:intergenic 40.0%
! GAGTTTTCCAGTTGTTCATC+AGG + chr5_3:11994478-11994497 None:intergenic 40.0%
ACTGGAAATCAGTAATGGTG+AGG + chr5_3:11994879-11994898 None:intergenic 40.0%
CTACTACGTGTTGTATGGTA+CGG - chr5_3:11994980-11994999 Msa0798950:CDS 40.0%
AGACTAGACAGGATAGGATT+AGG - chr5_3:11995081-11995100 Msa0798950:intron 40.0%
AGCACCTATAGTAGAGAAGT+TGG - chr5_3:11995133-11995152 Msa0798950:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr5_3:11995202-11995221 None:intergenic 40.0%
GGATTTAGAGGTCAATGAGT+TGG - chr5_3:11995299-11995318 Msa0798950:intron 40.0%
AAGCCCTTGAAGATGTTATC+AGG - chr5_3:11995445-11995464 Msa0798950:intron 40.0%
TTACCTACCACATCCAGATA+AGG - chr5_3:11995474-11995493 Msa0798950:intron 40.0%
GAAGGCTCACTCAAAAACAA+AGG - chr5_3:11995687-11995706 Msa0798950:intron 40.0%
!! AAGTCAGTTTTGTCGATTGC+AGG - chr5_3:11995790-11995809 Msa0798950:intron 40.0%
!! GTTTTGTCGATTGCAGGTTA+AGG - chr5_3:11995796-11995815 Msa0798950:intron 40.0%
TAGACACTTGTTTGTGGTAC+AGG + chr5_3:11996012-11996031 None:intergenic 40.0%
ATTTCCCATATCAATTGGCG+AGG - chr5_3:11996360-11996379 Msa0798950:CDS 40.0%
AATCTCCATTGCTAGGATTG+TGG + chr5_3:11996442-11996461 None:intergenic 40.0%
ATCATTGTTGCTGGAACAGA+TGG - chr5_3:11996543-11996562 Msa0798950:exon 40.0%
GATATTGTTGGAGTGGTTGT+AGG - chr5_3:11996591-11996610 Msa0798950:five_prime_UTR 40.0%
TGTAAGACACGACAACTGTT+AGG + chr5_3:11996767-11996786 None:intergenic 40.0%
! ATATCACTCATTGACTGAGC+TGG + chr5_3:11996793-11996812 None:intergenic 40.0%
TTAGCTGCCATTCTACACTT+AGG - chr5_3:11996934-11996953 Msa0798950:five_prime_UTR 40.0%
CGATTCCTCGTCTTCACAAT+CGG - chr5_3:11993624-11993643 Msa0798950:three_prime_UTR 45.0%
! TCATACCGATTGTGAAGACG+AGG + chr5_3:11993632-11993651 None:intergenic 45.0%
AATTCTGCTGAAGCAAGTGC+TGG - chr5_3:11993830-11993849 Msa0798950:CDS 45.0%
! TCTCCCAGAATAGCATTGGA+AGG + chr5_3:11994157-11994176 None:intergenic 45.0%
CATGCTGGTGTGTACTTCAA+GGG - chr5_3:11994232-11994251 Msa0798950:intron 45.0%
ACTCATAAAGGGTTTGTGCG+AGG - chr5_3:11994259-11994278 Msa0798950:intron 45.0%
!! AGACCGCAACAGGTTTTGTA+TGG - chr5_3:11994298-11994317 Msa0798950:intron 45.0%
GGACCATACAAAACCTGTTG+CGG + chr5_3:11994304-11994323 None:intergenic 45.0%
CCTCCAACTAGCATCAAAAG+TGG + chr5_3:11994344-11994363 None:intergenic 45.0%
!! CCACTTTTGATGCTAGTTGG+AGG - chr5_3:11994341-11994360 Msa0798950:intron 45.0%
