AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129470 MtrunA17_Chr7g0273761 93.261 460 30 1 2 460 374 833 0.0 898
Msa1129470 MtrunA17_Chr7g0273761 90.291 309 30 0 147 455 32 340 0.0 589
Msa1129470 MtrunA17_Chr7g0273781 77.826 460 101 1 1 460 34 492 0.0 765
Msa1129470 MtrunA17_Chr7g0273791 77.462 457 102 1 1 457 1 456 0.0 756
Msa1129470 MtrunA17_Chr5g0433641 76.304 460 109 0 1 460 1 460 0.0 741
Msa1129470 MtrunA17_Chr7g0273731 76.682 446 103 1 1 446 84 528 0.0 729
Msa1129470 MtrunA17_Chr7g0273721 73.261 460 122 1 2 460 3 462 0.0 715
Msa1129470 MtrunA17_Chr1g0165671 57.082 466 178 7 6 460 23 477 0.0 553
Msa1129470 MtrunA17_Chr1g0165661 53.132 463 200 5 6 460 5 458 1.19e-176 503
Msa1129470 MtrunA17_Chr1g0165681 52.573 447 206 6 6 449 5 448 2.31e-174 497
Msa1129470 MtrunA17_Chr1g0191081 54.444 450 191 7 3 446 11 452 1.33e-166 477
Msa1129470 MtrunA17_Chr1g0165711 49.563 458 183 8 6 460 5 417 1.23e-148 430
Msa1129470 MtrunA17_Chr7g0273741 89.189 148 16 0 1 148 1 148 1.83e-91 274
Msa1129470 MtrunA17_Chr7g0273701 75.862 174 42 0 287 460 1 174 2.41e-89 269
Msa1129470 MtrunA17_Chr6g0471381 53.516 256 111 6 198 449 6 257 9.99e-88 269
Msa1129470 MtrunA17_Chr8g0386141 34.419 430 263 10 14 438 11 426 6.57e-79 252
Msa1129470 MtrunA17_Chr3g0132001 32.864 426 270 8 14 436 18 430 1.00e-77 248
Msa1129470 MtrunA17_Chr7g0224391 32.870 432 263 9 14 436 20 433 2.50e-74 240
Msa1129470 MtrunA17_Chr3g0098961 70.270 148 44 0 1 148 4 151 5.03e-69 218
Msa1129470 MtrunA17_Chr6g0471971 47.257 237 98 5 163 396 2 214 6.18e-65 208
Msa1129470 MtrunA17_Chr6g0471371 61.905 147 56 0 6 152 5 151 6.66e-62 199
Msa1129470 MtrunA17_Chr3g0141851 32.405 395 238 13 13 393 14 393 5.21e-58 197
Msa1129470 MtrunA17_Chr1g0165741 60.140 143 57 0 6 148 5 147 1.04e-57 187
Msa1129470 MtrunA17_Chr2g0306321 29.274 427 284 12 25 438 36 457 2.67e-53 185
Msa1129470 MtrunA17_Chr8g0353421 62.903 124 46 0 6 129 5 128 3.51e-52 172
Msa1129470 MtrunA17_Chr4g0027071 30.044 456 265 16 17 439 19 453 2.45e-51 180
Msa1129470 MtrunA17_Chr2g0334001 29.630 432 278 13 17 436 10 427 7.19e-49 172
Msa1129470 MtrunA17_Chr4g0001861 29.612 412 260 12 42 438 34 430 9.61e-49 172
Msa1129470 MtrunA17_Chr8g0371821 27.209 430 290 11 16 436 9 424 1.16e-44 161
Msa1129470 MtrunA17_Chr3g0113821 29.820 389 255 10 17 393 12 394 1.57e-44 161
Msa1129470 MtrunA17_Chr7g0273691 69.072 97 30 0 166 262 1 97 5.14e-44 149
Msa1129470 MtrunA17_Chr6g0471891 44.503 191 78 4 233 421 1 165 1.61e-42 150
Msa1129470 MtrunA17_Chr7g0270771 30.565 301 164 9 6 292 1 270 1.64e-42 151
Msa1129470 MtrunA17_Chr2g0283361 28.605 430 279 14 31 445 25 441 8.00e-42 154
Msa1129470 MtrunA17_Chr3g0087401 27.632 456 272 16 18 434 10 446 5.60e-38 144
Msa1129470 MtrunA17_Chr7g0253501 28.692 474 251 20 16 434 8 449 2.10e-37 142
Msa1129470 MtrunA17_Chr4g0072041 28.169 426 267 12 36 434 39 452 4.34e-37 141
Msa1129470 MtrunA17_Chr4g0054081 26.636 428 280 10 36 438 34 452 7.75e-36 137
Msa1129470 MtrunA17_Chr7g0253531 26.752 471 286 19 16 443 8 462 1.01e-35 137
Msa1129470 MtrunA17_Chr3g0106691 28.244 393 256 11 17 390 63 448 7.03e-32 127
Msa1129470 MtrunA17_Chr6g0470591 26.980 404 258 17 64 441 70 462 5.36e-31 124
Msa1129470 MtrunA17_Chr3g0106661 26.882 465 283 17 17 441 17 464 8.68e-31 124
Msa1129470 MtrunA17_Chr3g0113181 26.761 426 262 13 53 441 54 466 6.19e-30 121
Msa1129470 MtrunA17_Chr1g0165721 54.808 104 45 2 348 449 1 104 6.36e-30 112
Msa1129470 MtrunA17_Chr3g0106721 29.841 315 197 10 43 340 41 348 7.52e-30 121
Msa1129470 MtrunA17_Chr5g0442701 26.974 456 278 17 8 426 8 445 1.67e-29 120
Msa1129470 MtrunA17_Chr7g0253541 24.703 421 255 18 62 439 57 458 2.18e-29 120
Msa1129470 MtrunA17_Chr7g0252731 26.357 387 249 13 14 391 21 380 2.62e-29 119
Msa1129470 MtrunA17_Chr3g0106711 35.789 190 112 4 17 198 17 204 3.18e-29 114
Msa1129470 MtrunA17_Chr5g0442691 26.535 456 280 17 8 426 31 468 9.88e-29 118
Msa1129470 MtrunA17_Chr1g0165731 45.299 117 49 3 163 272 2 110 1.05e-28 109
Msa1129470 MtrunA17_Chr2g0311401 28.053 303 196 9 146 436 5 297 4.47e-28 113
Msa1129470 MtrunA17_Chr3g0095721 25.735 408 264 11 62 442 69 464 1.35e-25 108
Msa1129470 MtrunA17_Chr7g0235531 24.201 438 273 14 17 422 11 421 2.59e-25 107
Msa1129470 MtrunA17_Chr5g0442721 25.728 412 263 13 62 442 64 463 1.02e-24 106
Msa1129470 MtrunA17_Chr4g0004691 32.530 166 106 2 20 185 14 173 1.25e-24 100
Msa1129470 MtrunA17_Chr3g0095731 24.943 437 272 13 43 442 43 460 1.71e-24 105
