Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168310 | 6VCW_A | 99.744 | 390 | 1 | 0 | 1 | 390 | 4 | 393 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168310 | sp|Q6SYB9|METK2_TOBAC | 93.333 | 390 | 26 | 0 | 1 | 390 | 1 | 390 | 0.0 | 755 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168310 | G7L3W1 | 99.744 | 390 | 1 | 0 | 1 | 390 | 1 | 390 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa1168310 | 0.814612 | 1.410269e-51 | -8.615850e-47 |
| Msa0030070 | Msa1168310 | 0.818530 | 1.868159e-52 | -8.615850e-47 |
| Msa0037680 | Msa1168310 | 0.820149 | 7.990408e-53 | -8.615850e-47 |
| Msa0045620 | Msa1168310 | 0.803098 | 4.098762e-49 | -8.615850e-47 |
| Msa0050150 | Msa1168310 | 0.815329 | 9.775947e-52 | -8.615850e-47 |
| Msa0080370 | Msa1168310 | 0.807115 | 5.918011e-50 | -8.615850e-47 |
| Msa0080440 | Msa1168310 | 0.805035 | 1.621241e-49 | -8.615850e-47 |
| Msa0091350 | Msa1168310 | 0.804760 | 1.850275e-49 | -8.615850e-47 |
| Msa0092350 | Msa1168310 | 0.851981 | 6.227829e-61 | -8.615850e-47 |
| Msa0100600 | Msa1168310 | 0.824333 | 8.541921e-54 | -8.615850e-47 |
| Msa0100890 | Msa1168310 | 0.809635 | 1.716613e-50 | -8.615850e-47 |
| Msa0607800 | Msa1168310 | 0.804499 | 2.098060e-49 | -8.615850e-47 |
| Msa0618840 | Msa1168310 | 0.825255 | 5.178878e-54 | -8.615850e-47 |
| Msa0618990 | Msa1168310 | 0.838096 | 3.521551e-57 | -8.615850e-47 |
| Msa0625620 | Msa1168310 | 0.848200 | 7.130999e-60 | -8.615850e-47 |
| Msa0640800 | Msa1168310 | 0.814802 | 1.279611e-51 | -8.615850e-47 |
| Msa0647440 | Msa1168310 | 0.804892 | 1.737131e-49 | -8.615850e-47 |
| Msa0648040 | Msa1168310 | 0.814573 | 1.438132e-51 | -8.615850e-47 |
| Msa0659200 | Msa1168310 | 0.837155 | 6.142605e-57 | -8.615850e-47 |
| Msa0688380 | Msa1168310 | 0.809030 | 2.314337e-50 | -8.615850e-47 |
| Msa0689660 | Msa1168310 | 0.809414 | 1.915073e-50 | -8.615850e-47 |
| Msa0690740 | Msa1168310 | 0.818019 | 2.438341e-52 | -8.615850e-47 |
| Msa0698730 | Msa1168310 | 0.814559 | 1.448529e-51 | -8.615850e-47 |
| Msa0705180 | Msa1168310 | 0.835515 | 1.604725e-56 | -8.615850e-47 |
| Msa0707260 | Msa1168310 | 0.835840 | 1.327552e-56 | -8.615850e-47 |
| Msa0708980 | Msa1168310 | 0.841785 | 3.847988e-58 | -8.615850e-47 |
| Msa0717900 | Msa1168310 | 0.835919 | 1.267639e-56 | -8.615850e-47 |
| Msa0720280 | Msa1168310 | 0.834339 | 3.173564e-56 | -8.615850e-47 |
| Msa0737020 | Msa1168310 | 0.832244 | 1.055878e-55 | -8.615850e-47 |
| Msa0778600 | Msa1168310 | 0.808862 | 2.513885e-50 | -8.615850e-47 |
| Msa0803140 | Msa1168310 | 0.838926 | 2.151009e-57 | -8.615850e-47 |
| Msa0816080 | Msa1168310 | 0.822052 | 2.911114e-53 | -8.615850e-47 |
| Msa0831820 | Msa1168310 | 0.802514 | 5.410349e-49 | -8.615850e-47 |
| Msa0837680 | Msa1168310 | 0.827920 | 1.198064e-54 | -8.615850e-47 |
| Msa0841500 | Msa1168310 | 0.827777 | 1.296850e-54 | -8.615850e-47 |
| Msa0125590 | Msa1168310 | 0.832620 | 8.521119e-56 | -8.615850e-47 |
| Msa0131810 | Msa1168310 | 0.801904 | 7.225758e-49 | -8.615850e-47 |
| Msa0156050 | Msa1168310 | 0.808546 | 2.937548e-50 | -8.615850e-47 |
| Msa0156090 | Msa1168310 | 0.810324 | 1.219548e-50 | -8.615850e-47 |
| Msa0168380 | Msa1168310 | 0.804861 | 1.762790e-49 | -8.615850e-47 |
| Msa0170070 | Msa1168310 | 0.810611 | 1.057690e-50 | -8.615850e-47 |
| Msa0195230 | Msa1168310 | 0.807418 | 5.103934e-50 | -8.615850e-47 |
| Msa0195260 | Msa1168310 | 0.811049 | 8.500867e-51 | -8.615850e-47 |
| Msa0204970 | Msa1168310 | 0.836116 | 1.129916e-56 | -8.615850e-47 |
| Msa0236820 | Msa1168310 | 0.811642 | 6.320451e-51 | -8.615850e-47 |
| Msa0373170 | Msa1168310 | 0.819843 | 9.387297e-53 | -8.615850e-47 |
| Msa0382230 | Msa1168310 | 0.804744 | 1.864727e-49 | -8.615850e-47 |
| Msa0388250 | Msa1168310 | 0.802041 | 6.772408e-49 | -8.615850e-47 |
| Msa0401060 | Msa1168310 | 0.802387 | 5.748126e-49 | -8.615850e-47 |
| Msa0416210 | Msa1168310 | 0.824020 | 1.011931e-53 | -8.615850e-47 |
| Msa0421750 | Msa1168310 | 0.806045 | 9.952523e-50 | -8.615850e-47 |
| Msa0433630 | Msa1168310 | 0.855608 | 5.628961e-62 | -8.615850e-47 |
| Msa0437480 | Msa1168310 | 0.817249 | 3.636465e-52 | -8.615850e-47 |
| Msa0440350 | Msa1168310 | 0.802796 | 4.731794e-49 | -8.615850e-47 |
| Msa0456670 | Msa1168310 | 0.812435 | 4.245107e-51 | -8.615850e-47 |
| Msa0458100 | Msa1168310 | 0.835211 | 1.914764e-56 | -8.615850e-47 |
| Msa0467690 | Msa1168310 | 0.818244 | 2.168278e-52 | -8.615850e-47 |
| Msa0468620 | Msa1168310 | 0.805892 | 1.071764e-49 | -8.615850e-47 |
| Msa0468700 | Msa1168310 | 0.823921 | 1.067420e-53 | -8.615850e-47 |
| Msa1000780 | Msa1168310 | 0.823241 | 1.539553e-53 | -8.615850e-47 |
| Msa1019200 | Msa1168310 | 0.800299 | 1.538230e-48 | -8.615850e-47 |
| Msa1021560 | Msa1168310 | 0.821736 | 3.445625e-53 | -8.615850e-47 |
| Msa1041060 | Msa1168310 | 0.812207 | 4.762725e-51 | -8.615850e-47 |
| Msa1076020 | Msa1168310 | 0.805549 | 1.265266e-49 | -8.615850e-47 |
| Msa1104110 | Msa1168310 | 0.801095 | 1.058480e-48 | -8.615850e-47 |
| Msa1105540 | Msa1168310 | 0.800938 | 1.139665e-48 | -8.615850e-47 |
