AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154550 MtrunA17_Chr7g0245601 96.433 813 16 6 1 808 1 805 0.0 1588
Msa1154550 MtrunA17_Chr4g0038761 63.305 357 127 2 444 796 87 443 3.13e-161 476
Msa1154550 MtrunA17_Chr1g0183641 54.098 366 160 5 433 794 115 476 2.15e-133 405
Msa1154550 MtrunA17_Chr7g0224271 37.474 475 243 10 344 795 230 673 6.86e-97 316
Msa1154550 MtrunA17_Chr1g0159461 38.753 369 211 6 441 795 225 592 9.13e-68 235
Msa1154550 MtrunA17_Chr8g0376381 36.693 387 218 11 433 806 161 533 2.85e-67 232
Msa1154550 MtrunA17_Chr3g0110971 36.573 391 210 11 433 797 211 589 1.20e-66 232
Msa1154550 MtrunA17_Chr2g0306641 36.061 391 206 11 431 795 115 487 4.39e-65 226
Msa1154550 MtrunA17_Chr4g0057291 35.659 387 215 10 435 796 286 663 4.82e-65 230
Msa1154550 MtrunA17_Chr3g0125811 36.585 369 219 6 441 795 203 570 1.78e-63 223
Msa1154550 MtrunA17_Chr2g0319091 34.834 422 247 10 396 794 162 578 1.35e-62 221
Msa1154550 MtrunA17_Chr5g0445331 35.638 376 223 8 438 795 158 532 1.71e-59 211
Msa1154550 MtrunA17_Chr5g0447691 34.574 376 222 8 437 795 176 544 2.94e-58 208
Msa1154550 MtrunA17_Chr5g0424131 36.041 394 224 12 427 794 107 498 3.34e-58 207
Msa1154550 MtrunA17_Chr3g0101141 33.602 372 232 6 438 795 172 542 1.48e-56 203
Msa1154550 MtrunA17_Chr8g0357601 35.000 380 227 7 434 795 175 552 1.49e-56 203
Msa1154550 MtrunA17_Chr4g0076091 34.492 374 229 7 436 794 170 542 2.41e-56 202
Msa1154550 MtrunA17_Chr1g0200401 33.166 398 225 12 431 795 70 459 4.96e-55 197
Msa1154550 MtrunA17_Chr2g0328391 32.041 387 245 7 426 796 286 670 8.10e-55 201
Msa1154550 MtrunA17_Chr3g0114841 36.500 400 206 16 432 794 111 499 9.00e-54 194
Msa1154550 MtrunA17_Chr4g0039661 34.584 373 222 10 438 795 190 555 1.21e-53 195
Msa1154550 MtrunA17_Chr7g0238891 30.923 401 261 7 410 796 343 741 3.61e-53 197
Msa1154550 MtrunA17_Chr4g0057891 31.443 388 245 8 427 795 135 520 1.01e-52 192
Msa1154550 MtrunA17_Chr3g0085681 29.176 425 240 8 430 795 14 436 1.34e-52 189
Msa1154550 MtrunA17_Chr4g0031701 29.327 416 267 8 400 796 220 627 1.39e-51 191
Msa1154550 MtrunA17_Chr4g0031711 30.769 403 260 8 412 796 333 734 5.03e-51 191
Msa1154550 MtrunA17_Chr2g0290241 31.746 378 236 8 436 795 52 425 1.22e-50 183
Msa1154550 MtrunA17_Chr4g0031741 31.300 377 239 8 436 796 279 651 6.80e-50 186
Msa1154550 MtrunA17_Chr4g0031721 30.570 386 253 6 426 796 300 685 1.32e-49 186
Msa1154550 MtrunA17_Chr4g0031731 29.730 407 259 9 409 796 229 627 1.39e-49 185
Msa1154550 MtrunA17_Chr2g0328341 32.208 385 241 9 428 796 259 639 1.60e-49 185
Msa1154550 MtrunA17_Chr2g0328381 31.152 382 249 8 428 796 262 642 5.92e-47 177
Msa1154550 MtrunA17_Chr2g0328411 29.243 383 254 6 426 794 274 653 6.70e-46 175
Msa1154550 MtrunA17_Chr5g0396491 40.566 212 121 2 425 633 40 249 5.40e-44 166
Msa1154550 MtrunA17_Chr5g0396491 38.255 149 87 3 649 795 333 478 8.72e-23 102
Msa1154550 MtrunA17_Chr2g0328431 29.255 376 249 7 435 796 283 655 3.62e-43 166
Msa1154550 MtrunA17_Chr2g0294471 31.606 386 240 11 431 795 194 576 1.69e-42 163
Msa1154550 MtrunA17_Chr2g0328361 30.000 380 231 8 428 796 261 616 6.82e-42 162
Msa1154550 MtrunA17_Chr2g0328401 30.117 342 220 7 436 762 285 622 9.82e-42 162
Msa1154550 MtrunA17_Chr4g0038851 40.670 209 121 2 427 633 34 241 1.25e-41 159
Msa1154550 MtrunA17_Chr4g0038851 37.584 149 88 3 649 795 324 469 2.12e-20 95.5
Msa1154550 MtrunA17_Chr5g0401131 28.460 383 242 13 441 796 114 491 2.36e-40 155
Msa1154550 MtrunA17_Chr2g0294461 30.412 388 245 12 431 795 200 585 4.12e-40 156
Msa1154550 MtrunA17_Chr7g0270031 30.990 384 247 11 425 795 176 554 4.24e-40 156
Msa1154550 MtrunA17_Chr2g0329591 27.020 396 252 9 431 796 64 452 4.02e-38 148
Msa1154550 MtrunA17_Chr8g0383981 28.000 400 251 13 417 796 115 497 7.92e-36 142
Msa1154550 MtrunA17_Chr3g0085361 27.893 337 184 7 516 795 16 350 1.12e-34 135
Msa1154550 MtrunA17_Chr2g0328371 32.271 251 153 7 514 750 4 251 9.44e-31 121
Msa1154550 MtrunA17_Chr4g0012071 25.427 468 305 12 349 795 107 551 3.08e-29 123
Msa1154550 MtrunA17_Chr7g0236851 27.688 372 240 11 442 794 295 656 2.76e-28 121
Msa1154550 MtrunA17_Chr7g0230771 27.493 371 245 8 438 795 372 731 1.11e-27 119
Msa1154550 MtrunA17_Chr1g0194621 25.849 383 256 12 436 795 141 518 3.42e-27 116
Msa1154550 MtrunA17_Chr7g0230731 26.273 373 247 8 438 795 369 728 8.81e-27 117
Msa1154550 MtrunA17_Chr8g0373561 27.224 371 241 13 442 795 183 541 6.61e-25 109
Msa1154550 MtrunA17_Chr6g0468561 28.756 386 224 15 442 795 296 662 1.17e-22 103
Msa1154550 MtrunA17_Chr5g0401421 23.684 418 252 14 441 796 35 447 2.70e-21 97.8
Msa1154550 MtrunA17_Chr8g0344101 25.320 391 243 13 441 795 223 600 4.44e-19 92.0
Msa1154550 MtrunA17_Chr4g0053901 23.981 417 250 14 441 796 59 469 3.58e-18 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154550 AT3G54220.1 82.630 403 63 4 398 796 252 651 0.0 669
Msa1154550 AT3G54220.1 43.284 134 44 5 176 296 74 188 6.93e-20 95.1
Msa1154550 AT5G41920.1 55.784 389 158 7 420 798 20 404 5.84e-143 427
Msa1154550 AT1G14920.1 37.995 379 206 11 433 795 164 529 4.92e-67 232
Msa1154550 AT1G66350.1 37.736 371 212 10 433 795 147 506 4.98e-67 231
Msa1154550 AT3G03450.1 37.696 382 208 11 433 795 175 545 1.22e-65 229
Msa1154550 AT2G01570.1 37.203 379 209 11 433 795 216 581 1.55e-63 224