Msa1129470 MtrunA17_Chr3g0134041 27.854 438 250 22 37 444 44 445 1.81e-24 105
Msa1129470 MtrunA17_Chr3g0106761 28.857 350 199 17 70 390 19 347 9.47e-24 102
Msa1129470 MtrunA17_Chr7g0273681 80.769 52 10 0 92 143 1 52 1.07e-23 93.6
Msa1129470 MtrunA17_Chr3g0134071 28.224 411 242 21 62 444 67 452 4.41e-23 101
Msa1129470 MtrunA17_Chr3g0106741 29.167 336 198 15 79 390 59 378 3.05e-22 99.0
Msa1129470 MtrunA17_Chr8g0354371 25.061 411 262 15 13 404 20 403 7.91e-22 97.4
Msa1129470 MtrunA17_Chr3g0134061 26.207 435 271 19 37 441 42 456 1.41e-21 97.1
Msa1129470 MtrunA17_Chr5g0438701 23.608 449 280 20 16 439 9 419 1.80e-21 96.7
Msa1129470 MtrunA17_Chr5g0408911 26.010 396 247 16 22 394 32 404 1.89e-21 96.7
Msa1129470 MtrunA17_Chr7g0273671 93.023 43 3 0 1 43 1 43 1.36e-20 84.7
Msa1129470 MtrunA17_Chr3g0123061 23.799 437 282 17 16 439 11 409 1.46e-20 93.6
Msa1129470 MtrunA17_Chr3g0125001 26.410 390 235 18 24 390 25 385 2.05e-20 93.2
Msa1129470 MtrunA17_Chr4g0053091 23.762 404 247 13 24 404 32 397 4.30e-20 92.4
Msa1129470 MtrunA17_Chr1g0199561 22.459 423 278 14 16 409 9 410 1.57e-19 90.9
Msa1129470 MtrunA17_Chr3g0134091 27.093 454 260 22 24 443 30 446 2.80e-19 90.1
Msa1129470 MtrunA17_Chr3g0134121 26.174 447 276 21 25 445 31 449 3.65e-19 90.1
Msa1129470 MtrunA17_Chr8g0376891 22.391 460 304 15 16 452 9 438 3.00e-18 87.0
Msa1129470 MtrunA17_Chr3g0134111 25.277 451 274 21 25 445 32 449 6.56e-18 85.9
Msa1129470 MtrunA17_Chr4g0010381 23.650 389 254 15 24 390 25 392 7.36e-18 85.5
Msa1129470 MtrunA17_Chr5g0438681 27.083 240 155 8 16 252 9 231 7.73e-18 85.5
Msa1129470 MtrunA17_Chr8g0361771 23.333 420 273 15 16 409 9 405 7.33e-17 82.8
Msa1129470 MtrunA17_Chr3g0087221 27.019 322 195 13 24 324 25 327 1.80e-16 81.3
Msa1129470 MtrunA17_Chr8g0361781 23.077 403 259 14 16 391 9 387 3.16e-16 80.9
Msa1129470 MtrunA17_Chr4g0010311 23.136 389 257 15 24 390 25 393 3.37e-16 80.5
Msa1129470 MtrunA17_Chr7g0224131 24.873 394 254 17 24 398 25 395 6.15e-16 79.7
Msa1129470 MtrunA17_Chr6g0471981 60.784 51 20 0 101 151 1 51 1.54e-15 71.2
Msa1129470 MtrunA17_Chr8g0376901 22.707 458 303 16 16 451 9 437 2.15e-15 78.2
Msa1129470 MtrunA17_Chr2g0298091 29.787 141 96 1 49 189 50 187 2.04e-14 75.1
Msa1129470 MtrunA17_Chr3g0132831 25.946 185 119 3 20 189 5 186 1.13e-13 72.8
Msa1129470 MtrunA17_Chr2g0311411 32.143 140 91 3 14 153 7 142 1.20e-13 68.6
Msa1129470 MtrunA17_Chr1g0169471 33.019 106 63 2 81 184 2 101 5.94e-13 65.5
Msa1129470 MtrunA17_Chr5g0438721 31.250 144 75 6 62 199 6 131 4.84e-12 63.5
Msa1129470 MtrunA17_Chr6g0456591 29.078 141 89 6 52 185 57 193 7.92e-12 65.1
Msa1129470 MtrunA17_Chr7g0224121 27.389 157 93 7 36 185 39 181 8.03e-12 64.3
Msa1129470 MtrunA17_Chr8g0378151 26.027 146 103 2 39 181 36 179 1.17e-11 66.6
Msa1129470 MtrunA17_Chr1g0163441 23.427 286 158 10 49 306 51 303 4.88e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129470 AT5G17540.1 47.109 467 231 9 3 460 2 461 1.15e-144 422
Msa1129470 AT3G03480.1 44.667 450 231 9 2 443 11 450 3.96e-129 382
Msa1129470 AT3G48720.1 30.664 437 287 9 8 441 7 430 5.14e-71 231
Msa1129470 AT5G41040.2 32.715 431 271 10 14 438 21 438 2.51e-70 230
Msa1129470 AT5G41040.1 32.715 431 271 10 14 438 37 454 3.23e-70 230
Msa1129470 AT5G63560.1 30.942 446 280 10 1 439 1 425 6.21e-67 221
Msa1129470 AT1G27620.1 30.858 431 266 12 14 434 13 421 2.23e-56 193
Msa1129470 AT5G48930.1 29.639 415 258 11 41 438 33 430 1.74e-49 175
Msa1129470 AT1G03390.1 29.792 433 267 13 14 426 26 441 1.11e-48 173
Msa1129470 AT2G19070.1 30.023 433 259 14 36 438 29 447 1.80e-46 167
Msa1129470 AT1G28680.1 27.700 426 284 14 31 441 27 443 3.45e-43 158
Msa1129470 AT5G57840.1 28.784 403 252 12 11 391 4 393 6.11e-41 152
Msa1129470 AT3G62160.1 28.774 424 247 14 6 403 1 395 7.54e-40 149
Msa1129470 AT1G28680.2 29.167 336 226 10 31 360 27 356 2.92e-39 146
Msa1129470 AT2G40230.1 29.040 396 249 15 17 395 12 392 5.15e-39 146
Msa1129470 AT5G07080.1 27.533 454 292 14 8 441 12 448 2.70e-38 145
Msa1129470 AT3G47170.1 25.996 477 291 16 8 442 10 466 3.88e-36 139
Msa1129470 AT1G65450.1 27.456 397 248 13 17 392 26 403 2.68e-33 131
Msa1129470 AT2G25150.1 24.838 463 296 17 16 446 19 461 2.28e-29 120
Msa1129470 AT1G32910.1 26.750 400 251 15 63 437 63 445 2.02e-27 114
Msa1129470 AT1G78990.1 25.301 415 270 12 43 437 45 439 7.07e-27 112
Msa1129470 AT1G31490.1 25.260 384 243 11 31 394 29 388 1.62e-26 111
