AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046560 MtrunA17_Chr7g0267991 93.015 859 59 1 1 858 1 859 0.0 1654
Msa0046560 MtrunA17_Chr8g0380141 88.022 718 78 2 1 718 1 710 0.0 1326
Msa0046560 MtrunA17_Chr1g0201161 83.358 679 101 2 1 675 1 671 0.0 1177
Msa0046560 MtrunA17_Chr1g0201161 86.243 189 26 0 670 858 735 923 5.29e-103 340
Msa0046560 MtrunA17_Chr7g0270181 91.576 368 24 1 488 855 1 361 0.0 698
Msa0046560 MtrunA17_Chr3g0117141 42.209 860 394 13 1 844 1 773 0.0 671
Msa0046560 MtrunA17_Chr6g0449521 52.017 471 216 6 382 844 306 774 8.40e-166 501
Msa0046560 MtrunA17_Chr6g0449521 40.299 335 155 6 1 307 1 318 1.08e-65 234
Msa0046560 MtrunA17_Chr4g0058701 51.168 471 219 7 383 844 297 765 4.73e-163 494
Msa0046560 MtrunA17_Chr4g0058701 43.711 318 158 7 1 307 1 308 4.66e-69 244
Msa0046560 MtrunA17_Chr5g0447201 39.498 438 246 7 388 819 296 720 4.57e-95 315
Msa0046560 MtrunA17_Chr5g0447201 33.603 247 140 3 71 299 42 282 1.42e-38 154
Msa0046560 MtrunA17_Chr4g0064311 37.292 480 282 7 367 838 345 813 6.23e-95 316
Msa0046560 MtrunA17_Chr4g0064311 34.589 292 152 6 20 302 106 367 2.54e-43 169
Msa0046560 MtrunA17_Chr7g0257731 36.978 503 276 8 363 839 107 594 7.16e-95 310
Msa0046560 MtrunA17_Chr7g0257731 40.602 133 75 1 178 310 1 129 2.01e-24 108
Msa0046560 MtrunA17_Chr3g0116641 38.149 443 253 7 406 840 306 735 3.40e-92 307
Msa0046560 MtrunA17_Chr3g0116641 32.192 292 150 4 27 298 16 279 9.37e-40 157
Msa0046560 MtrunA17_Chr1g0173521 39.101 445 252 7 406 843 350 782 3.51e-90 302
Msa0046560 MtrunA17_Chr1g0173521 36.910 233 139 2 71 299 99 327 3.42e-41 162
Msa0046560 MtrunA17_Chr8g0380131 89.744 117 12 0 742 858 1 117 1.13e-67 220
Msa0046560 MtrunA17_Chr5g0427081 33.566 143 92 2 621 763 12 151 5.40e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046560 AT4G01970.1 57.629 852 341 12 18 858 34 876 0.0 1013
Msa0046560 AT4G01970.2 57.629 852 341 12 18 858 81 923 0.0 1013
Msa0046560 AT5G40390.1 52.484 463 216 4 384 844 310 770 1.91e-172 518
Msa0046560 AT5G40390.1 43.098 297 145 4 18 302 22 306 3.76e-65 233
Msa0046560 AT3G57520.1 34.496 516 290 10 363 847 264 762 5.79e-93 310
Msa0046560 AT3G57520.1 36.667 240 135 3 71 299 42 275 1.19e-41 164
Msa0046560 AT5G20250.3 38.479 447 261 6 388 832 287 721 1.71e-92 308
Msa0046560 AT5G20250.3 34.576 295 155 4 20 299 9 280 4.03e-43 168
Msa0046560 AT5G20250.1 38.479 447 261 6 388 832 287 721 1.71e-92 308
Msa0046560 AT5G20250.1 34.576 295 155 4 20 299 9 280 4.03e-43 168
Msa0046560 AT5G20250.2 38.479 447 261 6 388 832 287 721 1.71e-92 308
Msa0046560 AT5G20250.2 34.576 295 155 4 20 299 9 280 4.03e-43 168
Msa0046560 AT5G20250.4 38.479 447 261 6 388 832 382 816 6.33e-92 309
Msa0046560 AT5G20250.4 34.576 295 155 4 20 299 104 375 9.15e-43 168
Msa0046560 AT1G55740.1 38.938 452 253 8 403 843 303 742 6.61e-90 301
Msa0046560 AT1G55740.1 32.857 280 157 5 29 299 18 275 4.08e-39 156
Msa0046560 AT3G57520.2 35.381 407 243 7 363 766 264 653 4.37e-78 266
Msa0046560 AT3G57520.2 36.667 240 135 3 71 299 42 275 4.77e-42 164
Msa0046560 AT3G57520.3 38.333 300 168 5 363 659 264 549 6.62e-61 217
Msa0046560 AT3G57520.3 36.667 240 135 3 71 299 42 275 1.34e-42 164

Find 204 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTTAATTTGGAATTT+TGG 0.099821 1_1:-78788608 Msa0046560:three_prime_UTR
CCCCTAAACTTGTGCTCTTT+TGG 0.125940 1_1:+78789183 None:intergenic
AAACAACTGTTCTCAAAATT+TGG 0.128848 1_1:-78789562 Msa0046560:CDS
AATTGAATTGGTTCAGATTT+TGG 0.163451 1_1:+78789015 None:intergenic
CCAAATTTAGTTGATAAATT+TGG 0.169026 1_1:-78791388 Msa0046560:CDS
AGAGGAAAATGTATGCATTT+TGG 0.172365 1_1:+78789626 None:intergenic
CCAAATTTATCAACTAAATT+TGG 0.182749 1_1:+78791388 None:intergenic
CATTTCTCTTAACTTTAATT+TGG 0.183688 1_1:-78788616 Msa0046560:three_prime_UTR
TCCATTTCCATTAAAATTCT+TGG 0.200527 1_1:+78790102 None:intergenic
TTTATCTGAGGGAAAGTTTA+AGG 0.203268 1_1:-78791971 Msa0046560:CDS
ATCATTCCTATAATTGAAAA+AGG 0.215479 1_1:-78791613 Msa0046560:CDS
ACTATTGGCTTGTAGCATTC+AGG 0.242224 1_1:+78789156 None:intergenic
TCTCACAAAGGTGGTTTCTT+TGG 0.256159 1_1:-78791826 Msa0046560:CDS
TATGAAAGTGGATTGTTATT+AGG 0.257420 1_1:-78791130 Msa0046560:CDS
CCATTCAATTGAAACTTCTT+TGG 0.259667 1_1:+78788793 None:intergenic
AAGAGGCTTATAGTGTTATA+AGG 0.261390 1_1:-78791453 Msa0046560:CDS
ACATTATCACTCAAATAAAT+TGG 0.261796 1_1:+78789704 None:intergenic
GGATTAAAAGGAGGTGAATT+AGG 0.268125 1_1:+78791106 None:intergenic
ACAGCATAGGATTTGATTTC+AGG 0.273633 1_1:+78791637 None:intergenic
TGAAAGTGGTGCAAAGATTA+AGG 0.276825 1_1:-78788857 Msa0046560:CDS
GGAATTGAACATGAGCATTT+GGG 0.290038 1_1:-78791055 Msa0046560:CDS
AACATCAAATTTGCACCAAT+TGG 0.297810 1_1:-78788931 Msa0046560:CDS
TTTATCTAAGAGTTCTGATT+TGG 0.304861 1_1:-78791011 Msa0046560:CDS
TGAAGTGGCGTTTGAGTGGC+TGG 0.307659 1_1:-78788767 Msa0046560:CDS
GGCTGCTGGTGTTTCTGATT+TGG 0.316228 1_1:-78788704 Msa0046560:CDS
ATGCTCATGTTCAATTCCTT+TGG 0.319521 1_1:+78791060 None:intergenic
GAAGAAAGAAGCATCTGATT+TGG 0.320028 1_1:-78789097 Msa0046560:CDS
CACTCTTATCTTGCTGAATC+TGG 0.323017 1_1:-78790614 Msa0046560:CDS
ATTGTTCCTATAATAGCTTA+TGG 0.323339 1_1:-78789820 Msa0046560:CDS
TCCCATCCATAAGCTATTAT+AGG 0.323482 1_1:+78789814 None:intergenic
AGGAATTGAACATGAGCATT+TGG 0.323538 1_1:-78791056 Msa0046560:CDS
