Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074910 | AES81405.1 | 83.568 | 213 | 22 | 3 | 31 | 230 | 48 | 260 | 1.41e-122 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074910 | sp|A3BDI8|SAP8_ORYSJ | 59.649 | 171 | 64 | 2 | 63 | 230 | 3 | 171 | 1.42e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074910 | G7KUE5 | 83.568 | 213 | 22 | 3 | 31 | 230 | 48 | 260 | 6.71e-123 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa1074910 | -0.830283 | 3.204549e-55 | -8.615850e-47 |
| Msa0106810 | Msa1074910 | -0.814479 | 1.508422e-51 | -8.615850e-47 |
| Msa0646180 | Msa1074910 | -0.810585 | 1.071606e-50 | -8.615850e-47 |
| Msa0722660 | Msa1074910 | -0.814537 | 1.465085e-51 | -8.615850e-47 |
| Msa0153290 | Msa1074910 | -0.815631 | 8.375422e-52 | -8.615850e-47 |
| Msa0172110 | Msa1074910 | -0.800649 | 1.305090e-48 | -8.615850e-47 |
| Msa0192890 | Msa1074910 | 0.822454 | 2.348168e-53 | -8.615850e-47 |
| Msa0196530 | Msa1074910 | 0.837588 | 4.757469e-57 | -8.615850e-47 |
| Msa0225370 | Msa1074910 | -0.803427 | 3.504167e-49 | -8.615850e-47 |
| Msa0238420 | Msa1074910 | 0.821574 | 3.755847e-53 | -8.615850e-47 |
| Msa0384220 | Msa1074910 | 0.810923 | 9.056030e-51 | -8.615850e-47 |
| Msa0387180 | Msa1074910 | 0.837146 | 6.174236e-57 | -8.615850e-47 |
| Msa0432260 | Msa1074910 | -0.808671 | 2.762067e-50 | -8.615850e-47 |
| Msa0463890 | Msa1074910 | 0.800158 | 1.643168e-48 | -8.615850e-47 |
| Msa0468050 | Msa1074910 | 0.819021 | 1.445177e-52 | -8.615850e-47 |
| Msa0482360 | Msa1074910 | 0.806089 | 9.743313e-50 | -8.615850e-47 |
| Msa1034870 | Msa1074910 | 0.919493 | 4.202557e-87 | -8.615850e-47 |
| Msa1055710 | Msa1074910 | -0.829250 | 5.718482e-55 | -8.615850e-47 |
| Msa1074910 | Msa1115760 | 0.813806 | 2.124528e-51 | -8.615850e-47 |
| Msa1074910 | Msa1129130 | -0.806895 | 6.585920e-50 | -8.615850e-47 |
| Msa1074910 | Msa1129470 | -0.813069 | 3.084686e-51 | -8.615850e-47 |
| Msa1074910 | Msa1162220 | 0.818967 | 1.486741e-52 | -8.615850e-47 |
| Msa1074910 | Msa1192790 | -0.804372 | 2.229978e-49 | -8.615850e-47 |
| Msa1074910 | Msa1203090 | -0.821823 | 3.288839e-53 | -8.615850e-47 |
| Msa1074910 | Msa1207000 | 0.825718 | 4.024189e-54 | -8.615850e-47 |
| Msa1074910 | Msa1207090 | 0.811084 | 8.355333e-51 | -8.615850e-47 |
| Msa1074910 | Msa1257170 | 0.848957 | 4.400341e-60 | -8.615850e-47 |
| Msa1074910 | Msa1258600 | 0.834211 | 3.416457e-56 | -8.615850e-47 |
| Msa1074910 | Msa1298440 | 0.830520 | 2.804305e-55 | -8.615850e-47 |
| Msa1074910 | Msa1302120 | 0.824618 | 7.320827e-54 | -8.615850e-47 |
| Msa1074910 | Msa1327400 | -0.809677 | 1.681305e-50 | -8.615850e-47 |
| Msa1074910 | Msa1327420 | -0.802939 | 4.421876e-49 | -8.615850e-47 |
| Msa1074910 | Msa1359880 | -0.806932 | 6.467900e-50 | -8.615850e-47 |
| Msa1074910 | Msa1400940 | 0.831098 | 2.023563e-55 | -8.615850e-47 |
| Msa0313680 | Msa1074910 | 0.821825 | 3.286633e-53 | -8.615850e-47 |
| Msa0315820 | Msa1074910 | -0.805124 | 1.552978e-49 | -8.615850e-47 |
| Msa0341860 | Msa1074910 | -0.801421 | 9.077271e-49 | -8.615850e-47 |
| Msa0483160 | Msa1074910 | -0.815658 | 8.259114e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074910 | MtrunA17_Chr7g0258071 | 83.568 | 213 | 22 | 3 | 31 | 230 | 48 | 260 | 1.29e-126 | 358 |
| Msa1074910 | MtrunA17_Chr1g0173971 | 72.093 | 172 | 44 | 2 | 60 | 230 | 1 | 169 | 1.77e-88 | 258 |