Msa1154550 AT1G63100.1 35.602 382 223 9 436 794 247 628 8.95e-63 223
Msa1154550 AT1G63100.2 35.602 382 223 9 436 794 272 653 2.91e-62 222
Msa1154550 AT1G50600.3 36.290 372 222 6 438 795 156 526 3.67e-62 219
Msa1154550 AT1G50600.1 36.290 372 222 6 438 795 227 597 8.33e-62 219
Msa1154550 AT1G50600.2 36.290 372 222 6 438 795 231 601 9.75e-62 219
Msa1154550 AT2G04890.1 35.501 369 222 7 438 795 50 413 3.09e-61 213
Msa1154550 AT5G17490.1 36.340 377 216 11 432 795 151 516 4.39e-61 216
Msa1154550 AT5G66770.1 36.074 377 213 13 438 795 217 584 4.66e-56 203
Msa1154550 AT1G21450.1 34.688 369 227 5 441 795 225 593 2.31e-54 198
Msa1154550 AT5G48150.1 34.043 376 218 9 442 795 123 490 4.87e-54 195
Msa1154550 AT5G48150.4 34.043 376 218 9 442 795 123 490 4.87e-54 195
Msa1154550 AT5G48150.2 34.043 376 218 9 442 795 123 490 4.87e-54 195
Msa1154550 AT5G48150.3 34.043 376 218 9 442 795 123 490 4.87e-54 195
Msa1154550 AT4G17230.1 34.127 378 228 7 436 796 153 526 5.50e-53 193
Msa1154550 AT4G17230.2 34.127 378 228 7 436 796 153 526 5.50e-53 193
Msa1154550 AT5G59450.1 28.941 387 256 8 436 803 222 608 3.00e-50 187
Msa1154550 AT1G07530.1 31.139 395 257 6 417 796 372 766 2.80e-49 186
Msa1154550 AT2G37650.2 30.423 378 247 6 433 796 327 702 2.53e-48 183
Msa1154550 AT2G37650.1 30.423 378 247 6 433 796 339 714 3.04e-48 183
Msa1154550 AT1G55580.1 32.843 408 223 12 437 795 40 445 7.79e-45 168
Msa1154550 AT3G46600.1 29.250 400 259 9 418 796 184 580 9.80e-45 171
Msa1154550 AT3G46600.3 29.250 400 259 9 418 796 152 548 1.56e-44 169
Msa1154550 AT3G46600.2 30.108 372 241 8 441 796 4 372 2.50e-44 164
Msa1154550 AT2G29060.2 30.952 378 240 9 438 796 281 656 3.36e-44 170
Msa1154550 AT2G29060.1 30.952 378 240 9 438 796 318 693 3.61e-44 171
Msa1154550 AT3G50650.1 30.044 456 279 13 359 795 108 542 5.18e-44 167
Msa1154550 AT4G08250.1 29.925 401 261 9 412 794 78 476 1.19e-41 159
Msa1154550 AT4G37650.1 28.021 389 245 10 440 796 145 530 1.79e-40 157
Msa1154550 AT1G50420.1 40.097 207 121 1 430 633 46 252 2.30e-40 155
Msa1154550 AT1G50420.1 34.416 154 96 3 644 795 329 479 4.16e-19 92.0
Msa1154550 AT1G07520.1 28.861 395 254 9 426 796 303 694 4.79e-40 158
Msa1154550 AT1G07520.3 28.861 395 254 9 426 796 304 695 4.97e-40 158
Msa1154550 AT1G07520.2 28.861 395 254 9 426 796 139 530 5.04e-40 155
Msa1154550 AT1G07520.4 28.861 395 254 9 426 796 139 530 5.04e-40 155
Msa1154550 AT2G29065.1 28.796 382 244 10 440 796 251 629 2.84e-39 155
Msa1154550 AT5G52510.1 28.385 384 233 11 442 795 269 640 5.05e-31 130
Msa1154550 AT4G36710.1 26.509 381 252 11 432 795 116 485 1.71e-26 114
Msa1154550 AT3G60630.1 30.351 313 170 11 513 795 328 622 1.20e-24 110
Msa1154550 AT4G00150.1 27.671 365 234 12 442 795 209 554 9.35e-24 107
Msa1154550 AT3G49950.1 26.684 386 247 15 441 796 30 409 4.92e-22 100
Msa1154550 AT2G45160.1 29.508 305 180 10 513 795 348 639 5.67e-22 101

Find 182 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTTCCAACCAAGTTTA+AGG 0.116743 7_4:+42025516 None:intergenic
ATCAAAACATGTTTCCAAAT+TGG 0.136580 7_4:-42027368 Msa1154550:CDS
CGGTAAAGCTATATATAATT+TGG 0.182162 7_4:+42024912 None:intergenic
TCTCTATGCCTTTAGGCTTT+TGG 0.224738 7_4:+42028737 None:intergenic
AAAATTTAAGAGATATTATT+AGG 0.228425 7_4:-42025129 Msa1154550:three_prime_UTR
TCGAAAGCAAGATGAATATT+TGG 0.235330 7_4:+42028464 None:intergenic
TTACCTTCTTCCACAGAAAA+AGG 0.239785 7_4:-42028149 Msa1154550:CDS
TGCTTTCGATTCTATCAATA+TGG 0.250717 7_4:-42028450 Msa1154550:exon
GTGAGATAAAGTTTCATAAT+TGG 0.256096 7_4:-42025664 Msa1154550:CDS
TCAAAACATGTTTCCAAATT+GGG 0.256985 7_4:-42027367 Msa1154550:CDS
ATTTGTGGCACACCCCAATT+TGG 0.267731 7_4:+42027354 None:intergenic
ACAGTTACTGTTTCTGTTGC+TGG 0.272831 7_4:+42027788 None:intergenic
TCCACTACTGTTACCACTTT+AGG 0.285917 7_4:+42025875 None:intergenic
AGTCCCTGTTGATGGCCTTT+TGG 0.294422 7_4:-42025194 Msa1154550:three_prime_UTR
TATACTTTGGTTGAGGATAA+TGG 0.311713 7_4:-42025542 Msa1154550:CDS
AGAAGAGAGGGGTGATAATA+TGG 0.316305 7_4:-42025026 Msa1154550:three_prime_UTR
GCTGCTTGTGCTTTGTTCAA+TGG 0.326297 7_4:-42028428 Msa1154550:CDS
AATAGATTCCCTGCAGTTAC+TGG 0.329981 7_4:-42025325 Msa1154550:three_prime_UTR
GGTGGTGGTGGTGTTGTTGC+AGG 0.330072 7_4:+42027225 None:intergenic
CATTCTCTATATGATGTTAC+TGG 0.333927 7_4:-42026520 Msa1154550:CDS
GAGCAATGCAGGTTCATTCT+TGG 0.338861 7_4:-42025843 Msa1154550:CDS
TTAATAGTATGAAATAATTA+AGG 0.344582 7_4:+42028533 None:intergenic
ACACGGTTCTCTATGCCTTT+AGG 0.346413 7_4:+42028730 None:intergenic
TCGCAGCTTTCAACGCCTTT+CGG 0.347062 7_4:-42027039 Msa1154550:CDS
GAACGTTGTGTTGGTTTAAG+AGG 0.350489 7_4:+42028571 None:intergenic
ATACATGTGTGTTGTGTTGT+TGG 0.357980 7_4:+42028597 None:intergenic
ATGAGTGTAGTTTGAGTTTG+AGG 0.358577 7_4:+42027908 None:intergenic
TTTCCAACTTTCTCAGCAAC+AGG 0.359463 7_4:+42026604 None:intergenic
TCAGCATTATTTGATTCTCT+TGG 0.361167 7_4:-42025791 Msa1154550:CDS
TTTATCTCACCACTCCTTGA+TGG 0.363245 7_4:+42025677 None:intergenic
ACACAAGCTAGTCTTCTTCT+TGG 0.369111 7_4:-42025584 Msa1154550:CDS
AACCATGTTCCTAATATTTG+TGG 0.381285 7_4:-42027858 Msa1154550:CDS
AATCTAATCTCAGCTTAGTT+AGG 0.382540 7_4:-42025354 Msa1154550:three_prime_UTR
GTTTCTGTTGCTGGTTCTGT+TGG 0.383646 7_4:+42027797 None:intergenic
GGAGATAACGTTGTGAAGAT+TGG 0.389784 7_4:+42028634 None:intergenic