CCAAAGAAGTTTCAATTGAA+TGG 0.327615 1_1:-78788793 Msa0046560:CDS
AAAGAAATTGATGATCTCTT+TGG 0.331904 1_1:-78790956 Msa0046560:CDS
TGGTGGAACAATTCTTGATT+TGG 0.333054 1_1:-78788887 Msa0046560:CDS
TTTGTTCCAGTCACAAAGTT+TGG 0.335025 1_1:-78788958 Msa0046560:CDS
GGTGCAAAGATTAAGGTTAA+AGG 0.343844 1_1:-78788850 Msa0046560:CDS
AAACTTTCACCTGGCCTTGA+TGG 0.345335 1_1:-78790728 Msa0046560:CDS
CCCAAAAGAGCACAAGTTTA+GGG 0.345555 1_1:-78789184 Msa0046560:CDS
ACCCAAAAGAGCACAAGTTT+AGG 0.346754 1_1:-78789185 Msa0046560:CDS
TGTGTGCAGGGGACGACTTT+TGG 0.348233 1_1:-78789904 Msa0046560:intron
GTATTAAGATGTGTGGTTCC+TGG 0.349633 1_1:+78790767 None:intergenic
TGATAGATTGATGAATTCAT+TGG 0.350934 1_1:-78791782 Msa0046560:CDS
AAGTTTGCAAGGGACAATTT+TGG 0.353779 1_1:+78790745 None:intergenic
AATTCATTGGGTAGTTTCAA+TGG 0.355636 1_1:-78791769 Msa0046560:CDS
TGTTGCAAGGAAAAGGAGTA+TGG 0.358061 1_1:-78790887 Msa0046560:CDS
ACTCAATGGGTTGGTAAATC+TGG 0.360875 1_1:-78791703 Msa0046560:CDS
TTGGATCACCATTAGGATCT+TGG 0.360993 1_1:+78789879 None:intergenic
TCTATCAGATGGGGTTTCAT+TGG 0.361535 1_1:+78791798 None:intergenic
AATTGACTCTCAATGTTCCT+TGG 0.365903 1_1:-78788735 Msa0046560:CDS
AAAATTGTTGAAGGTTCAAT+TGG 0.374085 1_1:-78790680 Msa0046560:CDS
GCATGCATTATGTGGTGCTT+GGG 0.377719 1_1:-78790801 Msa0046560:CDS
GCTTGGGGTGGTGTGAGGCC+AGG 0.381667 1_1:-78790785 Msa0046560:CDS
GATGCAAAGAATCTTGTTCT+TGG 0.383283 1_1:-78791211 Msa0046560:CDS
GAATATGTGTGTGATAAATA+TGG 0.383570 1_1:-78790178 Msa0046560:CDS
CTTGCTGAATCTGGCGTCAC+AGG 0.389510 1_1:-78790605 Msa0046560:CDS
ATAAATTTGGTTGGTGTACT+TGG 0.391671 1_1:-78791375 Msa0046560:CDS
AAGAAAGAAGCATCTGATTT+GGG 0.399298 1_1:-78789096 Msa0046560:CDS
GAGGACTAAGTTCAAAGGTT+TGG 0.399831 1_1:-78790840 Msa0046560:CDS
CATGAAATTTAGCACAAATA+TGG 0.402279 1_1:+78789753 None:intergenic
GCTTTCAACTGTCAAGGGGC+AGG 0.405154 1_1:-78789213 Msa0046560:CDS
AGATCAACGGTTGTGGAATT+CGG 0.405372 1_1:+78792018 None:intergenic
GCCTCTTTCATCAAATCATA+AGG 0.410886 1_1:+78791469 None:intergenic
ATCTGGTTCTGATTTACAAA+TGG 0.419921 1_1:-78791686 Msa0046560:CDS
GGCATGCATTATGTGGTGCT+TGG 0.419974 1_1:-78790802 Msa0046560:CDS
TCCATTAAAATTCTTGGCAA+TGG 0.426719 1_1:+78790108 None:intergenic
TATTTAACTGTTAATCCTGT+TGG 0.427385 1_1:-78791343 Msa0046560:CDS
TCCTTATGATTTGATGAAAG+AGG 0.429052 1_1:-78791470 Msa0046560:CDS
TAACCCTTCATAGTAAGCTT+TGG 0.430154 1_1:+78790138 None:intergenic
GGTTGAATGATAAATTGAAT+TGG 0.432932 1_1:+78789003 None:intergenic
GACAGATGATTCGACCTGAT+TGG 0.433474 1_1:-78789793 Msa0046560:CDS
GACTGAAACATGTCCCAATC+AGG 0.434533 1_1:+78789779 None:intergenic
TGGATGGCAAAGCATTAGTT+TGG 0.435861 1_1:-78791254 Msa0046560:CDS
ACATGCACAGTACCAACTAT+TGG 0.438454 1_1:+78789141 None:intergenic
AGGCTTTCACAAGGGATTTG+AGG 0.440238 1_1:-78790859 Msa0046560:CDS
CTATTGGCTTGTAGCATTCA+GGG 0.449437 1_1:+78789157 None:intergenic
CCTTGGATTGATGAGGCTGC+TGG 0.450440 1_1:-78788718 Msa0046560:CDS
GCTCCCATTGGATCACCATT+AGG 0.450911 1_1:+78789872 None:intergenic
AGAGGCTTATAGTGTTATAA+GGG 0.452259 1_1:-78791452 Msa0046560:CDS
TTGCTGAATCTGGCGTCACA+GGG 0.453056 1_1:-78790604 Msa0046560:CDS
TTGAAAAGACAATCTCTAGT+AGG 0.453990 1_1:+78789602 None:intergenic
ATTTACAAATGGAAACTCAA+TGG 0.457763 1_1:-78791675 Msa0046560:CDS
AGGTTCGTTATCATTGATGA+TGG 0.458921 1_1:-78791274 Msa0046560:CDS
ACATCAAATTTGCACCAATT+GGG 0.460655 1_1:-78788930 Msa0046560:CDS
CTTTCAACTGTCAAGGGGCA+GGG 0.461758 1_1:-78789212 Msa0046560:CDS
ATCAGTCAATTGAAATAGAA+AGG 0.464390 1_1:+78788530 None:intergenic
GAAATTGATGATCTCTTTGG+TGG 0.465614 1_1:-78790953 Msa0046560:CDS
CTTGCCAAAGCTTACTATGA+AGG 0.466120 1_1:-78790142 Msa0046560:CDS
TTCCTATAATAGCTTATGGA+TGG 0.466764 1_1:-78789816 Msa0046560:CDS
AAGATTAAGGTTAAAGGTGG+TGG 0.466834 1_1:-78788844 Msa0046560:CDS
AAACAGTATGGAGGAGTGAT+TGG 0.468721 1_1:-78789237 Msa0046560:intron
AAACATGGTGGTCTACTCAA+TGG 0.471026 1_1:-78791717 Msa0046560:CDS
GCTGTGGTTAAAATTGTTGA+AGG 0.473872 1_1:-78790689 Msa0046560:CDS
TTTGATGAGATCAACGGTTG+TGG 0.474107 1_1:+78792011 None:intergenic
GGAAAAGGAGTATGGTTTGA+AGG 0.477848 1_1:-78790879 Msa0046560:CDS
ATTGAAATAGAAAGGCAATA+TGG 0.483856 1_1:+78788538 None:intergenic
GTCCCTTGCAAACTTTCACC+TGG 0.492351 1_1:-78790737 Msa0046560:CDS
ACAGATGATTCGACCTGATT+GGG 0.492428 1_1:-78789792 Msa0046560:CDS
GATAGATTGATGAATTCATT+GGG 0.493686 1_1:-78791781 Msa0046560:CDS
TGGAACAAAGCAAGTTTCCA+TGG 0.495682 1_1:-78790038 Msa0046560:CDS
TATGTGTGGCATGCATTATG+TGG 0.498900 1_1:-78790809 Msa0046560:CDS
ACTGGAAGGCTTCGTAGGCT+TGG 0.499891 1_1:-78791175 Msa0046560:CDS
TGGAAACTTGCTTTGTTCCA+AGG 0.501688 1_1:+78790041 None:intergenic
AAGCTTGTGTTGCAAGGAAA+AGG 0.501879 1_1:-78790894 Msa0046560:CDS
TTGCTTACCAACTCTTCCCA+TGG 0.504038 1_1:+78790021 None:intergenic
TCCATTGTTCCATCAAGGCC+AGG 0.507048 1_1:+78790719 None:intergenic
GAATTCATCAATCTATCAGA+TGG 0.508626 1_1:+78791787 None:intergenic
TCATTATTTGATTTATCTGA+GGG 0.509766 1_1:-78791982 Msa0046560:CDS
CAAGTTTCCATGGGAAGAGT+TGG 0.510287 1_1:-78790028 Msa0046560:intron
CAATGTTCCTTGGATTGATG+AGG 0.510869 1_1:-78788725 Msa0046560:CDS
TTGCCACCAAACTTTGTGAC+TGG 0.510959 1_1:+78788952 None:intergenic
GAACTGAAAGAAACATTCTC+AGG 0.511175 1_1:+78791919 None:intergenic
AACATGGTGGTCTACTCAAT+GGG 0.514470 1_1:-78791716 Msa0046560:CDS