| Msa1074910 | MtrunA17_Chr2g0328941 | 60.000 | 170 | 66 | 2 | 63 | 230 | 3 | 172 | 9.29e-72 | 216 |
| Msa1074910 | MtrunA17_Chr4g0032621 | 55.676 | 185 | 65 | 3 | 63 | 230 | 3 | 187 | 3.34e-68 | 207 |
| Msa1074910 | MtrunA17_Chr7g0266121 | 40.341 | 176 | 86 | 3 | 64 | 230 | 3 | 168 | 2.13e-42 | 141 |
| Msa1074910 | MtrunA17_Chr2g0321261 | 41.401 | 157 | 76 | 3 | 74 | 230 | 14 | 154 | 1.27e-37 | 129 |
| Msa1074910 | MtrunA17_Chr1g0178851 | 42.604 | 169 | 80 | 2 | 64 | 230 | 3 | 156 | 2.49e-37 | 128 |
| Msa1074910 | MtrunA17_Chr4g0026561 | 39.535 | 172 | 95 | 4 | 64 | 230 | 3 | 170 | 5.02e-36 | 125 |
| Msa1074910 | MtrunA17_Chr1g0203591 | 36.774 | 155 | 79 | 4 | 74 | 228 | 3 | 138 | 1.34e-26 | 100 |
| Msa1074910 | MtrunA17_Chr8g0351971 | 61.765 | 68 | 26 | 0 | 163 | 230 | 173 | 240 | 3.04e-26 | 102 |
| Msa1074910 | MtrunA17_Chr3g0087831 | 37.419 | 155 | 78 | 2 | 76 | 230 | 28 | 163 | 9.47e-26 | 98.6 |
| Msa1074910 | MtrunA17_Chr7g0274001 | 33.766 | 154 | 76 | 3 | 74 | 227 | 3 | 130 | 3.85e-24 | 93.6 |
| Msa1074910 | MtrunA17_Chr2g0306911 | 30.573 | 157 | 76 | 3 | 72 | 228 | 2 | 125 | 2.77e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074910 | AT1G51200.4 | 53.073 | 179 | 65 | 4 | 63 | 230 | 3 | 173 | 9.43e-51 | 163 |
| Msa1074910 | AT1G51200.1 | 53.073 | 179 | 65 | 4 | 63 | 230 | 3 | 173 | 9.43e-51 | 163 |
| Msa1074910 | AT1G51200.3 | 53.073 | 179 | 65 | 4 | 63 | 230 | 3 | 173 | 9.43e-51 | 163 |
| Msa1074910 | AT1G51200.2 | 53.073 | 179 | 65 | 4 | 63 | 230 | 3 | 173 | 9.43e-51 | 163 |
| Msa1074910 | AT2G36320.1 | 44.048 | 168 | 84 | 2 | 64 | 230 | 3 | 161 | 6.39e-44 | 145 |
| Msa1074910 | AT3G52800.2 | 42.690 | 171 | 91 | 3 | 64 | 230 | 3 | 170 | 2.54e-38 | 131 |
| Msa1074910 | AT3G52800.1 | 42.690 | 171 | 91 | 3 | 64 | 230 | 3 | 170 | 2.54e-38 | 131 |
| Msa1074910 | AT2G27580.2 | 37.500 | 168 | 84 | 3 | 72 | 230 | 8 | 163 | 8.05e-37 | 127 |
| Msa1074910 | AT2G27580.1 | 37.500 | 168 | 84 | 3 | 72 | 230 | 8 | 163 | 8.05e-37 | 127 |
| Msa1074910 | AT1G12440.2 | 38.788 | 165 | 89 | 2 | 70 | 230 | 12 | 168 | 1.28e-35 | 124 |
| Msa1074910 | AT1G12440.1 | 38.788 | 165 | 89 | 2 | 70 | 230 | 12 | 168 | 1.28e-35 | 124 |
| Msa1074910 | AT1G12440.3 | 38.788 | 165 | 89 | 2 | 70 | 230 | 12 | 168 | 1.28e-35 | 124 |
| Msa1074910 | AT4G12040.2 | 36.747 | 166 | 96 | 3 | 71 | 230 | 13 | 175 | 1.61e-35 | 124 |
| Msa1074910 | AT4G12040.1 | 36.747 | 166 | 96 | 3 | 71 | 230 | 13 | 175 | 1.61e-35 | 124 |
| Msa1074910 | AT4G22820.1 | 38.750 | 160 | 93 | 3 | 74 | 230 | 19 | 176 | 1.16e-33 | 119 |
| Msa1074910 | AT4G22820.2 | 38.750 | 160 | 93 | 3 | 74 | 230 | 19 | 176 | 1.16e-33 | 119 |
| Msa1074910 | AT3G12630.1 | 38.926 | 149 | 72 | 3 | 82 | 230 | 31 | 160 | 5.82e-30 | 109 |
| Msa1074910 | AT4G14225.1 | 35.032 | 157 | 66 | 4 | 74 | 230 | 5 | 125 | 4.02e-25 | 96.3 |
| Msa1074910 | AT4G25380.1 | 31.013 | 158 | 72 | 3 | 75 | 230 | 8 | 130 | 8.22e-24 | 92.8 |
Find 56 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTAATCCAACACGTTTC+CGG | 0.268508 | 7_2:-72980163 | None:intergenic |
| AGTTTATCCGCCTTAATTAC+TGG | 0.271098 | 7_2:-72980299 | None:intergenic |
| CGGAAACGTGTTGGATTAAC+TGG | 0.273573 | 7_2:+72980164 | Msa1074910:CDS |
| TGAATCCAACCCAGTAATTA+AGG | 0.350084 | 7_2:+72980289 | Msa1074910:CDS |
| CAATTATTAACGCACAGAAT+TGG | 0.359796 | 7_2:-72979861 | None:intergenic |