Msa1129470 AT4G31910.1 26.304 441 285 17 26 438 27 455 2.49e-26 111
Msa1129470 AT2G23510.1 25.686 401 251 15 16 390 19 398 9.36e-25 106
Msa1129470 AT5G16410.1 24.745 392 259 12 65 437 91 465 2.29e-24 105
Msa1129470 AT3G26040.1 23.043 460 301 13 16 453 9 437 1.45e-23 103
Msa1129470 AT4G15390.1 24.550 444 285 18 16 436 14 430 6.19e-23 101
Msa1129470 AT4G15390.2 24.550 444 285 18 16 436 14 430 6.19e-23 101
Msa1129470 AT5G42830.1 27.430 463 268 20 14 442 16 444 9.27e-23 100
Msa1129470 AT1G24430.1 25.476 420 248 15 44 438 41 420 4.23e-22 98.6
Msa1129470 AT5G67150.1 24.500 400 253 15 24 400 30 403 1.45e-20 94.4
Msa1129470 AT1G24420.2 27.438 441 265 17 16 434 11 418 5.03e-20 92.4
Msa1129470 AT1G24420.1 27.438 441 265 17 16 434 11 418 5.03e-20 92.4
Msa1129470 AT5G07860.1 25.874 429 266 14 37 442 45 444 1.09e-19 91.7
Msa1129470 AT2G39980.1 23.684 418 255 12 65 431 62 466 1.65e-18 88.2
Msa1129470 AT3G30280.1 23.023 430 285 16 16 423 12 417 3.37e-18 87.0
Msa1129470 AT5G07870.1 24.622 463 294 15 13 442 16 456 5.99e-18 86.7
Msa1129470 AT5G23940.1 27.094 406 258 18 53 436 54 443 8.77e-18 86.3
Msa1129470 AT3G50300.1 25.000 368 233 15 62 402 56 407 2.11e-17 84.7
Msa1129470 AT5G07850.1 25.990 404 254 19 62 442 67 448 5.67e-17 83.6
Msa1129470 AT5G67160.1 25.840 387 254 14 19 390 15 383 9.46e-17 82.8
Msa1129470 AT3G50270.1 24.485 388 253 14 24 390 30 398 1.09e-16 82.4
Msa1129470 AT5G23970.1 25.313 399 242 16 16 391 9 374 2.44e-16 81.3
Msa1129470 AT5G47950.1 22.558 430 270 17 16 423 12 400 2.27e-14 75.1
Msa1129470 AT3G23840.1 23.887 247 156 6 39 272 36 263 3.00e-14 74.7
Msa1129470 AT4G15400.1 26.067 445 271 22 16 437 11 420 5.89e-12 67.8
Msa1129470 AT4G13840.1 27.333 150 104 2 39 185 38 185 4.62e-11 65.1
Msa1129470 AT5G01210.1 22.637 402 260 15 79 441 76 465 5.89e-11 64.7

Find 126 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCGTTGTAGGTTGATTT+TGG 0.190745 7_3:+81430537 Msa1129460:intron
GGCAGATCTTATGGTTATTA+AGG 0.197032 7_3:-81430816 Msa1129470:CDS
ATCCACTTGCGGGAAGAATT+AGG 0.214730 7_3:-81432638 Msa1129470:CDS
TAAATAAATTTGTTGGCTTA+TGG 0.233111 7_3:-81430461 Msa1129470:three_prime_UTR
TCGCCACTTGATGGATATTA+TGG 0.235022 7_3:-81430965 Msa1129470:CDS
TTAATGCACGTTCAAGGTTT+AGG 0.237256 7_3:-81430997 Msa1129470:CDS
GCATTCTTTGGCAGATCTTA+TGG 0.245241 7_3:-81430825 Msa1129470:CDS
AAGTACTCAGAAGTAAATTT+TGG 0.247575 7_3:-81430737 Msa1129470:CDS
TGATTGCGTTAATTTATAAA+TGG 0.253171 7_3:+81432948 None:intergenic
GCACATTTAAGAACCTTAAC+AGG 0.260011 7_3:+81432687 None:intergenic
AATGAGAGACCAATTTATTA+TGG 0.279508 7_3:-81430426 Msa1129470:three_prime_UTR
AATTTATTTAACTTATCTAA+TGG 0.284970 7_3:+81430474 Msa1129460:intron
TAATGCACGTTCAAGGTTTA+GGG 0.290580 7_3:-81430996 Msa1129470:CDS
AGAAGAATACATGCATTCTT+TGG 0.294021 7_3:-81430837 Msa1129470:CDS
GTGTATGGTGGAGTGGTAAA+AGG 0.301086 7_3:-81430701 Msa1129470:CDS
AACTTATTACCATAATAAAT+TGG 0.316387 7_3:+81430417 Msa1129460:intron
GATAAGTTAAATAAATTTGT+TGG 0.334692 7_3:-81430468 Msa1129470:three_prime_UTR
AAGCTTTGCGGAAACCCTTT+AGG 0.345123 7_3:-81430902 Msa1129470:CDS
ATCATTTGTACTTCTTCATC+TGG 0.345335 7_3:+81431028 None:intergenic
TGAAACAATTCATGAATGTA+TGG 0.347707 7_3:-81431354 Msa1129470:CDS
TAACGATAGATAAATATAAT+AGG 0.351117 7_3:+81432735 None:intergenic
GGGTCTTTCTCTACCATTGA+TGG 0.358439 7_3:+81432708 None:intergenic
GTTTCATTGTGGGCGTAAAC+TGG 0.359119 7_3:-81431405 Msa1129470:CDS
GAACATCGTATATGAGTTCT+TGG 0.374329 7_3:+81432493 None:intergenic
GGATGGGGTGAGGCGGTGTA+TGG 0.375232 7_3:-81430716 Msa1129470:CDS
AAGTTAAAACTTTCCACAAT+AGG 0.375391 7_3:-81430399 Msa1129470:three_prime_UTR
ATGGAACATCACAAACTATA+AGG 0.375658 7_3:+81430493 Msa1129460:intron
TCCACTTGCGGGAAGAATTA+GGG 0.384194 7_3:-81432637 Msa1129470:CDS
GAAGAAAGATTGATGGACTA+TGG 0.390074 7_3:+81431174 None:intergenic
CATGAATGTATGGGCAGAAA+TGG 0.391377 7_3:-81431344 Msa1129470:CDS
CCTGCGGTGGTGACAGCAGC+CGG 0.395402 7_3:+81430926 None:intergenic
GCTAACCATTCGCCACTTGA+TGG 0.395994 7_3:-81430974 Msa1129470:CDS
GATGTAACACTTGATGAATT+TGG 0.399157 7_3:-81432546 Msa1129470:CDS
CATGCAATTGGCGATGCAAC+AGG 0.403226 7_3:-81431379 Msa1129470:CDS
AACCTTCCATTCAACCAGTA+TGG 0.403496 7_3:-81431306 Msa1129470:CDS
TCAATAATTTGTTTCGTGCC+TGG 0.413381 7_3:+81432471 None:intergenic
TGGGGTGAGGCGGTGTATGG+TGG 0.423405 7_3:-81430713 Msa1129470:CDS
TTTCCACTGCATAACCTAAA+GGG 0.424654 7_3:+81430888 None:intergenic