| Msa1105580 | Msa1168310 | 0.813709 | 2.231454e-51 | -8.615850e-47 |
| Msa0249870 | Msa1168310 | 0.820149 | 7.990479e-53 | -8.615850e-47 |
| Msa0260980 | Msa1168310 | 0.801509 | 8.708460e-49 | -8.615850e-47 |
| Msa0279000 | Msa1168310 | 0.813609 | 2.347581e-51 | -8.615850e-47 |
| Msa0281540 | Msa1168310 | 0.812753 | 3.616930e-51 | -8.615850e-47 |
| Msa0320580 | Msa1168310 | 0.804485 | 2.111864e-49 | -8.615850e-47 |
| Msa0336430 | Msa1168310 | 0.800280 | 1.551910e-48 | -8.615850e-47 |
| Msa0336520 | Msa1168310 | 0.807746 | 4.348287e-50 | -8.615850e-47 |
| Msa0344110 | Msa1168310 | 0.804617 | 1.982274e-49 | -8.615850e-47 |
| Msa0354840 | Msa1168310 | 0.818403 | 1.996028e-52 | -8.615850e-47 |
| Msa1119440 | Msa1168310 | 0.816739 | 4.734754e-52 | -8.615850e-47 |
| Msa1147700 | Msa1168310 | 0.803766 | 2.980582e-49 | -8.615850e-47 |
| Msa1148930 | Msa1168310 | 0.834941 | 2.239639e-56 | -8.615850e-47 |
| Msa1158210 | Msa1168310 | 0.854362 | 1.295138e-61 | -8.615850e-47 |
| Msa1163180 | Msa1168310 | 0.812076 | 5.085993e-51 | -8.615850e-47 |
| Msa1168310 | Msa1188340 | 0.826657 | 2.405105e-54 | -8.615850e-47 |
| Msa1168310 | Msa1201170 | 0.823826 | 1.123887e-53 | -8.615850e-47 |
| Msa1168310 | Msa1206040 | 0.812952 | 3.271922e-51 | -8.615850e-47 |
| Msa1168310 | Msa1217890 | 0.801259 | 9.796953e-49 | -8.615850e-47 |
| Msa1168310 | Msa1226370 | 0.834148 | 3.542751e-56 | -8.615850e-47 |
| Msa1168310 | Msa1240940 | 0.816687 | 4.863858e-52 | -8.615850e-47 |
| Msa1168310 | Msa1294790 | 0.820209 | 7.739563e-53 | -8.615850e-47 |
| Msa1168310 | Msa1297070 | 0.817006 | 4.124708e-52 | -8.615850e-47 |
| Msa1168310 | Msa1301820 | 0.808071 | 3.707895e-50 | -8.615850e-47 |
| Msa1168310 | Msa1301830 | 0.803045 | 4.203448e-49 | -8.615850e-47 |
| Msa1168310 | Msa1305780 | 0.805286 | 1.436652e-49 | -8.615850e-47 |
| Msa1168310 | Msa1306570 | 0.801982 | 6.962089e-49 | -8.615850e-47 |
| Msa1168310 | Msa1328870 | 0.811258 | 7.659504e-51 | -8.615850e-47 |
| Msa1168310 | Msa1339230 | 0.804349 | 2.254059e-49 | -8.615850e-47 |
| Msa1168310 | Msa1363010 | 0.817331 | 3.486477e-52 | -8.615850e-47 |
| Msa1168310 | Msa1371800 | 0.808552 | 2.928008e-50 | -8.615850e-47 |
| Msa1168310 | Msa1372030 | 0.805780 | 1.131333e-49 | -8.615850e-47 |
| Msa1168310 | Msa1375350 | 0.800675 | 1.289343e-48 | -8.615850e-47 |
| Msa1168310 | Msa1376310 | 0.802735 | 4.872457e-49 | -8.615850e-47 |
| Msa1168310 | Msa1387500 | 0.822225 | 2.653866e-53 | -8.615850e-47 |
| Msa1168310 | Msa1393560 | 0.831532 | 1.582847e-55 | -8.615850e-47 |
| Msa1168310 | Msa1399190 | 0.814619 | 1.404836e-51 | -8.615850e-47 |
| Msa1168310 | Msa1426320 | 0.860280 | 2.306177e-63 | -8.615850e-47 |
| Msa1168310 | Msa1435100 | 0.802370 | 5.793193e-49 | -8.615850e-47 |
| Msa1168310 | Msa1439730 | 0.802538 | 5.349017e-49 | -8.615850e-47 |
| Msa1168310 | Msa1442260 | 0.803560 | 3.288096e-49 | -8.615850e-47 |
| Msa1168310 | Msa1460520 | 0.801039 | 1.086740e-48 | -8.615850e-47 |
| Msa0485980 | Msa1168310 | 0.810753 | 9.852297e-51 | -8.615850e-47 |
| Msa0513640 | Msa1168310 | 0.805863 | 1.087259e-49 | -8.615850e-47 |
| Msa0514020 | Msa1168310 | 0.820521 | 6.563836e-53 | -8.615850e-47 |
| Msa0514500 | Msa1168310 | 0.806970 | 6.350292e-50 | -8.615850e-47 |
| Msa0514580 | Msa1168310 | 0.814254 | 1.692279e-51 | -8.615850e-47 |
| Msa0521510 | Msa1168310 | 0.864361 | 1.285610e-64 | -8.615850e-47 |
| Msa0521530 | Msa1168310 | 0.832768 | 7.831025e-56 | -8.615850e-47 |
| Msa0527850 | Msa1168310 | 0.812538 | 4.032041e-51 | -8.615850e-47 |
| Msa0544410 | Msa1168310 | 0.800756 | 1.241114e-48 | -8.615850e-47 |
| Msa0554300 | Msa1168310 | 0.800717 | 1.264043e-48 | -8.615850e-47 |
| Msa0572830 | Msa1168310 | 0.840002 | 1.129968e-57 | -8.615850e-47 |
| Msa0582460 | Msa1168310 | 0.810316 | 1.224515e-50 | -8.615850e-47 |
| Msa0584530 | Msa1168310 | 0.817933 | 2.549744e-52 | -8.615850e-47 |
| Msa0586200 | Msa1168310 | 0.814453 | 1.528560e-51 | -8.615850e-47 |
| Msa0846900 | Msa1168310 | 0.843195 | 1.627200e-58 | -8.615850e-47 |
| Msa0861440 | Msa1168310 | 0.818214 | 2.202546e-52 | -8.615850e-47 |
| Msa0900090 | Msa1168310 | 0.815202 | 1.043276e-51 | -8.615850e-47 |
| Msa0900830 | Msa1168310 | 0.800255 | 1.570592e-48 | -8.615850e-47 |
| Msa0926310 | Msa1168310 | 0.818160 | 2.265416e-52 | -8.615850e-47 |
| Msa0930040 | Msa1168310 | 0.801274 | 9.726746e-49 | -8.615850e-47 |
| Msa0945900 | Msa1168310 | 0.984983 | 3.580752e-162 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168310 | MtrunA17_Chr7g0264651 | 99.744 | 390 | 1 | 0 | 1 | 390 | 1 | 390 | 0.0 | 806 |
| Msa1168310 | MtrunA17_Chr1g0180491 | 93.846 | 390 | 24 | 0 | 1 | 390 | 1 | 390 | 0.0 | 739 |
| Msa1168310 | MtrunA17_Chr2g0302931 | 90.415 | 386 | 37 | 0 | 2 | 387 | 4 | 389 | 0.0 | 702 |
| Msa1168310 | MtrunA17_Chr7g0270531 | 88.601 | 386 | 44 | 0 | 2 | 387 | 3 | 388 | 0.0 | 702 |
| Msa1168310 | MtrunA17_Chr4g0069201 | 89.896 | 386 | 39 | 0 | 2 | 387 | 4 | 389 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168310 | AT2G36880.2 | 92.821 | 390 | 28 | 0 | 1 | 390 | 1 | 390 | 0.0 | 729 |