| ATCTCCATCTCATTAGAGAT+TGG | 0.379259 | 7_2:-72980104 | None:intergenic |
| CCAGCAGATGCACTACTTGC+CGG | 0.396434 | 7_2:+72980144 | Msa1074910:CDS |
| GAGAACAGTATTAGAGTGTC+AGG | 0.399626 | 7_2:+72978721 | Msa1074910:CDS |
| GAATTGGACGTTCAGGTGTC+TGG | 0.402600 | 7_2:-72979845 | None:intergenic |
| AAATCGCTCACCTGGGTGGC+AGG | 0.411596 | 7_2:-72978754 | None:intergenic |
| GTTAATAATTGTGGTTTCTT+CGG | 0.432078 | 7_2:+72979873 | Msa1074910:CDS |
| GGCTGAGGTGTCTTGTCTGC+AGG | 0.433130 | 7_2:+72979775 | Msa1074910:CDS |
| GCATCTGCTGGGACCAGTCT+TGG | 0.436198 | 7_2:-72980132 | None:intergenic |
| CCGGCAAGTAGTGCATCTGC+TGG | 0.450708 | 7_2:-72980144 | None:intergenic |
| ACGCACAGAATTGGACGTTC+AGG | 0.451830 | 7_2:-72979852 | None:intergenic |
| CCAGCAGTTCTATAATCAAA+AGG | 0.452505 | 7_2:-72980251 | None:intergenic |
| ATCCGCCTTAATTACTGGGT+TGG | 0.457754 | 7_2:-72980294 | None:intergenic |
| TTCCAGCGGCAATGGAAAGC+TGG | 0.468107 | 7_2:+72980004 | Msa1074910:CDS |
| AGCCAGCTTTCCATTGCCGC+TGG | 0.484638 | 7_2:-72980006 | None:intergenic |
| AATGGCAATTCCAGCGGCAA+TGG | 0.485507 | 7_2:+72979996 | Msa1074910:CDS |
| GTTTATCCGCCTTAATTACT+GGG | 0.487636 | 7_2:-72980298 | None:intergenic |
| CATGTGTTCCAAGTGTTACA+AGG | 0.489662 | 7_2:+72979914 | Msa1074910:CDS |
| ACACTTGGAACACATGTTCA+TGG | 0.501814 | 7_2:-72979907 | None:intergenic |
| TACTGGGTTGGATTCAGCTA+TGG | 0.503220 | 7_2:-72980282 | None:intergenic |
| ATCGGTGAACCCTGCCACCC+AGG | 0.508830 | 7_2:+72978744 | Msa1074910:CDS |
| AATGGAGTCTCATGATGAGA+TGG | 0.509058 | 7_2:+72979818 | Msa1074910:CDS |
| ATAATTGTGGTTTCTTCGGA+AGG | 0.510786 | 7_2:+72979877 | Msa1074910:CDS |
| ATTCTGTGCGTTAATAATTG+TGG | 0.511147 | 7_2:+72979864 | Msa1074910:CDS |
| TTTATATCCTTGAGAGGCTG+AGG | 0.519735 | 7_2:+72979760 | Msa1074910:CDS |
| CAGCAGTTCTATAATCAAAA+GGG | 0.523968 | 7_2:-72980250 | None:intergenic |
| CAGTGTGTCCTTGTAACACT+TGG | 0.534504 | 7_2:-72979922 | None:intergenic |
| AGCGATGCATTGAGCAAAAG+AGG | 0.535711 | 7_2:-72980208 | None:intergenic |
| TCAGTTGAAAACATCGTGAA+TGG | 0.542840 | 7_2:+72979978 | Msa1074910:CDS |
| CAAGGACACACTGCTGAAGC+AGG | 0.543963 | 7_2:+72979932 | Msa1074910:CDS |
| ATGGAGATGAAAGCCAAGAC+TGG | 0.550708 | 7_2:+72980119 | Msa1074910:CDS |
| AAATCCAATCTCTAATGAGA+TGG | 0.551991 | 7_2:+72980100 | Msa1074910:CDS |
| CACACTGCTGAAGCAGGAGC+AGG | 0.565527 | 7_2:+72979938 | Msa1074910:CDS |
| CGGCAAGTAGTGCATCTGCT+GGG | 0.567957 | 7_2:-72980143 | None:intergenic |
| ACTGGTTTCAGCTGCAAATG+TGG | 0.568603 | 7_2:+72980182 | Msa1074910:CDS |
| TTATAGAACTGCTGGTCAGA+AGG | 0.572119 | 7_2:+72980259 | Msa1074910:CDS |
| TGTATGTTTATATCCTTGAG+AGG | 0.574257 | 7_2:+72979754 | Msa1074910:CDS |
| GTTGTACTGTCATAGAGTAA+TGG | 0.575926 | 7_2:+72979800 | Msa1074910:CDS |
| CAAGACACCTCAGCCTCTCA+AGG | 0.582225 | 7_2:-72979767 | None:intergenic |
| GAAAGCTGGCTGTGACCGCA+AGG | 0.589655 | 7_2:+72980018 | Msa1074910:CDS |
| ACTACTTGCCGGAAACGTGT+TGG | 0.596630 | 7_2:+72980155 | Msa1074910:CDS |
| TGAGGTGTCTTGTCTGCAGG+TGG | 0.597436 | 7_2:+72979778 | Msa1074910:CDS |
| AATCGCTCACCTGGGTGGCA+GGG | 0.598054 | 7_2:-72978753 | None:intergenic |
| TAATTGTGGTTTCTTCGGAA+GGG | 0.609724 | 7_2:+72979878 | Msa1074910:CDS |
| CAGTATTAGAGTGTCAGGAT+CGG | 0.628028 | 7_2:+72978726 | Msa1074910:CDS |
| ATGGAGTCTCATGATGAGAT+GGG | 0.645569 | 7_2:+72979819 | Msa1074910:CDS |