GAAGAGTTAGATAAGATGTT+TGG 0.426938 7_3:-81430563 Msa1129470:CDS
AAGTGTGGTGGTTTCATTGT+GGG 0.430933 7_3:-81431415 Msa1129470:CDS
GTTTATTACTATCCACTTGC+GGG 0.432351 7_3:-81432648 Msa1129470:CDS
TCTTCCTTGTTGATATTTGA+CGG 0.432691 7_3:+81431211 None:intergenic
TCATCCTATTCTGTTCATAC+AGG 0.434182 7_3:-81432448 Msa1129470:intron
TATTTGACGGAAGTATTTGT+TGG 0.434903 7_3:+81431224 None:intergenic
GTTCTTGGAAGCAAGGGAAT+GGG 0.437641 7_3:+81432508 None:intergenic
CCGGCTGCTGTCACCACCGC+AGG 0.437909 7_3:-81430926 Msa1129470:CDS
GAAGAATTAGGGAGGGAGCT+AGG 0.442327 7_3:-81432626 Msa1129470:CDS
CTGCATTGACGAAGGTGAAA+TGG 0.446524 7_3:+81431112 None:intergenic
GTGTAAAGAAGAAAGATTGA+TGG 0.448040 7_3:+81431167 None:intergenic
GCGGAGGGTCTCTTGCCATT+AGG 0.455363 7_3:+81431272 None:intergenic
AAACTAGGACCAATCGTTGT+AGG 0.458464 7_3:+81430527 Msa1129460:intron
GCATCGTTAATGCACGTTCA+AGG 0.459702 7_3:-81431003 Msa1129470:CDS
ATTTCCACTGCATAACCTAA+AGG 0.460925 7_3:+81430887 None:intergenic
TTCGTACAACTGAACTATCT+TGG 0.473397 7_3:+81432986 None:intergenic
GGGAGCTAGGGACAAGTTGA+TGG 0.473590 7_3:-81432613 Msa1129470:CDS
AAAGCTGGTGGCACCAACTC+TGG 0.474806 7_3:+81432825 None:intergenic
AGTTCTTGGAAGCAAGGGAA+TGG 0.482681 7_3:+81432507 None:intergenic
ATCCCACATAAGAATGCAAA+AGG 0.484239 7_3:-81430644 Msa1129470:CDS
AAGAATTAGGGAGGGAGCTA+GGG 0.488281 7_3:-81432625 Msa1129470:CDS
GAACTCATATACGATGTTCC+AGG 0.488751 7_3:-81432489 Msa1129470:CDS
AGGATCTCTCTGCGCCATAC+TGG 0.495159 7_3:+81431292 None:intergenic
GTAAACTGGAACCATGCAAT+TGG 0.495199 7_3:-81431391 Msa1129470:CDS
GGTGGGGCTGGACCTTTACC+TGG 0.499401 7_3:-81430680 Msa1129470:CDS
TCCGCAAAGCTTCCCTGCGG+TGG 0.499603 7_3:+81430913 None:intergenic
TCTGCGCCATACTGGTTGAA+TGG 0.499989 7_3:+81431300 None:intergenic
AGTTTAACTTCGCGAGGAGT+GGG 0.506066 7_3:+81432801 None:intergenic
TCCCTAATTCTTCCCGCAAG+TGG 0.509710 7_3:+81432636 None:intergenic
GGAGTGGTAAAAGGTGGGGC+TGG 0.515635 7_3:-81430692 Msa1129470:CDS
ACCACCGCAGGGAAGCTTTG+CGG 0.519285 7_3:-81430914 Msa1129470:CDS
CTATCGTTACGAACCATCAA+TGG 0.520395 7_3:-81432721 Msa1129470:CDS
AATAGGTAGTCAATAAAAGT+TGG 0.521730 7_3:-81430382 Msa1129470:three_prime_UTR
ATGGTGGAGTGGTAAAAGGT+GGG 0.522041 7_3:-81430697 Msa1129470:CDS
CAAAATCAACCTACAACGAT+TGG 0.525230 7_3:-81430536 Msa1129470:CDS
TCGCGAGGAGTGGGTAAAGC+TGG 0.526362 7_3:+81432810 None:intergenic
TAGTTTAACTTCGCGAGGAG+TGG 0.531895 7_3:+81432800 None:intergenic
GAAACAATTCATGAATGTAT+GGG 0.532109 7_3:-81431353 Msa1129470:CDS
TGAACCTGTATGAACAGAAT+AGG 0.541680 7_3:+81432444 None:intergenic
AAGAATGCAAAAGGAGGAGA+AGG 0.542764 7_3:-81430635 Msa1129470:CDS
CGCCATACTGGTTGAATGGA+AGG 0.543769 7_3:+81431304 None:intergenic
TTCTTGGAAGCAAGGGAATG+GGG 0.544018 7_3:+81432509 None:intergenic
ATATACGTAGCTCCAGGTAA+AGG 0.544205 7_3:+81430668 Msa1129460:CDS
TGTTTATTACTATCCACTTG+CGG 0.545893 7_3:-81432649 Msa1129470:CDS
GGTAGAGAAAGACCCTGTTA+AGG 0.553972 7_3:-81432700 Msa1129470:CDS
ATGGTGGATTGTACTGGTGA+AGG 0.555043 7_3:-81432594 Msa1129470:CDS
TATATGAGTTCTTGGAAGCA+AGG 0.556792 7_3:+81432501 None:intergenic
CTGCGGTGGTGACAGCAGCC+GGG 0.558615 7_3:+81430927 None:intergenic
GCGGAGGTGCCAACCAGAGT+TGG 0.564737 7_3:-81432838 Msa1129470:CDS
TGAGGCGGTGTATGGTGGAG+TGG 0.570853 7_3:-81430708 Msa1129470:CDS
CTGTTGCATCGCCAATTGCA+TGG 0.571678 7_3:+81431380 None:intergenic
CTGGTGGCACCAACTCTGGT+TGG 0.572358 7_3:+81432829 None:intergenic
GATAATAGTTTAACTTCGCG+AGG 0.573152 7_3:+81432795 None:intergenic
TATGGTGGAGTGGTAAAAGG+TGG 0.581935 7_3:-81430698 Msa1129470:CDS
TAACCTCTGAAGTTATGAAG+AGG 0.583920 7_3:-81430592 Msa1129470:CDS
AAGGTAGAGATAACAAAACT+AGG 0.584883 7_3:+81430512 Msa1129460:intron
GGTTGCAAGTAATGCGCGGA+GGG 0.591291 7_3:+81431257 None:intergenic
GGGATTATATACGTAGCTCC+AGG 0.593500 7_3:+81430662 Msa1129460:CDS
ATGGCGCAGAGAGATCCTAA+TGG 0.598701 7_3:-81431287 Msa1129470:CDS
AAACCTCTTCATAACTTCAG+AGG 0.602162 7_3:+81430589 Msa1129460:CDS
TCTGACATAGATGATCAAGA+AGG 0.602444 7_3:-81432774 Msa1129470:CDS
ATATGAGTTCTTGGAAGCAA+GGG 0.602607 7_3:+81432502 None:intergenic
AAGTTGATGGTGGATTGTAC+TGG 0.603417 7_3:-81432600 Msa1129470:CDS
CAAGTGTGGTGGTTTCATTG+TGG 0.611937 7_3:-81431416 Msa1129470:CDS
TTACCATAATATCCATCAAG+TGG 0.613197 7_3:+81430962 None:intergenic
TCTTGGAAGCAAGGGAATGG+GGG 0.616445 7_3:+81432510 None:intergenic
AATATCCATCAAGTGGCGAA+TGG 0.617318 7_3:+81430969 None:intergenic
CGAGGAGTGGGTAAAGCTGG+TGG 0.619470 7_3:+81432813 None:intergenic
AAACCCTTTAGGTTATGCAG+TGG 0.626639 7_3:-81430891 Msa1129470:CDS