ATTTGTGCTAAATTTCATGC+TGG 0.516195 1_1:-78789749 Msa0046560:CDS
GCGATTCACTTGAATAAGCA+AGG 0.518180 1_1:+78788815 None:intergenic
ATTAAGGAGTTGATTTCCAA+AGG 0.521590 1_1:-78791076 Msa0046560:CDS
CAACTGTCAAGGGGCAGGGT+GGG 0.523724 1_1:-78789208 Msa0046560:CDS
GATCTTCCATTGTTCCATCA+AGG 0.523766 1_1:+78790714 None:intergenic
GTGGAATTCGGTGGAGCCAT+GGG 0.526067 1_1:+78792030 None:intergenic
TGCATGTAACTGAAGTTGAA+TGG 0.527632 1_1:-78789125 Msa0046560:CDS
ATTGGTGCTTTCAACTGTCA+AGG 0.528036 1_1:-78789219 Msa0046560:CDS
GAATGCTACAAGCCAATAGT+TGG 0.529509 1_1:-78789153 Msa0046560:CDS
GCGTTTGAGTGGCTGGGTGA+TGG 0.533274 1_1:-78788760 Msa0046560:CDS
CCAAAAGAGCACAAGTTTAG+GGG 0.533366 1_1:-78789183 Msa0046560:CDS
AACATGTTGGTCAACCCAAT+TGG 0.534399 1_1:+78788916 None:intergenic
GTTCCAGTCACAAAGTTTGG+TGG 0.534941 1_1:-78788955 Msa0046560:CDS
GCTGGCTCAAGAGCTATTTG+TGG 0.541307 1_1:-78789731 Msa0046560:CDS
GTGGTGCTTGGGGTGGTGTG+AGG 0.542369 1_1:-78790790 Msa0046560:CDS
TAAATTTGGTTGGTGTACTT+GGG 0.545091 1_1:-78791374 Msa0046560:CDS
GTCATTATTTGATTTATCTG+AGG 0.545173 1_1:-78791983 Msa0046560:CDS
AATTCATCAATCTATCAGAT+GGG 0.545924 1_1:+78791788 None:intergenic
AGATCCTAATGGTGATCCAA+TGG 0.546823 1_1:-78789876 Msa0046560:CDS
TCGTTATCATTGATGATGGA+TGG 0.546866 1_1:-78791270 Msa0046560:CDS
TCCTATAATAGCTTATGGAT+GGG 0.546975 1_1:-78789815 Msa0046560:CDS
GCATGTAACTGAAGTTGAAT+GGG 0.548533 1_1:-78789124 Msa0046560:CDS
AGACAATCTCTAGTAGGAAG+AGG 0.549867 1_1:+78789608 None:intergenic
TGTGGAATTCGGTGGAGCCA+TGG 0.550203 1_1:+78792029 None:intergenic
GTCATGATTTATGCTGAAAG+TGG 0.552756 1_1:-78791553 Msa0046560:CDS
TCAATTGAATGGTTCTGAAG+TGG 0.554683 1_1:-78788782 Msa0046560:CDS
CAAAAGGCGGCGTTGAACCA+AGG 0.555881 1_1:-78791294 Msa0046560:CDS
TTGGTGCTTTCAACTGTCAA+GGG 0.555981 1_1:-78789218 Msa0046560:CDS
AGAAGCATCTGATTTGGGTA+AGG 0.557243 1_1:-78789091 Msa0046560:CDS
AAGAAACTTGTGTTCCCTGA+TGG 0.557362 1_1:-78789656 Msa0046560:CDS
CATGCATTATGTGGTGCTTG+GGG 0.560019 1_1:-78790800 Msa0046560:CDS
ATTTAGTTGATAAATTTGGT+TGG 0.560697 1_1:-78791384 Msa0046560:CDS
ATTTATTTGAGTGATAATGT+TGG 0.562359 1_1:-78789701 Msa0046560:CDS
GATCCTAATGGTGATCCAAT+GGG 0.563604 1_1:-78789875 Msa0046560:CDS
AAACATTCTCAGGAACATCA+TGG 0.565376 1_1:+78791929 None:intergenic
TTGCCAAAGCTTACTATGAA+GGG 0.565388 1_1:-78790141 Msa0046560:CDS
CAAAATTTGGAACTTCAACA+AGG 0.568909 1_1:-78789549 Msa0046560:intron
AGGCCAGGTGAAAGTTTGCA+AGG 0.571791 1_1:+78790734 None:intergenic
GCAAAGAATCTTGTTCTTGG+TGG 0.572951 1_1:-78791208 Msa0046560:CDS
TTCAGCAAGATAAGAGTGCA+TGG 0.574107 1_1:+78790619 None:intergenic
AAATGACTGGAAGGCTTCGT+AGG 0.575794 1_1:-78791180 Msa0046560:CDS
AGGCAATATGGTCCAAAACA+AGG 0.578922 1_1:+78788550 None:intergenic
TGCTGAAAGTGGTTCAACAA+AGG 0.580908 1_1:-78791542 Msa0046560:CDS
TATGGTCCAAAACAAGGGAG+GGG 0.582567 1_1:+78788556 None:intergenic
GATTTGAGGACTAAGTTCAA+AGG 0.583446 1_1:-78790845 Msa0046560:CDS
TCCACCACTATTGAACATGT+TGG 0.584769 1_1:+78788903 None:intergenic
GGAACAAAGCAAGTTTCCAT+GGG 0.587236 1_1:-78790037 Msa0046560:CDS
ACCTGGCCTTGATGGAACAA+TGG 0.589366 1_1:-78790720 Msa0046560:CDS
AAAATTGTATAGCTCAAATG+TGG 0.591781 1_1:+78788978 None:intergenic
GGCAATATGGTCCAAAACAA+GGG 0.592551 1_1:+78788551 None:intergenic
AGGTGGGGCATTTGAATCAG+AGG 0.593587 1_1:+78791876 None:intergenic
GGTGGGGCATTTGAATCAGA+GGG 0.593672 1_1:+78791877 None:intergenic
TATAGGAATGATCACAGCAT+AGG 0.594324 1_1:+78791624 None:intergenic
TGGCAAAGCATTAGTTTGGA+TGG 0.596303 1_1:-78791250 Msa0046560:CDS
ATGACATGATCATCAGAACC+TGG 0.596806 1_1:+78791571 None:intergenic
GGCTCAAGAGCTATTTGTGG+TGG 0.597968 1_1:-78789728 Msa0046560:CDS
GATTTGGAATATGTTGAAAG+TGG 0.598008 1_1:-78788871 Msa0046560:CDS
TCAACTGTCAAGGGGCAGGG+TGG 0.598050 1_1:-78789209 Msa0046560:CDS
GAATTGAACATGAGCATTTG+GGG 0.600360 1_1:-78791054 Msa0046560:CDS
ATGGTTTGAAGGCTTTCACA+AGG 0.601600 1_1:-78790868 Msa0046560:CDS
CTTGGTGGTGAACAAATGAC+TGG 0.601615 1_1:-78791193 Msa0046560:CDS
TTGACCAACATGTTCAATAG+TGG 0.601821 1_1:-78788907 Msa0046560:CDS
TGGTTTGAAGGCTTTCACAA+GGG 0.602786 1_1:-78790867 Msa0046560:CDS
GGGTAAGGCAGAAGAGTATG+TGG 0.602965 1_1:-78789076 Msa0046560:CDS
ACCAACATGTTCAATAGTGG+TGG 0.603550 1_1:-78788904 Msa0046560:CDS
GCATTATGTGGTGCTTGGGG+TGG 0.604624 1_1:-78790797 Msa0046560:CDS
CTTCATAGTAAGCTTTGGCA+AGG 0.607720 1_1:+78790143 None:intergenic
TCATCAATGATAACGAACCT+TGG 0.607763 1_1:+78791277 None:intergenic
ATATGGTCCAAAACAAGGGA+GGG 0.611470 1_1:+78788555 None:intergenic
GCAAAGATTAAGGTTAAAGG+TGG 0.619493 1_1:-78788847 Msa0046560:CDS
GGCCAGGTGAAAGTTTGCAA+GGG 0.623453 1_1:+78790735 None:intergenic
TCAGGAACATCATGGAACAA+AGG 0.625935 1_1:+78791937 None:intergenic
TGGTGGTCTACTCAATGGGT+TGG 0.627621 1_1:-78791712 Msa0046560:CDS
AGGCTTCGTAGGCTTGGTGA+AGG 0.628128 1_1:-78791169 Msa0046560:CDS
GTGGTGAACAAATGACTGGA+AGG 0.628570 1_1:-78791189 Msa0046560:CDS
GAAGTGGCGTTTGAGTGGCT+GGG 0.630895 1_1:-78788766 Msa0046560:CDS
TCAACGGTTGTGGAATTCGG+TGG 0.631067 1_1:+78792021 None:intergenic
GTTCTGAAGTGGCGTTTGAG+TGG 0.631457 1_1:-78788771 Msa0046560:CDS
TCATATATAAAACAGTATGG+AGG 0.631649 1_1:-78789246 Msa0046560:intron
CAAAAGAGCACAAGTTTAGG+GGG 0.633226 1_1:-78789182 Msa0046560:CDS
TGGTGCTTTCAACTGTCAAG+GGG 0.636041 1_1:-78789217 Msa0046560:CDS