| ATCGTGAATGGCAATTCCAG+CGG | 0.654212 | 7_2:+72979990 | Msa1074910:CDS |
| TCGCACATCAACAGTCCTTG+CGG | 0.667104 | 7_2:-72980033 | None:intergenic |
| ATAGAAATCGCTCACCTGGG+TGG | 0.675612 | 7_2:-72978758 | None:intergenic |
| GCTCAATACAGTGTCTCCCG+AGG | 0.676644 | 7_2:+72980070 | Msa1074910:CDS |
| ATCCAACCCAGTAATTAAGG+CGG | 0.681546 | 7_2:+72980292 | Msa1074910:CDS |
| TGATGTGCGAGTTGAAAGTG+TGG | 0.723729 | 7_2:+72980046 | Msa1074910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATGAATTATACAA+AGG | + | chr7_2:72978226-72978245 | Msa1074910:intron | 10.0% |
| !! | AAATCAAAATTTAAAAACAA+AGG | - | chr7_2:72978833-72978852 | None:intergenic | 10.0% |
| !!! | TTTTGGGTTAATTTTTTTTA+GGG | - | chr7_2:72978356-72978375 | None:intergenic | 15.0% |
| !!! | ATTTTGGGTTAATTTTTTTT+AGG | - | chr7_2:72978357-72978376 | None:intergenic | 15.0% |
| !!! | TAAATTTATGTAGTTGTTTT+TGG | + | chr7_2:72979716-72979735 | Msa1074910:intron | 15.0% |
| !! | AAGATTATGTTAAAAAGCAA+GGG | - | chr7_2:72977955-72977974 | None:intergenic | 20.0% |
| !! | AAAGATTATGTTAAAAAGCA+AGG | - | chr7_2:72977956-72977975 | None:intergenic | 20.0% |
| !! | TAGTGAATGAAAATTGTATA+GGG | - | chr7_2:72978004-72978023 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGAAATTTTTTAG+AGG | + | chr7_2:72978276-72978295 | Msa1074910:intron | 20.0% |
| !! | AAAATTAACCCAAAATAAAG+TGG | + | chr7_2:72978361-72978380 | Msa1074910:intron | 20.0% |
| !!! | AATTTTGTCCACTTTATTTT+GGG | - | chr7_2:72978372-72978391 | None:intergenic | 20.0% |
| !!! | AGATTGTTATTTGTTAAGTT+CGG | + | chr7_2:72978975-72978994 | Msa1074910:intron | 20.0% |
| !! | TAATGTGTTGGATATAAATA+CGG | + | chr7_2:72979252-72979271 | Msa1074910:intron | 20.0% |
| !! | TTGATCAAGGATTTAAATTA+TGG | + | chr7_2:72979364-72979383 | Msa1074910:intron | 20.0% |
| !! | AAGGATTTAAATTATGGTTA+TGG | + | chr7_2:72979370-72979389 | Msa1074910:intron | 20.0% |
| !!! | TTAAGTAATCTAAAGTGAAA+AGG | + | chr7_2:72979639-72979658 | Msa1074910:intron | 20.0% |
| !!! | TAAGTAATCTAAAGTGAAAA+GGG | + | chr7_2:72979640-72979659 | Msa1074910:intron | 20.0% |
| ! | GCTTGATATTATCCAATAAT+GGG | - | chr7_2:72977883-72977902 | None:intergenic | 25.0% |
| ! | AGCTTGATATTATCCAATAA+TGG | - | chr7_2:72977884-72977903 | None:intergenic | 25.0% |
| ! | ACTAAATACATCTTGATTAG+TGG | + | chr7_2:72977919-72977938 | Msa1074910:intron | 25.0% |
| ! | AGTGAATGAAAATTGTATAG+GGG | - | chr7_2:72978003-72978022 | None:intergenic | 25.0% |
| ! | GTAGTGAATGAAAATTGTAT+AGG | - | chr7_2:72978005-72978024 | None:intergenic | 25.0% |
| !! | CAATTTTCATTCACTACTTT+TGG | + | chr7_2:72978008-72978027 | Msa1074910:intron | 25.0% |
| !!! | CAATTTTGTCCACTTTATTT+TGG | - | chr7_2:72978373-72978392 | None:intergenic | 25.0% |
| ! | TTGAGTGTTTGTTTATTCAT+TGG | + | chr7_2:72979064-72979083 | Msa1074910:intron | 25.0% |
| !!! | TTATTCATTGGTTGGAATTT+TGG | + | chr7_2:72979076-72979095 | Msa1074910:intron | 25.0% |
| ! | AAGTGAGTAAAGATAAACAT+TGG | - | chr7_2:72979112-72979131 | None:intergenic | 25.0% |
| !! | AATCTCTAGATATTTCTGAA+TGG | - | chr7_2:72979233-72979252 | None:intergenic | 25.0% |
| ! | ATATCTAGAGATTAATGTGT+TGG | + | chr7_2:72979240-72979259 | Msa1074910:intron | 25.0% |
| ! | ACTTTAGATTACTTAAACAC+CGG | - | chr7_2:72979635-72979654 | None:intergenic | 25.0% |
| ! | GTTAATAATTGTGGTTTCTT+CGG | + | chr7_2:72979873-72979892 | Msa1074910:CDS | 25.0% |