| Msa1168310 | AT2G36880.1 | 92.821 | 390 | 28 | 0 | 1 | 390 | 1 | 390 | 0.0 | 729 |
| Msa1168310 | AT3G17390.1 | 90.439 | 387 | 37 | 0 | 1 | 387 | 1 | 387 | 0.0 | 706 |
| Msa1168310 | AT1G02500.1 | 89.664 | 387 | 40 | 0 | 1 | 387 | 1 | 387 | 0.0 | 698 |
| Msa1168310 | AT1G02500.2 | 89.664 | 387 | 40 | 0 | 1 | 387 | 1 | 387 | 0.0 | 698 |
| Msa1168310 | AT4G01850.2 | 88.630 | 387 | 44 | 0 | 1 | 387 | 1 | 387 | 0.0 | 698 |
| Msa1168310 | AT4G01850.1 | 88.630 | 387 | 44 | 0 | 1 | 387 | 1 | 387 | 0.0 | 698 |
Find 144 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAGCCATCTTTCAGATTT+TGG | 0.107560 | 7_4:-60892595 | Msa1168310:three_prime_UTR |
| ACTGCTGCTTACGGCCATTT+TGG | 0.183319 | 7_4:-60892719 | Msa1168310:CDS |
| CCATCTGGTCGGTTTGTTAT+TGG | 0.197743 | 7_4:-60893112 | Msa1168310:CDS |
| AATTCCAGACAAGGACATTT+TGG | 0.207394 | 7_4:-60892831 | Msa1168310:CDS |
| TCACATGCAACTTTACTTTC+TGG | 0.213203 | 7_4:+60893706 | None:intergenic |
| TGCAACCAAACTTGTGTTAT+TGG | 0.238406 | 7_4:-60892343 | Msa1168310:three_prime_UTR |
| CACATGCAACTTTACTTTCT+GGG | 0.255105 | 7_4:+60893707 | None:intergenic |
| GTTGGGCACGTTAGCTCAAT+AGG | 0.290555 | 7_4:-60892470 | Msa1168310:three_prime_UTR |
| TATATATAGATAAACGTATA+TGG | 0.290661 | 7_4:+60894969 | None:intergenic |
| CGAGACACTTGCAGAGGAAT+TGG | 0.296576 | 7_4:-60893604 | Msa1168310:CDS |
| AAATTTCATTATTAAGTAAT+GGG | 0.321971 | 7_4:-60892397 | Msa1168310:three_prime_UTR |
| ACCTGATCACACAGCTTGTC+GGG | 0.335375 | 7_4:+60893766 | None:intergenic |
| CCCTGAAGCTACCACACTTT+TGG | 0.336878 | 7_4:+60892943 | None:intergenic |
| GGCCGTAAGCAGCAGTCTTT+TGG | 0.341263 | 7_4:+60892726 | None:intergenic |
| TTTGGGTGAAATGAAAATAA+AGG | 0.342468 | 7_4:-60892577 | Msa1168310:three_prime_UTR |
| CCATGGCTCCGTTATCATTC+TGG | 0.342771 | 7_4:+60893284 | None:intergenic |
| GCCAAAAGTGTGGTAGCTTC+AGG | 0.346842 | 7_4:-60892944 | Msa1168310:CDS |
| AGATTATTGGAAATCATTCC+TGG | 0.346876 | 7_4:+60892779 | None:intergenic |
| CAGGATCATCACGTCCAAAA+TGG | 0.354406 | 7_4:+60892705 | None:intergenic |
| ACTGACATGGTTATGGTCTT+TGG | 0.360494 | 7_4:-60893670 | Msa1168310:CDS |
| TCAAAAGAGGTGGCAACTTC+AGG | 0.361522 | 7_4:-60892751 | Msa1168310:CDS |
| TTTCATAAATTAACTCCAAT+GGG | 0.365018 | 7_4:+60892282 | None:intergenic |
| AGCTTGCTAACTCAAGCCTT+TGG | 0.368398 | 7_4:+60892650 | None:intergenic |
| TTACACCAATAACACAAGTT+TGG | 0.369185 | 7_4:+60892338 | None:intergenic |
| CATGGAGGAGGTGCCTTCTC+TGG | 0.371602 | 7_4:-60893019 | Msa1168310:CDS |
| TCTTGTTGAAGATACACTTC+GGG | 0.374573 | 7_4:-60892532 | Msa1168310:three_prime_UTR |
| GTGCAAGTTTCTTATGCAAT+TGG | 0.380643 | 7_4:-60892902 | Msa1168310:CDS |
| CCACTTCTATCGACCTTGGT+TGG | 0.382632 | 7_4:+60892989 | None:intergenic |
| CTCATAGTTCACAGTAGCCT+TGG | 0.390492 | 7_4:+60893636 | None:intergenic |
| TGAAGATACACTTCGGGGAT+TGG | 0.392450 | 7_4:-60892526 | Msa1168310:three_prime_UTR |
| TTTGGTTGCAAAACTATCAA+TGG | 0.399372 | 7_4:+60892356 | None:intergenic |
| CTCACTCCAACCACCACGTT+TGG | 0.402534 | 7_4:-60894858 | Msa1168310:intron |
| GGCTGGGGTGCACATGGAGG+AGG | 0.404143 | 7_4:-60893031 | Msa1168310:CDS |
| CACTTCTATCGACCTTGGTT+GGG | 0.408524 | 7_4:+60892990 | None:intergenic |
| AGAGATGATGATGTCTTAGT+TGG | 0.412391 | 7_4:-60892488 | Msa1168310:three_prime_UTR |
| TTTGTTGACACATACAAAAC+AGG | 0.415934 | 7_4:-60892857 | Msa1168310:CDS |
| TAAATTTCATTATTAAGTAA+TGG | 0.415948 | 7_4:-60892398 | Msa1168310:three_prime_UTR |
| AGAACCAAAATGTCCTTGTC+TGG | 0.421273 | 7_4:+60892827 | None:intergenic |
| TATGGTGGCTGGGGTGCACA+TGG | 0.422018 | 7_4:-60893037 | Msa1168310:CDS |
| ACAGTCTCCCAGGTGAAATC+AGG | 0.423808 | 7_4:+60892686 | None:intergenic |
| TTGGGCACGTTAGCTCAATA+GGG | 0.426301 | 7_4:-60892469 | Msa1168310:three_prime_UTR |
| GATATTGCTCAAGGAGTTCA+TGG | 0.429376 | 7_4:-60893508 | Msa1168310:CDS |
| TGAACTCCTTGAGCAATATC+AGG | 0.430783 | 7_4:+60893511 | None:intergenic |
| TAACAGAAAATGTGAGAAAG+AGG | 0.431513 | 7_4:+60894920 | None:intergenic |
| CCCCGACAAGCTGTGTGATC+AGG | 0.440463 | 7_4:-60893767 | Msa1168310:CDS |
| ACAAAACATGCGCATGGCTT+AGG | 0.449886 | 7_4:-60893339 | Msa1168310:CDS |
| TACAAAGACTGACATGGTTA+TGG | 0.452155 | 7_4:-60893677 | Msa1168310:CDS |
| TCTGGTCGGTTTGTTATTGG+TGG | 0.458272 | 7_4:-60893109 | Msa1168310:CDS |
| GAAGTGGGGCATATATTGTT+AGG | 0.460316 | 7_4:-60892973 | Msa1168310:CDS |
| GAGTATCTTGACAGTCTCCC+AGG | 0.461385 | 7_4:+60892676 | None:intergenic |
| ACAAATACAGAAAGTGGCTC+TGG | 0.466173 | 7_4:+60892875 | None:intergenic |
| TTTGTTATTGGTGGACCTCA+TGG | 0.466434 | 7_4:-60893100 | Msa1168310:CDS |
| AGGACAGTGTGCACACGGAT+TGG | 0.468164 | 7_4:+60893259 | None:intergenic |
| TCACCAGCACCAATTTCCTC+TGG | 0.468785 | 7_4:+60893469 | None:intergenic |
| AACCTGATCACACAGCTTGT+CGG | 0.469901 | 7_4:+60893765 | None:intergenic |
| ATATATAGATAAACGTATAT+GGG | 0.470628 | 7_4:+60894970 | None:intergenic |
| ATCTTCCATCTCAATCCATC+TGG | 0.470979 | 7_4:-60893127 | Msa1168310:CDS |
| TGATATTATTATTTCCCCAT+TGG | 0.473010 | 7_4:-60892297 | Msa1168310:three_prime_UTR |
| GGACAGTGTGCACACGGATT+GGG | 0.473091 | 7_4:+60893260 | None:intergenic |