AAACCTCAGCTGCAACAAAC+TGG 0.395103 7_4:-42027704 Msa1154550:CDS
TATGTGAGACTCACTGGATT+AGG 0.397735 7_4:-42026709 Msa1154550:CDS
TGGTCATGTAGTAATGATTT+CGG 0.404721 7_4:-42025305 Msa1154550:three_prime_UTR
TAACTCTTCACCTTCTATGA+TGG 0.414564 7_4:-42027730 Msa1154550:CDS
CAGAAGCTGTTGCTGTTCAT+TGG 0.419326 7_4:-42026549 Msa1154550:CDS
AGGGTGCAAAACAAGGAAAA+AGG 0.419890 7_4:+42028785 None:intergenic
TTCATTCTTGGGAAGGTTTG+TGG 0.421301 7_4:-42025831 Msa1154550:CDS
TCAAGAACAAGAGCAAGGTT+TGG 0.421529 7_4:+42027585 None:intergenic
CAAAAGCTTCTTGTATAGCT+TGG 0.424689 7_4:+42026833 None:intergenic
AAAACCAAAAGGCCATCAAC+AGG 0.426582 7_4:+42025190 None:intergenic
GCTGCAACAAACTGGATTGA+TGG 0.429027 7_4:-42027696 Msa1154550:CDS
ATGGTATCCTTAAACTTGGT+TGG 0.429657 7_4:-42025523 Msa1154550:CDS
AGCAATGCAGGTTCATTCTT+GGG 0.429990 7_4:-42025842 Msa1154550:CDS
AGATGAATATTTGGTTGGGT+TGG 0.430727 7_4:+42028473 None:intergenic
ACTAGCATAGTCCCTGTTGA+TGG 0.430975 7_4:-42025202 Msa1154550:three_prime_UTR
CCCTTCTGAAGGGTATACTT+TGG 0.433004 7_4:-42025555 Msa1154550:CDS
AGACTAGTGAGTTCATGTTT+AGG 0.434001 7_4:-42026967 Msa1154550:CDS
ATCTTCACTACTGATATTGC+TGG 0.434098 7_4:+42028364 None:intergenic
GATTCTCTTGGTTCAAGCTA+TGG 0.434363 7_4:-42025779 Msa1154550:CDS
GATGAATATTTGGTTGGGTT+GGG 0.435131 7_4:+42028474 None:intergenic
ACGTTATCTCCTTGTAACTT+TGG 0.436203 7_4:-42028622 Msa1154550:five_prime_UTR
GGTAAAGCTATATATAATTT+GGG 0.436714 7_4:+42024913 None:intergenic
AAGCAAGATGAATATTTGGT+TGG 0.439952 7_4:+42028468 None:intergenic
TGTTGCTGGTTCTGTTGGGT+TGG 0.440162 7_4:+42027802 None:intergenic
GACGACTCATATTATAACTT+TGG 0.440637 7_4:+42025247 None:intergenic
CAATAACAACAATAACCCTT+TGG 0.441738 7_4:-42027331 Msa1154550:CDS
AAGGATTCTCTTCACATAGT+AGG 0.442486 7_4:+42028668 None:intergenic
TTTCCTGTTGCTGAGAAAGT+TGG 0.444010 7_4:-42026607 Msa1154550:CDS
TCACTGAAGCGGTACACATT+TGG 0.444862 7_4:+42025076 None:intergenic
CATATCCTTGCTTCAAGACC+AGG 0.445706 7_4:-42026742 Msa1154550:CDS
ATTGAAGAAGTAATGTTAGA+AGG 0.446149 7_4:+42027121 None:intergenic
AGCAAGATGAATATTTGGTT+GGG 0.446311 7_4:+42028469 None:intergenic
TTATTGTTGTTATTGATTTG+TGG 0.447216 7_4:+42027339 None:intergenic
TTTCTGTTGCTGGTTCTGTT+GGG 0.451663 7_4:+42027798 None:intergenic
CTTGGCATGTTCCCTTCTGA+AGG 0.451744 7_4:-42025566 Msa1154550:CDS
GTTTGCTTACTGCTTCTGCT+TGG 0.455432 7_4:-42025490 Msa1154550:CDS
TTGCTCTTGTTCTTGAACAT+AGG 0.455705 7_4:-42027578 Msa1154550:CDS
TTGAGATTGTTGGAAGAAGA+AGG 0.456597 7_4:+42027936 None:intergenic
CGTAACGTTCTTGCAGTTGG+TGG 0.465242 7_4:-42025701 Msa1154550:CDS
GAGATAACGTTGTGAAGATT+GGG 0.468094 7_4:+42028635 None:intergenic
TTTAGAGGTATCTCTTTGGC+TGG 0.469891 7_4:-42025617 Msa1154550:CDS
GTTTGAAGCACTATTGTTGT+TGG 0.471893 7_4:+42028388 None:intergenic
CTAGTTAATAATAGAAGAGA+GGG 0.474588 7_4:-42025038 Msa1154550:three_prime_UTR
CCTCCTTATGTGAGACTCAC+TGG 0.475283 7_4:-42026715 Msa1154550:CDS
TGAGGAATTGTTGAGATTGT+TGG 0.475428 7_4:+42027926 None:intergenic
GCAACAGGAAAGAACTCAAA+AGG 0.485861 7_4:+42026619 None:intergenic
TTGTTGTTGTGGCATGTTGG+TGG 0.486113 7_4:+42028319 None:intergenic
GAACAAGACTTGAGCAATGC+AGG 0.491335 7_4:-42025854 Msa1154550:CDS
TTTCTCTCAGGAACAACACT+TGG 0.491378 7_4:+42027531 None:intergenic
ACCACCAACTTCTGCTGAGT+TGG 0.493808 7_4:-42027208 Msa1154550:CDS
GTTCAGATACAAACACTTTG+TGG 0.494320 7_4:-42026498 Msa1154550:CDS
TCAGCAGAAGTTGGTGGTGG+TGG 0.499191 7_4:+42027213 None:intergenic
CAAAAGAAGAAAGATGAAGA+AGG 0.499689 7_4:-42027150 Msa1154550:CDS
AAATGAGAGAATTTCACAAA+TGG 0.504284 7_4:+42026865 None:intergenic
ATGATTTCGGTAGTTGATGA+AGG 0.505826 7_4:-42025292 Msa1154550:three_prime_UTR
ATGTAGGTTGGCACCTAAAG+TGG 0.505838 7_4:-42025888 Msa1154550:intron
TGAAGGGTATACTTTGGTTG+AGG 0.506995 7_4:-42025549 Msa1154550:CDS
TAGCAACATAGTGGAGTAGT+TGG 0.507219 7_4:+42027959 None:intergenic
TGATCTTGTTGTGTTGATTG+TGG 0.509172 7_4:+42027291 None:intergenic
TATGACATTGTTGGAATGAA+AGG 0.510105 7_4:+42025460 None:intergenic
AATCCAGTTTGTTGCAGCTG+AGG 0.510974 7_4:+42027701 None:intergenic
TTGTTGTTGTTGTGGCATGT+TGG 0.511794 7_4:+42028316 None:intergenic
ATAGGGATGCTACAAAGGAT+TGG 0.514786 7_4:+42025161 None:intergenic
AAAATCTATTGTTGTTGTTG+TGG 0.516540 7_4:+42028225 None:intergenic
CACTGGATTAGGTACTTCCA+TGG 0.517366 7_4:-42026698 Msa1154550:CDS
ACTAGTTAATAATAGAAGAG+AGG 0.517820 7_4:-42025039 Msa1154550:three_prime_UTR
ATGGAAACACTTGAAGCTAC+TGG 0.517893 7_4:-42026679 Msa1154550:CDS
CTCACATAAGGAGGTCCACC+TGG 0.520829 7_4:+42026724 None:intergenic
CAAAACATGTTTCCAAATTG+GGG 0.522311 7_4:-42027366 Msa1154550:CDS
AGTAGCTTCAAGTGTTTCCA+TGG 0.526271 7_4:+42026681 None:intergenic
ATGCAAGGTTTACAATGGCC+TGG 0.527385 7_4:-42026772 Msa1154550:CDS
GATAATGGTATCCTTAAACT+TGG 0.528102 7_4:-42025527 Msa1154550:CDS
ATTCGTAACGTTCTTGCAGT+TGG 0.528879 7_4:-42025704 Msa1154550:CDS
ACACTTTGTGGCTCTTGCAA+AGG 0.531826 7_4:-42026486 Msa1154550:intron
CATAACTGATGGATCTATCT+CGG 0.531852 7_4:-42025431 Msa1154550:exon
TTGGCATGTTCCCTTCTGAA+GGG 0.532685 7_4:-42025565 Msa1154550:CDS
AGTAACTGTAACATAAGTTC+TGG 0.539385 7_4:-42027774 Msa1154550:CDS
CTAACATTGTTGATGAGTTG+AGG 0.539907 7_4:+42027630 None:intergenic
ACACTAGAAGAACGTTGTGT+TGG 0.540132 7_4:+42028562 None:intergenic
CTGCATGACAAAGTTACTGT+AGG 0.540279 7_4:-42025378 Msa1154550:three_prime_UTR
AGAGCAAGGTTTGGATTACA+AGG 0.541984 7_4:+42027594 None:intergenic