TTGTATAGCTCAAATGTGGA+TGG 0.640248 1_1:+78788982 None:intergenic
ATTCATCAATCTATCAGATG+GGG 0.644616 1_1:+78791789 None:intergenic
CCAGCAGCCTCATCAATCCA+AGG 0.644799 1_1:+78788718 None:intergenic
AATATGGTCCAAAACAAGGG+AGG 0.648079 1_1:+78788554 None:intergenic
ATGTGGAAGCTTGTGTTGCA+AGG 0.653096 1_1:-78790900 Msa0046560:CDS
GTTTGGATGATGTTTATGTG+TGG 0.662366 1_1:-78790823 Msa0046560:CDS
GAGGGAAAGTTTAAGGCGAG+AGG 0.674257 1_1:-78791964 Msa0046560:CDS
TATGTGTGTGATAAATATGG+AGG 0.686908 1_1:-78790175 Msa0046560:CDS
TGCTGAATCTGGCGTCACAG+GGG 0.702078 1_1:-78790603 Msa0046560:CDS
AACAATGGAAGATCTTGCTG+TGG 0.739747 1_1:-78790705 Msa0046560:CDS
GGATGGTGCTGATCATAACG+AGG 0.786161 1_1:-78791233 Msa0046560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTAACTATTAGTTAATT+TGG + chr1_1:78790116-78790135 None:intergenic 15.0%
!! TATGTACAAAAAAGTTTATA+AGG + chr1_1:78790207-78790226 None:intergenic 15.0%
!!! CAATGTATTTGATTTAAAAA+AGG + chr1_1:78790291-78790310 None:intergenic 15.0%
!! TAAAAAAAGCGATTATTATT+TGG + chr1_1:78790376-78790395 None:intergenic 15.0%
!! CAAAAAAAAAAAAAGCTTAT+AGG + chr1_1:78791282-78791301 None:intergenic 15.0%
!!! TAAGCTTTTTTTTTTTTTGA+AGG - chr1_1:78791283-78791302 Msa0046560:CDS 15.0%
!!! TTTTCATATATAAAACAGTA+TGG - chr1_1:78791340-78791359 Msa0046560:CDS 15.0%
!!! TTAACTTTAATTTGGAATTT+TGG - chr1_1:78791981-78792000 Msa0046560:CDS 15.0%
!!! TCATTATTTGATTTATCTGA+GGG - chr1_1:78788607-78788626 Msa0046560:three_prime_UTR 20.0%
!! ATCATTCCTATAATTGAAAA+AGG - chr1_1:78788976-78788995 Msa0046560:CDS 20.0%
!!! CTAAAACCTTTTTCAATTAT+AGG + chr1_1:78788985-78789004 None:intergenic 20.0%
!!! CTATAATTGAAAAAGGTTTT+AGG - chr1_1:78788983-78789002 Msa0046560:CDS 20.0%
!! CCAAATTTATCAACTAAATT+TGG + chr1_1:78789204-78789223 None:intergenic 20.0%
!!! CCAAATTTAGTTGATAAATT+TGG - chr1_1:78789201-78789220 Msa0046560:CDS 20.0%
!!! ATTTAGTTGATAAATTTGGT+TGG - chr1_1:78789205-78789224 Msa0046560:CDS 20.0%
!! AAGTTCAAAAAATATGAAAG+TGG - chr1_1:78789447-78789466 Msa0046560:intron 20.0%
!!! TTAATCGTTTTTGGATTAAA+AGG + chr1_1:78789498-78789517 None:intergenic 20.0%
!!! TTTTAATCCAAAAACGATTA+AGG - chr1_1:78789497-78789516 Msa0046560:intron 20.0%
!! TGTTGAAATATAATAGTTAG+CGG - chr1_1:78790166-78790185 Msa0046560:CDS 20.0%
!! ACATTATCACTCAAATAAAT+TGG + chr1_1:78790888-78790907 None:intergenic 20.0%
!!! ATTTATTTGAGTGATAATGT+TGG - chr1_1:78790888-78790907 Msa0046560:CDS 20.0%
!! CTTTGCATATTTATTATTGA+TGG - chr1_1:78791119-78791138 Msa0046560:CDS 20.0%
!! GTTATTACATAATAGCTTAT+AGG + chr1_1:78791315-78791334 None:intergenic 20.0%
!! CATTTCTCTTAACTTTAATT+TGG - chr1_1:78791973-78791992 Msa0046560:CDS 20.0%
!! GTCATTATTTGATTTATCTG+AGG - chr1_1:78788606-78788625 Msa0046560:three_prime_UTR 25.0%
!! AAAAAGCAAGAACTTTTTGA+AGG + chr1_1:78788744-78788763 None:intergenic 25.0%
! AATTCATCAATCTATCAGAT+GGG + chr1_1:78788804-78788823 None:intergenic 25.0%
! TGATAGATTGATGAATTCAT+TGG - chr1_1:78788807-78788826 Msa0046560:CDS 25.0%
! GATAGATTGATGAATTCATT+GGG - chr1_1:78788808-78788827 Msa0046560:CDS 25.0%
! ATTTACAAATGGAAACTCAA+TGG - chr1_1:78788914-78788933 Msa0046560:CDS 25.0%
! TATTTAACTGTTAATCCTGT+TGG - chr1_1:78789246-78789265 Msa0046560:intron 25.0%
!!! TATGAAAGTGGATTGTTATT+AGG - chr1_1:78789459-78789478 Msa0046560:intron 25.0%
!! TTTATCTAAGAGTTCTGATT+TGG - chr1_1:78789578-78789597 Msa0046560:CDS 25.0%
!! AAAGAAATTGATGATCTCTT+TGG - chr1_1:78789633-78789652 Msa0046560:CDS 25.0%
!!! AATTTTGGTATTAAGATGTG+TGG + chr1_1:78789832-78789851 None:intergenic 25.0%
! AAAATTGTTGAAGGTTCAAT+TGG - chr1_1:78789909-78789928 Msa0046560:intron 25.0%
! CATGGAATCATAAAAATCAT+TGG + chr1_1:78789955-78789974 None:intergenic 25.0%
! GAATATGTGTGTGATAAATA+TGG - chr1_1:78790411-78790430 Msa0046560:intron 25.0%
! TCCATTTCCATTAAAATTCT+TGG + chr1_1:78790490-78790509 None:intergenic 25.0%
! ATTGTTCCTATAATAGCTTA+TGG - chr1_1:78790769-78790788 Msa0046560:CDS 25.0%
! CATGAAATTTAGCACAAATA+TGG + chr1_1:78790839-78790858 None:intergenic 25.0%
! AAACAACTGTTCTCAAAATT+TGG - chr1_1:78791027-78791046 Msa0046560:CDS 25.0%
! TTATAGGAATACAAGAAACA+CGG + chr1_1:78791266-78791285 None:intergenic 25.0%
! TCATATATAAAACAGTATGG+AGG - chr1_1:78791343-78791362 Msa0046560:CDS 25.0%
!!! AATTGAATTGGTTCAGATTT+TGG + chr1_1:78791577-78791596 None:intergenic 25.0%
! GGTTGAATGATAAATTGAAT+TGG + chr1_1:78791589-78791608 None:intergenic 25.0%
! AAAATTGTATAGCTCAAATG+TGG + chr1_1:78791614-78791633 None:intergenic 25.0%
! ATTGAAATAGAAAGGCAATA+TGG + chr1_1:78792054-78792073 None:intergenic 25.0%
! ATCAGTCAATTGAAATAGAA+AGG + chr1_1:78792062-78792081 None:intergenic 25.0%
TTTATCTGAGGGAAAGTTTA+AGG - chr1_1:78788618-78788637 Msa0046560:three_prime_UTR 30.0%
ATTCATCAATCTATCAGATG+GGG + chr1_1:78788803-78788822 None:intergenic 30.0%
GAATTCATCAATCTATCAGA+TGG + chr1_1:78788805-78788824 None:intergenic 30.0%
AATTCATTGGGTAGTTTCAA+TGG - chr1_1:78788820-78788839 Msa0046560:CDS 30.0%
! AAGACTTTGTCAGTATTTTC+AGG - chr1_1:78788845-78788864 Msa0046560:CDS 30.0%
!!! GTATTTTCAGGTTCAAAACA+TGG - chr1_1:78788857-78788876 Msa0046560:CDS 30.0%
!! ATCTGGTTCTGATTTACAAA+TGG - chr1_1:78788903-78788922 Msa0046560:CDS 30.0%
TCCTTATGATTTGATGAAAG+AGG - chr1_1:78789119-78789138 Msa0046560:CDS 30.0%
AAGAGGCTTATAGTGTTATA+AGG - chr1_1:78789136-78789155 Msa0046560:CDS 30.0%