! CAGAATTCGGGTTTGCTTCA+TGG - chr5_3:11994367-11994386 Msa0798950:intron 45.0%
ACTGGAAAACTCCTCCACTT+TGG - chr5_3:11994486-11994505 Msa0798950:intron 45.0%
GTACATGTTAGCCAAAGTGG+AGG + chr5_3:11994500-11994519 None:intergenic 45.0%
CACGTACATGTTAGCCAAAG+TGG + chr5_3:11994503-11994522 None:intergenic 45.0%
GCAGTATGTAGTTGTAGTGG+TGG - chr5_3:11994688-11994707 Msa0798950:intron 45.0%
CAGGAAACTTGGTATCTCAC+TGG + chr5_3:11994897-11994916 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr5_3:11994988-11995007 Msa0798950:CDS 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr5_3:11994989-11995008 Msa0798950:CDS 45.0%
CACTTACTTGACTCTCGTGT+TGG + chr5_3:11995025-11995044 None:intergenic 45.0%
CGAGAGTCAAGTAAGTGTAG+CGG - chr5_3:11995028-11995047 Msa0798950:CDS 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG - chr5_3:11995036-11995055 Msa0798950:CDS 45.0%
GATGAGTGGTAAGACTAGAC+AGG - chr5_3:11995070-11995089 Msa0798950:intron 45.0%
GTGGTAAGACTAGACAGGAT+AGG - chr5_3:11995075-11995094 Msa0798950:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG - chr5_3:11995106-11995125 Msa0798950:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG - chr5_3:11995107-11995126 Msa0798950:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG - chr5_3:11995108-11995127 Msa0798950:intron 45.0%
TTCTTACAACGGCATCTACG+GGG + chr5_3:11995200-11995219 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr5_3:11995201-11995220 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr5_3:11995224-11995243 Msa0798950:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr5_3:11995234-11995253 Msa0798950:intron 45.0%
!! CAAGCAATTGGTGTTGCAGA+TGG - chr5_3:11995541-11995560 Msa0798950:intron 45.0%
!! ATTGGTGTTGCAGATGGTGT+TGG - chr5_3:11995547-11995566 Msa0798950:intron 45.0%
!! GCAGATGTTGGTGTTAATGC+AGG - chr5_3:11995577-11995596 Msa0798950:intron 45.0%
GGAATTGGCTACAAGTTCCT+GGG + chr5_3:11995611-11995630 None:intergenic 45.0%
TCGAATTGCTCTTGCGGAAT+TGG + chr5_3:11995626-11995645 None:intergenic 45.0%
TTCCTCTCGAATTGCTCTTG+CGG + chr5_3:11995632-11995651 None:intergenic 45.0%
!! TCCAGTAAGGGTGTTAGAGA+AGG - chr5_3:11995669-11995688 Msa0798950:intron 45.0%
! TCACTCAAAAACAAAGGCGC+TGG - chr5_3:11995693-11995712 Msa0798950:intron 45.0%
!! CACTCAAAAACAAAGGCGCT+GGG - chr5_3:11995694-11995713 Msa0798950:intron 45.0%
GCTTCATGCATACTGAACAC+TGG - chr5_3:11995840-11995859 Msa0798950:intron 45.0%
GCTGTATCTCGATTCACTGA+AGG - chr5_3:11996142-11996161 Msa0798950:CDS 45.0%
AGCCTTTCTCGATTCACTGA+AGG - chr5_3:11996176-11996195 Msa0798950:CDS 45.0%
TGCCTTCAGTGAATCGAGAA+AGG + chr5_3:11996181-11996200 None:intergenic 45.0%
TGTGGTTGTTTACTTGGTCC+AGG - chr5_3:11996244-11996263 Msa0798950:CDS 45.0%
AAGTCCCCTGTTCAACAACA+CGG - chr5_3:11996332-11996351 Msa0798950:CDS 45.0%
! TGAACCCGTGTTGTTGAACA+GGG + chr5_3:11996340-11996359 None:intergenic 45.0%
! TTGAACCCGTGTTGTTGAAC+AGG + chr5_3:11996341-11996360 None:intergenic 45.0%
TTTACAGTACCTGTTGCTCC+AGG - chr5_3:11996516-11996535 Msa0798950:CDS 45.0%
ATGATATCTCCTGGAGCAAC+AGG + chr5_3:11996528-11996547 None:intergenic 45.0%
CCAGCAACAATGATATCTCC+TGG + chr5_3:11996537-11996556 None:intergenic 45.0%
CCAGGAGATATCATTGTTGC+TGG - chr5_3:11996534-11996553 Msa0798950:CDS 45.0%
GGTGCAACTAGAGCTAGATT+AGG - chr5_3:11996612-11996631 Msa0798950:five_prime_UTR 45.0%
ATCTTCTGAGCAGTTGCTTG+TGG + chr5_3:11996639-11996658 None:intergenic 45.0%
TGCTCAGAAGATAGCAGCAT+TGG - chr5_3:11996647-11996666 Msa0798950:five_prime_UTR 45.0%
!! GAGTATGGATACCGGTTTGA+TGG - chr5_3:11996726-11996745 Msa0798950:intron 45.0%
!! TATGGATACCGGTTTGATGG+AGG - chr5_3:11996729-11996748 Msa0798950:intron 45.0%
CAAGTTTGCCTCCATCAAAC+CGG + chr5_3:11996740-11996759 None:intergenic 45.0%
GCATGCTGGTGTGTACTTCA+AGG - chr5_3:11994231-11994250 Msa0798950:intron 50.0%
GAGTTTGAGAAGACCGCAAC+AGG - chr5_3:11994288-11994307 Msa0798950:intron 50.0%
GTGGAACGCCCGAAATTCAA+AGG + chr5_3:11994325-11994344 None:intergenic 50.0%
! TATTCTGCTTGCTGCTTGGC+TGG - chr5_3:11994418-11994437 Msa0798950:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG - chr5_3:11995109-11995128 Msa0798950:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + chr5_3:11995114-11995133 None:intergenic 50.0%
ACTAAGTGGGATCGGCTACT+TGG + chr5_3:11995327-11995346 None:intergenic 50.0%
AAGTAGCCGATCCCACTTAG+TGG - chr5_3:11995326-11995345 Msa0798950:intron 50.0%
AGTAGCCGATCCCACTTAGT+GGG - chr5_3:11995327-11995346 Msa0798950:intron 50.0%
CTTACCCCACTAAGTGGGAT+CGG + chr5_3:11995335-11995354 None:intergenic 50.0%
CAAGCCTTACCCCACTAAGT+GGG + chr5_3:11995340-11995359 None:intergenic 50.0%
CCACCTTATCTGGATGTGGT+AGG + chr5_3:11995480-11995499 None:intergenic 50.0%