| AGAAAATGTGAGAAAGAGGA+AGG | 0.474488 | 7_4:+60894924 | None:intergenic |
| ATTTCATAAATTAACTCCAA+TGG | 0.475723 | 7_4:+60892281 | None:intergenic |
| TCTGGTACTCAACAGTAACT+TGG | 0.475924 | 7_4:+60893302 | None:intergenic |
| CCAAAAGTGTGGTAGCTTCA+GGG | 0.478895 | 7_4:-60892943 | Msa1168310:CDS |
| TACACTTCGGGGATTGGATG+TGG | 0.480085 | 7_4:-60892520 | Msa1168310:three_prime_UTR |
| TTATTGACACCTATGGTGGC+TGG | 0.480591 | 7_4:-60893048 | Msa1168310:CDS |
| CTTCAACAAGAGATGCATAT+AGG | 0.481993 | 7_4:+60892544 | None:intergenic |
| GGTGACCAAGGTCACATGTT+TGG | 0.484772 | 7_4:-60893451 | Msa1168310:CDS |
| ATAATGAAATTTAAAAGAAG+TGG | 0.489758 | 7_4:+60892408 | None:intergenic |
| GGTTGGGTCCTTGCCAGAGA+AGG | 0.492679 | 7_4:+60893006 | None:intergenic |
| TATTGACACCTATGGTGGCT+GGG | 0.497719 | 7_4:-60893047 | Msa1168310:CDS |
| AAAGAGGAAGGGAAATAGAA+AGG | 0.500304 | 7_4:+60894936 | None:intergenic |
| TTCACCCAAAATCTGAAAGA+TGG | 0.508470 | 7_4:+60892590 | None:intergenic |
| GTGTCAACAAATACAGAAAG+TGG | 0.512228 | 7_4:+60892869 | None:intergenic |
| TGAGTAAGTGGCATTAGCTC+AGG | 0.517740 | 7_4:+60893409 | None:intergenic |
| TACCAAAAGACTGCTGCTTA+CGG | 0.520119 | 7_4:-60892728 | Msa1168310:CDS |
| GGAAGATAGTCTTGTCATCA+AGG | 0.520901 | 7_4:+60893143 | None:intergenic |
| GGTGGACCTCATGGAGATGC+AGG | 0.523297 | 7_4:-60893091 | Msa1168310:CDS |
| AAGATCATTATTGACACCTA+TGG | 0.523504 | 7_4:-60893055 | Msa1168310:CDS |
| AAAACTATCAATGGACTGAC+AGG | 0.524374 | 7_4:+60892365 | None:intergenic |
| CTCTTGTTGAAGATACACTT+CGG | 0.525996 | 7_4:-60892533 | Msa1168310:three_prime_UTR |
| CATGGAGATGCAGGACTCAC+TGG | 0.526918 | 7_4:-60893082 | Msa1168310:CDS |
| GTAACTTGGGTCTTACCATC+AGG | 0.530097 | 7_4:+60893316 | None:intergenic |
| AATAATCTTGACCTCAAAAG+AGG | 0.536379 | 7_4:-60892764 | Msa1168310:CDS |
| GAAGGGAAATAGAAAGGTAG+CGG | 0.541569 | 7_4:+60894942 | None:intergenic |
| GTAGCAAGCACATGAGTAAG+TGG | 0.543954 | 7_4:+60893397 | None:intergenic |
| TACGTACCAAACGTGGTGGT+TGG | 0.543987 | 7_4:+60894852 | None:intergenic |
| AAAGCAAATAACTGAAGAGC+GGG | 0.545756 | 7_4:-60895021 | Msa1168310:five_prime_UTR |
| TGCCCCACTTCTATCGACCT+TGG | 0.546010 | 7_4:+60892985 | None:intergenic |
| GAGATGATGATGTCTTAGTT+GGG | 0.550905 | 7_4:-60892487 | Msa1168310:three_prime_UTR |
| AAACCAGAGGAAATTGGTGC+TGG | 0.551112 | 7_4:-60893472 | Msa1168310:CDS |
| CATGTGCTTGCTACTAAACT+CGG | 0.555316 | 7_4:-60893388 | Msa1168310:CDS |
| TGCGCATGGCTTAGGCCTGA+TGG | 0.560731 | 7_4:-60893331 | Msa1168310:CDS |
| TAGCTCAGGTGTTTCATCTG+TGG | 0.560925 | 7_4:+60893423 | None:intergenic |
| GTGATGATCCTGATTTCACC+TGG | 0.563332 | 7_4:-60892694 | Msa1168310:CDS |
| GGTGGCTGGGGTGCACATGG+AGG | 0.563354 | 7_4:-60893034 | Msa1168310:CDS |
| ATGTGCACCCCAGCCACCAT+AGG | 0.566173 | 7_4:+60893039 | None:intergenic |
| GAAATTGGTGCTGGTGACCA+AGG | 0.570337 | 7_4:-60893463 | Msa1168310:CDS |
| GAAAATGTGAGAAAGAGGAA+GGG | 0.574942 | 7_4:+60894925 | None:intergenic |
| GTTGAGTACCAGAATGATAA+CGG | 0.575092 | 7_4:-60893292 | Msa1168310:CDS |
| AGATTCTGAGGTGAAGAGGA+AGG | 0.575374 | 7_4:+60893804 | None:intergenic |
| CAAATACAGAAAGTGGCTCT+GGG | 0.576109 | 7_4:+60892876 | None:intergenic |
| TCCATCTCAATCCATCTGGT+CGG | 0.577302 | 7_4:-60893123 | Msa1168310:CDS |
| CTGCAAACATGCATCAAGGA+TGG | 0.580545 | 7_4:+60893735 | None:intergenic |
| GTGCACACGGATTGGGACCA+TGG | 0.581365 | 7_4:+60893267 | None:intergenic |
| CTGGTACTCAACAGTAACTT+GGG | 0.582179 | 7_4:+60893303 | None:intergenic |
| CATAGCCAAACATGTGACCT+TGG | 0.582504 | 7_4:+60893446 | None:intergenic |
| TTACAGATTCTGAGGTGAAG+AGG | 0.583165 | 7_4:+60893800 | None:intergenic |
| CAAAGTCCTGATATTGCTCA+AGG | 0.584881 | 7_4:-60893517 | Msa1168310:CDS |
| ATTGACACCTATGGTGGCTG+GGG | 0.585915 | 7_4:-60893046 | Msa1168310:CDS |
| ACCTTCGTTTACAGATTCTG+AGG | 0.589403 | 7_4:+60893792 | None:intergenic |
| CAACCAAGGTCGATAGAAGT+GGG | 0.589471 | 7_4:-60892988 | Msa1168310:CDS |
| ACGTGGTGGTTGGAGTGAGA+AGG | 0.593430 | 7_4:+60894862 | None:intergenic |
| AGGAGGTGCCTTCTCTGGCA+AGG | 0.599631 | 7_4:-60893014 | Msa1168310:CDS |
| TTCGGGGATTGGATGTGGAA+AGG | 0.600351 | 7_4:-60892515 | Msa1168310:three_prime_UTR |
| CCAACCAAGGTCGATAGAAG+TGG | 0.601493 | 7_4:-60892989 | Msa1168310:CDS |
| ATCATTATTGACACCTATGG+TGG | 0.611359 | 7_4:-60893052 | Msa1168310:CDS |
| CTTGCTGCAAACATGCATCA+AGG | 0.611540 | 7_4:+60893731 | None:intergenic |
| CCAATAACAAACCGACCAGA+TGG | 0.611757 | 7_4:+60893112 | None:intergenic |
| AGATGAGGACAGTGTGCACA+CGG | 0.613951 | 7_4:+60893254 | None:intergenic |
| CATCGTGCTGAGTTGAGATG+AGG | 0.617276 | 7_4:+60893239 | None:intergenic |
| ACCGACCAGATGGATTGAGA+TGG | 0.617816 | 7_4:+60893122 | None:intergenic |
| CCAGAATGATAACGGAGCCA+TGG | 0.619445 | 7_4:-60893284 | Msa1168310:CDS |
| GGATTCGTATCAGCTGATGT+TGG | 0.619951 | 7_4:-60893583 | Msa1168310:CDS |
| GAAAGAACAAAACATGCGCA+TGG | 0.625968 | 7_4:-60893345 | Msa1168310:CDS |
| AAGGGAAATAGAAAGGTAGC+GGG | 0.626362 | 7_4:+60894943 | None:intergenic |
| CTTGTTGAAGATACACTTCG+GGG | 0.632474 | 7_4:-60892531 | Msa1168310:three_prime_UTR |