AGAGGCTTATAGTGTTATAA+GGG - chr1_1:78789137-78789156 Msa0046560:CDS 30.0%
!!! TCTCAACACTTTTAGGTTAT+TGG - chr1_1:78789164-78789183 Msa0046560:CDS 30.0%
! ATAAATTTGGTTGGTGTACT+TGG - chr1_1:78789214-78789233 Msa0046560:CDS 30.0%
! TAAATTTGGTTGGTGTACTT+GGG - chr1_1:78789215-78789234 Msa0046560:CDS 30.0%
!! ATCGTTTTTGGATTAAAAGG+AGG + chr1_1:78789495-78789514 None:intergenic 30.0%
! ATCAACTCCTTAATCGTTTT+TGG + chr1_1:78789507-78789526 None:intergenic 30.0%
! ATTAAGGAGTTGATTTCCAA+AGG - chr1_1:78789513-78789532 Msa0046560:intron 30.0%
AGTGTTCAAAAAAGTGAATG+TGG - chr1_1:78789672-78789691 Msa0046560:CDS 30.0%
!! TAAAAATCATTGGCTTGATC+AGG + chr1_1:78789945-78789964 None:intergenic 30.0%
TATGTGTGTGATAAATATGG+AGG - chr1_1:78790414-78790433 Msa0046560:intron 30.0%
! TCCATTGCCAAGAATTTTAA+TGG - chr1_1:78790480-78790499 Msa0046560:intron 30.0%
TCCATTAAAATTCTTGGCAA+TGG + chr1_1:78790484-78790503 None:intergenic 30.0%
!! GCCAAGAATTTTAATGGAAA+TGG - chr1_1:78790486-78790505 Msa0046560:intron 30.0%
!!! TGCAATGATTTTTTCTTCCT+TGG - chr1_1:78790531-78790550 Msa0046560:intron 30.0%
TTCCTATAATAGCTTATGGA+TGG - chr1_1:78790773-78790792 Msa0046560:CDS 30.0%
TCCTATAATAGCTTATGGAT+GGG - chr1_1:78790774-78790793 Msa0046560:CDS 30.0%
ATTTGTGCTAAATTTCATGC+TGG - chr1_1:78790840-78790859 Msa0046560:CDS 30.0%
! GAGGAAAATGTATGCATTTT+GGG + chr1_1:78790965-78790984 None:intergenic 30.0%
! AGAGGAAAATGTATGCATTT+TGG + chr1_1:78790966-78790985 None:intergenic 30.0%
TTGAAAAGACAATCTCTAGT+AGG + chr1_1:78790990-78791009 None:intergenic 30.0%
!! CAGTTGTTTTGTCAAATAGA+GGG + chr1_1:78791016-78791035 None:intergenic 30.0%
!! ACAGTTGTTTTGTCAAATAG+AGG + chr1_1:78791017-78791036 None:intergenic 30.0%
! CAAAATTTGGAACTTCAACA+AGG - chr1_1:78791040-78791059 Msa0046560:CDS 30.0%
! TAGTTGCTAGTATTGAAGTT+TGG + chr1_1:78791091-78791110 None:intergenic 30.0%
!! AAGAAAGAAGCATCTGATTT+GGG - chr1_1:78791493-78791512 Msa0046560:CDS 30.0%
AACATCAAATTTGCACCAAT+TGG - chr1_1:78791658-78791677 Msa0046560:CDS 30.0%
ACATCAAATTTGCACCAATT+GGG - chr1_1:78791659-78791678 Msa0046560:CDS 30.0%
! GATTTGGAATATGTTGAAAG+TGG - chr1_1:78791718-78791737 Msa0046560:CDS 30.0%
CCATTCAATTGAAACTTCTT+TGG + chr1_1:78791799-78791818 None:intergenic 30.0%
CCAAAGAAGTTTCAATTGAA+TGG - chr1_1:78791796-78791815 Msa0046560:CDS 30.0%
!! CTCAGTTTTGATGAGATCAA+CGG + chr1_1:78788587-78788606 None:intergenic 35.0%
AAACATTCTCAGGAACATCA+TGG + chr1_1:78788663-78788682 None:intergenic 35.0%
GAACTGAAAGAAACATTCTC+AGG + chr1_1:78788673-78788692 None:intergenic 35.0%
!! AGAACTTTTTGAAGGAGTGA+AGG + chr1_1:78788736-78788755 None:intergenic 35.0%
!!! GTTCTTGCTTTTTCTCACAA+AGG - chr1_1:78788751-78788770 Msa0046560:CDS 35.0%
!!! TTTTCAGGTTCAAAACATGG+TGG - chr1_1:78788860-78788879 Msa0046560:CDS 35.0%
! ACAGCATAGGATTTGATTTC+AGG + chr1_1:78788955-78788974 None:intergenic 35.0%
TATAGGAATGATCACAGCAT+AGG + chr1_1:78788968-78788987 None:intergenic 35.0%
GTCATGATTTATGCTGAAAG+TGG - chr1_1:78789036-78789055 Msa0046560:CDS 35.0%
GCCTCTTTCATCAAATCATA+AGG + chr1_1:78789123-78789142 None:intergenic 35.0%
!! AATCCTGTTGGTGTTTTTCA+TGG - chr1_1:78789258-78789277 Msa0046560:intron 35.0%
! TCATCAATGATAACGAACCT+TGG + chr1_1:78789315-78789334 None:intergenic 35.0%
AGGTTCGTTATCATTGATGA+TGG - chr1_1:78789315-78789334 Msa0046560:intron 35.0%
!! TCGTTATCATTGATGATGGA+TGG - chr1_1:78789319-78789338 Msa0046560:intron 35.0%
GATGCAAAGAATCTTGTTCT+TGG - chr1_1:78789378-78789397 Msa0046560:intron 35.0%
GGATTAAAAGGAGGTGAATT+AGG + chr1_1:78789486-78789505 None:intergenic 35.0%
ATGCTCATGTTCAATTCCTT+TGG + chr1_1:78789532-78789551 None:intergenic 35.0%
AGGAATTGAACATGAGCATT+TGG - chr1_1:78789533-78789552 Msa0046560:intron 35.0%
GGAATTGAACATGAGCATTT+GGG - chr1_1:78789534-78789553 Msa0046560:intron 35.0%
GAATTGAACATGAGCATTTG+GGG - chr1_1:78789535-78789554 Msa0046560:intron 35.0%
! GAAATTGATGATCTCTTTGG+TGG - chr1_1:78789636-78789655 Msa0046560:CDS 35.0%
GATTTGAGGACTAAGTTCAA+AGG - chr1_1:78789744-78789763 Msa0046560:CDS 35.0%
GTTTGGATGATGTTTATGTG+TGG - chr1_1:78789766-78789785 Msa0046560:CDS 35.0%
! AAGTTTGCAAGGGACAATTT+TGG + chr1_1:78789847-78789866 None:intergenic 35.0%
GCTGTGGTTAAAATTGTTGA+AGG - chr1_1:78789900-78789919 Msa0046560:intron 35.0%
! GACTATTGTAGTGTTTGTTG+TGG - chr1_1:78790350-78790369 Msa0046560:intron 35.0%
TTGCCAAAGCTTACTATGAA+GGG - chr1_1:78790448-78790467 Msa0046560:intron 35.0%
TAACCCTTCATAGTAAGCTT+TGG + chr1_1:78790454-78790473 None:intergenic 35.0%
! AAGTTGTGATTTTTGTGTGC+AGG - chr1_1:78790672-78790691 Msa0046560:CDS 35.0%
! AGTTGTGATTTTTGTGTGCA+GGG - chr1_1:78790673-78790692 Msa0046560:CDS 35.0%
!!! TTTTGGTTCCAAGATCCTAA+TGG - chr1_1:78790702-78790721 Msa0046560:CDS 35.0%
TCCCATCCATAAGCTATTAT+AGG + chr1_1:78790778-78790797 None:intergenic 35.0%
!!! ATTTTGGGATTGTACCATCA+GGG + chr1_1:78790950-78790969 None:intergenic 35.0%
TATTATCTTACACCGACACA+TGG - chr1_1:78791165-78791184 Msa0046560:CDS 35.0%
TTAAATGTGACTCCATGTGT+CGG + chr1_1:78791180-78791199 None:intergenic 35.0%
TGCATGTAACTGAAGTTGAA+TGG - chr1_1:78791464-78791483 Msa0046560:CDS 35.0%
GCATGTAACTGAAGTTGAAT+GGG - chr1_1:78791465-78791484 Msa0046560:CDS 35.0%
!! GAAGAAAGAAGCATCTGATT+TGG - chr1_1:78791492-78791511 Msa0046560:CDS 35.0%