| ATGGCAAAAAAAATTGGGTT+AGG | + | chr7_2:72977836-72977855 | Msa1074910:intron | 30.0% | |
| !!! | TGGGTTAATTTTTTTTAGGG+AGG | - | chr7_2:72978353-72978372 | None:intergenic | 30.0% |
| TGTAATAGAAAGTGACAAGA+AGG | + | chr7_2:72978391-72978410 | Msa1074910:intron | 30.0% | |
| GTAATAGAAAGTGACAAGAA+GGG | + | chr7_2:72978392-72978411 | Msa1074910:intron | 30.0% | |
| ! | AAAGAAAAAACAACCGACTT+TGG | + | chr7_2:72978424-72978443 | Msa1074910:intron | 30.0% |
| ! | AAGAAAAAACAACCGACTTT+GGG | + | chr7_2:72978425-72978444 | Msa1074910:intron | 30.0% |
| ! | TATTATCTCTCTTCGTTTTG+AGG | + | chr7_2:72978600-72978619 | Msa1074910:intron | 30.0% |
| ! | TCTCTCTCTAATTCTTTTCT+GGG | + | chr7_2:72978643-72978662 | Msa1074910:intron | 30.0% |
| ! | TTTCTTCTTTCTGTTTTGCT+TGG | + | chr7_2:72978780-72978799 | Msa1074910:intron | 30.0% |
| TTCAAAAACCCAACAAGAAA+GGG | - | chr7_2:72978875-72978894 | None:intergenic | 30.0% | |
| ATTCAAAAACCCAACAAGAA+AGG | - | chr7_2:72978876-72978895 | None:intergenic | 30.0% | |
| ! | TTGGGTTTTTGAATAGCTAA+TGG | + | chr7_2:72978882-72978901 | Msa1074910:intron | 30.0% |
| !!! | GTGATTTTTTGTTGTGTGAT+TGG | + | chr7_2:72978952-72978971 | Msa1074910:intron | 30.0% |
| GTGTTTGTTTATTCATTGGT+TGG | + | chr7_2:72979068-72979087 | Msa1074910:intron | 30.0% | |
| ATTGTGCATATCTTGATAGA+AGG | + | chr7_2:72979186-72979205 | Msa1074910:intron | 30.0% | |
| !!! | TTCTGAATGGTTAGTTTTTC+CGG | - | chr7_2:72979220-72979239 | None:intergenic | 30.0% |
| TCTTGCTGCTAATTTCTAAA+CGG | + | chr7_2:72979553-72979572 | Msa1074910:intron | 30.0% | |
| !! | TGTTATCGATTGAACTTTTG+TGG | + | chr7_2:72979599-72979618 | Msa1074910:intron | 30.0% |
| TGTATGTTTATATCCTTGAG+AGG | + | chr7_2:72979754-72979773 | Msa1074910:CDS | 30.0% | |
| CAATTATTAACGCACAGAAT+TGG | - | chr7_2:72979864-72979883 | None:intergenic | 30.0% | |
| ATTCTGTGCGTTAATAATTG+TGG | + | chr7_2:72979864-72979883 | Msa1074910:CDS | 30.0% | |
| ! | TCATTAGAGATTGGATTTTC+TGG | - | chr7_2:72980098-72980117 | None:intergenic | 30.0% |
| AAATCCAATCTCTAATGAGA+TGG | + | chr7_2:72980100-72980119 | Msa1074910:CDS | 30.0% | |
| CAGCAGTTCTATAATCAAAA+GGG | - | chr7_2:72980253-72980272 | None:intergenic | 30.0% | |
| TATGTTAAAAAGCAAGGGAG+TGG | - | chr7_2:72977950-72977969 | None:intergenic | 35.0% | |
| GTATAGGGGTTAAAAGTTGA+AGG | - | chr7_2:72977989-72978008 | None:intergenic | 35.0% | |
| GAATTATACAAAGGCGAAGA+TGG | + | chr7_2:72978235-72978254 | Msa1074910:intron | 35.0% | |
| ! | GCGAAGATGGAAAACTTTTA+AGG | + | chr7_2:72978248-72978267 | Msa1074910:intron | 35.0% |
| ATTTCATCTTAGCCCAAAGT+CGG | - | chr7_2:72978440-72978459 | None:intergenic | 35.0% | |
| ! | CTCTCTCTCTAATTCTTTTC+TGG | + | chr7_2:72978642-72978661 | Msa1074910:intron | 35.0% |
| !!! | TTTTTTCCACCCTTTCTTGT+TGG | + | chr7_2:72978863-72978882 | Msa1074910:intron | 35.0% |
| ! | TTTTTCCACCCTTTCTTGTT+GGG | + | chr7_2:72978864-72978883 | Msa1074910:intron | 35.0% |
| TGTACATTAGAGATGGATGA+TGG | + | chr7_2:72978999-72979018 | Msa1074910:intron | 35.0% | |
| GTACATTAGAGATGGATGAT+GGG | + | chr7_2:72979000-72979019 | Msa1074910:intron | 35.0% | |
| AATAGCATTCCTTCAAGCTA+TGG | - | chr7_2:72979138-72979157 | None:intergenic | 35.0% | |
| !!! | TCTGAATGGTTAGTTTTTCC+GGG | - | chr7_2:72979219-72979238 | None:intergenic | 35.0% |