TGCATGACAAAGTTACTGTA+GGG 0.542024 7_4:-42025377 Msa1154550:three_prime_UTR
ACCAAAGTATACCCTTCAGA+AGG 0.543263 7_4:+42025554 None:intergenic
ATTGGAATATGAAAACCAAA+AGG 0.543385 7_4:+42025179 None:intergenic
TTGGTTGTGACGGTCACAGT+GGG 0.545379 7_4:+42027978 None:intergenic
TTGCAGTTGGTGGACCATCA+AGG 0.546702 7_4:-42025691 Msa1154550:CDS
AATGTGTAAAGTACTAGTAC+AGG 0.547012 7_4:+42028506 None:intergenic
GCATGGGAGGGTGCAAAACA+AGG 0.547235 7_4:+42028778 None:intergenic
TTGTTGGTTCCAAAGTTACA+AGG 0.549184 7_4:+42028613 None:intergenic
AGAAACATCCAAAAGCCTAA+AGG 0.549835 7_4:-42028745 Msa1154550:five_prime_UTR
TGTGTTGATTGTGGTTGTGA+AGG 0.550280 7_4:+42027300 None:intergenic
ATGCAGGTTCATTCTTGGGA+AGG 0.550894 7_4:-42025838 Msa1154550:CDS
ATTGCCAACTCAGCAGAAGT+TGG 0.551048 7_4:+42027204 None:intergenic
GAGGTTTCATCCATCATAGA+AGG 0.554125 7_4:+42027720 None:intergenic
GGGTGATAATATGGCTGAAG+AGG 0.554663 7_4:-42025017 Msa1154550:three_prime_UTR
TCATACCACATCATAACTGA+TGG 0.555692 7_4:-42025442 Msa1154550:exon
GAGGAATTAACATTAGAAGC+AGG 0.557000 7_4:+42027462 None:intergenic
AGAAGAAGGTAGCAACATAG+TGG 0.560888 7_4:+42027950 None:intergenic
ATTGTTGATGAGTTGAGGAA+TGG 0.561897 7_4:+42027635 None:intergenic
TGTTTCTGATAAATCTCGCA+TGG 0.562420 7_4:+42028761 None:intergenic
ACTACATGACCAGTAACTGC+AGG 0.562801 7_4:+42025316 None:intergenic
AAAGGATAGGGATGCTACAA+AGG 0.563027 7_4:+42025156 None:intergenic
ATGATGTGGTATGACATTGT+TGG 0.567016 7_4:+42025451 None:intergenic
AATCCAGTGAGTCTCACATA+AGG 0.568715 7_4:+42026712 None:intergenic
ATTATTATTATTTGTACCTG+CGG 0.572319 7_4:+42028103 None:intergenic
AATAACAAGAAAGAAGAAAG+AGG 0.575018 7_4:-42027184 Msa1154550:CDS
ATAGATCTTGATATCATGCA+AGG 0.576982 7_4:-42026787 Msa1154550:CDS
AGAGAGTGAAGAGAGACATG+TGG 0.579883 7_4:-42025753 Msa1154550:CDS
GTGAAGGTAAAGTAACCAAA+GGG 0.582361 7_4:+42027316 None:intergenic
GTCCACCTGGTCTTGAAGCA+AGG 0.584919 7_4:+42026737 None:intergenic
AAGATTGGGACAGTAGCTAA+AGG 0.589668 7_4:+42028649 None:intergenic
CTGATAAATCTCGCATGGGA+GGG 0.593642 7_4:+42028766 None:intergenic
GCCAACTCAGCAGAAGTTGG+TGG 0.593665 7_4:+42027207 None:intergenic
TCTGATAAATCTCGCATGGG+AGG 0.597290 7_4:+42028765 None:intergenic
TGATTATGTAGTGTGTGTGG+TGG 0.599368 7_4:+42026928 None:intergenic
ATATCATGCAAGGTTTACAA+TGG 0.601849 7_4:-42026777 Msa1154550:CDS
ATGACATTGTTGGAATGAAA+GGG 0.601926 7_4:+42025461 None:intergenic
TGTGAAGGTAAAGTAACCAA+AGG 0.611507 7_4:+42027315 None:intergenic
AACTCAGCAGAAGTTGGTGG+TGG 0.612065 7_4:+42027210 None:intergenic
AACCACAAATATTAGGAACA+TGG 0.615138 7_4:+42027856 None:intergenic
GGTAGTTGATGAAGGTCGGT+CGG 0.616221 7_4:-42025284 Msa1154550:three_prime_UTR
TTTCGGTAGTTGATGAAGGT+CGG 0.618147 7_4:-42025288 Msa1154550:three_prime_UTR
TATGTTCAAGAACAAGAGCA+AGG 0.620046 7_4:+42027580 None:intergenic
GAGTGAAGAGAGACATGTGG+TGG 0.624909 7_4:-42025750 Msa1154550:CDS
CCAAAGTATACCCTTCAGAA+GGG 0.626039 7_4:+42025555 None:intergenic
AGTGGAGTAGTTGGTTGTGA+CGG 0.635058 7_4:+42027968 None:intergenic
GTTTCTGATAAATCTCGCAT+GGG 0.637360 7_4:+42028762 None:intergenic
TAGATCCATCAGTTATGATG+TGG 0.639240 7_4:+42025437 None:intergenic
ACCTAAAGTGGTAACAGTAG+TGG 0.640826 7_4:-42025876 Msa1154550:CDS
CCAGTGAGTCTCACATAAGG+AGG 0.642698 7_4:+42026715 None:intergenic
CTTTGTGCTGATGTACCGAA+AGG 0.646157 7_4:+42027024 None:intergenic
TTACCGTGTGTTATATAATG+CGG 0.646734 7_4:-42024895 Msa1154550:three_prime_UTR
ACAACAACAACACTAGCCGC+AGG 0.647867 7_4:-42028119 Msa1154550:CDS
CTACATGACCAGTAACTGCA+GGG 0.648255 7_4:+42025317 None:intergenic
GTTGGTTGTGACGGTCACAG+TGG 0.651008 7_4:+42027977 None:intergenic
TCACCGCATTATATAACACA+CGG 0.656136 7_4:+42024892 None:intergenic
ATCCTTGCTTCAAGACCAGG+TGG 0.657302 7_4:-42026739 Msa1154550:CDS
AAACCAAAAGGCCATCAACA+GGG 0.658918 7_4:+42025191 None:intergenic
AGAGAAAAGCTTCAACAGTG+TGG 0.663978 7_4:-42025641 Msa1154550:CDS
TAGTTAATAATAGAAGAGAG+GGG 0.664576 7_4:-42025037 Msa1154550:three_prime_UTR
AGGTAAAGTACAATTCAATG+AGG 0.676877 7_4:+42028166 None:intergenic
ACATTGTTGGAATGAAAGGG+AGG 0.683514 7_4:+42025464 None:intergenic
GTTGGTGGACCATCAAGGAG+TGG 0.725373 7_4:-42025686 Msa1154550:CDS
GAGGAACAATGTCATCAACA+CGG 0.736939 7_4:+42027424 None:intergenic
TCTAGCATAACATAATAACA+CGG 0.746008 7_4:+42028713 None:intergenic
TGGTTGTGACGGTCACAGTG+GGG 0.753890 7_4:+42027979 None:intergenic
ACGGTTCATGAGTTTCACTG+AGG 0.765117 7_4:+42027443 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAGTATGAAATAATTA+AGG + chr7_4:42025175-42025194 None:intergenic 10.0%
!!! TAAATTTTAATTAAAGGATA+GGG + chr7_4:42028564-42028583 None:intergenic 10.0%
!!! TTAAATTTTAATTAAAGGAT+AGG + chr7_4:42028565-42028584 None:intergenic 10.0%
!!! ATCTCTTAAATTTTAATTAA+AGG + chr7_4:42028570-42028589 None:intergenic 10.0%
!! AAAATTTAAGAGATATTATT+AGG - chr7_4:42028576-42028595 Msa1154550:five_prime_UTR 10.0%
!! ATTATTATTATTTGTACCTG+CGG + chr7_4:42025605-42025624 None:intergenic 20.0%
!!! TTATTGTTGTTATTGATTTG+TGG + chr7_4:42026369-42026388 None:intergenic 20.0%
!! GGTAATAGTAATAAAAGTTT+AGG - chr7_4:42027244-42027263 Msa1154550:CDS 20.0%
!! ATATAATCTACATGATTTAG+TGG - chr7_4:42027340-42027359 Msa1154550:CDS 20.0%
!! TATAGTTTCTAATTATCCAT+TGG - chr7_4:42027637-42027656 Msa1154550:CDS 20.0%
!! TTCAAAAATACACAAATAAG+AGG - chr7_4:42027738-42027757 Msa1154550:CDS 20.0%