| AATCTTGACCTCAAAAGAGG+TGG | 0.633225 | 7_4:-60892761 | Msa1168310:CDS |
| CTCTGGCAAGGACCCAACCA+AGG | 0.634793 | 7_4:-60893002 | Msa1168310:CDS |
| GAGATGCAGGACTCACTGGT+AGG | 0.648576 | 7_4:-60893078 | Msa1168310:CDS |
| ACCTCAGAATCTGTAAACGA+AGG | 0.649053 | 7_4:-60893793 | Msa1168310:CDS |
| TGGGCACGTTAGCTCAATAG+GGG | 0.656176 | 7_4:-60892468 | Msa1168310:three_prime_UTR |
| GAAAGCAAATAACTGAAGAG+CGG | 0.656250 | 7_4:-60895022 | Msa1168310:five_prime_UTR |
| TTCATAAATTAACTCCAATG+GGG | 0.666291 | 7_4:+60892283 | None:intergenic |
| CCTGATCACACAGCTTGTCG+GGG | 0.668924 | 7_4:+60893767 | None:intergenic |
| TGATGATCCTGATTTCACCT+GGG | 0.678075 | 7_4:-60892693 | Msa1168310:CDS |
| TGTCAAGATACTCAAGCCAA+AGG | 0.679722 | 7_4:-60892666 | Msa1168310:CDS |
| GGAGAGTTACGTACCAAACG+TGG | 0.684805 | 7_4:+60894845 | None:intergenic |
| ATAGTTCGAGACACTTGCAG+AGG | 0.698300 | 7_4:-60893610 | Msa1168310:CDS |
| AACCAAGGTCGATAGAAGTG+GGG | 0.698373 | 7_4:-60892987 | Msa1168310:CDS |
| CTTTGGTGAGATAACAACCA+AGG | 0.702167 | 7_4:-60893653 | Msa1168310:CDS |
| TAGGCAAGCAGCCAAAAGTG+TGG | 0.702229 | 7_4:-60892954 | Msa1168310:CDS |
| GTGAGTCCTGCATCTCCATG+AGG | 0.711004 | 7_4:+60893085 | None:intergenic |
| GAGTTACGTACCAAACGTGG+TGG | 0.728565 | 7_4:+60894848 | None:intergenic |
| GACATGTACAAAGACTGACA+TGG | 0.773101 | 7_4:-60893683 | Msa1168310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAAAAAAAACA+TGG | + | chr7_4:60892550-60892569 | None:intergenic | 10.0% |
| !!! | ATTATGATTTTAGATTTATT+TGG | - | chr7_4:60892842-60892861 | Msa1168310:CDS | 10.0% |
| !! | TAAATTTCATTATTAAGTAA+TGG | - | chr7_4:60894920-60894939 | Msa1168310:five_prime_UTR | 10.0% |
| !! | AAATTTCATTATTAAGTAAT+GGG | - | chr7_4:60894921-60894940 | Msa1168310:five_prime_UTR | 10.0% |
| !! | ATATATAGATAAACGTATAT+GGG | + | chr7_4:60892351-60892370 | None:intergenic | 15.0% |
| !! | TATATATAGATAAACGTATA+TGG | + | chr7_4:60892352-60892371 | None:intergenic | 15.0% |
| !!! | AAATATGCAAAAACTATTTT+TGG | + | chr7_4:60892876-60892895 | None:intergenic | 15.0% |
| !! | ATAATGAAATTTAAAAGAAG+TGG | + | chr7_4:60894913-60894932 | None:intergenic | 15.0% |
| !!! | TGATTCTTTTTTGTATTGTT+CGG | - | chr7_4:60892762-60892781 | Msa1168310:CDS | 20.0% |
| !! | GTTTCAATTATCATTCATAT+TGG | + | chr7_4:60892964-60892983 | None:intergenic | 20.0% |
| !! | ATGAATGATAATTGAAACAT+TGG | - | chr7_4:60892966-60892985 | Msa1168310:CDS | 20.0% |
| !! | GTTATAATGATAAGGAAAAA+AGG | + | chr7_4:60893205-60893224 | None:intergenic | 20.0% |
| !!! | TTTTTTTATGTACTTTTGAG+AGG | - | chr7_4:60893278-60893297 | Msa1168310:CDS | 20.0% |
| !! | GGTAAAATAAAAAACAAACA+AGG | + | chr7_4:60894892-60894911 | None:intergenic | 20.0% |
| ! | ATAACTAGAAATGGTAAAAG+AGG | + | chr7_4:60892497-60892516 | None:intergenic | 25.0% |
| ! | AAACATGGCATTATAGATTT+GGG | + | chr7_4:60892535-60892554 | None:intergenic | 25.0% |
| ! | AAAACATGGCATTATAGATT+TGG | + | chr7_4:60892536-60892555 | None:intergenic | 25.0% |
| ! | TTCATAAAGTAGATAACATG+AGG | + | chr7_4:60892593-60892612 | None:intergenic | 25.0% |
| !! | TATTTGATAACTGAACGTTA+AGG | - | chr7_4:60892891-60892910 | Msa1168310:CDS | 25.0% |
| ! | ACGCAAAAGTTATAATGATA+AGG | + | chr7_4:60893213-60893232 | None:intergenic | 25.0% |
| !!! | TCCTTTCTAAAGTATTGATA+CGG | - | chr7_4:60893309-60893328 | Msa1168310:CDS | 25.0% |
| ! | TAATATGAAGCTAACAATCT+TGG | + | chr7_4:60893423-60893442 | None:intergenic | 25.0% |
| ! | ATAAGAAGGAAGGAAAAAAA+AGG | + | chr7_4:60893478-60893497 | None:intergenic | 25.0% |
| ! | TTTGGGTGAAATGAAAATAA+AGG | - | chr7_4:60894741-60894760 | Msa1168310:intron | 25.0% |
| ! | TGATATTATTATTTCCCCAT+TGG | - | chr7_4:60895021-60895040 | Msa1168310:five_prime_UTR | 25.0% |
| TAACAGAAAATGTGAGAAAG+AGG | + | chr7_4:60892401-60892420 | None:intergenic | 30.0% | |
| GATCTGATGATAACTAGAAA+TGG | + | chr7_4:60892506-60892525 | None:intergenic | 30.0% | |
| ! | TTCTAGTTATCATCAGATCT+TGG | - | chr7_4:60892507-60892526 | Msa1168310:three_prime_UTR | 30.0% |
| AATAATGCTTCTGTGACTAT+TGG | + | chr7_4:60892927-60892946 | None:intergenic | 30.0% | |
| ! | AGCATTATTTTCTTCCAGAT+TGG | - | chr7_4:60892938-60892957 | Msa1168310:CDS | 30.0% |
| TAATTGAAACATTGGCAATG+TGG | - | chr7_4:60892974-60892993 | Msa1168310:CDS | 30.0% | |
| ! | TAGAAGTAGCTTTTGCTTAT+AGG | - | chr7_4:60893022-60893041 | Msa1168310:CDS | 30.0% |
| ! | GTCAATTGTCAAACTCTTTT+TGG | - | chr7_4:60893111-60893130 | Msa1168310:CDS | 30.0% |
| ! | TTTTTCCTTGAATGTAGATC+TGG | + | chr7_4:60893140-60893159 | None:intergenic | 30.0% |
| TAAGGAGTGACATTGTTATA+CGG | + | chr7_4:60893164-60893183 | None:intergenic | 30.0% | |
| !! | TGTATGTGAAGTTGATGATA+AGG | + | chr7_4:60893182-60893201 | None:intergenic | 30.0% |
| ! | CAATACTTTAGAAAGGAGTT+TGG | + | chr7_4:60893306-60893325 | None:intergenic | 30.0% |
| !! | CCTTTCTAAAGTATTGATAC+GGG | - | chr7_4:60893310-60893329 | Msa1168310:CDS | 30.0% |
| ! | TCTCTGTTTTATAAGAAGGA+AGG | + | chr7_4:60893488-60893507 | None:intergenic | 30.0% |
| TCCTTCTTATAAAACAGAGA+TGG | - | chr7_4:60893488-60893507 | Msa1168310:CDS | 30.0% | |