| TGTTGTGCATAACTTGATCA+AGG | + | chr7_2:72979351-72979370 | Msa1074910:intron | 35.0% | |
| CAATTCTCCGCATTATCAAA+GGG | - | chr7_2:72979407-72979426 | None:intergenic | 35.0% | |
| CATCAGAAACTTTGATGTTG+AGG | + | chr7_2:72979452-72979471 | Msa1074910:intron | 35.0% | |
| ! | GCTCATTGTTGACTATTGTA+AGG | + | chr7_2:72979575-72979594 | Msa1074910:intron | 35.0% |
| GTTGTACTGTCATAGAGTAA+TGG | + | chr7_2:72979800-72979819 | Msa1074910:CDS | 35.0% | |
| ATAATTGTGGTTTCTTCGGA+AGG | + | chr7_2:72979877-72979896 | Msa1074910:CDS | 35.0% | |
| TAATTGTGGTTTCTTCGGAA+GGG | + | chr7_2:72979878-72979897 | Msa1074910:CDS | 35.0% | |
| TCAGTTGAAAACATCGTGAA+TGG | + | chr7_2:72979978-72979997 | Msa1074910:CDS | 35.0% | |
| ATCTCCATCTCATTAGAGAT+TGG | - | chr7_2:72980107-72980126 | None:intergenic | 35.0% | |
| CCAGCAGTTCTATAATCAAA+AGG | - | chr7_2:72980254-72980273 | None:intergenic | 35.0% | |
| !! | CCTTTTGATTATAGAACTGC+TGG | + | chr7_2:72980251-72980270 | Msa1074910:CDS | 35.0% |
| TGAATCCAACCCAGTAATTA+AGG | + | chr7_2:72980289-72980308 | Msa1074910:CDS | 35.0% | |
| GTTTATCCGCCTTAATTACT+GGG | - | chr7_2:72980301-72980320 | None:intergenic | 35.0% | |
| AGTTTATCCGCCTTAATTAC+TGG | - | chr7_2:72980302-72980321 | None:intergenic | 35.0% | |
| CGTATCAACAGACCCATTAT+TGG | + | chr7_2:72977868-72977887 | Msa1074910:intron | 40.0% | |
| ! | AAGTGACAAGAAGGGCATAA+TGG | + | chr7_2:72978400-72978419 | Msa1074910:intron | 40.0% |
| !!! | TTTTGATTCGGTGGTCGTAT+TGG | - | chr7_2:72978529-72978548 | None:intergenic | 40.0% |
| !!! | GAGAGAGAAGGGTTTTGATT+CGG | - | chr7_2:72978541-72978560 | None:intergenic | 40.0% |
| ! | GAAAGTACAGAGAGAGAGAA+GGG | - | chr7_2:72978552-72978571 | None:intergenic | 40.0% |
| ! | AGAAAGTACAGAGAGAGAGA+AGG | - | chr7_2:72978553-72978572 | None:intergenic | 40.0% |
| !!! | TCTCTCTTCGTTTTGAGGTT+AGG | + | chr7_2:72978605-72978624 | Msa1074910:intron | 40.0% |
| GAATTAGAGAGAGAGAGAGA+GGG | - | chr7_2:72978637-72978656 | None:intergenic | 40.0% | |
| AGAATTAGAGAGAGAGAGAG+AGG | - | chr7_2:72978638-72978657 | None:intergenic | 40.0% | |
| ! | GAGAACAGTATTAGAGTGTC+AGG | + | chr7_2:72978721-72978740 | Msa1074910:CDS | 40.0% |
| ! | CAGTATTAGAGTGTCAGGAT+CGG | + | chr7_2:72978726-72978745 | Msa1074910:CDS | 40.0% |
| GAAATAGAAATCGCTCACCT+GGG | - | chr7_2:72978764-72978783 | None:intergenic | 40.0% | |
| AGAAATAGAAATCGCTCACC+TGG | - | chr7_2:72978765-72978784 | None:intergenic | 40.0% | |
| AAAAACCCAACAAGAAAGGG+TGG | - | chr7_2:72978872-72978891 | None:intergenic | 40.0% | |
| AGTGACGTGAAATCAGTTTG+TGG | + | chr7_2:72978915-72978934 | Msa1074910:intron | 40.0% | |
| GTGACGTGAAATCAGTTTGT+GGG | + | chr7_2:72978916-72978935 | Msa1074910:intron | 40.0% | |
| GTTCGGTTGTACATTAGAGA+TGG | + | chr7_2:72978992-72979011 | Msa1074910:intron | 40.0% | |
| !! | AGATGGATGATGGGTTTGTT+TGG | + | chr7_2:72979009-72979028 | Msa1074910:intron | 40.0% |
| TCACTTGTACCATAGCTTGA+AGG | + | chr7_2:72979126-72979145 | Msa1074910:intron | 40.0% | |
| GTGCATATCTTGATAGAAGG+AGG | + | chr7_2:72979189-72979208 | Msa1074910:intron | 40.0% | |
| !! | GTCTCTTCCCTTTGATAATG+CGG | + | chr7_2:72979397-72979416 | Msa1074910:intron | 40.0% |
| GCAATTCTCCGCATTATCAA+AGG | - | chr7_2:72979408-72979427 | None:intergenic | 40.0% | |
| AATGCGGAGAATTGCTGAAA+CGG | + | chr7_2:72979413-72979432 | Msa1074910:intron | 40.0% | |