!! TTTATCTGTGTTATATATGT+AGG - chr7_4:42027801-42027820 Msa1154550:CDS 20.0%
!!! TTTTATTAAGAGAACTCTTT+AGG - chr7_4:42028737-42028756 Msa1154550:five_prime_UTR 20.0%
!!! TGTGATATTTCTTACTTTTA+TGG - chr7_4:42028767-42028786 Msa1154550:five_prime_UTR 20.0%
!!! GTGATATTTCTTACTTTTAT+GGG - chr7_4:42028768-42028787 Msa1154550:five_prime_UTR 20.0%
!! GGTAAAGCTATATATAATTT+GGG + chr7_4:42028795-42028814 None:intergenic 20.0%
! TCTAGCATAACATAATAACA+CGG + chr7_4:42024995-42025014 None:intergenic 25.0%
!!! AAAAGTGCTTAGAAAAAGAA+TGG - chr7_4:42025429-42025448 Msa1154550:exon 25.0%
!! AAAATCTATTGTTGTTGTTG+TGG + chr7_4:42025483-42025502 None:intergenic 25.0%
! ATCAAAACATGTTTCCAAAT+TGG - chr7_4:42026337-42026356 Msa1154550:intron 25.0%
! TCAAAACATGTTTCCAAATT+GGG - chr7_4:42026338-42026357 Msa1154550:intron 25.0%
! AATAACAAGAAAGAAGAAAG+AGG - chr7_4:42026521-42026540 Msa1154550:CDS 25.0%
! ATTGAAGAAGTAATGTTAGA+AGG + chr7_4:42026587-42026606 None:intergenic 25.0%
! AAATGAGAGAATTTCACAAA+TGG + chr7_4:42026843-42026862 None:intergenic 25.0%
! CAAACTATAACAACATTTCA+TGG + chr7_4:42027282-42027301 None:intergenic 25.0%
! TATACAAAACCAACAAGAAT+TGG + chr7_4:42027321-42027340 None:intergenic 25.0%
!! TTACCTTTAGAAGAGAAAAA+AGG + chr7_4:42027463-42027482 None:intergenic 25.0%
!! TTCTCTTCTAAAGGTAAAAT+TGG - chr7_4:42027466-42027485 Msa1154550:CDS 25.0%
! GTGAGATAAAGTTTCATAAT+TGG - chr7_4:42028041-42028060 Msa1154550:CDS 25.0%
! ATTGGAATATGAAAACCAAA+AGG + chr7_4:42028529-42028548 None:intergenic 25.0%
! ACTAGTTAATAATAGAAGAG+AGG - chr7_4:42028666-42028685 Msa1154550:five_prime_UTR 25.0%
! CTAGTTAATAATAGAAGAGA+GGG - chr7_4:42028667-42028686 Msa1154550:five_prime_UTR 25.0%
! TAGTTAATAATAGAAGAGAG+GGG - chr7_4:42028668-42028687 Msa1154550:five_prime_UTR 25.0%
! CGGTAAAGCTATATATAATT+TGG + chr7_4:42028796-42028815 None:intergenic 25.0%
! AATGTGTAAAGTACTAGTAC+AGG + chr7_4:42025202-42025221 None:intergenic 30.0%
AGCAAGATGAATATTTGGTT+GGG + chr7_4:42025239-42025258 None:intergenic 30.0%
AAGCAAGATGAATATTTGGT+TGG + chr7_4:42025240-42025259 None:intergenic 30.0%
TCGAAAGCAAGATGAATATT+TGG + chr7_4:42025244-42025263 None:intergenic 30.0%
TGCTTTCGATTCTATCAATA+TGG - chr7_4:42025255-42025274 Msa1154550:three_prime_UTR 30.0%
! AAAAAGAATGGCTTCTGAAA+TGG - chr7_4:42025441-42025460 Msa1154550:exon 30.0%
AGGTAAAGTACAATTCAATG+AGG + chr7_4:42025542-42025561 None:intergenic 30.0%
AACCATGTTCCTAATATTTG+TGG - chr7_4:42025847-42025866 Msa1154550:CDS 30.0%
AACCACAAATATTAGGAACA+TGG + chr7_4:42025852-42025871 None:intergenic 30.0%
CCAGAAAAACCACAAATATT+AGG + chr7_4:42025859-42025878 None:intergenic 30.0%
! CCTAATATTTGTGGTTTTTC+TGG - chr7_4:42025856-42025875 Msa1154550:CDS 30.0%
AGTAACTGTAACATAAGTTC+TGG - chr7_4:42025931-42025950 Msa1154550:intron 30.0%
CTTGATGAATCAGAAAAATG+AGG + chr7_4:42026303-42026322 None:intergenic 30.0%
CAAAACATGTTTCCAAATTG+GGG - chr7_4:42026339-42026358 Msa1154550:intron 30.0%
CAATAACAACAATAACCCTT+TGG - chr7_4:42026374-42026393 Msa1154550:intron 30.0%
CAAAAGAAGAAAGATGAAGA+AGG - chr7_4:42026555-42026574 Msa1154550:CDS 30.0%
!! TTTTGATTATGTAGTGTGTG+TGG + chr7_4:42026783-42026802 None:intergenic 30.0%
ATAGATCTTGATATCATGCA+AGG - chr7_4:42026918-42026937 Msa1154550:CDS 30.0%
ATATCATGCAAGGTTTACAA+TGG - chr7_4:42026928-42026947 Msa1154550:CDS 30.0%
! TCTGATTTTGCATCTAAACT+TGG - chr7_4:42027059-42027078 Msa1154550:CDS 30.0%
CATTCTCTATATGATGTTAC+TGG - chr7_4:42027185-42027204 Msa1154550:CDS 30.0%
! TACTCTTTTCCAATTCTTGT+TGG - chr7_4:42027309-42027328 Msa1154550:CDS 30.0%
!!! CTACCTTTTTTCTCTTCTAA+AGG - chr7_4:42027457-42027476 Msa1154550:CDS 30.0%
AATTATCCATTGGATTTGCA+TGG - chr7_4:42027647-42027666 Msa1154550:CDS 30.0%
ATTATCCATTGGATTTGCAT+GGG - chr7_4:42027648-42027667 Msa1154550:CDS 30.0%
! TTTGCATGGGATTTTTATTC+TGG - chr7_4:42027661-42027680 Msa1154550:CDS 30.0%
TCTGTGTTATATATGTAGGT+TGG - chr7_4:42027805-42027824 Msa1154550:CDS 30.0%
TCAGCATTATTTGATTCTCT+TGG - chr7_4:42027914-42027933 Msa1154550:CDS 30.0%
TATACTTTGGTTGAGGATAA+TGG - chr7_4:42028163-42028182 Msa1154550:CDS 30.0%
! GATAATGGTATCCTTAAACT+TGG - chr7_4:42028178-42028197 Msa1154550:CDS 30.0%
ATGACATTGTTGGAATGAAA+GGG + chr7_4:42028247-42028266 None:intergenic 30.0%
TATGACATTGTTGGAATGAA+AGG + chr7_4:42028248-42028267 None:intergenic 30.0%
AATCTAATCTCAGCTTAGTT+AGG - chr7_4:42028351-42028370 Msa1154550:CDS 30.0%
TGGTCATGTAGTAATGATTT+CGG - chr7_4:42028400-42028419 Msa1154550:CDS 30.0%
GACGACTCATATTATAACTT+TGG + chr7_4:42028461-42028480 None:intergenic 30.0%
GTTTCTGATAAATCTCGCAT+GGG + chr7_4:42024946-42024965 None:intergenic 35.0%
! TGTTTCTGATAAATCTCGCA+TGG + chr7_4:42024947-42024966 None:intergenic 35.0%
AGAAACATCCAAAAGCCTAA+AGG - chr7_4:42024960-42024979 Msa1154550:three_prime_UTR 35.0%
AAGGATTCTCTTCACATAGT+AGG + chr7_4:42025040-42025059 None:intergenic 35.0%
GAGATAACGTTGTGAAGATT+GGG + chr7_4:42025073-42025092 None:intergenic 35.0%
ACGTTATCTCCTTGTAACTT+TGG - chr7_4:42025083-42025102 Msa1154550:three_prime_UTR 35.0%
!! TTGTTGGTTCCAAAGTTACA+AGG + chr7_4:42025095-42025114 None:intergenic 35.0%
ATACATGTGTGTTGTGTTGT+TGG + chr7_4:42025111-42025130 None:intergenic 35.0%
GATGAATATTTGGTTGGGTT+GGG + chr7_4:42025234-42025253 None:intergenic 35.0%