| ! | TCCATCTCTGTTTTATAAGA+AGG | + | chr7_4:60893492-60893511 | None:intergenic | 30.0% |
| AAGATCATTATTGACACCTA+TGG | - | chr7_4:60894263-60894282 | Msa1168310:intron | 30.0% | |
| TTTGTTGACACATACAAAAC+AGG | - | chr7_4:60894461-60894480 | Msa1168310:intron | 30.0% | |
| !!! | TTAAAGAGCATTTTGACTTC+AGG | - | chr7_4:60894516-60894535 | Msa1168310:intron | 30.0% |
| AGATTATTGGAAATCATTCC+TGG | + | chr7_4:60894542-60894561 | None:intergenic | 30.0% | |
| !!! | TCTTTTGAGGTCAAGATTAT+TGG | + | chr7_4:60894555-60894574 | None:intergenic | 30.0% |
| AATAATCTTGACCTCAAAAG+AGG | - | chr7_4:60894554-60894573 | Msa1168310:intron | 30.0% | |
| TTTGGTTGCAAAACTATCAA+TGG | + | chr7_4:60894965-60894984 | None:intergenic | 30.0% | |
| TTACACCAATAACACAAGTT+TGG | + | chr7_4:60894983-60895002 | None:intergenic | 30.0% | |
| GAAAGCAAATAACTGAAGAG+CGG | - | chr7_4:60892296-60892315 | Msa1168310:three_prime_UTR | 35.0% | |
| AAAGCAAATAACTGAAGAGC+GGG | - | chr7_4:60892297-60892316 | Msa1168310:three_prime_UTR | 35.0% | |
| AAAGAGGAAGGGAAATAGAA+AGG | + | chr7_4:60892385-60892404 | None:intergenic | 35.0% | |
| GAAAATGTGAGAAAGAGGAA+GGG | + | chr7_4:60892396-60892415 | None:intergenic | 35.0% | |
| AGAAAATGTGAGAAAGAGGA+AGG | + | chr7_4:60892397-60892416 | None:intergenic | 35.0% | |
| ATCATTCATATTGGCCAATC+TGG | + | chr7_4:60892955-60892974 | None:intergenic | 35.0% | |
| ! | AAAGCTACTTCTAGTTGCTT+TGG | + | chr7_4:60893015-60893034 | None:intergenic | 35.0% |
| ! | CCCGTATCAATACTTTAGAA+AGG | + | chr7_4:60893313-60893332 | None:intergenic | 35.0% |
| AGGCTTGAGAAAAAAATGCA+TGG | + | chr7_4:60893458-60893477 | None:intergenic | 35.0% | |
| CACATGCAACTTTACTTTCT+GGG | + | chr7_4:60893614-60893633 | None:intergenic | 35.0% | |
| TCACATGCAACTTTACTTTC+TGG | + | chr7_4:60893615-60893634 | None:intergenic | 35.0% | |
| TACAAAGACTGACATGGTTA+TGG | - | chr7_4:60893641-60893660 | Msa1168310:CDS | 35.0% | |
| ACCAAAAAACCAGAGGAAAT+TGG | - | chr7_4:60893840-60893859 | Msa1168310:intron | 35.0% | |
| !!! | ACCAATTTCCTCTGGTTTTT+TGG | + | chr7_4:60893844-60893863 | None:intergenic | 35.0% |
| GTTGAGTACCAGAATGATAA+CGG | - | chr7_4:60894026-60894045 | Msa1168310:intron | 35.0% | |
| !! | TGTCATCAAGGTATTTTGCT+GGG | + | chr7_4:60894166-60894185 | None:intergenic | 35.0% |
| !! | TTGTCATCAAGGTATTTTGC+TGG | + | chr7_4:60894167-60894186 | None:intergenic | 35.0% |
| ATCATTATTGACACCTATGG+TGG | - | chr7_4:60894266-60894285 | Msa1168310:intron | 35.0% | |
| GTGCAAGTTTCTTATGCAAT+TGG | - | chr7_4:60894416-60894435 | Msa1168310:intron | 35.0% | |
| GTGTCAACAAATACAGAAAG+TGG | + | chr7_4:60894452-60894471 | None:intergenic | 35.0% | |
| AACAGGAAAAATTCCAGACA+AGG | - | chr7_4:60894478-60894497 | Msa1168310:intron | 35.0% | |
| ! | AATTCCAGACAAGGACATTT+TGG | - | chr7_4:60894487-60894506 | Msa1168310:intron | 35.0% |
| !! | AGCTACCATGACATTTTTAG+TGG | - | chr7_4:60894687-60894706 | Msa1168310:intron | 35.0% |
| !!! | TACCATGACATTTTTAGTGG+TGG | - | chr7_4:60894690-60894709 | Msa1168310:intron | 35.0% |
| ! | GTAGCCATCTTTCAGATTTT+GGG | - | chr7_4:60894724-60894743 | Msa1168310:intron | 35.0% |
| TTCACCCAAAATCTGAAAGA+TGG | + | chr7_4:60894731-60894750 | None:intergenic | 35.0% | |
| CTTCAACAAGAGATGCATAT+AGG | + | chr7_4:60894777-60894796 | None:intergenic | 35.0% | |
| CTCTTGTTGAAGATACACTT+CGG | - | chr7_4:60894785-60894804 | Msa1168310:intron | 35.0% | |
| TCTTGTTGAAGATACACTTC+GGG | - | chr7_4:60894786-60894805 | Msa1168310:intron | 35.0% | |
| ! | AGAGATGATGATGTCTTAGT+TGG | - | chr7_4:60894830-60894849 | Msa1168310:intron | 35.0% |
| ! | GAGATGATGATGTCTTAGTT+GGG | - | chr7_4:60894831-60894850 | Msa1168310:intron | 35.0% |
| !! | AAAACTATCAATGGACTGAC+AGG | + | chr7_4:60894956-60894975 | None:intergenic | 35.0% |
| TGCAACCAAACTTGTGTTAT+TGG | - | chr7_4:60894975-60894994 | Msa1168310:five_prime_UTR | 35.0% | |
| AAGGGAAATAGAAAGGTAGC+GGG | + | chr7_4:60892378-60892397 | None:intergenic | 40.0% | |
| GAAGGGAAATAGAAAGGTAG+CGG | + | chr7_4:60892379-60892398 | None:intergenic | 40.0% | |
| GATAACTGAACGTTAAGGTG+TGG | - | chr7_4:60892896-60892915 | Msa1168310:CDS | 40.0% | |
| CCACAGCTGAATGTTTATGA+TGG | + | chr7_4:60893087-60893106 | None:intergenic | 40.0% | |
| CCATCATAAACATTCAGCTG+TGG | - | chr7_4:60893084-60893103 | Msa1168310:CDS | 40.0% | |
| GGTTTCCAGATCTACATTCA+AGG | - | chr7_4:60893132-60893151 | Msa1168310:CDS | 40.0% | |
| !! | TTACAGATTCTGAGGTGAAG+AGG | + | chr7_4:60893521-60893540 | None:intergenic | 40.0% |
| ACCTCAGAATCTGTAAACGA+AGG | - | chr7_4:60893525-60893544 | Msa1168310:CDS | 40.0% | |
| ACCTTCGTTTACAGATTCTG+AGG | + | chr7_4:60893529-60893548 | None:intergenic | 40.0% | |
| GACATGTACAAAGACTGACA+TGG | - | chr7_4:60893635-60893654 | Msa1168310:CDS | 40.0% | |
| ACTGACATGGTTATGGTCTT+TGG | - | chr7_4:60893648-60893667 | Msa1168310:CDS | 40.0% | |
| CTTTGGTGAGATAACAACCA+AGG | - | chr7_4:60893665-60893684 | Msa1168310:CDS | 40.0% | |
| CAAAGTCCTGATATTGCTCA+AGG | - | chr7_4:60893801-60893820 | Msa1168310:CDS | 40.0% | |
| TGAACTCCTTGAGCAATATC+AGG | + | chr7_4:60893810-60893829 | None:intergenic | 40.0% | |