TTGTATAGCTCAAATGTGGA+TGG + chr1_1:78791610-78791629 None:intergenic 35.0%
TTTGTTCCAGTCACAAAGTT+TGG - chr1_1:78791631-78791650 Msa0046560:CDS 35.0%
TTGACCAACATGTTCAATAG+TGG - chr1_1:78791682-78791701 Msa0046560:CDS 35.0%
TGGTGGAACAATTCTTGATT+TGG - chr1_1:78791702-78791721 Msa0046560:CDS 35.0%
TGAAAGTGGTGCAAAGATTA+AGG - chr1_1:78791732-78791751 Msa0046560:CDS 35.0%
GGTGCAAAGATTAAGGTTAA+AGG - chr1_1:78791739-78791758 Msa0046560:CDS 35.0%
GCAAAGATTAAGGTTAAAGG+TGG - chr1_1:78791742-78791761 Msa0046560:CDS 35.0%
AAGATTAAGGTTAAAGGTGG+TGG - chr1_1:78791745-78791764 Msa0046560:CDS 35.0%
!! TCAATTGAATGGTTCTGAAG+TGG - chr1_1:78791807-78791826 Msa0046560:CDS 35.0%
! AATTGACTCTCAATGTTCCT+TGG - chr1_1:78791854-78791873 Msa0046560:CDS 35.0%
!!! TCCGTTTTTTTTGCTTCCCA+TGG - chr1_1:78788543-78788562 Msa0046560:three_prime_UTR 40.0%
GCCATGGGAAGCAAAAAAAA+CGG + chr1_1:78788547-78788566 None:intergenic 40.0%
AGATCAACGGTTGTGGAATT+CGG + chr1_1:78788574-78788593 None:intergenic 40.0%
TTTGATGAGATCAACGGTTG+TGG + chr1_1:78788581-78788600 None:intergenic 40.0%
TCAGGAACATCATGGAACAA+AGG + chr1_1:78788655-78788674 None:intergenic 40.0%
!! TTTTTGAAGGAGTGAAGGTG+GGG + chr1_1:78788731-78788750 None:intergenic 40.0%
!! CTTTTTGAAGGAGTGAAGGT+GGG + chr1_1:78788732-78788751 None:intergenic 40.0%
!! ACTTTTTGAAGGAGTGAAGG+TGG + chr1_1:78788733-78788752 None:intergenic 40.0%
!!! CTTGCTTTTTCTCACAAAGG+TGG - chr1_1:78788754-78788773 Msa0046560:CDS 40.0%
TCTCACAAAGGTGGTTTCTT+TGG - chr1_1:78788763-78788782 Msa0046560:CDS 40.0%
TCTATCAGATGGGGTTTCAT+TGG + chr1_1:78788794-78788813 None:intergenic 40.0%
AAACATGGTGGTCTACTCAA+TGG - chr1_1:78788872-78788891 Msa0046560:CDS 40.0%
AACATGGTGGTCTACTCAAT+GGG - chr1_1:78788873-78788892 Msa0046560:CDS 40.0%
!! ACTCAATGGGTTGGTAAATC+TGG - chr1_1:78788886-78788905 Msa0046560:CDS 40.0%
!!! TTTAGGTCTGCACTTTTTCC+AGG - chr1_1:78789000-78789019 Msa0046560:CDS 40.0%
ATGACATGATCATCAGAACC+TGG + chr1_1:78789021-78789040 None:intergenic 40.0%
TGCTGAAAGTGGTTCAACAA+AGG - chr1_1:78789047-78789066 Msa0046560:CDS 40.0%
! GGGTTCATCTCAACACTTTT+AGG - chr1_1:78789157-78789176 Msa0046560:CDS 40.0%
AGACCATGAAAAACACCAAC+AGG + chr1_1:78789264-78789283 None:intergenic 40.0%
!! TGGTGTTTTTCATGGTCTTG+AGG - chr1_1:78789266-78789285 Msa0046560:intron 40.0%
!! GGTGTTTTTCATGGTCTTGA+GGG - chr1_1:78789267-78789286 Msa0046560:intron 40.0%
!! GGTCTTGAGGGTTTTTCAAA+AGG - chr1_1:78789279-78789298 Msa0046560:intron 40.0%
!! CTTGAGGGTTTTTCAAAAGG+CGG - chr1_1:78789282-78789301 Msa0046560:intron 40.0%
! TGGATGGCAAAGCATTAGTT+TGG - chr1_1:78789335-78789354 Msa0046560:intron 40.0%
! TGGCAAAGCATTAGTTTGGA+TGG - chr1_1:78789339-78789358 Msa0046560:intron 40.0%
GCAAAGAATCTTGTTCTTGG+TGG - chr1_1:78789381-78789400 Msa0046560:intron 40.0%
AAGCTTGTGTTGCAAGGAAA+AGG - chr1_1:78789695-78789714 Msa0046560:CDS 40.0%
TGTTGCAAGGAAAAGGAGTA+TGG - chr1_1:78789702-78789721 Msa0046560:CDS 40.0%
! GGAAAAGGAGTATGGTTTGA+AGG - chr1_1:78789710-78789729 Msa0046560:CDS 40.0%
ATGGTTTGAAGGCTTTCACA+AGG - chr1_1:78789721-78789740 Msa0046560:CDS 40.0%
TGGTTTGAAGGCTTTCACAA+GGG - chr1_1:78789722-78789741 Msa0046560:CDS 40.0%
GAGGACTAAGTTCAAAGGTT+TGG - chr1_1:78789749-78789768 Msa0046560:CDS 40.0%
TATGTGTGGCATGCATTATG+TGG - chr1_1:78789780-78789799 Msa0046560:CDS 40.0%
GTATTAAGATGTGTGGTTCC+TGG + chr1_1:78789825-78789844 None:intergenic 40.0%
GATCTTCCATTGTTCCATCA+AGG + chr1_1:78789878-78789897 None:intergenic 40.0%
AACAATGGAAGATCTTGCTG+TGG - chr1_1:78789884-78789903 Msa0046560:CDS 40.0%
! TTCAGCAAGATAAGAGTGCA+TGG + chr1_1:78789973-78789992 None:intergenic 40.0%
CACTCTTATCTTGCTGAATC+TGG - chr1_1:78789975-78789994 Msa0046560:intron 40.0%
! CTTCATAGTAAGCTTTGGCA+AGG + chr1_1:78790449-78790468 None:intergenic 40.0%
CTTGCCAAAGCTTACTATGA+AGG - chr1_1:78790447-78790466 Msa0046560:intron 40.0%
! TGGAAACTTGCTTTGTTCCA+AGG + chr1_1:78790551-78790570 None:intergenic 40.0%
TGGAACAAAGCAAGTTTCCA+TGG - chr1_1:78790551-78790570 Msa0046560:intron 40.0%
GGAACAAAGCAAGTTTCCAT+GGG - chr1_1:78790552-78790571 Msa0046560:intron 40.0%
! GTTGTGATTTTTGTGTGCAG+GGG - chr1_1:78790674-78790693 Msa0046560:CDS 40.0%
TTGGATCACCATTAGGATCT+TGG + chr1_1:78790713-78790732 None:intergenic 40.0%
AGATCCTAATGGTGATCCAA+TGG - chr1_1:78790713-78790732 Msa0046560:CDS 40.0%
GATCCTAATGGTGATCCAAT+GGG - chr1_1:78790714-78790733 Msa0046560:CDS 40.0%
TGTAACCAAAAAGCTCCCAT+TGG + chr1_1:78790732-78790751 None:intergenic 40.0%
!!! ATGGGAGCTTTTTGGTTACA+AGG - chr1_1:78790732-78790751 Msa0046560:CDS 40.0%
ACAGATGATTCGACCTGATT+GGG - chr1_1:78790797-78790816 Msa0046560:CDS 40.0%
AAGAAACTTGTGTTCCCTGA+TGG - chr1_1:78790933-78790952 Msa0046560:CDS 40.0%
!!! CATTTTGGGATTGTACCATC+AGG + chr1_1:78790951-78790970 None:intergenic 40.0%
AGACAATCTCTAGTAGGAAG+AGG + chr1_1:78790984-78791003 None:intergenic 40.0%
AAACAGTATGGAGGAGTGAT+TGG - chr1_1:78791352-78791371 Msa0046560:CDS 40.0%
! ATTGGTGCTTTCAACTGTCA+AGG - chr1_1:78791370-78791389 Msa0046560:CDS 40.0%
! TTGGTGCTTTCAACTGTCAA+GGG - chr1_1:78791371-78791390 Msa0046560:CDS 40.0%
! ACCCAAAAGAGCACAAGTTT+AGG - chr1_1:78791404-78791423 Msa0046560:CDS 40.0%
! CCCTAAACTTGTGCTCTTTT+GGG + chr1_1:78791408-78791427 None:intergenic 40.0%
! CCCAAAAGAGCACAAGTTTA+GGG - chr1_1:78791405-78791424 Msa0046560:CDS 40.0%
! CCAAAAGAGCACAAGTTTAG+GGG - chr1_1:78791406-78791425 Msa0046560:CDS 40.0%
! CAAAAGAGCACAAGTTTAGG+GGG - chr1_1:78791407-78791426 Msa0046560:CDS 40.0%
!! CTATTGGCTTGTAGCATTCA+GGG + chr1_1:78791435-78791454 None:intergenic 40.0%
!! ACTATTGGCTTGTAGCATTC+AGG + chr1_1:78791436-78791455 None:intergenic 40.0%
GAATGCTACAAGCCAATAGT+TGG - chr1_1:78791436-78791455 Msa0046560:CDS 40.0%
ACATGCACAGTACCAACTAT+TGG + chr1_1:78791451-78791470 None:intergenic 40.0%
!! AGAAGCATCTGATTTGGGTA+AGG - chr1_1:78791498-78791517 Msa0046560:CDS 40.0%
AACATGTTGGTCAACCCAAT+TGG + chr1_1:78791676-78791695 None:intergenic 40.0%
ACCAACATGTTCAATAGTGG+TGG - chr1_1:78791685-78791704 Msa0046560:CDS 40.0%
TCCACCACTATTGAACATGT+TGG + chr1_1:78791689-78791708 None:intergenic 40.0%
GCGATTCACTTGAATAAGCA+AGG + chr1_1:78791777-78791796 None:intergenic 40.0%
CAATGTTCCTTGGATTGATG+AGG - chr1_1:78791864-78791883 Msa0046560:CDS 40.0%
!!! TTTTTTCCCCTCCCTTGTTT+TGG - chr1_1:78792027-78792046 Msa0046560:CDS 40.0%
ATATGGTCCAAAACAAGGGA+GGG + chr1_1:78792037-78792056 None:intergenic 40.0%
AATATGGTCCAAAACAAGGG+AGG + chr1_1:78792038-78792057 None:intergenic 40.0%
GGCAATATGGTCCAAAACAA+GGG + chr1_1:78792041-78792060 None:intergenic 40.0%
AGGCAATATGGTCCAAAACA+AGG + chr1_1:78792042-78792061 None:intergenic 40.0%
!! CTTGGTGGTGAACAAATGAC+TGG - chr1_1:78789396-78789415 Msa0046560:intron 45.0%
GTGGTGAACAAATGACTGGA+AGG - chr1_1:78789400-78789419 Msa0046560:intron 45.0%
AAATGACTGGAAGGCTTCGT+AGG - chr1_1:78789409-78789428 Msa0046560:intron 45.0%
ATGTGGAAGCTTGTGTTGCA+AGG - chr1_1:78789689-78789708 Msa0046560:CDS 45.0%
AGGCTTTCACAAGGGATTTG+AGG - chr1_1:78789730-78789749 Msa0046560:CDS 45.0%
GCATGCATTATGTGGTGCTT+GGG - chr1_1:78789788-78789807 Msa0046560:CDS 45.0%
CATGCATTATGTGGTGCTTG+GGG - chr1_1:78789789-78789808 Msa0046560:CDS 45.0%
!! AAACTTTCACCTGGCCTTGA+TGG - chr1_1:78789861-78789880 Msa0046560:CDS 45.0%
CAAGTTTCCATGGGAAGAGT+TGG - chr1_1:78790561-78790580 Msa0046560:intron 45.0%
TTGCTTACCAACTCTTCCCA+TGG + chr1_1:78790571-78790590 None:intergenic 45.0%
! GTGATCCAATGGGAGCTTTT+TGG - chr1_1:78790724-78790743 Msa0046560:CDS 45.0%
GACAGATGATTCGACCTGAT+TGG - chr1_1:78790796-78790815 Msa0046560:CDS 45.0%
GACTGAAACATGTCCCAATC+AGG + chr1_1:78790813-78790832 None:intergenic 45.0%
TGGTGCTTTCAACTGTCAAG+GGG - chr1_1:78791372-78791391 Msa0046560:CDS 45.0%
! CCCCTAAACTTGTGCTCTTT+TGG + chr1_1:78791409-78791428 None:intergenic 45.0%
GTTCCAGTCACAAAGTTTGG+TGG - chr1_1:78791634-78791653 Msa0046560:CDS 45.0%
TTGCCACCAAACTTTGTGAC+TGG + chr1_1:78791640-78791659 None:intergenic 45.0%
TATGGTCCAAAACAAGGGAG+GGG + chr1_1:78792036-78792055 None:intergenic 45.0%
TCAACGGTTGTGGAATTCGG+TGG + chr1_1:78788571-78788590 None:intergenic 50.0%
! GAGGGAAAGTTTAAGGCGAG+AGG - chr1_1:78788625-78788644 Msa0046560:three_prime_UTR 50.0%
! GGTGGGGCATTTGAATCAGA+GGG + chr1_1:78788715-78788734 None:intergenic 50.0%
! AGGTGGGGCATTTGAATCAG+AGG + chr1_1:78788716-78788735 None:intergenic 50.0%
TGGTGGTCTACTCAATGGGT+TGG - chr1_1:78788877-78788896 Msa0046560:CDS 50.0%
!! GGATGGTGCTGATCATAACG+AGG - chr1_1:78789356-78789375 Msa0046560:intron 50.0%
GGCATGCATTATGTGGTGCT+TGG - chr1_1:78789787-78789806 Msa0046560:CDS 50.0%
GTCCCTTGCAAACTTTCACC+TGG - chr1_1:78789852-78789871 Msa0046560:CDS 50.0%
GGCCAGGTGAAAGTTTGCAA+GGG + chr1_1:78789857-78789876 None:intergenic 50.0%
AGGCCAGGTGAAAGTTTGCA+AGG + chr1_1:78789858-78789877 None:intergenic 50.0%
!! ACCTGGCCTTGATGGAACAA+TGG - chr1_1:78789869-78789888 Msa0046560:CDS 50.0%
TCCATTGTTCCATCAAGGCC+AGG + chr1_1:78789873-78789892 None:intergenic 50.0%
TTGCTGAATCTGGCGTCACA+GGG - chr1_1:78789985-78790004 Msa0046560:intron 50.0%
GCTCCCATTGGATCACCATT+AGG + chr1_1:78790720-78790739 None:intergenic 50.0%
! GCTGGCTCAAGAGCTATTTG+TGG - chr1_1:78790858-78790877 Msa0046560:CDS 50.0%
GGCTCAAGAGCTATTTGTGG+TGG - chr1_1:78790861-78790880 Msa0046560:CDS 50.0%
CTTTCAACTGTCAAGGGGCA+GGG - chr1_1:78791377-78791396 Msa0046560:CDS 50.0%
! GGGTAAGGCAGAAGAGTATG+TGG - chr1_1:78791513-78791532 Msa0046560:CDS 50.0%
!! GTTCTGAAGTGGCGTTTGAG+TGG - chr1_1:78791818-78791837 Msa0046560:CDS 50.0%
! GGCTGCTGGTGTTTCTGATT+TGG - chr1_1:78791885-78791904 Msa0046560:CDS 50.0%
! GTGGAATTCGGTGGAGCCAT+GGG + chr1_1:78788562-78788581 None:intergenic 55.0%
! TGTGGAATTCGGTGGAGCCA+TGG + chr1_1:78788563-78788582 None:intergenic 55.0%
! CAAAAGGCGGCGTTGAACCA+AGG - chr1_1:78789295-78789314 Msa0046560:intron 55.0%
ACTGGAAGGCTTCGTAGGCT+TGG - chr1_1:78789414-78789433 Msa0046560:intron 55.0%
!! AGGCTTCGTAGGCTTGGTGA+AGG - chr1_1:78789420-78789439 Msa0046560:intron 55.0%
GCATTATGTGGTGCTTGGGG+TGG - chr1_1:78789792-78789811 Msa0046560:CDS 55.0%
CTTGCTGAATCTGGCGTCAC+AGG - chr1_1:78789984-78790003 Msa0046560:intron 55.0%
TGCTGAATCTGGCGTCACAG+GGG - chr1_1:78789986-78790005 Msa0046560:intron 55.0%
! TGTGTGCAGGGGACGACTTT+TGG - chr1_1:78790685-78790704 Msa0046560:CDS 55.0%
GCTTTCAACTGTCAAGGGGC+AGG - chr1_1:78791376-78791395 Msa0046560:CDS 55.0%
TGAAGTGGCGTTTGAGTGGC+TGG - chr1_1:78791822-78791841 Msa0046560:CDS 55.0%
GAAGTGGCGTTTGAGTGGCT+GGG - chr1_1:78791823-78791842 Msa0046560:CDS 55.0%
CCAGCAGCCTCATCAATCCA+AGG + chr1_1:78791874-78791893 None:intergenic 55.0%
CCTTGGATTGATGAGGCTGC+TGG - chr1_1:78791871-78791890 Msa0046560:CDS 55.0%
TCAACTGTCAAGGGGCAGGG+TGG - chr1_1:78791380-78791399 Msa0046560:CDS 60.0%
CAACTGTCAAGGGGCAGGGT+GGG - chr1_1:78791381-78791400 Msa0046560:CDS 60.0%
GCGTTTGAGTGGCTGGGTGA+TGG - chr1_1:78791829-78791848 Msa0046560:CDS 60.0%
GTGGTGCTTGGGGTGGTGTG+AGG - chr1_1:78789799-78789818 Msa0046560:CDS 65.0%
GCTTGGGGTGGTGTGAGGCC+AGG - chr1_1:78789804-78789823 Msa0046560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78788521 78792090 78788521 ID=Msa0046560;Name=Msa0046560
chr1_1 mRNA 78788521 78792090 78788521 ID=Msa0046560-mRNA-1;Parent=Msa0046560;Name=Msa0046560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=41|1|1|1|1|1|4|169|858
chr1_1 exon 78788521 78789253 78788521 ID=Msa0046560-mRNA-1:exon:27143;Parent=Msa0046560-mRNA-1
chr1_1 exon 78789550 78789917 78789550 ID=Msa0046560-mRNA-1:exon:27142;Parent=Msa0046560-mRNA-1
chr1_1 exon 78790029 78790206 78790029 ID=Msa0046560-mRNA-1:exon:27141;Parent=Msa0046560-mRNA-1
chr1_1 exon 78790583 78792090 78790583 ID=Msa0046560-mRNA-1:exon:27140;Parent=Msa0046560-mRNA-1
chr1_1 five_prime_UTR 78792050 78792090 78792050 ID=Msa0046560-mRNA-1:five_prime_utr;Parent=Msa0046560-mRNA-1
chr1_1 CDS 78790583 78792049 78790583 ID=Msa0046560-mRNA-1:cds;Parent=Msa0046560-mRNA-1
chr1_1 CDS 78790029 78790206 78790029 ID=Msa0046560-mRNA-1:cds;Parent=Msa0046560-mRNA-1
chr1_1 CDS 78789550 78789917 78789550 ID=Msa0046560-mRNA-1:cds;Parent=Msa0046560-mRNA-1
chr1_1 CDS 78788690 78789253 78788690 ID=Msa0046560-mRNA-1:cds;Parent=Msa0046560-mRNA-1
chr1_1 three_prime_UTR 78788521 78788689 78788521 ID=Msa0046560-mRNA-1:three_prime_utr;Parent=Msa0046560-mRNA-1
Gene Sequence

>Msa0046560

ATGGCTCCACCGAATTCCACAACCGTTGATCTCATCAAAACTGAGTCATTATTTGATTTATCTGAGGGAAAGTTTAAGGCGAGAGGTGTTCCTTTGTTCCATGATGTTCCTGAGAATGTTTCTTTCAGTTCATTCTCTTCTATATGCAAACCCTCTGATTCAAATGCCCCACCTTCACTCCTTCAAAAAGTTCTTGCTTTTTCTCACAAAGGTGGTTTCTTTGGATTCTCCAATGAAACCCCATCTGATAGATTGATGAATTCATTGGGTAGTTTCAATGGAAAAGACTTTGTCAGTATTTTCAGGTTCAAAACATGGTGGTCTACTCAATGGGTTGGTAAATCTGGTTCTGATTTACAAATGGAAACTCAATGGATTCTTTTTGATATTCCTGAAATCAAATCCTATGCTGTGATCATTCCTATAATTGAAAAAGGTTTTAGGTCTGCACTTTTTCCAGGTTCTGATGATCATGTCATGATTTATGCTGAAAGTGGTTCAACAAAGGTGAAAGAATCATGTTTCAATGCTATTGCTTATGTTCATTTTTCTGAAAATCCTTATGATTTGATGAAAGAGGCTTATAGTGTTATAAGGGTTCATCTCAACACTTTTAGGTTATTGGAAGAGAAAACACTACCAAATTTAGTTGATAAATTTGGTTGGTGTACTTGGGATGCTTTCTATTTAACTGTTAATCCTGTTGGTGTTTTTCATGGTCTTGAGGGTTTTTCAAAAGGCGGCGTTGAACCAAGGTTCGTTATCATTGATGATGGATGGCAAAGCATTAGTTTGGATGGTGCTGATCATAACGAGGATGCAAAGAATCTTGTTCTTGGTGGTGAACAAATGACTGGAAGGCTTCGTAGGCTTGGTGAAGGAGACAAGTTCAAAAAATATGAAAGTGGATTGTTATTAGGTCCTAATTCACCTCCTTTTAATCCAAAAACGATTAAGGAGTTGATTTCCAAAGGAATTGAACATGAGCATTTGGGGAAGCAAAGAGATCAAGCAATTTTATCTAAGAGTTCTGATTTGGCTGAGATTGAGTCAAAGATCAAGAAACTGATAAAAGAAATTGATGATCTCTTTGGTGGAGAACAAAGTAGTAGTGTTCAAAAAAGTGAATGTGGAAGCTTGTGTTGCAAGGAAAAGGAGTATGGTTTGAAGGCTTTCACAAGGGATTTGAGGACTAAGTTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCATTATGTGGTGCTTGGGGTGGTGTGAGGCCAGGAACCACACATCTTAATACCAAAATTGTCCCTTGCAAACTTTCACCTGGCCTTGATGGAACAATGGAAGATCTTGCTGTGGTTAAAATTGTTGAAGGTTCAATTGGACTAGTTGATCCTGATCAAGCCAATGATTTTTATGATTCCATGCACTCTTATCTTGCTGAATCTGGCGTCACAGGGGTCAAAGTTGATGTCATTCATTGTCTTGAATATGTGTGTGATAAATATGGAGGCAGAGTTGACCTTGCCAAAGCTTACTATGAAGGGTTAACAAAATCCATTGCCAAGAATTTTAATGGAAATGGAATCATTGCTAGCATGCAACAGTGCAATGATTTTTTCTTCCTTGGAACAAAGCAAGTTTCCATGGGAAGAGTTGGGGACGACTTTTGGTTCCAAGATCCTAATGGTGATCCAATGGGAGCTTTTTGGTTACAAGGTGTGCACATGATTCATTGTTCCTATAATAGCTTATGGATGGGACAGATGATTCGACCTGATTGGGACATGTTTCAGTCAGACCATATTTGTGCTAAATTTCATGCTGGCTCAAGAGCTATTTGTGGTGGTCCAATTTATTTGAGTGATAATGTTGGCTCTCACGACTTTGATCTGATTAAGAAACTTGTGTTCCCTGATGGTACAATCCCAAAATGCATACATTTTCCTCTTCCTACTAGAGATTGTCTTTTCAAAAACCCTCTATTTGACAAAACAACTGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGGTGGGACCCAAAAGAGCACAAGTTTAGGGGGTTCCCTGAATGCTACAAGCCAATAGTTGGTACTGTGCATGTAACTGAAGTTGAATGGGATCAGAAGAAAGAAGCATCTGATTTGGGTAAGGCAGAAGAGTATGTGGTCTACTTCAATCAAGCTGAAGAACTTTCTTTGATGACTCCAAAATCTGAACCAATTCAATTTATCATTCAACCATCCACATTTGAGCTATACAATTTTGTTCCAGTCACAAAGTTTGGTGGCAACATCAAATTTGCACCAATTGGGTTGACCAACATGTTCAATAGTGGTGGAACAATTCTTGATTTGGAATATGTTGAAAGTGGTGCAAAGATTAAGGTTAAAGGTGGTGGAAATTTCCTTGCTTATTCAAGTGAATCGCCAAAGAAGTTTCAATTGAATGGTTCTGAAGTGGCGTTTGAGTGGCTGGGTGATGGAAAATTGACTCTCAATGTTCCTTGGATTGATGAGGCTGCTGGTGTTTCTGATTTGGCAATTTTTTTCTAG
Protein sequence

>Msa0046560

MAPPNSTTVDLIKTESLFDLSEGKFKARGVPLFHDVPENVSFSSFSSICKPSDSNAPPSLLQKVLAFSHKGGFFGFSNETPSDRLMNSLGSFNGKDFVSIFRFKTWWSTQWVGKSGSDLQMETQWILFDIPEIKSYAVIIPIIEKGFRSALFPGSDDHVMIYAESGSTKVKESCFNAIAYVHFSENPYDLMKEAYSVIRVHLNTFRLLEEKTLPNLVDKFGWCTWDAFYLTVNPVGVFHGLEGFSKGGVEPRFVIIDDGWQSISLDGADHNEDAKNLVLGGEQMTGRLRRLGEGDKFKKYESGLLLGPNSPPFNPKTIKELISKGIEHEHLGKQRDQAILSKSSDLAEIESKIKKLIKEIDDLFGGEQSSSVQKSECGSLCCKEKEYGLKAFTRDLRTKFKGLDDVYVWHALCGAWGGVRPGTTHLNTKIVPCKLSPGLDGTMEDLAVVKIVEGSIGLVDPDQANDFYDSMHSYLAESGVTGVKVDVIHCLEYVCDKYGGRVDLAKAYYEGLTKSIAKNFNGNGIIASMQQCNDFFFLGTKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWMGQMIRPDWDMFQSDHICAKFHAGSRAICGGPIYLSDNVGSHDFDLIKKLVFPDGTIPKCIHFPLPTRDCLFKNPLFDKTTVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPIVGTVHVTEVEWDQKKEASDLGKAEEYVVYFNQAEELSLMTPKSEPIQFIIQPSTFELYNFVPVTKFGGNIKFAPIGLTNMFNSGGTILDLEYVESGAKIKVKGGGNFLAYSSESPKKFQLNGSEVAFEWLGDGKLTLNVPWIDEAAGVSDLAIFF*