| ! | GCTTTAAGCAACTGCAATTG+AGG | - | chr7_2:72979478-72979497 | None:intergenic | 40.0% |
| TCATGTAGACATCGTGACTA+GGG | - | chr7_2:72979500-72979519 | None:intergenic | 40.0% | |
| ! | CTTTTGTGGTATCTAGTTGC+CGG | + | chr7_2:72979613-72979632 | Msa1074910:intron | 40.0% |
| TTTATATCCTTGAGAGGCTG+AGG | + | chr7_2:72979760-72979779 | Msa1074910:CDS | 40.0% | |
| AATGGAGTCTCATGATGAGA+TGG | + | chr7_2:72979818-72979837 | Msa1074910:CDS | 40.0% | |
| ATGGAGTCTCATGATGAGAT+GGG | + | chr7_2:72979819-72979838 | Msa1074910:CDS | 40.0% | |
| ACACTTGGAACACATGTTCA+TGG | - | chr7_2:72979910-72979929 | None:intergenic | 40.0% | |
| CATGTGTTCCAAGTGTTACA+AGG | + | chr7_2:72979914-72979933 | Msa1074910:CDS | 40.0% | |
| !!! | ATTGGATTTTCTGGAACCTC+GGG | - | chr7_2:72980089-72980108 | None:intergenic | 40.0% |
| !!! | GATTGGATTTTCTGGAACCT+CGG | - | chr7_2:72980090-72980109 | None:intergenic | 40.0% |
| CAGTTAATCCAACACGTTTC+CGG | - | chr7_2:72980166-72980185 | None:intergenic | 40.0% | |
| TTATAGAACTGCTGGTCAGA+AGG | + | chr7_2:72980259-72980278 | Msa1074910:CDS | 40.0% | |
| ATCCAACCCAGTAATTAAGG+CGG | + | chr7_2:72980292-72980311 | Msa1074910:CDS | 40.0% | |
| GGGTCTGTTGATACGACTTT+GGG | - | chr7_2:72977863-72977882 | None:intergenic | 45.0% | |
| TGGGTCTGTTGATACGACTT+TGG | - | chr7_2:72977864-72977883 | None:intergenic | 45.0% | |
| !!! | AGAGAAGGGTTTTGATTCGG+TGG | - | chr7_2:72978538-72978557 | None:intergenic | 45.0% |
| TTGATAGAAGGAGGAAGACC+CGG | + | chr7_2:72979198-72979217 | Msa1074910:intron | 45.0% | |
| TCAAGTCTTACCCACGAAGT+GGG | - | chr7_2:72979322-72979341 | None:intergenic | 45.0% | |
| ATCAAGTCTTACCCACGAAG+TGG | - | chr7_2:72979323-72979342 | None:intergenic | 45.0% | |
| TCTGATGCCTCTACTCAATG+TGG | - | chr7_2:72979439-72979458 | None:intergenic | 45.0% | |
| GTCATGTAGACATCGTGACT+AGG | - | chr7_2:72979501-72979520 | None:intergenic | 45.0% | |
| GTCACGATGTCTACATGACT+TGG | + | chr7_2:72979502-72979521 | Msa1074910:intron | 45.0% | |
| CAGTGTGTCCTTGTAACACT+TGG | - | chr7_2:72979925-72979944 | None:intergenic | 45.0% | |
| ATCGTGAATGGCAATTCCAG+CGG | + | chr7_2:72979990-72980009 | Msa1074910:CDS | 45.0% | |
| ! | TGATGTGCGAGTTGAAAGTG+TGG | + | chr7_2:72980046-72980065 | Msa1074910:CDS | 45.0% |
| ATGGAGATGAAAGCCAAGAC+TGG | + | chr7_2:72980119-72980138 | Msa1074910:CDS | 45.0% | |
| CGGAAACGTGTTGGATTAAC+TGG | + | chr7_2:72980164-72980183 | Msa1074910:CDS | 45.0% | |
| ! | ACTGGTTTCAGCTGCAAATG+TGG | + | chr7_2:72980182-72980201 | Msa1074910:CDS | 45.0% |
| AGCGATGCATTGAGCAAAAG+AGG | - | chr7_2:72980211-72980230 | None:intergenic | 45.0% | |
| ! | TACTGGGTTGGATTCAGCTA+TGG | - | chr7_2:72980285-72980304 | None:intergenic | 45.0% |
| ATCCGCCTTAATTACTGGGT+TGG | - | chr7_2:72980297-72980316 | None:intergenic | 45.0% | |
| !!! | AATATGAAATTTTATATTTT+TGG | - | chr7_2:72978155-72978174 | None:intergenic | 5.0% |
| !!! | ATATTTAATTCTTTTTTTTA+AGG | + | chr7_2:72978170-72978189 | Msa1074910:intron | 5.0% |
| !!! | TATTTAATTCTTTTTTTTAA+GGG | + | chr7_2:72978171-72978190 | Msa1074910:intron | 5.0% |
| ATAGAAATCGCTCACCTGGG+TGG | - | chr7_2:72978761-72978780 | None:intergenic | 50.0% | |
| CAAGTCTTACCCACGAAGTG+GGG | - | chr7_2:72979321-72979340 | None:intergenic | 50.0% | |
| GAAACGGCCACATTGAGTAG+AGG | + | chr7_2:72979429-72979448 | Msa1074910:intron | 50.0% | |
| GAATTGGACGTTCAGGTGTC+TGG | - | chr7_2:72979848-72979867 | None:intergenic | 50.0% | |