AGCTAGGGACAAGTTGATGG+TGG 0.631233 7_3:-81432610 Msa1129470:CDS
CCACATAAGAATGCAAAAGG+AGG 0.632833 7_3:-81430641 Msa1129470:CDS
CGGCTGCTGTCACCACCGCA+GGG 0.632979 7_3:-81430925 Msa1129470:CDS
GTATTTGTTGGTATTCACGA+TGG 0.633823 7_3:+81431236 None:intergenic
TGGTGGAGTGGTAAAAGGTG+GGG 0.634490 7_3:-81430696 Msa1129470:CDS
CACATTTAAGAACCTTAACA+GGG 0.639455 7_3:+81432688 None:intergenic
CGAATTGCAGCTATGTGAGA+AGG 0.642140 7_3:+81431145 None:intergenic
CAGATCACACGTCTCAAGTG+TGG 0.657117 7_3:-81431430 Msa1129470:CDS
CAAATGTACTGCATTGACGA+AGG 0.667868 7_3:+81431104 None:intergenic
ATCACACGTCTCAAGTGTGG+TGG 0.671401 7_3:-81431427 Msa1129470:CDS
TGTTAATGTTCACAGCGCGG+AGG 0.678502 7_3:-81432854 Msa1129470:CDS
ACTTGCGGGAAGAATTAGGG+AGG 0.685706 7_3:-81432634 Msa1129470:CDS
CTTGCGGGAAGAATTAGGGA+GGG 0.687102 7_3:-81432633 Msa1129470:CDS
CGATGGTTGCAAGTAATGCG+CGG 0.689910 7_3:+81431253 None:intergenic
ACTTCCGTCAAATATCAACA+AGG 0.705210 7_3:-81431215 Msa1129470:CDS
TGGTTGCAAGTAATGCGCGG+AGG 0.705557 7_3:+81431256 None:intergenic
GTATGGGCAGAAATGGCTCG+AGG 0.708290 7_3:-81431337 Msa1129470:CDS
GTTTCCGCAAAGCTTCCCTG+CGG 0.715488 7_3:+81430910 None:intergenic
CATTGTTAATGTTCACAGCG+CGG 0.734245 7_3:-81432857 Msa1129470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAATTTAAAAGCA+AGG + chr7_3:81430982-81431001 None:intergenic 10.0%
!! AAAAAAGAAAAAAAAAACAT+AGG + chr7_3:81431068-81431087 None:intergenic 10.0%
!! GAAATTAGAATAATAATTAA+AGG - chr7_3:81431418-81431437 Msa1129470:CDS 10.0%
!! AAATGATTTAATCTATTATA+TGG - chr7_3:81431618-81431637 Msa1129470:intron 10.0%
!!! AATTTATTTAACTTATCTAA+TGG + chr7_3:81432826-81432845 None:intergenic 10.0%
!! TAACGATAGATAAATATAAT+AGG + chr7_3:81430565-81430584 Msa1129460:intron 15.0%
!!! TTTTGACAGAAAATTAATTA+TGG - chr7_3:81431137-81431156 Msa1129470:CDS 15.0%
!! TTTGACAGAAAATTAATTAT+GGG - chr7_3:81431138-81431157 Msa1129470:CDS 15.0%
!!! TAATTTTCTTTAATCATTGA+CGG + chr7_3:81431186-81431205 None:intergenic 15.0%
!!! TAAATCTATGAAATTAGTTT+AGG + chr7_3:81431284-81431303 None:intergenic 15.0%
!!! AACAAATATTTCTTTTGTTT+TGG + chr7_3:81431385-81431404 None:intergenic 15.0%
!! ATATGTATATGAAAACATAA+AGG + chr7_3:81431461-81431480 None:intergenic 15.0%
!! GATAAGTTAAATAAATTTGT+TGG - chr7_3:81432829-81432848 Msa1129470:CDS 15.0%
!! AACTTATTACCATAATAAAT+TGG + chr7_3:81432883-81432902 None:intergenic 15.0%
!! TGATTGCGTTAATTTATAAA+TGG + chr7_3:81430352-81430371 Msa1129460:intron 20.0%
!! ACAAAAATAGAAGAGTTAAT+AGG + chr7_3:81430405-81430424 Msa1129460:intron 20.0%
!! AAGAAAAAAAAAACATAGGT+TGG + chr7_3:81431064-81431083 None:intergenic 20.0%
!!! TTTTTCCAAAAAATAGTAGT+TGG - chr7_3:81431083-81431102 Msa1129470:CDS 20.0%
!!! ATCATTGATTTGAAATTCAA+AGG - chr7_3:81431510-81431529 Msa1129470:intron 20.0%
!!! TAAATAAATTTGTTGGCTTA+TGG - chr7_3:81432836-81432855 Msa1129470:CDS 20.0%
!!! ATTGTTATTGCCTACAATTT+TGG - chr7_3:81431022-81431041 Msa1129470:CDS 25.0%
! AAATTAATTATGGGTAGAGA+CGG - chr7_3:81431147-81431166 Msa1129470:CDS 25.0%
!!! CACATACAGTTAGTTATTTT+AGG - chr7_3:81431239-81431258 Msa1129470:CDS 25.0%
! TATTGTTTGGTATGAGATTA+AGG + chr7_3:81431654-81431673 None:intergenic 25.0%
! TTCTATGAACATAGAAAGAA+AGG + chr7_3:81431683-81431702 None:intergenic 25.0%
! ATCAAAAAAGAAAGTTCATG+TGG + chr7_3:81431740-81431759 None:intergenic 25.0%
! TGAAACAATTCATGAATGTA+TGG - chr7_3:81431943-81431962 Msa1129470:intron 25.0%
! GAAACAATTCATGAATGTAT+GGG - chr7_3:81431944-81431963 Msa1129470:intron 25.0%
!! AAGTACTCAGAAGTAAATTT+TGG - chr7_3:81432560-81432579 Msa1129470:CDS 25.0%
! AATGAGAGACCAATTTATTA+TGG - chr7_3:81432871-81432890 Msa1129470:exon 25.0%
! AAGTTAAAACTTTCCACAAT+AGG - chr7_3:81432898-81432917 Msa1129470:five_prime_UTR 25.0%
! AATAGGTAGTCAATAAAAGT+TGG - chr7_3:81432915-81432934 Msa1129470:five_prime_UTR 25.0%
CACATTTAAGAACCTTAACA+GGG + chr7_3:81430612-81430631 Msa1129460:CDS 30.0%
TGTTTATTACTATCCACTTG+CGG - chr7_3:81430648-81430667 Msa1129470:CDS 30.0%
GATGTAACACTTGATGAATT+TGG - chr7_3:81430751-81430770 Msa1129470:CDS 30.0%
CACAACTTTATGGACAAAAA+TGG + chr7_3:81430940-81430959 None:intergenic 30.0%
TCCAAAAAATAGTAGTTGGA+AGG - chr7_3:81431087-81431106 Msa1129470:CDS 30.0%
AGAAAGGCAAGTATATTGTT+TGG + chr7_3:81431667-81431686 None:intergenic 30.0%
TAACATGTAGAAAGTTCATG+TGG + chr7_3:81431769-81431788 None:intergenic 30.0%
ATCACATATACCAAACTGAT+TGG - chr7_3:81431793-81431812 Msa1129470:intron 30.0%
