Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675350 | KAA8516338.1 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 1.48e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675350 | sp|Q6VAF7|TBB5_GOSHI | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 1.23e-43 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675350 | A0A5K0XRQ8 | 97.101 | 69 | 2 | 0 | 13 | 81 | 1 | 69 | 6.59e-43 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa0675350 | 0.835777 | 1.376992e-56 | -8.615850e-47 |
| Msa0020540 | Msa0675350 | 0.802525 | 5.382812e-49 | -8.615850e-47 |
| Msa0025160 | Msa0675350 | 0.803752 | 2.999876e-49 | -8.615850e-47 |
| Msa0032980 | Msa0675350 | 0.812687 | 3.739649e-51 | -8.615850e-47 |
| Msa0039160 | Msa0675350 | 0.839341 | 1.678989e-57 | -8.615850e-47 |
| Msa0040640 | Msa0675350 | 0.823234 | 1.545501e-53 | -8.615850e-47 |
| Msa0050150 | Msa0675350 | 0.804761 | 1.849536e-49 | -8.615850e-47 |
| Msa0062340 | Msa0675350 | 0.814606 | 1.413887e-51 | -8.615850e-47 |
| Msa0067380 | Msa0675350 | 0.816173 | 6.337007e-52 | -8.615850e-47 |
| Msa0072520 | Msa0675350 | 0.843192 | 1.630210e-58 | -8.615850e-47 |
| Msa0084990 | Msa0675350 | 0.800994 | 1.109654e-48 | -8.615850e-47 |
| Msa0091350 | Msa0675350 | 0.808711 | 2.708635e-50 | -8.615850e-47 |
| Msa0607800 | Msa0675350 | 0.831849 | 1.322129e-55 | -8.615850e-47 |
| Msa0615630 | Msa0675350 | 0.829249 | 5.719842e-55 | -8.615850e-47 |
| Msa0620500 | Msa0675350 | 0.844418 | 7.653677e-59 | -8.615850e-47 |
| Msa0621710 | Msa0675350 | 0.816242 | 6.116107e-52 | -8.615850e-47 |
| Msa0625620 | Msa0675350 | 0.810232 | 1.276569e-50 | -8.615850e-47 |
| Msa0640800 | Msa0675350 | 0.810067 | 1.386061e-50 | -8.615850e-47 |
| Msa0645340 | Msa0675350 | 0.841909 | 3.569810e-58 | -8.615850e-47 |
| Msa0647050 | Msa0675350 | 0.802148 | 6.436860e-49 | -8.615850e-47 |
| Msa0647440 | Msa0675350 | 0.808387 | 3.176144e-50 | -8.615850e-47 |
| Msa0648040 | Msa0675350 | 0.819524 | 1.109979e-52 | -8.615850e-47 |
| Msa0648760 | Msa0675350 | 0.825670 | 4.130381e-54 | -8.615850e-47 |
| Msa0654740 | Msa0675350 | 0.812852 | 3.442000e-51 | -8.615850e-47 |
| Msa0657210 | Msa0675350 | 0.807606 | 4.657152e-50 | -8.615850e-47 |
| Msa0668900 | Msa0675350 | 0.816937 | 4.273876e-52 | -8.615850e-47 |
| Msa0675350 | Msa0687090 | 0.841822 | 3.763825e-58 | -8.615850e-47 |
| Msa0675350 | Msa0688380 | 0.810324 | 1.220095e-50 | -8.615850e-47 |
| Msa0675350 | Msa0688620 | 0.802145 | 6.444721e-49 | -8.615850e-47 |
| Msa0675350 | Msa0690320 | 0.803813 | 2.914308e-49 | -8.615850e-47 |
| Msa0675350 | Msa0690740 | 0.823699 | 1.203471e-53 | -8.615850e-47 |
| Msa0675350 | Msa0698730 | 0.807939 | 3.955966e-50 | -8.615850e-47 |
| Msa0675350 | Msa0701250 | 0.813074 | 3.077255e-51 | -8.615850e-47 |
| Msa0675350 | Msa0707260 | 0.803545 | 3.312140e-49 | -8.615850e-47 |
| Msa0675350 | Msa0717900 | 0.814691 | 1.354573e-51 | -8.615850e-47 |
| Msa0675350 | Msa0720280 | 0.804762 | 1.848941e-49 | -8.615850e-47 |
| Msa0675350 | Msa0740710 | 0.812439 | 4.238062e-51 | -8.615850e-47 |
| Msa0675350 | Msa0743440 | 0.823119 | 1.644403e-53 | -8.615850e-47 |
| Msa0675350 | Msa0749190 | 0.800496 | 1.402827e-48 | -8.615850e-47 |
| Msa0675350 | Msa0750520 | 0.805178 | 1.512902e-49 | -8.615850e-47 |
| Msa0675350 | Msa0780910 | 0.821291 | 4.366485e-53 | -8.615850e-47 |
| Msa0675350 | Msa0799050 | 0.818111 | 2.324695e-52 | -8.615850e-47 |
| Msa0675350 | Msa0800660 | 0.813397 | 2.612653e-51 | -8.615850e-47 |
| Msa0675350 | Msa0803140 | 0.804819 | 1.798750e-49 | -8.615850e-47 |
| Msa0675350 | Msa0816080 | 0.807663 | 4.527471e-50 | -8.615850e-47 |
| Msa0675350 | Msa0818130 | 0.802747 | 4.844196e-49 | -8.615850e-47 |
| Msa0675350 | Msa0821160 | 0.809347 | 1.978980e-50 | -8.615850e-47 |
| Msa0675350 | Msa0879920 | 0.810650 | 1.037277e-50 | -8.615850e-47 |
| Msa0675350 | Msa0900090 | 0.817016 | 4.103038e-52 | -8.615850e-47 |
| Msa0675350 | Msa0909760 | 0.800524 | 1.384272e-48 | -8.615850e-47 |
| Msa0675350 | Msa0924430 | 0.805250 | 1.461927e-49 | -8.615850e-47 |
| Msa0675350 | Msa0931590 | 0.803806 | 2.923876e-49 | -8.615850e-47 |
| Msa0675350 | Msa1060900 | 0.814522 | 1.476208e-51 | -8.615850e-47 |
| Msa0675350 | Msa1071410 | 0.802744 | 4.851983e-49 | -8.615850e-47 |
| Msa0675350 | Msa1076020 | 0.806722 | 7.165500e-50 | -8.615850e-47 |
| Msa0675350 | Msa1078880 | 0.832621 | 8.514630e-56 | -8.615850e-47 |
| Msa0675350 | Msa1078970 | 0.833870 | 4.160316e-56 | -8.615850e-47 |
| Msa0675350 | Msa1082380 | 0.841732 | 3.974271e-58 | -8.615850e-47 |
| Msa0675350 | Msa1106220 | 0.812534 | 4.039509e-51 | -8.615850e-47 |
| Msa0675350 | Msa1123200 | 0.803493 | 3.395293e-49 | -8.615850e-47 |
| Msa0675350 | Msa1127280 | 0.848194 | 7.159604e-60 | -8.615850e-47 |
| Msa0675350 | Msa1132530 | 0.800242 | 1.579588e-48 | -8.615850e-47 |
| Msa0675350 | Msa1139050 | 0.816022 | 6.849140e-52 | -8.615850e-47 |
| Msa0675350 | Msa1148630 | 0.803389 | 3.567662e-49 | -8.615850e-47 |
| Msa0675350 | Msa1154550 | 0.834211 | 3.416245e-56 | -8.615850e-47 |
| Msa0675350 | Msa1159590 | 0.800801 | 1.215540e-48 | -8.615850e-47 |
| Msa0675350 | Msa1163180 | 0.812015 | 5.243741e-51 | -8.615850e-47 |
| Msa0675350 | Msa1165480 | 0.849512 | 3.082909e-60 | -8.615850e-47 |
| Msa0675350 | Msa1169190 | 0.834037 | 3.777512e-56 | -8.615850e-47 |
| Msa0675350 | Msa1190390 | 0.800250 | 1.574012e-48 | -8.615850e-47 |
| Msa0675350 | Msa1213830 | 0.806921 | 6.502905e-50 | -8.615850e-47 |
| Msa0675350 | Msa1215980 | 0.844036 | 9.690899e-59 | -8.615850e-47 |
| Msa0675350 | Msa1217230 | 0.805508 | 1.290653e-49 | -8.615850e-47 |
| Msa0675350 | Msa1252790 | 0.810796 | 9.647588e-51 | -8.615850e-47 |
| Msa0675350 | Msa1254540 | 0.826908 | 2.094936e-54 | -8.615850e-47 |
| Msa0675350 | Msa1263740 | 0.825561 | 4.383824e-54 | -8.615850e-47 |
| Msa0675350 | Msa1263780 | 0.826375 | 2.807813e-54 | -8.615850e-47 |
| Msa0675350 | Msa1267930 | 0.811777 | 5.907334e-51 | -8.615850e-47 |
| Msa0675350 | Msa1279120 | 0.802903 | 4.499060e-49 | -8.615850e-47 |
| Msa0675350 | Msa1294280 | 0.808391 | 3.169996e-50 | -8.615850e-47 |
| Msa0675350 | Msa1294460 | 0.804639 | 1.961605e-49 | -8.615850e-47 |
| Msa0675350 | Msa1294790 | 0.808929 | 2.431869e-50 | -8.615850e-47 |
| Msa0675350 | Msa1301820 | 0.805741 | 1.153201e-49 | -8.615850e-47 |
| Msa0675350 | Msa1306570 | 0.801350 | 9.383470e-49 | -8.615850e-47 |
| Msa0675350 | Msa1321530 | 0.810716 | 1.003685e-50 | -8.615850e-47 |
| Msa0675350 | Msa1332950 | 0.854612 | 1.096129e-61 | -8.615850e-47 |
| Msa0675350 | Msa1342810 | 0.870425 | 1.473825e-66 | -8.615850e-47 |
| Msa0675350 | Msa1361930 | 0.842287 | 2.835682e-58 | -8.615850e-47 |
| Msa0675350 | Msa1375350 | 0.803758 | 2.991514e-49 | -8.615850e-47 |
| Msa0675350 | Msa1381470 | 0.807430 | 5.075507e-50 | -8.615850e-47 |
| Msa0675350 | Msa1381800 | 0.801514 | 8.685208e-49 | -8.615850e-47 |
| Msa0675350 | Msa1387500 | 0.828943 | 6.785509e-55 | -8.615850e-47 |
| Msa0675350 | Msa1393560 | 0.815597 | 8.520114e-52 | -8.615850e-47 |
| Msa0675350 | Msa1406720 | 0.829829 | 4.134214e-55 | -8.615850e-47 |
| Msa0675350 | Msa1409410 | 0.801268 | 9.757218e-49 | -8.615850e-47 |
| Msa0675350 | Msa1428000 | 0.961696 | 5.295578e-120 | -8.615850e-47 |
| Msa0675350 | Msa1447170 | 0.806953 | 6.402201e-50 | -8.615850e-47 |
| Msa0675350 | Msa1457840 | 0.839464 | 1.560092e-57 | -8.615850e-47 |
| Msa0120790 | Msa0675350 | 0.820110 | 8.154860e-53 | -8.615850e-47 |
| Msa0127340 | Msa0675350 | 0.800289 | 1.545254e-48 | -8.615850e-47 |
| Msa0133620 | Msa0675350 | 0.845841 | 3.157110e-59 | -8.615850e-47 |
| Msa0140130 | Msa0675350 | 0.811719 | 6.083164e-51 | -8.615850e-47 |
| Msa0156050 | Msa0675350 | 0.806528 | 7.873455e-50 | -8.615850e-47 |
| Msa0156090 | Msa0675350 | 0.808395 | 3.163711e-50 | -8.615850e-47 |
| Msa0158900 | Msa0675350 | 0.801692 | 7.987766e-49 | -8.615850e-47 |