| ACGCACAGAATTGGACGTTC+AGG | - | chr7_2:72979855-72979874 | None:intergenic | 50.0% | |
| AATGGCAATTCCAGCGGCAA+TGG | + | chr7_2:72979996-72980015 | Msa1074910:CDS | 50.0% | |
| TCGCACATCAACAGTCCTTG+CGG | - | chr7_2:72980036-72980055 | None:intergenic | 50.0% | |
| ACTACTTGCCGGAAACGTGT+TGG | + | chr7_2:72980155-72980174 | Msa1074910:CDS | 50.0% | |
| !! | ACGAAGTGGGGTTGGCTACA+TGG | - | chr7_2:72979309-72979328 | None:intergenic | 55.0% |
| ATGTAGCCAACCCCACTTCG+TGG | + | chr7_2:72979308-72979327 | Msa1074910:intron | 55.0% | |
| TGTAGCCAACCCCACTTCGT+GGG | + | chr7_2:72979309-72979328 | Msa1074910:intron | 55.0% | |
| TCTTACCCACGAAGTGGGGT+TGG | - | chr7_2:72979317-72979336 | None:intergenic | 55.0% | |
| CAAGACACCTCAGCCTCTCA+AGG | - | chr7_2:72979770-72979789 | None:intergenic | 55.0% | |
| ! | TGAGGTGTCTTGTCTGCAGG+TGG | + | chr7_2:72979778-72979797 | Msa1074910:CDS | 55.0% |
| CAAGGACACACTGCTGAAGC+AGG | + | chr7_2:72979932-72979951 | Msa1074910:CDS | 55.0% | |
| TTCCAGCGGCAATGGAAAGC+TGG | + | chr7_2:72980004-72980023 | Msa1074910:CDS | 55.0% | |
| GCTCAATACAGTGTCTCCCG+AGG | + | chr7_2:72980070-72980089 | Msa1074910:CDS | 55.0% | |
| CGGCAAGTAGTGCATCTGCT+GGG | - | chr7_2:72980146-72980165 | None:intergenic | 55.0% | |
| CCAGCAGATGCACTACTTGC+CGG | + | chr7_2:72980144-72980163 | Msa1074910:CDS | 55.0% | |
| AATCGCTCACCTGGGTGGCA+GGG | - | chr7_2:72978756-72978775 | None:intergenic | 60.0% | |
| AAATCGCTCACCTGGGTGGC+AGG | - | chr7_2:72978757-72978776 | None:intergenic | 60.0% | |
| ! | GGCTGAGGTGTCTTGTCTGC+AGG | + | chr7_2:72979775-72979794 | Msa1074910:CDS | 60.0% |
| CACACTGCTGAAGCAGGAGC+AGG | + | chr7_2:72979938-72979957 | Msa1074910:CDS | 60.0% | |
| AGCCAGCTTTCCATTGCCGC+TGG | - | chr7_2:72980009-72980028 | None:intergenic | 60.0% | |
| GAAAGCTGGCTGTGACCGCA+AGG | + | chr7_2:72980018-72980037 | Msa1074910:CDS | 60.0% | |
| GCATCTGCTGGGACCAGTCT+TGG | - | chr7_2:72980135-72980154 | None:intergenic | 60.0% | |
| CCGGCAAGTAGTGCATCTGC+TGG | - | chr7_2:72980147-72980166 | None:intergenic | 60.0% | |
| ATCGGTGAACCCTGCCACCC+AGG | + | chr7_2:72978744-72978763 | Msa1074910:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 72977836 | 72980334 | 72977836 | ID=Msa1074910;Name=Msa1074910 |
| chr7_2 | mRNA | 72977836 | 72980334 | 72977836 | ID=Msa1074910-mRNA-1;Parent=Msa1074910;Name=Msa1074910-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|0|0|0.75|0|0.5|4|0|230 |
| chr7_2 | exon | 72977836 | 72977852 | 72977836 | ID=Msa1074910-mRNA-1:exon:16871;Parent=Msa1074910-mRNA-1 |
| chr7_2 | exon | 72978702 | 72978765 | 72978702 | ID=Msa1074910-mRNA-1:exon:16872;Parent=Msa1074910-mRNA-1 |
| chr7_2 | exon | 72979629 | 72979634 | 72979629 | ID=Msa1074910-mRNA-1:exon:16873;Parent=Msa1074910-mRNA-1 |
| chr7_2 | exon | 72979729 | 72980334 | 72979729 | ID=Msa1074910-mRNA-1:exon:16874;Parent=Msa1074910-mRNA-1 |
| chr7_2 | CDS | 72977836 | 72977852 | 72977836 | ID=Msa1074910-mRNA-1:cds;Parent=Msa1074910-mRNA-1 |
| chr7_2 | CDS | 72978702 | 72978765 | 72978702 | ID=Msa1074910-mRNA-1:cds;Parent=Msa1074910-mRNA-1 |
| chr7_2 | CDS | 72979629 | 72979634 | 72979629 | ID=Msa1074910-mRNA-1:cds;Parent=Msa1074910-mRNA-1 |
| chr7_2 | CDS | 72979729 | 72980334 | 72979729 | ID=Msa1074910-mRNA-1:cds;Parent=Msa1074910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