!! TATTTGACGGAAGTATTTGT+TGG + chr7_3:81432076-81432095 None:intergenic 30.0%
TCTTCCTTGTTGATATTTGA+CGG + chr7_3:81432089-81432108 None:intergenic 30.0%
GTGTAAAGAAGAAAGATTGA+TGG + chr7_3:81432133-81432152 None:intergenic 30.0%
! ATCTTATCACTGCATGTTTT+TGG - chr7_3:81432216-81432235 Msa1129470:intron 30.0%
ATCATTTGTACTTCTTCATC+TGG + chr7_3:81432272-81432291 None:intergenic 30.0%
TTACCATAATATCCATCAAG+TGG + chr7_3:81432338-81432357 None:intergenic 30.0%
AGAAGAATACATGCATTCTT+TGG - chr7_3:81432460-81432479 Msa1129470:CDS 30.0%
! ACTCAGAAGTAAATTTTGGA+TGG - chr7_3:81432564-81432583 Msa1129470:CDS 30.0%
! CTCAGAAGTAAATTTTGGAT+GGG - chr7_3:81432565-81432584 Msa1129470:CDS 30.0%
! TCAGAAGTAAATTTTGGATG+GGG - chr7_3:81432566-81432585 Msa1129470:CDS 30.0%
GAAGAGTTAGATAAGATGTT+TGG - chr7_3:81432734-81432753 Msa1129470:CDS 30.0%
AAGGTAGAGATAACAAAACT+AGG + chr7_3:81432788-81432807 None:intergenic 30.0%
ATGGAACATCACAAACTATA+AGG + chr7_3:81432807-81432826 None:intergenic 30.0%
!! CTTTTATTGACTACCTATTG+TGG + chr7_3:81432914-81432933 None:intergenic 30.0%
! GATAATAGTTTAACTTCGCG+AGG + chr7_3:81430505-81430524 Msa1129460:intron 35.0%
TCTGACATAGATGATCAAGA+AGG - chr7_3:81430523-81430542 Msa1129470:CDS 35.0%
GCACATTTAAGAACCTTAAC+AGG + chr7_3:81430613-81430632 Msa1129460:CDS 35.0%
GTTTATTACTATCCACTTGC+GGG - chr7_3:81430649-81430668 Msa1129470:CDS 35.0%
ATATGAGTTCTTGGAAGCAA+GGG + chr7_3:81430798-81430817 Msa1129460:CDS 35.0%
TATATGAGTTCTTGGAAGCA+AGG + chr7_3:81430799-81430818 Msa1129460:CDS 35.0%
GAACATCGTATATGAGTTCT+TGG + chr7_3:81430807-81430826 Msa1129460:CDS 35.0%
!! TCAATAATTTGTTTCGTGCC+TGG + chr7_3:81430829-81430848 Msa1129460:CDS 35.0%
TCATCCTATTCTGTTCATAC+AGG - chr7_3:81430849-81430868 Msa1129470:CDS 35.0%
TGAACCTGTATGAACAGAAT+AGG + chr7_3:81430856-81430875 Msa1129460:CDS 35.0%
! TCTCATCCTTAATGTTTTGC+TGG - chr7_3:81430889-81430908 Msa1129470:CDS 35.0%
! ATTAAGTCAAAAGTGTGGCT+AGG + chr7_3:81430915-81430934 None:intergenic 35.0%
TGGTGATTAAGTCAAAAGTG+TGG + chr7_3:81430920-81430939 None:intergenic 35.0%
TTGTCTGAGTCACAACTTTA+TGG + chr7_3:81430950-81430969 None:intergenic 35.0%
AACCTAGTCTCCAAAATTGT+AGG + chr7_3:81431035-81431054 None:intergenic 35.0%
!!! GCCTTCCAACTACTATTTTT+TGG + chr7_3:81431091-81431110 None:intergenic 35.0%
! AATTTTGCCTCTCAACTAAC+AGG - chr7_3:81431320-81431339 Msa1129470:CDS 35.0%
ACTCAAATGAGTCTCACTAA+AGG + chr7_3:81431538-81431557 None:intergenic 35.0%
TATACCAAACTGATTGGATC+AGG - chr7_3:81431799-81431818 Msa1129470:intron 35.0%
! GTATTTGTTGGTATTCACGA+TGG + chr7_3:81432064-81432083 None:intergenic 35.0%
ACTTCCGTCAAATATCAACA+AGG - chr7_3:81432082-81432101 Msa1129470:intron 35.0%
!! GAAGAAAGATTGATGGACTA+TGG + chr7_3:81432126-81432145 None:intergenic 35.0%
TTAATGCACGTTCAAGGTTT+AGG - chr7_3:81432300-81432319 Msa1129470:intron 35.0%
TAATGCACGTTCAAGGTTTA+GGG - chr7_3:81432301-81432320 Msa1129470:intron 35.0%
TTTCCACTGCATAACCTAAA+GGG + chr7_3:81432412-81432431 None:intergenic 35.0%
ATTTCCACTGCATAACCTAA+AGG + chr7_3:81432413-81432432 None:intergenic 35.0%
GGCAGATCTTATGGTTATTA+AGG - chr7_3:81432481-81432500 Msa1129470:CDS 35.0%
ATCCCACATAAGAATGCAAA+AGG - chr7_3:81432653-81432672 Msa1129470:CDS 35.0%
! CTCCTTTTGCATTCTTATGT+GGG + chr7_3:81432658-81432677 None:intergenic 35.0%
!! TAACCTCTGAAGTTATGAAG+AGG - chr7_3:81432705-81432724 Msa1129470:CDS 35.0%
AAACCTCTTCATAACTTCAG+AGG + chr7_3:81432711-81432730 None:intergenic 35.0%
!!! CAATCGTTGTAGGTTGATTT+TGG + chr7_3:81432763-81432782 None:intergenic 35.0%
CAAAATCAACCTACAACGAT+TGG - chr7_3:81432761-81432780 Msa1129470:CDS 35.0%
CATTGTTAATGTTCACAGCG+CGG - chr7_3:81430440-81430459 Msa1129470:three_prime_UTR 40.0%
CTATCGTTACGAACCATCAA+TGG - chr7_3:81430576-81430595 Msa1129470:CDS 40.0%
!! AAGTTGATGGTGGATTGTAC+TGG - chr7_3:81430697-81430716 Msa1129470:CDS 40.0%
GAACTCATATACGATGTTCC+AGG - chr7_3:81430808-81430827 Msa1129470:CDS 40.0%
!! TGCCTACAATTTTGGAGACT+AGG - chr7_3:81431030-81431049 Msa1129470:CDS 40.0%
!! TCTGTCAAAATCGATTCGAG+TGG + chr7_3:81431127-81431146 None:intergenic 40.0%
TAACAGGCAAGAAGACAAGT+TGG - chr7_3:81431336-81431355 Msa1129470:CDS 40.0%
ATGTCCTGATCCAATCAGTT+TGG + chr7_3:81431806-81431825 None:intergenic 40.0%
AAGTGTGGTGGTTTCATTGT+GGG - chr7_3:81431882-81431901 Msa1129470:intron 40.0%
GTAAACTGGAACCATGCAAT+TGG - chr7_3:81431906-81431925 Msa1129470:intron 40.0%
CATGAATGTATGGGCAGAAA+TGG - chr7_3:81431953-81431972 Msa1129470:intron 40.0%