| Msa0159590 | Msa0675350 | 0.807705 | 4.436739e-50 | -8.615850e-47 |
| Msa0165830 | Msa0675350 | 0.808923 | 2.439389e-50 | -8.615850e-47 |
| Msa0168050 | Msa0675350 | 0.800244 | 1.578139e-48 | -8.615850e-47 |
| Msa0170070 | Msa0675350 | 0.839382 | 1.638546e-57 | -8.615850e-47 |
| Msa0373170 | Msa0675350 | 0.806499 | 7.986325e-50 | -8.615850e-47 |
| Msa0415450 | Msa0675350 | 0.815682 | 8.156482e-52 | -8.615850e-47 |
| Msa0415820 | Msa0675350 | 0.802527 | 5.377673e-49 | -8.615850e-47 |
| Msa0416160 | Msa0675350 | 0.812507 | 4.094910e-51 | -8.615850e-47 |
| Msa0421750 | Msa0675350 | 0.803242 | 3.827300e-49 | -8.615850e-47 |
| Msa0433760 | Msa0675350 | 0.808548 | 2.934043e-50 | -8.615850e-47 |
| Msa0460070 | Msa0675350 | 0.810081 | 1.375929e-50 | -8.615850e-47 |
| Msa0466520 | Msa0675350 | 0.832226 | 1.066467e-55 | -8.615850e-47 |
| Msa0467690 | Msa0675350 | 0.816021 | 6.855501e-52 | -8.615850e-47 |
| Msa0281540 | Msa0675350 | 0.812015 | 5.243445e-51 | -8.615850e-47 |
| Msa0320580 | Msa0675350 | 0.808863 | 2.512793e-50 | -8.615850e-47 |
| Msa0344110 | Msa0675350 | 0.809540 | 1.799040e-50 | -8.615850e-47 |
| Msa0485980 | Msa0675350 | 0.803537 | 3.325019e-49 | -8.615850e-47 |
| Msa0506880 | Msa0675350 | 0.808396 | 3.161301e-50 | -8.615850e-47 |
| Msa0507920 | Msa0675350 | 0.800625 | 1.319824e-48 | -8.615850e-47 |
| Msa0514020 | Msa0675350 | 0.805172 | 1.517527e-49 | -8.615850e-47 |
| Msa0520870 | Msa0675350 | 0.804340 | 2.263905e-49 | -8.615850e-47 |
| Msa0521680 | Msa0675350 | 0.822096 | 2.843885e-53 | -8.615850e-47 |
| Msa0527850 | Msa0675350 | 0.829310 | 5.530826e-55 | -8.615850e-47 |
| Msa0541740 | Msa0675350 | 0.812369 | 4.389838e-51 | -8.615850e-47 |
| Msa0544410 | Msa0675350 | 0.804133 | 2.500585e-49 | -8.615850e-47 |
| Msa0550590 | Msa0675350 | 0.812518 | 4.072855e-51 | -8.615850e-47 |
| Msa0554300 | Msa0675350 | 0.804792 | 1.821952e-49 | -8.615850e-47 |
| Msa0561560 | Msa0675350 | 0.845271 | 4.507707e-59 | -8.615850e-47 |
| Msa0564980 | Msa0675350 | 0.808368 | 3.205350e-50 | -8.615850e-47 |
| Msa0572830 | Msa0675350 | 0.809801 | 1.581049e-50 | -8.615850e-47 |
| Msa0575710 | Msa0675350 | 0.804354 | 2.248625e-49 | -8.615850e-47 |
| Msa0582460 | Msa0675350 | 0.814568 | 1.442125e-51 | -8.615850e-47 |
| Msa0586200 | Msa0675350 | 0.823134 | 1.631532e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675350 | MtrunA17_Chr4g0051631 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 9.00e-45 | 149 |
| Msa0675350 | MtrunA17_Chr2g0292921 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 1.22e-44 | 148 |
| Msa0675350 | MtrunA17_Chr4g0008401 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 1.30e-44 | 148 |
| Msa0675350 | MtrunA17_Chr8g0393021 | 97.101 | 69 | 2 | 0 | 13 | 81 | 134 | 202 | 1.36e-44 | 148 |
| Msa0675350 | MtrunA17_Chr1g0203181 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 1.40e-44 | 148 |
| Msa0675350 | MtrunA17_Chr4g0008361 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 1.82e-44 | 148 |
| Msa0675350 | MtrunA17_Chr3g0142731 | 97.101 | 69 | 2 | 0 | 13 | 81 | 135 | 203 | 5.33e-43 | 144 |
| Msa0675350 | MtrunA17_Chr7g0255791 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 6.02e-43 | 144 |
| Msa0675350 | MtrunA17_Chr4g0007371 | 93.056 | 72 | 5 | 0 | 10 | 81 | 132 | 203 | 2.14e-31 | 113 |
| Msa0675350 | MtrunA17_Chr8g0386781 | 95.652 | 69 | 3 | 0 | 13 | 81 | 133 | 201 | 3.01e-31 | 113 |
| Msa0675350 | MtrunA17_Chr7g0275431 | 46.970 | 66 | 34 | 1 | 13 | 77 | 135 | 200 | 1.73e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675350 | AT1G20010.1 | 97.101 | 69 | 2 | 0 | 13 | 81 | 134 | 202 | 1.87e-44 | 148 |
| Msa0675350 | AT5G23860.2 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 2.36e-44 | 148 |
| Msa0675350 | AT5G23860.1 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 2.36e-44 | 148 |
| Msa0675350 | AT1G75780.1 | 97.101 | 69 | 2 | 0 | 13 | 81 | 134 | 202 | 6.38e-43 | 144 |
| Msa0675350 | AT5G62690.1 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 8.27e-43 | 144 |
| Msa0675350 | AT5G62700.1 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 8.27e-43 | 144 |
| Msa0675350 | AT5G12250.1 | 97.101 | 69 | 2 | 0 | 13 | 81 | 133 | 201 | 8.76e-43 | 144 |
| Msa0675350 | AT4G20890.1 | 95.652 | 69 | 3 | 0 | 13 | 81 | 133 | 201 | 3.60e-32 | 115 |
| Msa0675350 | AT5G44340.1 | 95.652 | 69 | 3 | 0 | 13 | 81 | 133 | 201 | 3.64e-32 | 115 |
| Msa0675350 | AT2G29550.1 | 95.652 | 69 | 3 | 0 | 13 | 81 | 133 | 201 | 6.21e-32 | 115 |
| Msa0675350 | AT5G05620.1 | 46.970 | 66 | 34 | 1 | 13 | 77 | 135 | 200 | 2.60e-16 | 72.0 |
| Msa0675350 | AT3G61650.1 | 46.970 | 66 | 34 | 1 | 13 | 77 | 135 | 200 | 2.65e-16 | 72.0 |
Find 146 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATATTATTCATGTTAA+TGG | 0.124820 | 4_4:+23981257 | Msa0675350:three_prime_UTR |
| CCCTCGTTTGCATTTCTTCA+TGG | 0.183235 | 4_4:+23980486 | Msa0675350:three_prime_UTR |
| GCACACAACTTCCCAGAATT+TGG | 0.196817 | 4_4:-23978549 | None:intergenic |
| GACCTTTCGCCCAGTGTTTC+CGG | 0.207357 | 4_4:-23978786 | None:intergenic |
| TTGTTTGCTATTGTAGTTTC+AGG | 0.209930 | 4_4:+23981186 | Msa0675350:three_prime_UTR |
| ACCAAATCGGAGCCAAATTC+TGG | 0.224594 | 4_4:+23978537 | Msa0675350:five_prime_UTR |
| GCTTTCTTGCATTGGTATAC+TGG | 0.248415 | 4_4:+23980883 | Msa0675350:three_prime_UTR |
| CGGCCTGATAACTTCGTCTT+TGG | 0.273503 | 4_4:+23978752 | Msa0675350:five_prime_UTR |
| CTTGGTGGTGGTACTGGTTC+TGG | 0.275474 | 4_4:+23979992 | Msa0675350:CDS |
| TGGTAACTCCACATCTATTC+AGG | 0.284386 | 4_4:+23980810 | Msa0675350:three_prime_UTR |
| CATGAATAATATGGAAATAT+AGG | 0.286290 | 4_4:-23981250 | None:intergenic |
| AACCATTAACATGAATAATA+TGG | 0.293233 | 4_4:-23981259 | None:intergenic |
| GAACTCAGATCTTCGCAAAT+TGG | 0.295990 | 4_4:+23980444 | Msa0675350:three_prime_UTR |
| CCCGCCAACCGGTCTTAAAA+TGG | 0.301301 | 4_4:+23980774 | Msa0675350:three_prime_UTR |
| AGATGAGGAGGAAGAAGTTC+AGG | 0.309205 | 4_4:+23981020 | Msa0675350:three_prime_UTR |
| CACTCCCTTGGTGGTGGTAC+TGG | 0.316198 | 4_4:+23979986 | Msa0675350:CDS |
| CATCTATTCAGGAGATGTTT+AGG | 0.317382 | 4_4:+23980821 | Msa0675350:three_prime_UTR |
| CAGTAGCATCTTGGTATTGC+TGG | 0.336251 | 4_4:-23980972 | None:intergenic |
| GGATCTGGAGCCAGGGACTA+TGG | 0.340774 | 4_4:+23978694 | Msa0675350:five_prime_UTR |
| GACAGTGGATTTCACATTGT+TGG | 0.341115 | 4_4:-23980743 | None:intergenic |
| TCTTCGAATCCCACATCTGC+TGG | 0.346684 | 4_4:-23980576 | None:intergenic |
| GTTCTCATGGATCTGGAGCC+AGG | 0.354959 | 4_4:+23978686 | Msa0675350:five_prime_UTR |
| CCCAGAATTTGGCTCCGATT+TGG | 0.356984 | 4_4:-23978538 | None:intergenic |
| GGTGGTACTGGTTCTGGAAT+GGG | 0.369152 | 4_4:+23979998 | Msa0675350:CDS |
| TCATTGTGGCCGAAATTAGA+TGG | 0.369833 | 4_4:-23980384 | None:intergenic |
| TGAGTTTGAAGAACGAGTTT+TGG | 0.379865 | 4_4:-23978466 | None:intergenic |
| GAGAATTGTGATTGTCTTCA+AGG | 0.384367 | 4_4:+23978868 | Msa0675350:CDS |
| AGATCTGAACCATCTAATTT+CGG | 0.387444 | 4_4:+23980375 | Msa0675350:exon |
| TCATTTCTCATAGAATTCTC+TGG | 0.389916 | 4_4:+23978375 | Msa0675350:five_prime_UTR |
| TGTCCAAAGACGAAGTTATC+AGG | 0.391751 | 4_4:-23978755 | None:intergenic |
| ACAGTGGATTTCACATTGTT+GGG | 0.397830 | 4_4:-23980742 | None:intergenic |
| TCTTAATCTTACAACTGAAC+TGG | 0.407608 | 4_4:+23981331 | Msa0675350:three_prime_UTR |
| TCGCCCAGTGTTTCCGGCAC+CGG | 0.408875 | 4_4:-23978780 | None:intergenic |
| GGTTCCCGCATTGTCCTCCT+TGG | 0.410215 | 4_4:-23978517 | None:intergenic |
| TAGAGCTGTTCTCATGGATC+TGG | 0.416476 | 4_4:+23978679 | Msa0675350:five_prime_UTR |
| CAGGTTTGCCACTCCCTTGG+TGG | 0.418895 | 4_4:+23979977 | Msa0675350:intron |
| CGTTTGCATTTCTTCATGGT+GGG | 0.424005 | 4_4:+23980490 | Msa0675350:three_prime_UTR |
| CAGTCCGGTGCCGGAAACAC+TGG | 0.424061 | 4_4:+23978776 | Msa0675350:five_prime_UTR |
| TTTCAGGTTTGCCACTCCCT+TGG | 0.428262 | 4_4:+23979974 | Msa0675350:intron |
| GTTGTTCCCTTGGTACCTTC+CGG | 0.430541 | 4_4:-23978594 | None:intergenic |
| GTTGAAGATCGTTGTTCCCT+TGG | 0.430648 | 4_4:-23978604 | None:intergenic |
| TGGTGGTACTGGTTCTGGAA+TGG | 0.433580 | 4_4:+23979997 | Msa0675350:CDS |
| ATATTATTCATGTTAATGGT+TGG | 0.434131 | 4_4:+23981261 | Msa0675350:three_prime_UTR |
| AAAGTAAGCATCATTCGATC+AGG | 0.435587 | 4_4:-23980055 | None:intergenic |
| GTAGAAAAGCTTTCTTGCAT+TGG | 0.442451 | 4_4:+23980875 | Msa0675350:three_prime_UTR |
| GTCTGTGATATCCCGCCAAC+CGG | 0.443322 | 4_4:+23980763 | Msa0675350:three_prime_UTR |
| CTCGTGGTTCACAGCAGTAC+AGG | 0.444979 | 4_4:+23980530 | Msa0675350:three_prime_UTR |
| ATTCGGTGCTTGATGTTGTT+AGG | 0.449556 | 4_4:+23978836 | Msa0675350:exon |
| ACTTTATAGCGGGATGTAAC+GGG | 0.452762 | 4_4:-23978323 | None:intergenic |
| GACTTTATAGCGGGATGTAA+CGG | 0.454349 | 4_4:-23978324 | None:intergenic |
| GTCTTTGGACAGTCCGGTGC+CGG | 0.454398 | 4_4:+23978767 | Msa0675350:five_prime_UTR |
| ACATGTTGTCTTCGATTCCC+TGG | 0.455659 | 4_4:+23980415 | Msa0675350:three_prime_UTR |
| AACTTCGTCTTTGGACAGTC+CGG | 0.467613 | 4_4:+23978761 | Msa0675350:five_prime_UTR |
| CACATCTGCTGGGTCAGCTC+AGG | 0.473481 | 4_4:-23980565 | None:intergenic |
| CTCCGTGTTCCCATCTCCTA+AGG | 0.475795 | 4_4:+23980078 | Msa0675350:CDS |
| CTTCATCTGCAGTAGCATCT+TGG | 0.477927 | 4_4:-23980981 | None:intergenic |
| CGTTCCTAGAGCTGTTCTCA+TGG | 0.485327 | 4_4:+23978673 | Msa0675350:five_prime_UTR |
| CCAAATCGGAGCCAAATTCT+GGG | 0.486989 | 4_4:+23978538 | Msa0675350:five_prime_UTR |
| CATCTGCTCATCAACCTCCT+TGG | 0.489308 | 4_4:-23980674 | None:intergenic |
| TGGAGAGGGTATGGATGAGA+TGG | 0.489491 | 4_4:+23980903 | Msa0675350:three_prime_UTR |
| TTGGTATACTGGAGAGGGTA+TGG | 0.494465 | 4_4:+23980894 | Msa0675350:three_prime_UTR |
| TCTCTCTCTCGAACTCGTTA+CGG | 0.497184 | 4_4:+23978423 | Msa0675350:five_prime_UTR |
| ACTATGGACAGCGTCAGATC+TGG | 0.497511 | 4_4:+23978710 | Msa0675350:five_prime_UTR |
| GTTTGCCACTCCCTTGGTGG+TGG | 0.498542 | 4_4:+23979980 | Msa0675350:CDS |
| TTCTCATGGATCTGGAGCCA+GGG | 0.504140 | 4_4:+23978687 | Msa0675350:five_prime_UTR |
| GTGTCAGATACCTTAGGAGA+TGG | 0.506140 | 4_4:-23980088 | None:intergenic |
| GAAGTTGTGTGCGCTGAGCA+CGG | 0.506720 | 4_4:+23978560 | Msa0675350:five_prime_UTR |
| GGACAATGCGGGAACCAAAT+CGG | 0.507915 | 4_4:+23978524 | Msa0675350:five_prime_UTR |
| CTGAGCTGACCCAGCAGATG+TGG | 0.508297 | 4_4:+23980566 | Msa0675350:three_prime_UTR |
| ACAGAGAGTGTAGCGTTGTA+AGG | 0.511785 | 4_4:-23980121 | None:intergenic |
| ACAGTAGTATTGTGATGTGA+AGG | 0.515826 | 4_4:+23981057 | Msa0675350:three_prime_UTR |
| AGGAGCTGAGTTGATTGATT+CGG | 0.521449 | 4_4:+23978819 | Msa0675350:five_prime_UTR |