AGATGAATATTTGGTTGGGT+TGG + chr7_4:42025235-42025254 None:intergenic 35.0%
! GTTTGAAGCACTATTGTTGT+TGG + chr7_4:42025320-42025339 None:intergenic 35.0%
ATCTTCACTACTGATATTGC+TGG + chr7_4:42025344-42025363 None:intergenic 35.0%
! AGCACTTTTCTTTCAGAATG+AGG + chr7_4:42025418-42025437 None:intergenic 35.0%
TTACCTTCTTCCACAGAAAA+AGG - chr7_4:42025556-42025575 Msa1154550:CDS 35.0%
! TGTTGTAACACCTTTTTCTG+TGG + chr7_4:42025569-42025588 None:intergenic 35.0%
TTGAGATTGTTGGAAGAAGA+AGG + chr7_4:42025772-42025791 None:intergenic 35.0%
TGAGGAATTGTTGAGATTGT+TGG + chr7_4:42025782-42025801 None:intergenic 35.0%
! ATGAGTGTAGTTTGAGTTTG+AGG + chr7_4:42025800-42025819 None:intergenic 35.0%
!! TTTTCAACAACCACTTGTTG+AGG - chr7_4:42025819-42025838 Msa1154550:CDS 35.0%
!!! TGGTTTTGAGATGGAAAAAG+TGG + chr7_4:42025886-42025905 None:intergenic 35.0%
TAACTCTTCACCTTCTATGA+TGG - chr7_4:42025975-42025994 Msa1154550:intron 35.0%
!! CTGGATTGATGGTATTTTGA+AGG - chr7_4:42026020-42026039 Msa1154550:intron 35.0%
! ATTGTTGATGAGTTGAGGAA+TGG + chr7_4:42026073-42026092 None:intergenic 35.0%
! CTAACATTGTTGATGAGTTG+AGG + chr7_4:42026078-42026097 None:intergenic 35.0%
TATGTTCAAGAACAAGAGCA+AGG + chr7_4:42026128-42026147 None:intergenic 35.0%
TTGCTCTTGTTCTTGAACAT+AGG - chr7_4:42026127-42026146 Msa1154550:intron 35.0%
!!! GTGTTGTTTCTTTTTCTCTC+AGG + chr7_4:42026189-42026208 None:intergenic 35.0%
GAGGAATTAACATTAGAAGC+AGG + chr7_4:42026246-42026265 None:intergenic 35.0%
GTGAAGGTAAAGTAACCAAA+GGG + chr7_4:42026392-42026411 None:intergenic 35.0%
TGTGAAGGTAAAGTAACCAA+AGG + chr7_4:42026393-42026412 None:intergenic 35.0%
!! TGATCTTGTTGTGTTGATTG+TGG + chr7_4:42026417-42026436 None:intergenic 35.0%
AGACTAGTGAGTTCATGTTT+AGG - chr7_4:42026738-42026757 Msa1154550:CDS 35.0%
!!! TCAGCTTTTCAAGTCTTCAA+TGG - chr7_4:42026810-42026829 Msa1154550:CDS 35.0%
CAAAAGCTTCTTGTATAGCT+TGG + chr7_4:42026875-42026894 None:intergenic 35.0%
GTTCAGATACAAACACTTTG+TGG - chr7_4:42027207-42027226 Msa1154550:CDS 35.0%
TGATTTAGTGGTTGCTGATA+TGG - chr7_4:42027352-42027371 Msa1154550:CDS 35.0%
GTGAGCACTATAGTCTATAA+AGG + chr7_4:42027430-42027449 None:intergenic 35.0%
AAAATCCCATGCAAATCCAA+TGG + chr7_4:42027656-42027675 None:intergenic 35.0%
!!! TGGTTTTAGAGGTATCTCTT+TGG - chr7_4:42028084-42028103 Msa1154550:CDS 35.0%
ATGGTATCCTTAAACTTGGT+TGG - chr7_4:42028182-42028201 Msa1154550:CDS 35.0%
GATCTTTCCAACCAAGTTTA+AGG + chr7_4:42028192-42028211 None:intergenic 35.0%
ATGATGTGGTATGACATTGT+TGG + chr7_4:42028257-42028276 None:intergenic 35.0%
TCATACCACATCATAACTGA+TGG - chr7_4:42028263-42028282 Msa1154550:CDS 35.0%
TAGATCCATCAGTTATGATG+TGG + chr7_4:42028271-42028290 None:intergenic 35.0%
! CATAACTGATGGATCTATCT+CGG - chr7_4:42028274-42028293 Msa1154550:CDS 35.0%
TGCATGACAAAGTTACTGTA+GGG - chr7_4:42028328-42028347 Msa1154550:CDS 35.0%
!! ATGATTTCGGTAGTTGATGA+AGG - chr7_4:42028413-42028432 Msa1154550:CDS 35.0%
! TTTTTGTGTCATCACTGAAG+CGG + chr7_4:42028643-42028662 None:intergenic 35.0%
GGGTGCAAAACAAGGAAAAA+GGG + chr7_4:42024922-42024941 None:intergenic 40.0%
AGGGTGCAAAACAAGGAAAA+AGG + chr7_4:42024923-42024942 None:intergenic 40.0%
! TCTCTATGCCTTTAGGCTTT+TGG + chr7_4:42024971-42024990 None:intergenic 40.0%
AAGATTGGGACAGTAGCTAA+AGG + chr7_4:42025059-42025078 None:intergenic 40.0%
GGAGATAACGTTGTGAAGAT+TGG + chr7_4:42025074-42025093 None:intergenic 40.0%
!! GAACGTTGTGTTGGTTTAAG+AGG + chr7_4:42025137-42025156 None:intergenic 40.0%
ACACTAGAAGAACGTTGTGT+TGG + chr7_4:42025146-42025165 None:intergenic 40.0%
! TTGTTGTTGTTGTGGCATGT+TGG + chr7_4:42025392-42025411 None:intergenic 40.0%
! TGAGGTTGTTGTTGTTGTTG+TGG + chr7_4:42025400-42025419 None:intergenic 40.0%
! ACACCTTTTTCTGTGGAAGA+AGG + chr7_4:42025562-42025581 None:intergenic 40.0%
! TAGCAACATAGTGGAGTAGT+TGG + chr7_4:42025749-42025768 None:intergenic 40.0%
AGAAGAAGGTAGCAACATAG+TGG + chr7_4:42025758-42025777 None:intergenic 40.0%
!!! TGGTTTTGTTCCTCAACAAG+TGG + chr7_4:42025832-42025851 None:intergenic 40.0%
!! TTTCTGTTGCTGGTTCTGTT+GGG + chr7_4:42025910-42025929 None:intergenic 40.0%
!! ACAGTTACTGTTTCTGTTGC+TGG + chr7_4:42025920-42025939 None:intergenic 40.0%
GAGGTTTCATCCATCATAGA+AGG + chr7_4:42025988-42026007 None:intergenic 40.0%
AGAGCAAGGTTTGGATTACA+AGG + chr7_4:42026114-42026133 None:intergenic 40.0%
TCAAGAACAAGAGCAAGGTT+TGG + chr7_4:42026123-42026142 None:intergenic 40.0%
TTTCTCTCAGGAACAACACT+TGG + chr7_4:42026177-42026196 None:intergenic 40.0%
GAGGAACAATGTCATCAACA+CGG + chr7_4:42026284-42026303 None:intergenic 40.0%
!! TGTGTTGATTGTGGTTGTGA+AGG + chr7_4:42026408-42026427 None:intergenic 40.0%
TGATTATGTAGTGTGTGTGG+TGG + chr7_4:42026780-42026799 None:intergenic 40.0%
GCAAGGATATGAAAAAGACC+AGG + chr7_4:42026954-42026973 None:intergenic 40.0%
AATCCAGTGAGTCTCACATA+AGG + chr7_4:42026996-42027015 None:intergenic 40.0%
TATGTGAGACTCACTGGATT+AGG - chr7_4:42026996-42027015 Msa1154550:CDS 40.0%
AGTAGCTTCAAGTGTTTCCA+TGG + chr7_4:42027027-42027046 None:intergenic 40.0%
ATGGAAACACTTGAAGCTAC+TGG - chr7_4:42027026-42027045 Msa1154550:CDS 40.0%
GCAACAGGAAAGAACTCAAA+AGG + chr7_4:42027089-42027108 None:intergenic 40.0%
TTTCCTGTTGCTGAGAAAGT+TGG - chr7_4:42027098-42027117 Msa1154550:CDS 40.0%
TTTCCAACTTTCTCAGCAAC+AGG + chr7_4:42027104-42027123 None:intergenic 40.0%
ACCTAAAGTGGTAACAGTAG+TGG - chr7_4:42027829-42027848 Msa1154550:CDS 40.0%