AACCTTCCATTCAACCAGTA+TGG - chr7_3:81431991-81432010 Msa1129470:intron 40.0%
! CAAATGTACTGCATTGACGA+AGG + chr7_3:81432196-81432215 None:intergenic 40.0%
AATATCCATCAAGTGGCGAA+TGG + chr7_3:81432331-81432350 None:intergenic 40.0%
! TCGCCACTTGATGGATATTA+TGG - chr7_3:81432332-81432351 Msa1129470:intron 40.0%
! TGGTAACTGTTTTGCTTTCC+CGG - chr7_3:81432352-81432371 Msa1129470:intron 40.0%
! AAACCCTTTAGGTTATGCAG+TGG - chr7_3:81432406-81432425 Msa1129470:intron 40.0%
GCATTCTTTGGCAGATCTTA+TGG - chr7_3:81432472-81432491 Msa1129470:CDS 40.0%
! AGTAAATTTTGGATGGGGTG+AGG - chr7_3:81432571-81432590 Msa1129470:CDS 40.0%
ATATACGTAGCTCCAGGTAA+AGG + chr7_3:81432632-81432651 None:intergenic 40.0%
! CCTCCTTTTGCATTCTTATG+TGG + chr7_3:81432659-81432678 None:intergenic 40.0%
CCACATAAGAATGCAAAAGG+AGG - chr7_3:81432656-81432675 Msa1129470:CDS 40.0%
AAGAATGCAAAAGGAGGAGA+AGG - chr7_3:81432662-81432681 Msa1129470:CDS 40.0%
AAACTAGGACCAATCGTTGT+AGG + chr7_3:81432773-81432792 None:intergenic 40.0%
! AGTTTAACTTCGCGAGGAGT+GGG + chr7_3:81430499-81430518 Msa1129460:intron 45.0%
! TAGTTTAACTTCGCGAGGAG+TGG + chr7_3:81430500-81430519 Msa1129460:intron 45.0%
GGGTCTTTCTCTACCATTGA+TGG + chr7_3:81430592-81430611 Msa1129460:CDS 45.0%
GGTAGAGAAAGACCCTGTTA+AGG - chr7_3:81430597-81430616 Msa1129470:CDS 45.0%
ATCCACTTGCGGGAAGAATT+AGG - chr7_3:81430659-81430678 Msa1129470:CDS 45.0%
TCCACTTGCGGGAAGAATTA+GGG - chr7_3:81430660-81430679 Msa1129470:CDS 45.0%
AAGAATTAGGGAGGGAGCTA+GGG - chr7_3:81430672-81430691 Msa1129470:CDS 45.0%
!! ATGGTGGATTGTACTGGTGA+AGG - chr7_3:81430703-81430722 Msa1129470:CDS 45.0%
TTCTTGGAAGCAAGGGAATG+GGG + chr7_3:81430791-81430810 Msa1129460:CDS 45.0%
GTTCTTGGAAGCAAGGGAAT+GGG + chr7_3:81430792-81430811 Msa1129460:CDS 45.0%
AGTTCTTGGAAGCAAGGGAA+TGG + chr7_3:81430793-81430812 Msa1129460:CDS 45.0%
GCTAGGCCAGCAAAACATTA+AGG + chr7_3:81430898-81430917 None:intergenic 45.0%
CTTCTTGCCTGTTAGTTGAG+AGG + chr7_3:81431330-81431349 None:intergenic 45.0%
CTGATTGGATCAGGACATGA+TGG - chr7_3:81431808-81431827 Msa1129470:intron 45.0%
CAAGTGTGGTGGTTTCATTG+TGG - chr7_3:81431881-81431900 Msa1129470:intron 45.0%
GTTTCATTGTGGGCGTAAAC+TGG - chr7_3:81431892-81431911 Msa1129470:intron 45.0%
CGAATTGCAGCTATGTGAGA+AGG + chr7_3:81432155-81432174 None:intergenic 45.0%
! CTGCATTGACGAAGGTGAAA+TGG + chr7_3:81432188-81432207 None:intergenic 45.0%
GCATCGTTAATGCACGTTCA+AGG - chr7_3:81432294-81432313 Msa1129470:intron 45.0%
AAGCTTTGCGGAAACCCTTT+AGG - chr7_3:81432395-81432414 Msa1129470:intron 45.0%
! AAATTTTGGATGGGGTGAGG+CGG - chr7_3:81432574-81432593 Msa1129470:CDS 45.0%
! GTGTATGGTGGAGTGGTAAA+AGG - chr7_3:81432596-81432615 Msa1129470:CDS 45.0%
! TATGGTGGAGTGGTAAAAGG+TGG - chr7_3:81432599-81432618 Msa1129470:CDS 45.0%
! ATGGTGGAGTGGTAAAAGGT+GGG - chr7_3:81432600-81432619 Msa1129470:CDS 45.0%
GGGATTATATACGTAGCTCC+AGG + chr7_3:81432638-81432657 None:intergenic 45.0%
TGTTAATGTTCACAGCGCGG+AGG - chr7_3:81430443-81430462 Msa1129470:three_prime_UTR 50.0%
TCCCTAATTCTTCCCGCAAG+TGG + chr7_3:81430664-81430683 Msa1129460:CDS 50.0%
ACTTGCGGGAAGAATTAGGG+AGG - chr7_3:81430663-81430682 Msa1129470:CDS 50.0%
CTTGCGGGAAGAATTAGGGA+GGG - chr7_3:81430664-81430683 Msa1129470:CDS 50.0%
GAAGAATTAGGGAGGGAGCT+AGG - chr7_3:81430671-81430690 Msa1129470:CDS 50.0%
!! AGCTAGGGACAAGTTGATGG+TGG - chr7_3:81430687-81430706 Msa1129470:CDS 50.0%
TCTTGGAAGCAAGGGAATGG+GGG + chr7_3:81430790-81430809 Msa1129460:CDS 50.0%
CAGATCACACGTCTCAAGTG+TGG - chr7_3:81431867-81431886 Msa1129470:intron 50.0%
ATCACACGTCTCAAGTGTGG+TGG - chr7_3:81431870-81431889 Msa1129470:intron 50.0%
CTGTTGCATCGCCAATTGCA+TGG + chr7_3:81431920-81431939 None:intergenic 50.0%
CATGCAATTGGCGATGCAAC+AGG - chr7_3:81431918-81431937 Msa1129470:intron 50.0%
! CGCCATACTGGTTGAATGGA+AGG + chr7_3:81431996-81432015 None:intergenic 50.0%
! TCTGCGCCATACTGGTTGAA+TGG + chr7_3:81432000-81432019 None:intergenic 50.0%
ATGGCGCAGAGAGATCCTAA+TGG - chr7_3:81432010-81432029 Msa1129470:intron 50.0%
CGATGGTTGCAAGTAATGCG+CGG + chr7_3:81432047-81432066 None:intergenic 50.0%
GCTAACCATTCGCCACTTGA+TGG - chr7_3:81432323-81432342 Msa1129470:intron 50.0%
TGGTGGAGTGGTAAAAGGTG+GGG - chr7_3:81432601-81432620 Msa1129470:CDS 50.0%
AAAGCTGGTGGCACCAACTC+TGG + chr7_3:81430475-81430494 Msa1129460:intron 55.0%
! GGGAGCTAGGGACAAGTTGA+TGG - chr7_3:81430684-81430703 Msa1129470:CDS 55.0%
AAGCAAGGGAATGGGGGATG+AGG + chr7_3:81430784-81430803 Msa1129460:CDS 55.0%