| GATATTGCTCAAGGAGTTCA+TGG | - | chr7_4:60893810-60893829 | Msa1168310:CDS | 40.0% | |
| TCACTTGACCAAAAAACCAG+AGG | - | chr7_4:60893833-60893852 | Msa1168310:intron | 40.0% | |
| ! | CATGTGCTTGCTACTAAACT+CGG | - | chr7_4:60893930-60893949 | Msa1168310:intron | 40.0% |
| GAAAGAACAAAACATGCGCA+TGG | - | chr7_4:60893973-60893992 | Msa1168310:intron | 40.0% | |
| CTGGTACTCAACAGTAACTT+GGG | + | chr7_4:60894018-60894037 | None:intergenic | 40.0% | |
| TCTGGTACTCAACAGTAACT+TGG | + | chr7_4:60894019-60894038 | None:intergenic | 40.0% | |
| ! | AGGTATTTTGCTGGGATAAC+AGG | + | chr7_4:60894158-60894177 | None:intergenic | 40.0% |
| !! | GGAAGATAGTCTTGTCATCA+AGG | + | chr7_4:60894178-60894197 | None:intergenic | 40.0% |
| ATCTTCCATCTCAATCCATC+TGG | - | chr7_4:60894191-60894210 | Msa1168310:intron | 40.0% | |
| !! | TTTGTTATTGGTGGACCTCA+TGG | - | chr7_4:60894218-60894237 | Msa1168310:intron | 40.0% |
| GAAGTGGGGCATATATTGTT+AGG | - | chr7_4:60894345-60894364 | Msa1168310:intron | 40.0% | |
| CAAATACAGAAAGTGGCTCT+GGG | + | chr7_4:60894445-60894464 | None:intergenic | 40.0% | |
| ACAAATACAGAAAGTGGCTC+TGG | + | chr7_4:60894446-60894465 | None:intergenic | 40.0% | |
| AGAACCAAAATGTCCTTGTC+TGG | + | chr7_4:60894494-60894513 | None:intergenic | 40.0% | |
| AATCTTGACCTCAAAAGAGG+TGG | - | chr7_4:60894557-60894576 | Msa1168310:intron | 40.0% | |
| ! | TACCAAAAGACTGCTGCTTA+CGG | - | chr7_4:60894590-60894609 | Msa1168310:intron | 40.0% |
| TGATGATCCTGATTTCACCT+GGG | - | chr7_4:60894625-60894644 | Msa1168310:intron | 40.0% | |
| TGTCAAGATACTCAAGCCAA+AGG | - | chr7_4:60894652-60894671 | Msa1168310:intron | 40.0% | |
| CACCACCACTAAAAATGTCA+TGG | + | chr7_4:60894695-60894714 | None:intergenic | 40.0% | |
| !!! | CATGACATTTTTAGTGGTGG+TGG | - | chr7_4:60894693-60894712 | Msa1168310:intron | 40.0% |
| ! | CGTAGCCATCTTTCAGATTT+TGG | - | chr7_4:60894723-60894742 | Msa1168310:intron | 40.0% |
| CTTGTTGAAGATACACTTCG+GGG | - | chr7_4:60894787-60894806 | Msa1168310:intron | 40.0% | |
| !! | AGATTCTGAGGTGAAGAGGA+AGG | + | chr7_4:60893517-60893536 | None:intergenic | 45.0% |
| AACCTGATCACACAGCTTGT+CGG | + | chr7_4:60893556-60893575 | None:intergenic | 45.0% | |
| CTGCAAACATGCATCAAGGA+TGG | + | chr7_4:60893586-60893605 | None:intergenic | 45.0% | |
| CTTGCTGCAAACATGCATCA+AGG | + | chr7_4:60893590-60893609 | None:intergenic | 45.0% | |
| CTCATAGTTCACAGTAGCCT+TGG | + | chr7_4:60893685-60893704 | None:intergenic | 45.0% | |
| ATAGTTCGAGACACTTGCAG+AGG | - | chr7_4:60893708-60893727 | Msa1168310:CDS | 45.0% | |
| GGATTCGTATCAGCTGATGT+TGG | - | chr7_4:60893735-60893754 | Msa1168310:CDS | 45.0% | |
| AAACCAGAGGAAATTGGTGC+TGG | - | chr7_4:60893846-60893865 | Msa1168310:intron | 45.0% | |
| CATAGCCAAACATGTGACCT+TGG | + | chr7_4:60893875-60893894 | None:intergenic | 45.0% | |
| TAGCTCAGGTGTTTCATCTG+TGG | + | chr7_4:60893898-60893917 | None:intergenic | 45.0% | |
| TGAGTAAGTGGCATTAGCTC+AGG | + | chr7_4:60893912-60893931 | None:intergenic | 45.0% | |
| GTAGCAAGCACATGAGTAAG+TGG | + | chr7_4:60893924-60893943 | None:intergenic | 45.0% | |
| ACAAAACATGCGCATGGCTT+AGG | - | chr7_4:60893979-60893998 | Msa1168310:intron | 45.0% | |
| GTAACTTGGGTCTTACCATC+AGG | + | chr7_4:60894005-60894024 | None:intergenic | 45.0% | |
| TCCATCTCAATCCATCTGGT+CGG | - | chr7_4:60894195-60894214 | Msa1168310:intron | 45.0% | |
| CCAATAACAAACCGACCAGA+TGG | + | chr7_4:60894209-60894228 | None:intergenic | 45.0% | |
| !! | CCATCTGGTCGGTTTGTTAT+TGG | - | chr7_4:60894206-60894225 | Msa1168310:intron | 45.0% |
| !! | TCTGGTCGGTTTGTTATTGG+TGG | - | chr7_4:60894209-60894228 | Msa1168310:intron | 45.0% |
| TTATTGACACCTATGGTGGC+TGG | - | chr7_4:60894270-60894289 | Msa1168310:intron | 45.0% | |
| TATTGACACCTATGGTGGCT+GGG | - | chr7_4:60894271-60894290 | Msa1168310:intron | 45.0% | |
| CACTTCTATCGACCTTGGTT+GGG | + | chr7_4:60894331-60894350 | None:intergenic | 45.0% | |
| CAACCAAGGTCGATAGAAGT+GGG | - | chr7_4:60894330-60894349 | Msa1168310:intron | 45.0% | |
| AACCAAGGTCGATAGAAGTG+GGG | - | chr7_4:60894331-60894350 | Msa1168310:intron | 45.0% | |
| ! | CCAAAAGTGTGGTAGCTTCA+GGG | - | chr7_4:60894375-60894394 | Msa1168310:intron | 45.0% |
| ! | TGAAGTTGCCACCTCTTTTG+AGG | + | chr7_4:60894568-60894587 | None:intergenic | 45.0% |
| TCAAAAGAGGTGGCAACTTC+AGG | - | chr7_4:60894567-60894586 | Msa1168310:intron | 45.0% | |
| CAGGATCATCACGTCCAAAA+TGG | + | chr7_4:60894616-60894635 | None:intergenic | 45.0% | |
| GTGATGATCCTGATTTCACC+TGG | - | chr7_4:60894624-60894643 | Msa1168310:intron | 45.0% | |
| !! | AGCTTGCTAACTCAAGCCTT+TGG | + | chr7_4:60894671-60894690 | None:intergenic | 45.0% |
| TGAAGATACACTTCGGGGAT+TGG | - | chr7_4:60894792-60894811 | Msa1168310:intron | 45.0% | |
| TTGGGCACGTTAGCTCAATA+GGG | - | chr7_4:60894849-60894868 | Msa1168310:intron | 45.0% | |
| TACGTACCAAACGTGGTGGT+TGG | + | chr7_4:60892469-60892488 | None:intergenic | 50.0% | |
| GAGTTACGTACCAAACGTGG+TGG | + | chr7_4:60892473-60892492 | None:intergenic | 50.0% | |
| GGAGAGTTACGTACCAAACG+TGG | + | chr7_4:60892476-60892495 | None:intergenic | 50.0% | |