TCCACTACTGTTACCACTTT+AGG + chr7_4:42027833-42027852 None:intergenic 40.0%
AGCAATGCAGGTTCATTCTT+GGG - chr7_4:42027863-42027882 Msa1154550:CDS 40.0%
TTCATTCTTGGGAAGGTTTG+TGG - chr7_4:42027874-42027893 Msa1154550:CDS 40.0%
GATTCTCTTGGTTCAAGCTA+TGG - chr7_4:42027926-42027945 Msa1154550:CDS 40.0%
ATTCGTAACGTTCTTGCAGT+TGG - chr7_4:42028001-42028020 Msa1154550:CDS 40.0%
TTTATCTCACCACTCCTTGA+TGG + chr7_4:42028031-42028050 None:intergenic 40.0%
AGAGAAAAGCTTCAACAGTG+TGG - chr7_4:42028064-42028083 Msa1154550:CDS 40.0%
!!! CTTCAACAGTGTGGTTTTAG+AGG - chr7_4:42028073-42028092 Msa1154550:CDS 40.0%
!! TTTAGAGGTATCTCTTTGGC+TGG - chr7_4:42028088-42028107 Msa1154550:CDS 40.0%
!! ACACAAGCTAGTCTTCTTCT+TGG - chr7_4:42028121-42028140 Msa1154550:CDS 40.0%
CCAAAGTATACCCTTCAGAA+GGG + chr7_4:42028153-42028172 None:intergenic 40.0%
ACCAAAGTATACCCTTCAGA+AGG + chr7_4:42028154-42028173 None:intergenic 40.0%
! TGAAGGGTATACTTTGGTTG+AGG - chr7_4:42028156-42028175 Msa1154550:CDS 40.0%
ACATTGTTGGAATGAAAGGG+AGG + chr7_4:42028244-42028263 None:intergenic 40.0%
CTGCATGACAAAGTTACTGT+AGG - chr7_4:42028327-42028346 Msa1154550:CDS 40.0%
AATAGATTCCCTGCAGTTAC+TGG - chr7_4:42028380-42028399 Msa1154550:CDS 40.0%
!! TTTCGGTAGTTGATGAAGGT+CGG - chr7_4:42028417-42028436 Msa1154550:CDS 40.0%
AAACCAAAAGGCCATCAACA+GGG + chr7_4:42028517-42028536 None:intergenic 40.0%
AAAACCAAAAGGCCATCAAC+AGG + chr7_4:42028518-42028537 None:intergenic 40.0%
ATAGGGATGCTACAAAGGAT+TGG + chr7_4:42028547-42028566 None:intergenic 40.0%
AAAGGATAGGGATGCTACAA+AGG + chr7_4:42028552-42028571 None:intergenic 40.0%
AGAAGAGAGGGGTGATAATA+TGG - chr7_4:42028679-42028698 Msa1154550:five_prime_UTR 40.0%
! GGAAAAAGGGAGTGTGTCAT+GGG + chr7_4:42024909-42024928 None:intergenic 45.0%
! AGGAAAAAGGGAGTGTGTCA+TGG + chr7_4:42024910-42024929 None:intergenic 45.0%
CTGATAAATCTCGCATGGGA+GGG + chr7_4:42024942-42024961 None:intergenic 45.0%
TCTGATAAATCTCGCATGGG+AGG + chr7_4:42024943-42024962 None:intergenic 45.0%
ACACGGTTCTCTATGCCTTT+AGG + chr7_4:42024978-42024997 None:intergenic 45.0%
! GCTGCTTGTGCTTTGTTCAA+TGG - chr7_4:42025277-42025296 Msa1154550:three_prime_UTR 45.0%
! TTGTTGTTGTGGCATGTTGG+TGG + chr7_4:42025389-42025408 None:intergenic 45.0%
AGTGGAGTAGTTGGTTGTGA+CGG + chr7_4:42025740-42025759 None:intergenic 45.0%
!!! CTGTTGGGTTGGTTTTGAGA+TGG + chr7_4:42025895-42025914 None:intergenic 45.0%
!! GTTTCTGTTGCTGGTTCTGT+TGG + chr7_4:42025911-42025930 None:intergenic 45.0%
AAACCTCAGCTGCAACAAAC+TGG - chr7_4:42026001-42026020 Msa1154550:intron 45.0%
!! AATCCAGTTTGTTGCAGCTG+AGG + chr7_4:42026007-42026026 None:intergenic 45.0%
GCTGCAACAAACTGGATTGA+TGG - chr7_4:42026009-42026028 Msa1154550:intron 45.0%
ACGGTTCATGAGTTTCACTG+AGG + chr7_4:42026265-42026284 None:intergenic 45.0%
ATTTGTGGCACACCCCAATT+TGG + chr7_4:42026354-42026373 None:intergenic 45.0%
ATTGCCAACTCAGCAGAAGT+TGG + chr7_4:42026504-42026523 None:intergenic 45.0%
! CTTTGTGCTGATGTACCGAA+AGG + chr7_4:42026684-42026703 None:intergenic 45.0%
ATGCAAGGTTTACAATGGCC+TGG - chr7_4:42026933-42026952 Msa1154550:CDS 45.0%
CATATCCTTGCTTCAAGACC+AGG - chr7_4:42026963-42026982 Msa1154550:CDS 45.0%
! CACTGGATTAGGTACTTCCA+TGG - chr7_4:42027007-42027026 Msa1154550:CDS 45.0%
! CAGAAGCTGTTGCTGTTCAT+TGG - chr7_4:42027156-42027175 Msa1154550:CDS 45.0%
ACACTTTGTGGCTCTTGCAA+AGG - chr7_4:42027219-42027238 Msa1154550:CDS 45.0%
TTTGTGGCTCTTGCAAAGGT+TGG - chr7_4:42027223-42027242 Msa1154550:CDS 45.0%
! ATGTAGGTTGGCACCTAAAG+TGG - chr7_4:42027817-42027836 Msa1154550:CDS 45.0%
GAACAAGACTTGAGCAATGC+AGG - chr7_4:42027851-42027870 Msa1154550:CDS 45.0%
GAGCAATGCAGGTTCATTCT+TGG - chr7_4:42027862-42027881 Msa1154550:CDS 45.0%
ATGCAGGTTCATTCTTGGGA+AGG - chr7_4:42027867-42027886 Msa1154550:CDS 45.0%
AGAGAGTGAAGAGAGACATG+TGG - chr7_4:42027952-42027971 Msa1154550:CDS 45.0%
TTGGCATGTTCCCTTCTGAA+GGG - chr7_4:42028140-42028159 Msa1154550:CDS 45.0%
! CCCTTCTGAAGGGTATACTT+TGG - chr7_4:42028150-42028169 Msa1154550:CDS 45.0%
GTTTGCTTACTGCTTCTGCT+TGG - chr7_4:42028215-42028234 Msa1154550:CDS 45.0%
CTACATGACCAGTAACTGCA+GGG + chr7_4:42028391-42028410 None:intergenic 45.0%
ACTACATGACCAGTAACTGC+AGG + chr7_4:42028392-42028411 None:intergenic 45.0%
ACTAGCATAGTCCCTGTTGA+TGG - chr7_4:42028503-42028522 Msa1154550:five_prime_UTR 45.0%
TCACTGAAGCGGTACACATT+TGG + chr7_4:42028632-42028651 None:intergenic 45.0%
GGGTGATAATATGGCTGAAG+AGG - chr7_4:42028688-42028707 Msa1154550:five_prime_UTR 45.0%
!!! AAAAAAAAATATAAAGTTTT+GGG + chr7_4:42027406-42027425 None:intergenic 5.0%
!!! TAAAAAAAAATATAAAGTTT+TGG + chr7_4:42027407-42027426 None:intergenic 5.0%
ACAACAACAACACTAGCCGC+AGG - chr7_4:42025586-42025605 Msa1154550:CDS 50.0%
TTGGTTGTGACGGTCACAGT+GGG + chr7_4:42025730-42025749 None:intergenic 50.0%
!! TGTTGCTGGTTCTGTTGGGT+TGG + chr7_4:42025906-42025925 None:intergenic 50.0%
!! AACTCAGCAGAAGTTGGTGG+TGG + chr7_4:42026498-42026517 None:intergenic 50.0%
ACCACCAACTTCTGCTGAGT+TGG - chr7_4:42026497-42026516 Msa1154550:CDS 50.0%
TCGCAGCTTTCAACGCCTTT+CGG - chr7_4:42026666-42026685 Msa1154550:CDS 50.0%
ATCCTTGCTTCAAGACCAGG+TGG - chr7_4:42026966-42026985 Msa1154550:CDS 50.0%
CCAGTGAGTCTCACATAAGG+AGG + chr7_4:42026993-42027012 None:intergenic 50.0%
CCTCCTTATGTGAGACTCAC+TGG - chr7_4:42026990-42027009 Msa1154550:CDS 50.0%