GTATGGGCAGAAATGGCTCG+AGG - chr7_3:81431960-81431979 Msa1129470:intron 55.0%
AGGATCTCTCTGCGCCATAC+TGG + chr7_3:81432008-81432027 None:intergenic 55.0%
GGTTGCAAGTAATGCGCGGA+GGG + chr7_3:81432043-81432062 None:intergenic 55.0%
TGGTTGCAAGTAATGCGCGG+AGG + chr7_3:81432044-81432063 None:intergenic 55.0%
GTTTCCGCAAAGCTTCCCTG+CGG + chr7_3:81432390-81432409 None:intergenic 55.0%
CTGGTGGCACCAACTCTGGT+TGG + chr7_3:81430471-81430490 Msa1129460:intron 60.0%
CGAGGAGTGGGTAAAGCTGG+TGG + chr7_3:81430487-81430506 Msa1129460:intron 60.0%
TCGCGAGGAGTGGGTAAAGC+TGG + chr7_3:81430490-81430509 Msa1129460:intron 60.0%
GCGGAGGGTCTCTTGCCATT+AGG + chr7_3:81432028-81432047 None:intergenic 60.0%
ACCACCGCAGGGAAGCTTTG+CGG - chr7_3:81432383-81432402 Msa1129470:intron 60.0%
! TGAGGCGGTGTATGGTGGAG+TGG - chr7_3:81432589-81432608 Msa1129470:CDS 60.0%
GGAGTGGTAAAAGGTGGGGC+TGG - chr7_3:81432605-81432624 Msa1129470:CDS 60.0%
!! GCGGAGGTGCCAACCAGAGT+TGG - chr7_3:81430459-81430478 Msa1129470:three_prime_UTR 65.0%
TCCGCAAAGCTTCCCTGCGG+TGG + chr7_3:81432387-81432406 None:intergenic 65.0%
GGATGGGGTGAGGCGGTGTA+TGG - chr7_3:81432581-81432600 Msa1129470:CDS 65.0%
TGGGGTGAGGCGGTGTATGG+TGG - chr7_3:81432584-81432603 Msa1129470:CDS 65.0%
GGTGGGGCTGGACCTTTACC+TGG - chr7_3:81432617-81432636 Msa1129470:CDS 65.0%
CTGCGGTGGTGACAGCAGCC+GGG + chr7_3:81432373-81432392 None:intergenic 70.0%
CCTGCGGTGGTGACAGCAGC+CGG + chr7_3:81432374-81432393 None:intergenic 70.0%
CGGCTGCTGTCACCACCGCA+GGG - chr7_3:81432372-81432391 Msa1129470:intron 70.0%
CCGGCTGCTGTCACCACCGC+AGG - chr7_3:81432371-81432390 Msa1129470:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81430314 81433005 81430314 ID=Msa1129470;Name=Msa1129470
chr7_3 mRNA 81430314 81433005 81430314 ID=Msa1129470-mRNA-1;Parent=Msa1129470;Name=Msa1129470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=116|1|1|1|1|1|2|194|460
chr7_3 exon 81430314 81431449 81430314 ID=Msa1129470-mRNA-1:exon:23680;Parent=Msa1129470-mRNA-1
chr7_3 exon 81432449 81433005 81432449 ID=Msa1129470-mRNA-1:exon:23679;Parent=Msa1129470-mRNA-1
chr7_3 five_prime_UTR 81432890 81433005 81432890 ID=Msa1129470-mRNA-1:five_prime_utr;Parent=Msa1129470-mRNA-1
chr7_3 CDS 81432449 81432889 81432449 ID=Msa1129470-mRNA-1:cds;Parent=Msa1129470-mRNA-1
chr7_3 CDS 81430508 81431449 81430508 ID=Msa1129470-mRNA-1:cds;Parent=Msa1129470-mRNA-1
chr7_3 three_prime_UTR 81430314 81430507 81430314 ID=Msa1129470-mRNA-1:three_prime_utr;Parent=Msa1129470-mRNA-1
Gene Sequence

>Msa1129470

ATGACTTCGTCATTGTTAATGTTCACAGCGCGGAGGTGCCAACCAGAGTTGGTGCCACCAGCTTTACCCACTCCTCGCGAAGTTAAACTATTATCTGACATAGATGATCAAGAAGGTTTGCGTTTCAATATGCCTATTATATTTATCTATCGTTACGAACCATCAATGGTAGAGAAAGACCCTGTTAAGGTTCTTAAATGTGCACTCTCAAAAACACTTGTTTATTACTATCCACTTGCGGGAAGAATTAGGGAGGGAGCTAGGGACAAGTTGATGGTGGATTGTACTGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATGAATTTGGTGATGTACCTCATCCCCCATTCCCTTGCTTCCAAGAACTCATATACGATGTTCCAGGCACGAAACAAATTATTGATCATCCTATTCTGTTCATACAGATCACACGTCTCAAGTGTGGTGGTTTCATTGTGGGCGTAAACTGGAACCATGCAATTGGCGATGCAACAGGTTTGAAACAATTCATGAATGTATGGGCAGAAATGGCTCGAGGTGCACATCAACCTTCCATTCAACCAGTATGGCGCAGAGAGATCCTAATGGCAAGAGACCCTCCGCGCATTACTTGCAACCATCGTGAATACCAACAAATACTTCCGTCAAATATCAACAAGGAAGAAGATAATGTTGCTACCATAGTCCATCAATCTTTCTTCTTTACACCTTCTCACATAGCTGCAATTCGTCACTTGATTCCATTTCACCTTCGTCAATGCAGTACATTTGATCTTATCACTGCATGTTTTTGGTGTTGTCGCACAAAAGCATTACAGCTAGAGCCAGATGAAGAAGTACAAATGATGTGCATCGTTAATGCACGTTCAAGGTTTAGGGCTAACCATTCGCCACTTGATGGATATTATGGTAACTGTTTTGCTTTCCCGGCTGCTGTCACCACCGCAGGGAAGCTTTGCGGAAACCCTTTAGGTTATGCAGTGGAAATGATAAGAAAAGCAAAAGCTGAAGTTACAGAAGAATACATGCATTCTTTGGCAGATCTTATGGTTATTAAGGAACGATGTTTATTTACAACAATAAGAGCATGTGTTGTATCAGACTTGACTCGTGCTAAGTACTCAGAAGTAAATTTTGGATGGGGTGAGGCGGTGTATGGTGGAGTGGTAAAAGGTGGGGCTGGACCTTTACCTGGAGCTACGTATATAATCCCACATAAGAATGCAAAAGGAGGAGAAGGTTTGATATTATTAATTTTCTTAACCTCTGAAGTTATGAAGAGGTTTGCTGAAGAGTTAGATAAGATGTTTGGTAACCAAAATCAACCTACAACGATTGGTCCTAGTTTTGTTATCTCTACCTTATAG
Protein sequence

>Msa1129470

MTSSLLMFTARRCQPELVPPALPTPREVKLLSDIDDQEGLRFNMPIIFIYRYEPSMVEKDPVKVLKCALSKTLVYYYPLAGRIREGARDKLMVDCTGEGVMFIEAEADVTLDEFGDVPHPPFPCFQELIYDVPGTKQIIDHPILFIQITRLKCGGFIVGVNWNHAIGDATGLKQFMNVWAEMARGAHQPSIQPVWRREILMARDPPRITCNHREYQQILPSNINKEEDNVATIVHQSFFFTPSHIAAIRHLIPFHLRQCSTFDLITACFWCCRTKALQLEPDEEVQMMCIVNARSRFRANHSPLDGYYGNCFAFPAAVTTAGKLCGNPLGYAVEMIRKAKAEVTEEYMHSLADLMVIKERCLFTTIRACVVSDLTRAKYSEVNFGWGEAVYGGVVKGGAGPLPGATYIIPHKNAKGGEGLILLIFLTSEVMKRFAEELDKMFGNQNQPTTIGPSFVISTL*