CCTACCACATCCAGATAAGG+TGG - chr5_3:11995477-11995496 Msa0798950:intron 50.0%
ATCCAGATAAGGTGGCGACT+GGG - chr5_3:11995485-11995504 Msa0798950:intron 50.0%
TAATGCAGGACTGTATGCCC+AGG - chr5_3:11995591-11995610 Msa0798950:intron 50.0%
CGGAATTGGCTACAAGTTCC+TGG + chr5_3:11995612-11995631 None:intergenic 50.0%
TTCCGCAAGAGCAATTCGAG+AGG - chr5_3:11995627-11995646 Msa0798950:intron 50.0%
GCAATTCGAGAGGAACCCAA+AGG - chr5_3:11995637-11995656 Msa0798950:intron 50.0%
GCCTTCTCTAACACCCTTAC+TGG + chr5_3:11995673-11995692 None:intergenic 50.0%
GATTCACTGAAGGCAGCACA+AGG - chr5_3:11996152-11996171 Msa0798950:CDS 50.0%
AGTCCCCTGTTCAACAACAC+GGG - chr5_3:11996333-11996352 Msa0798950:CDS 50.0%
! GAACCCGTGTTGTTGAACAG+GGG + chr5_3:11996339-11996358 None:intergenic 50.0%
CGCTCCTCGCCAATTGATAT+GGG + chr5_3:11996367-11996386 None:intergenic 50.0%
CCATATCAATTGGCGAGGAG+CGG - chr5_3:11996365-11996384 Msa0798950:CDS 50.0%
GAAGGTGATCTACCTAGCTC+TGG - chr5_3:11996392-11996411 Msa0798950:CDS 50.0%
AACTTTACCTCGCCAGAGCT+AGG + chr5_3:11996407-11996426 None:intergenic 50.0%
AGCGAGCTCTTGACACGAAA+AGG - chr5_3:11996676-11996695 Msa0798950:intron 50.0%
TCGAGAGCAGCAGCTGAAAA+TGG + chr5_3:11996708-11996727 None:intergenic 50.0%
CTGCTCTCGAGTATGGATAC+CGG - chr5_3:11996718-11996737 Msa0798950:intron 50.0%
CAGTTGTTCATCAGGAGGGC+TGG + chr5_3:11994470-11994489 None:intergenic 55.0%
CAGCCCTCCTGATGAACAAC+TGG - chr5_3:11994468-11994487 Msa0798950:intron 55.0%
GCACTATGCGGCTACAGTTG+CGG - chr5_3:11994770-11994789 Msa0798950:CDS 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - chr5_3:11994992-11995011 Msa0798950:CDS 55.0%
AGGATGTTGCGCTGGATGAG+TGG - chr5_3:11995056-11995075 Msa0798950:intron 55.0%
GTAGCCGATCCCACTTAGTG+GGG - chr5_3:11995328-11995347 Msa0798950:intron 55.0%
CGATCCCACTTAGTGGGGTA+AGG - chr5_3:11995333-11995352 Msa0798950:intron 55.0%
CCAAGCCTTACCCCACTAAG+TGG + chr5_3:11995341-11995360 None:intergenic 55.0%
CCACTTAGTGGGGTAAGGCT+TGG - chr5_3:11995338-11995357 Msa0798950:intron 55.0%
GTCGCCACCTTATCTGGATG+TGG + chr5_3:11995484-11995503 None:intergenic 55.0%
CATCCAGATAAGGTGGCGAC+TGG - chr5_3:11995484-11995503 Msa0798950:intron 55.0%
TCCAGATAAGGTGGCGACTG+GGG - chr5_3:11995486-11995505 Msa0798950:intron 55.0%
! GGTGTTGCAGATGGTGTTGG+TGG - chr5_3:11995550-11995569 Msa0798950:intron 55.0%
!! TTGCAGATGGTGTTGGTGGC+TGG - chr5_3:11995554-11995573 Msa0798950:intron 55.0%
!! TGCAGATGGTGTTGGTGGCT+GGG - chr5_3:11995555-11995574 Msa0798950:intron 55.0%
CCGCTCCTCGCCAATTGATA+TGG + chr5_3:11996368-11996387 None:intergenic 55.0%
!! TGATCTACCTAGCTCTGGCG+AGG - chr5_3:11996397-11996416 Msa0798950:CDS 55.0%
TCAGCTGCTGCTCTCGAGTA+TGG - chr5_3:11996711-11996730 Msa0798950:intron 55.0%
! CGGGTTTGCTTCATGGACCG+TGG - chr5_3:11994374-11994393 Msa0798950:intron 60.0%
CTACAGTTGCGGCCGTGATG+TGG - chr5_3:11994781-11994800 Msa0798950:CDS 60.0%
GGAGCCCTGCAACCACATCA+CGG + chr5_3:11994796-11994815 None:intergenic 60.0%
CGGAGATGAGGATGTTGCGC+TGG - chr5_3:11995048-11995067 Msa0798950:CDS 60.0%
CCAGATAAGGTGGCGACTGG+GGG - chr5_3:11995487-11995506 Msa0798950:intron 60.0%
!! GTTGGTGGCTGGGCAGATGT+TGG - chr5_3:11995565-11995584 Msa0798950:intron 60.0%
! TTGGCGAGGAGCGGTACTGA+AGG - chr5_3:11996374-11996393 Msa0798950:CDS 60.0%
TGCGGCCGTGATGTGGTTGC+AGG - chr5_3:11994788-11994807 Msa0798950:CDS 65.0%
GCGGCCGTGATGTGGTTGCA+GGG - chr5_3:11994789-11994808 Msa0798950:CDS 65.0%
CCCCCAGTCGCCACCTTATC+TGG + chr5_3:11995490-11995509 None:intergenic 65.0%
TAAGGTGGCGACTGGGGGAG+AGG - chr5_3:11995492-11995511 Msa0798950:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 11993440 11997057 11993440 ID=Msa0798950;Name=Msa0798950
chr5_3 mRNA 11993440 11997057 11993440 ID=Msa0798950-mRNA-1;Parent=Msa0798950;Name=Msa0798950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=289|1|1|1|0.6|0.5|6|248|450
chr5_3 exon 11993440 11993984 11993440 ID=Msa0798950-mRNA-1:exon:4955;Parent=Msa0798950-mRNA-1
chr5_3 exon 11994079 11994231 11994079 ID=Msa0798950-mRNA-1:exon:4954;Parent=Msa0798950-mRNA-1
chr5_3 exon 11994744 11995068 11994744 ID=Msa0798950-mRNA-1:exon:4953;Parent=Msa0798950-mRNA-1
chr5_3 exon 11995982 11996683 11995982 ID=Msa0798950-mRNA-1:exon:4952;Parent=Msa0798950-mRNA-1
chr5_3 exon 11996852 11996982 11996852 ID=Msa0798950-mRNA-1:exon:4951;Parent=Msa0798950-mRNA-1
chr5_3 exon 11997024 11997057 11997024 ID=Msa0798950-mRNA-1:exon:4950;Parent=Msa0798950-mRNA-1
chr5_3 five_prime_UTR 11997024 11997057 11997024 ID=Msa0798950-mRNA-1:five_prime_utr;Parent=Msa0798950-mRNA-1
chr5_3 five_prime_UTR 11996852 11996982 11996852 ID=Msa0798950-mRNA-1:five_prime_utr;Parent=Msa0798950-mRNA-1
chr5_3 five_prime_UTR 11996560 11996683 11996560 ID=Msa0798950-mRNA-1:five_prime_utr;Parent=Msa0798950-mRNA-1
chr5_3 CDS 11995982 11996559 11995982 ID=Msa0798950-mRNA-1:cds;Parent=Msa0798950-mRNA-1
chr5_3 CDS 11994744 11995068 11994744 ID=Msa0798950-mRNA-1:cds;Parent=Msa0798950-mRNA-1
chr5_3 CDS 11994079 11994231 11994079 ID=Msa0798950-mRNA-1:cds;Parent=Msa0798950-mRNA-1
chr5_3 CDS 11993688 11993984 11993688 ID=Msa0798950-mRNA-1:cds;Parent=Msa0798950-mRNA-1
chr5_3 three_prime_UTR 11993440 11993687 11993440 ID=Msa0798950-mRNA-1:three_prime_utr;Parent=Msa0798950-mRNA-1
Gene Sequence

>Msa0798950

ATGCTATGTGTTACAAATCTCTCAAAGCTGAATGCTTCAATTTTCGGTTGCATTCGCGAAACAATAGTAACAAGGAAACAACATAGTGTGCCAGTAACAAGGTTTAATACTCCTGTTTTGTCTCTTTCTTCCTTGTGTTCGAGTTCTTTTTTATCCAATTCAAGTAATTGCTATTCAAGCTATAACGTTGGTGCAAGAAAATCAATGGCTTCTTCACCTTCCAATGCTATTCTGGGAGATGTTTATGTCGATGATCTGATCTCGAGTTATAGCAGTGTTCAAGATTTCACAAAGCATGCTGGTGTGTACTTCAAGGGAAGAACTCATAAAGGGTTTGTGCGAGGTAGTTTGAGTTTGAGAAGACCGCAACAGGTTTTGTATGGTCCTTTGAATTTCGGGCGTTCCACTTTTGATGCTAGTTGGAGGATTCAGAATTCGGGTTTGCTTCATGGACCGTGGACAAAGAATTTCTCGACATCTTATTCTGCTTGCTGCTTGGCTGGTGCTGCACACGATCTTTCGTATGATACCAGCCCTCCTGATGAACAACTGGAAAACTCCTCCACTTTGGCTAACATAACTACTCTTCATCGCAAGCCCTTGAAGATGTTATCAGGATCATGTTACCTACCACATCCAGATAAGGTGGCGACTGGGGGAGAGGATGCTCATTTTATTTGTGAAGATGAACAAGCAATTGGTGTTGCAGATGGTGTTGGTGGCTGGGCAGATGTTGGTGTTAATGCAGGACTGTATGCCCAGGAACTTGTAGCCAATTCCGCAAGAGCAATTCGAGAGGAACCCAAAGGTTCTTTTAATCCAGTAAGGGTGTTAGAGAAGGCTCACTCAAAAACAAAGGCGCTGGGTTCCTCAACTGTTTGTATCATTGCTCTTATCGATGAGGCACTAAATGCTATTAATTTGGGTGATAGTGGATTCATTGTGATAAGAAATGGGAGCGTGATTTTCAAGTCCCCTGTTCAACAACACGGGTTCAATTTCCCATATCAATTGGCGAGGAGCGGTACTGAAGGTGATCTACCTAGCTCTGGCGAGGTTTTTACAGTACCTGTTGCTCCAGGAGATATCATTGTTGCTGGAACAGATGGTTTATTTGACAACATGTACAACAATGATATTGTTGGAGTGGTTGTAGGTGCAACTAGAGCTAGATTAGGACCACAAGCAACTGCTCAGAAGATAGCAGCATTGGCTCGTCAGCGAGCTCTTGACACGAAAAGGCAGTCACCATTTTCAGCTGCTGCTCTCGAGTATGGATACCGGTTTGATGGAGGCAAACTTGACGACCTAACAGTTGTCGTGTCTTACATATCCAGCTCAGTCAATGAGTGA

Protein sequence

>Msa0798950

MLCVTNLSKLNASIFGCIRETIVTRKQHSVPVTRFNTPVLSLSSLCSSSFLSNSSNCYSSYNVGARKSMASSPSNAILGDVYVDDLISSYSSVQDFTKHAGVYFKGRTHKGFVRGSLSLRRPQQVLYGPLNFGRSTFDASWRIQNSGLLHGPWTKNFSTSYSACCLAGAAHDLSYDTSPPDEQLENSSTLANITTLHRKPLKMLSGSCYLPHPDKVATGGEDAHFICEDEQAIGVADGVGGWADVGVNAGLYAQELVANSARAIREEPKGSFNPVRVLEKAHSKTKALGSSTVCIIALIDEALNAINLGDSGFIVIRNGSVIFKSPVQQHGFNFPYQLARSGTEGDLPSSGEVFTVPVAPGDIIVAGTDGLFDNMYNNDIVGVVVGATRARLGPQATAQKIAALARQRALDTKRQSPFSAAALEYGYRFDGGKLDDLTVVVSYISSSVNE*