GAGTGAAGAGAGACATGTGG+TGG - chr7_4:42027955-42027974 Msa1154550:CDS 50.0%
CGTAACGTTCTTGCAGTTGG+TGG - chr7_4:42028004-42028023 Msa1154550:CDS 50.0%
!! TTGCAGTTGGTGGACCATCA+AGG - chr7_4:42028014-42028033 Msa1154550:CDS 50.0%
CTTGGCATGTTCCCTTCTGA+AGG - chr7_4:42028139-42028158 Msa1154550:CDS 50.0%
!! GGTAGTTGATGAAGGTCGGT+CGG - chr7_4:42028421-42028440 Msa1154550:CDS 50.0%
!!! AGTCCCTGTTGATGGCCTTT+TGG - chr7_4:42028511-42028530 Msa1154550:five_prime_UTR 50.0%
! GCATGGGAGGGTGCAAAACA+AGG + chr7_4:42024930-42024949 None:intergenic 55.0%
TGGTTGTGACGGTCACAGTG+GGG + chr7_4:42025729-42025748 None:intergenic 55.0%
GTTGGTTGTGACGGTCACAG+TGG + chr7_4:42025731-42025750 None:intergenic 55.0%
!! TCAGCAGAAGTTGGTGGTGG+TGG + chr7_4:42026495-42026514 None:intergenic 55.0%
GCCAACTCAGCAGAAGTTGG+TGG + chr7_4:42026501-42026520 None:intergenic 55.0%
!! GTCCACCTGGTCTTGAAGCA+AGG + chr7_4:42026971-42026990 None:intergenic 55.0%
CTCACATAAGGAGGTCCACC+TGG + chr7_4:42026984-42027003 None:intergenic 55.0%
! GTTGGTGGACCATCAAGGAG+TGG - chr7_4:42028019-42028038 Msa1154550:CDS 55.0%
!! GGTGGTGGTGGTGTTGTTGC+AGG + chr7_4:42026483-42026502 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 42024895 42028832 42024895 ID=Msa1154550;Name=Msa1154550
chr7_4 mRNA 42024895 42028832 42024895 ID=Msa1154550-mRNA-1;Parent=Msa1154550;Name=Msa1154550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=379|1|1|1|1|1|2|550|808
chr7_4 exon 42024895 42025904 42024895 ID=Msa1154550-mRNA-1:exon:10289;Parent=Msa1154550-mRNA-1
chr7_4 exon 42026487 42028832 42026487 ID=Msa1154550-mRNA-1:exon:10288;Parent=Msa1154550-mRNA-1
chr7_4 five_prime_UTR 42028454 42028832 42028454 ID=Msa1154550-mRNA-1:five_prime_utr;Parent=Msa1154550-mRNA-1
chr7_4 CDS 42026487 42028453 42026487 ID=Msa1154550-mRNA-1:cds;Parent=Msa1154550-mRNA-1
chr7_4 CDS 42025445 42025904 42025445 ID=Msa1154550-mRNA-1:cds;Parent=Msa1154550-mRNA-1
chr7_4 three_prime_UTR 42024895 42025444 42024895 ID=Msa1154550-mRNA-1:three_prime_utr;Parent=Msa1154550-mRNA-1
Gene Sequence

>Msa1154550

ATGGCTGCTTGTGCTTTGTTCAATGGTGCTACTACTGATGAAACCAACAACAATAGTGCTTCAAACTCCAGCAATATCAGTAGTGAAGATTTACACACTCTACACAACAACACCACCAACATGCCACAACAACAACAACAACCTCATTCTGAAAGAAAAGTGCTTAGAAAAAGAATGGCTTCTGAAATGGAACTTCAACTTCAAGTCCACAACAACAACAATAGATTTTCTCGTAGAAACAACAACAACAGCAGCAACAACATTTCCTCATTGAATTGTACTTTACCTTCTTCCACAGAAAAAGGTGTTACAACAACAACAACACTAGCCGCAGGTACAAATAATAATAATAATAATTTTCATTATAATACTAATAATATAAACAATAGTAATAATATTAGTCATCATAGTAACGTTGCTTTGTCACGAGATAACGTTGCTGTTCAAAATTACCCCACTGTGACCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCTTCCAACAATCTCAACAATTCCTCAAACTCAAACTACACTCATTTTCAACAACCACTTGTTGAGGAACAAAACCATGTTCCTAATATTTGTGGTTTTTCTGGTTTACCACTTTTTCCATCTCAAAACCAACCCAACAGAACCAGCAACAGAAACAGTAACTGTAACATAAGTTCTGGTACTAATATTGTTGATGTTGTTAACTCTTCACCTTCTATGATGGATGAAACCTCAGCTGCAACAAACTGGATTGATGGTATTTTGAAGGATCTTATTCATACTTCAAACAGTGTTTCCATTCCTCAACTCATCAACAATGTTAGAGAGATTATATATCCTTGTAATCCAAACCTTGCTCTTGTTCTTGAACATAGGTTACGTCTTCTTACAGAAACTGCTCCAAGTGTTGTTCCTGAGAGAAAAAGAAACAACACTGAACAACAAAGTGTTGCTAATGTTAATGTTTTACCTGCTTCTAATGTTAATTCCTCAGTGAAACTCATGAACCGTGTTGATGACATTGTTCCTCATTTTTCTGATTCATCAAGTCTTTTGAATCAAAATCAAAACATGTTTCCAAATTGGGGTGTGCCACAAATCAATAACAACAATAACCCTTTGGTTACTTTACCTTCACAACCACAATCAACACAACAAGATCAACATCAACAACATCAACATCAAGAGCATCAAGAAGATCTTGCACCTGCAACAACACCACCACCACCAACTTCTGCTGAGTTGGCAATAACAAGAAAGAAGAAAGAGGAGATTAAAGAACAAAAGAAGAAAGATGAAGAAGGTTTACACCTTCTAACATTACTTCTTCAATGTGCAGAAGCAGTATCAGCAGAGAATCTTGAACAAGCAAACAAGATGTTACTCGAAATTTCGCAGCTTTCAACGCCTTTCGGTACATCAGCACAAAGAGTAGCAGCTTATTTCTCAGAAGCAATTTCAGCAAGACTAGTGAGTTCATGTTTAGGAATCTATGCAACACTTCCACCACACACACTACATAATCAAAAAGTTGCTTCAGCTTTTCAAGTCTTCAATGGTATTAGTCCATTTGTGAAATTCTCTCATTTCACTGCTAACCAAGCTATACAAGAAGCTTTTGATAGAGAAGAAAGAGTTCATATCATAGATCTTGATATCATGCAAGGTTTACAATGGCCTGGTCTTTTTCATATCCTTGCTTCAAGACCAGGTGGACCTCCTTATGTGAGACTCACTGGATTAGGTACTTCCATGGAAACACTTGAAGCTACTGGTAAACGTTTGTCTGATTTTGCATCTAAACTTGGTCTTCCTTTTGAGTTCTTTCCTGTTGCTGAGAAAGTTGGAAACATTGATGTTGAGAAGCTTAATGTTAGTAAATCAGAAGCTGTTGCTGTTCATTGGTTGCAACATTCTCTATATGATGTTACTGGTTCAGATACAAACACTTTGTGGCTCTTGCAAAGGTTGGCACCTAAAGTGGTAACAGTAGTGGAACAAGACTTGAGCAATGCAGGTTCATTCTTGGGAAGGTTTGTGGAAGCAATACATTACTACTCAGCATTATTTGATTCTCTTGGTTCAAGCTATGGAGAAGAGAGTGAAGAGAGACATGTGGTGGAGCAGCAACTATTATCAAGAGAGATTCGTAACGTTCTTGCAGTTGGTGGACCATCAAGGAGTGGTGAGATAAAGTTTCATAATTGGAGAGAAAAGCTTCAACAGTGTGGTTTTAGAGGTATCTCTTTGGCTGGTAATGCTGCTACACAAGCTAGTCTTCTTCTTGGCATGTTCCCTTCTGAAGGGTATACTTTGGTTGAGGATAATGGTATCCTTAAACTTGGTTGGAAAGATCTTTGTTTGCTTACTGCTTCTGCTTGGAGACCTCCCTTTCATTCCAACAATGTCATACCACATCATAACTGA
Protein sequence

>Msa1154550

MAACALFNGATTDETNNNSASNSSNISSEDLHTLHNNTTNMPQQQQQPHSERKVLRKRMASEMELQLQVHNNNNRFSRRNNNNSSNNISSLNCTLPSSTEKGVTTTTTLAAGTNNNNNNFHYNTNNINNSNNISHHSNVALSRDNVAVQNYPTVTVTTNYSTMLLPSSSNNLNNSSNSNYTHFQQPLVEEQNHVPNICGFSGLPLFPSQNQPNRTSNRNSNCNISSGTNIVDVVNSSPSMMDETSAATNWIDGILKDLIHTSNSVSIPQLINNVREIIYPCNPNLALVLEHRLRLLTETAPSVVPERKRNNTEQQSVANVNVLPASNVNSSVKLMNRVDDIVPHFSDSSSLLNQNQNMFPNWGVPQINNNNNPLVTLPSQPQSTQQDQHQQHQHQEHQEDLAPATTPPPPTSAELAITRKKKEEIKEQKKKDEEGLHLLTLLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPPHTLHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMETLEATGKRLSDFASKLGLPFEFFPVAEKVGNIDVEKLNVSKSEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSNNVIPHHN*