AlfalfaGEDB | Msa1045780

M. sativa cultivar zhongmu-4 / Msa1045780

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045780	XP_003621803.1	93.182	220	15	0	1	220	1	220	2.21e-139	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045780	sp\|Q9M5J9\|PGIP1_ARATH	41.758	182	99	4	33	209	24	203	5.93e-35	129
Msa1045780	sp\|Q9M5J9\|PGIP1_ARATH	36.517	178	62	6	92	220	155	330	8.55e-18	83.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045780	G7KVQ4	93.182	220	15	0	1	220	1	220	1.06e-139	399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005050	Msa1045780	0.803448	3.469215e-49	-8.615850e-47
Msa0084500	Msa1045780	0.800045	1.732882e-48	-8.615850e-47
Msa0098440	Msa1045780	0.815884	7.352988e-52	-8.615850e-47
Msa0176470	Msa1045780	0.804361	2.241813e-49	-8.615850e-47
Msa0219190	Msa1045780	0.838880	2.211049e-57	-8.615850e-47
Msa0298240	Msa1045780	0.846920	1.604155e-59	-8.615850e-47
Msa0351770	Msa1045780	0.804638	1.962599e-49	-8.615850e-47
Msa0359250	Msa1045780	0.810086	1.372749e-50	-8.615850e-47
Msa0370600	Msa1045780	0.802432	5.627322e-49	-8.615850e-47
Msa0413930	Msa1045780	0.816986	4.167242e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045780	MtrunA17_Chr7g0222841	93.182	220	15	0	1	220	1	220	2.04e-143	399
Msa1045780	MtrunA17_Chr7g0222861	87.273	220	28	0	1	220	1	220	2.45e-134	376
Msa1045780	MtrunA17_Chr7g0222871	82.432	222	37	2	1	220	1	222	5.53e-123	347
Msa1045780	MtrunA17_Chr7g0222881	81.982	222	38	2	1	220	1	222	3.37e-122	345
Msa1045780	MtrunA17_Chr7g0222901	82.353	221	37	2	1	219	1	221	4.42e-121	342
Msa1045780	MtrunA17_Chr3g0093121	65.044	226	73	2	1	220	1	226	9.44e-85	251
Msa1045780	MtrunA17_Chr7g0215171	44.390	205	105	4	23	220	21	223	1.21e-48	159
Msa1045780	MtrunA17_Chr7g0222921	41.451	193	105	4	6	197	9	194	1.04e-37	135
Msa1045780	MtrunA17_Chr7g0222921	37.079	178	60	5	92	219	210	385	2.28e-21	90.9
Msa1045780	MtrunA17_Chr7g0222921	35.484	124	76	3	89	209	159	281	2.84e-12	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045780	AT5G06860.1	41.758	182	99	4	33	209	24	203	6.02e-36	129
Msa1045780	AT5G06860.1	36.517	178	62	6	92	220	155	330	8.69e-19	83.6
Msa1045780	AT3G12145.1	37.688	199	114	6	7	204	1	190	1.86e-31	117
Msa1045780	AT3G12145.1	32.203	177	69	5	92	219	151	325	3.35e-16	76.3
Msa1045780	AT5G06870.1	36.649	191	93	5	33	197	24	212	1.74e-27	107
Msa1045780	AT5G06870.1	33.562	146	90	6	77	220	190	330	7.01e-14	69.7
Msa1045780	AT2G26380.1	32.124	193	123	3	11	197	6	196	3.38e-24	100
Msa1045780	AT2G26380.1	40.741	108	62	2	89	195	209	315	2.31e-14	71.6
Msa1045780	AT2G26380.1	37.736	106	65	1	92	197	140	244	2.98e-12	65.5
Msa1045780	AT2G26380.1	34.821	112	71	2	92	202	188	298	2.97e-11	62.8

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Find 78 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAGACCATTTCGG+TGG	0.683039	7_2:+5925992	Msa1045780:CDS
AAACTCAGCTGGAAGCGTAC+CGG	0.555360	7_2:-5926140	None:intergenic
AAAGGAAGAGGAGTGTTAAG+TGG	0.490290	7_2:-5925895	None:intergenic
AAGACCCCAGCCACGGCTGA+TGG	0.512147	7_2:-5926116	None:intergenic
AATGAGAGCATGCTAAGATA+AGG	0.508287	7_2:-5926172	None:intergenic
ACAATACAGAATGTTGTGAC+TGG	0.560322	7_2:+5926044	Msa1045780:CDS
ACCGTTGTCACCATCAGCCG+TGG	0.565016	7_2:+5926106	Msa1045780:CDS
ACGCTTCAATTTGCCCAGAT+AGG	0.439825	7_2:-5926302	None:intergenic
ACGGTGACTCGGCCGGGATA+CGG	0.512320	7_2:-5926088	None:intergenic
ACTCCAAAGACTACAAAATC+TGG	0.396555	7_2:+5926243	Msa1045780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTCTAACAACAAGTTATC+TGG	+	chr7_2:5926340-5926359	Msa1045780:CDS	30.0%
CTCAAAATCAGAGACCATTT+CGG	+	chr7_2:5925989-5926008	Msa1045780:CDS	35.0%
ACAATACAGAATGTTGTGAC+TGG	+	chr7_2:5926044-5926063	Msa1045780:CDS	35.0%
TTATCTTAGCATGCTCTCAT+TGG	+	chr7_2:5926174-5926193	Msa1045780:CDS	35.0%
ACTCCAAAGACTACAAAATC+TGG	+	chr7_2:5926243-5926262	Msa1045780:CDS	35.0%
AGACTACAAAATCTGGATCT+TGG	+	chr7_2:5926250-5926269	Msa1045780:CDS	35.0%
TAAATTGCGAAAGAGACTGT+AGG	-	chr7_2:5926390-5926409	None:intergenic	35.0%
AGTACATGGAAGAAAGGAAG+AGG	-	chr7_2:5925910-5925929	None:intergenic	40.0%
AAAATCAGAGACCATTTCGG+TGG	+	chr7_2:5925992-5926011	Msa1045780:CDS	40.0%
TTCAATTTGCCCAGATAGGA+GGG	-	chr7_2:5926301-5926320	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	5925863	5926525	5925863	ID=Msa1045780;Name=Msa1045780
chr7_2	mRNA	5925863	5926525	5925863	ID=Msa1045780-mRNA-1;Parent=Msa1045780;Name=Msa1045780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|220
chr7_2	exon	5925863	5926525	5925863	ID=Msa1045780-mRNA-1:exon:1286;Parent=Msa1045780-mRNA-1
chr7_2	CDS	5925863	5926525	5925863	ID=Msa1045780-mRNA-1:cds;Parent=Msa1045780-mRNA-1

Gene Sequence

>Msa1045780

ATGAAGACTCCTCCAACCATGCTTCTCCTACTCCACTTAACACTCCTCTTCCTTTCTTCCATGTACTTCTCCACATCAAACGCTGATGACGACTTCTTCTGCAATGCCAATGACAAAGCCACCCTCCTCAAAATCAGAGACCATTTCGGTGGCCCCAAAGGTCGCCTCGACGACTGGGACAACAATACAGAATGTTGTGACTGGAACTTCGTTGGTTGCGGCAAACCGTATCCCGGCCGAGTCACCGTTGTCACCATCAGCCGTGGCTGGGGTCTTTCCGGTACGCTTCCAGCTGAGTTTGGCGACCTCCCTTATCTTAGCATGCTCTCATTGGCCGAAATGCCGAAAGTAACTGGGACAATCCCTAACTCTTTCAGCAAACTCCAAAGACTACAAAATCTGGATCTTGGCTCCAACAGCCTTAGTGGGCCAATCCCCTCCTATCTGGGCAAATTGAAGCGTCTAAAGGAGATTGATTTGTCTAACAACAAGTTATCTGGTGCAATTCCGGCGTCGCTCGGCAACCTACAGTCTCTTTCGCAATTTAATGTTAGCTTTAACCAGCTGTGTGGTGCAATTCCTGCTGGGTTGAAGAAGTTTAATAAGAATGTGTTTGAGCATAATAAATGCCTCTGTGGTGCTCCTTTAGCACCTTGCAAGTAA

Protein sequence

>Msa1045780

MKTPPTMLLLLHLTLLFLSSMYFSTSNADDDFFCNANDKATLLKIRDHFGGPKGRLDDWDNNTECCDWNFVGCGKPYPGRVTVVTISRGWGLSGTLPAEFGDLPYLSMLSLAEMPKVTGTIPNSFSKLQRLQNLDLGSNSLSGPIPSYLGKLKRLKEIDLSNNKLSGAIPASLGNLQSLSQFNVSFNQLCGAIPAGLKKFNKNVFEHNKCLCGAPLAPCK*