| ACCTGATCACACAGCTTGTC+GGG | + | chr7_4:60893555-60893574 | None:intergenic | 50.0% | |
| CGAGACACTTGCAGAGGAAT+TGG | - | chr7_4:60893714-60893733 | Msa1168310:CDS | 50.0% | |
| TCACCAGCACCAATTTCCTC+TGG | + | chr7_4:60893852-60893871 | None:intergenic | 50.0% | |
| !! | GAAATTGGTGCTGGTGACCA+AGG | - | chr7_4:60893855-60893874 | Msa1168310:intron | 50.0% |
| GGTGACCAAGGTCACATGTT+TGG | - | chr7_4:60893867-60893886 | Msa1168310:intron | 50.0% | |
| CCATGGCTCCGTTATCATTC+TGG | + | chr7_4:60894037-60894056 | None:intergenic | 50.0% | |
| !! | CCAGAATGATAACGGAGCCA+TGG | - | chr7_4:60894034-60894053 | Msa1168310:intron | 50.0% |
| AGATGAGGACAGTGTGCACA+CGG | + | chr7_4:60894067-60894086 | None:intergenic | 50.0% | |
| ! | CATCGTGCTGAGTTGAGATG+AGG | + | chr7_4:60894082-60894101 | None:intergenic | 50.0% |
| !! | ACCGACCAGATGGATTGAGA+TGG | + | chr7_4:60894199-60894218 | None:intergenic | 50.0% |
| ATTGACACCTATGGTGGCTG+GGG | - | chr7_4:60894272-60894291 | Msa1168310:intron | 50.0% | |
| CCACTTCTATCGACCTTGGT+TGG | + | chr7_4:60894332-60894351 | None:intergenic | 50.0% | |
| CCAACCAAGGTCGATAGAAG+TGG | - | chr7_4:60894329-60894348 | Msa1168310:intron | 50.0% | |
| TAGGCAAGCAGCCAAAAGTG+TGG | - | chr7_4:60894364-60894383 | Msa1168310:intron | 50.0% | |
| ! | GCCAAAAGTGTGGTAGCTTC+AGG | - | chr7_4:60894374-60894393 | Msa1168310:intron | 50.0% |
| ! | CCCTGAAGCTACCACACTTT+TGG | + | chr7_4:60894378-60894397 | None:intergenic | 50.0% |
| !!! | GAGCATTTTGACTTCAGGCC+AGG | - | chr7_4:60894521-60894540 | Msa1168310:intron | 50.0% |
| !! | ACTGCTGCTTACGGCCATTT+TGG | - | chr7_4:60894599-60894618 | Msa1168310:intron | 50.0% |
| ACAGTCTCCCAGGTGAAATC+AGG | + | chr7_4:60894635-60894654 | None:intergenic | 50.0% | |
| GAGTATCTTGACAGTCTCCC+AGG | + | chr7_4:60894645-60894664 | None:intergenic | 50.0% | |
| TACACTTCGGGGATTGGATG+TGG | - | chr7_4:60894798-60894817 | Msa1168310:intron | 50.0% | |
| TTCGGGGATTGGATGTGGAA+AGG | - | chr7_4:60894803-60894822 | Msa1168310:intron | 50.0% | |
| GTTGGGCACGTTAGCTCAAT+AGG | - | chr7_4:60894848-60894867 | Msa1168310:intron | 50.0% | |
| TGGGCACGTTAGCTCAATAG+GGG | - | chr7_4:60894850-60894869 | Msa1168310:intron | 50.0% | |
| ACGTGGTGGTTGGAGTGAGA+AGG | + | chr7_4:60892459-60892478 | None:intergenic | 55.0% | |
| CTCACTCCAACCACCACGTT+TGG | - | chr7_4:60892460-60892479 | Msa1168310:three_prime_UTR | 55.0% | |
| CCTGATCACACAGCTTGTCG+GGG | + | chr7_4:60893554-60893573 | None:intergenic | 55.0% | |
| GGACAGTGTGCACACGGATT+GGG | + | chr7_4:60894061-60894080 | None:intergenic | 55.0% | |
| AGGACAGTGTGCACACGGAT+TGG | + | chr7_4:60894062-60894081 | None:intergenic | 55.0% | |
| GTGAGTCCTGCATCTCCATG+AGG | + | chr7_4:60894236-60894255 | None:intergenic | 55.0% | |
| CATGGAGATGCAGGACTCAC+TGG | - | chr7_4:60894236-60894255 | Msa1168310:intron | 55.0% | |
| GAGATGCAGGACTCACTGGT+AGG | - | chr7_4:60894240-60894259 | Msa1168310:intron | 55.0% | |
| TGCCCCACTTCTATCGACCT+TGG | + | chr7_4:60894336-60894355 | None:intergenic | 55.0% | |
| ! | GGCCGTAAGCAGCAGTCTTT+TGG | + | chr7_4:60894595-60894614 | None:intergenic | 55.0% |
| CCCCGACAAGCTGTGTGATC+AGG | - | chr7_4:60893551-60893570 | Msa1168310:CDS | 60.0% | |
| TGCGCATGGCTTAGGCCTGA+TGG | - | chr7_4:60893987-60894006 | Msa1168310:intron | 60.0% | |
| !! | GTGCACACGGATTGGGACCA+TGG | + | chr7_4:60894054-60894073 | None:intergenic | 60.0% |
| GGTGGACCTCATGGAGATGC+AGG | - | chr7_4:60894227-60894246 | Msa1168310:intron | 60.0% | |
| ATGTGCACCCCAGCCACCAT+AGG | + | chr7_4:60894282-60894301 | None:intergenic | 60.0% | |
| TATGGTGGCTGGGGTGCACA+TGG | - | chr7_4:60894281-60894300 | Msa1168310:intron | 60.0% | |
| !! | CATGGAGGAGGTGCCTTCTC+TGG | - | chr7_4:60894299-60894318 | Msa1168310:intron | 60.0% |
| !! | AGGAGGTGCCTTCTCTGGCA+AGG | - | chr7_4:60894304-60894323 | Msa1168310:intron | 60.0% |
| GGTTGGGTCCTTGCCAGAGA+AGG | + | chr7_4:60894315-60894334 | None:intergenic | 60.0% | |
| CTCTGGCAAGGACCCAACCA+AGG | - | chr7_4:60894316-60894335 | Msa1168310:intron | 60.0% | |
| GGTGGCTGGGGTGCACATGG+AGG | - | chr7_4:60894284-60894303 | Msa1168310:intron | 70.0% | |
| GGCTGGGGTGCACATGGAGG+AGG | - | chr7_4:60894287-60894306 | Msa1168310:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 60892284 | 60895056 | 60892284 | ID=Msa1168310;Name=Msa1168310 |
| chr7_4 | mRNA | 60892284 | 60895056 | 60892284 | ID=Msa1168310-mRNA-1;Parent=Msa1168310;Name=Msa1168310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=198|0|0.5|1|0|0.5|2|377|390 |
| chr7_4 | exon | 60892284 | 60893833 | 60892284 | ID=Msa1168310-mRNA-1:exon:19218;Parent=Msa1168310-mRNA-1 |
| chr7_4 | exon | 60894859 | 60895056 | 60894859 | ID=Msa1168310-mRNA-1:exon:19217;Parent=Msa1168310-mRNA-1 |
| chr7_4 | five_prime_UTR | 60894859 | 60895056 | 60894859 | ID=Msa1168310-mRNA-1:five_prime_utr;Parent=Msa1168310-mRNA-1 |
| chr7_4 | CDS | 60892661 | 60893833 | 60892661 | ID=Msa1168310-mRNA-1:cds;Parent=Msa1168310-mRNA-1 |
| chr7_4 | three_prime_UTR | 60892284 | 60892660 | 60892284 | ID=Msa1168310-mRNA-1:three_prime_utr;Parent=Msa1168310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