| ATTCATCATACTTTGTTGAG+TGG | 0.522858 | 4_4:+23980716 | Msa0675350:three_prime_UTR |
| GTCAAATAACGACCGTGGCG+AGG | 0.525061 | 4_4:-23980619 | None:intergenic |
| TGAGGAGGAAGAAGTTCAGG+AGG | 0.525475 | 4_4:+23981023 | Msa0675350:three_prime_UTR |
| TTGCATTGGTATACTGGAGA+GGG | 0.526307 | 4_4:+23980889 | Msa0675350:three_prime_UTR |
| GGGGTATGACTATGAAGATG+AGG | 0.526329 | 4_4:+23981005 | Msa0675350:three_prime_UTR |
| GGCCGGAAAATCTGACCGTA+TGG | 0.526703 | 4_4:-23978734 | None:intergenic |
| CATCAGCATTCTCAACAAGT+TGG | 0.528768 | 4_4:-23980147 | None:intergenic |
| AGATCTGAGTTCAATTGACC+AGG | 0.531971 | 4_4:-23980433 | None:intergenic |
| CTTCGAATCCCACATCTGCT+GGG | 0.532809 | 4_4:-23980575 | None:intergenic |
| ACAACAGTGTCAGATACCTT+AGG | 0.533881 | 4_4:-23980094 | None:intergenic |
| TCGTTTGCATTTCTTCATGG+TGG | 0.534932 | 4_4:+23980489 | Msa0675350:three_prime_UTR |
| AAGAAATGCAAACGAGGGAA+AGG | 0.537226 | 4_4:-23980481 | None:intergenic |
| GAAGAAAGTGACTTTATAGC+GGG | 0.540763 | 4_4:-23978333 | None:intergenic |
| GGTGCTTGATGTTGTTAGGA+AGG | 0.544190 | 4_4:+23978840 | Msa0675350:exon |
| TGCCGGAAACACTGGGCGAA+AGG | 0.546316 | 4_4:+23978784 | Msa0675350:five_prime_UTR |
| AAGTTGTGTGCGCTGAGCAC+GGG | 0.549539 | 4_4:+23978561 | Msa0675350:five_prime_UTR |
| TACTACAACGAAGCGAGTTG+TGG | 0.552610 | 4_4:+23978644 | Msa0675350:five_prime_UTR |
| GAGGGTGAGTGAGCAATTCA+CGG | 0.553083 | 4_4:+23980843 | Msa0675350:three_prime_UTR |
| AGCGTCAGATCTGGTCCATA+CGG | 0.561086 | 4_4:+23978719 | Msa0675350:five_prime_UTR |
| AGATGCTACTGCAGATGAAG+AGG | 0.562679 | 4_4:+23980984 | Msa0675350:three_prime_UTR |
| ACATCCAAGGAGGACAATGC+GGG | 0.563147 | 4_4:+23978513 | Msa0675350:five_prime_UTR |
| CTTGCATTGGTATACTGGAG+AGG | 0.565550 | 4_4:+23980888 | Msa0675350:three_prime_UTR |
| CTAATTTCGGCCACAATGAG+TGG | 0.567054 | 4_4:+23980388 | Msa0675350:three_prime_UTR |
| AGATCCATGAGAACAGCTCT+AGG | 0.569536 | 4_4:-23978677 | None:intergenic |
| AGTCCGGTGCCGGAAACACT+GGG | 0.570300 | 4_4:+23978777 | Msa0675350:five_prime_UTR |
| CTATTCAGGAGATGTTTAGG+AGG | 0.571191 | 4_4:+23980824 | Msa0675350:three_prime_UTR |
| CTGACGCTGTCCATAGTCCC+TGG | 0.571304 | 4_4:-23978704 | None:intergenic |
| GTATGACTATGAAGATGAGG+AGG | 0.571612 | 4_4:+23981008 | Msa0675350:three_prime_UTR |
| CAGCATTCTCAACAAGTTGG+TGG | 0.573199 | 4_4:-23980144 | None:intergenic |
| TTTGCCCCACTCACTTCTCG+TGG | 0.577800 | 4_4:+23980514 | Msa0675350:three_prime_UTR |
| TCGTGGTTCACAGCAGTACA+GGG | 0.585028 | 4_4:+23980531 | Msa0675350:three_prime_UTR |
| GAGCACGGGATCGACTCCAC+CGG | 0.585627 | 4_4:+23978575 | Msa0675350:five_prime_UTR |
| CAGTAGTATTGTGATGTGAA+GGG | 0.586251 | 4_4:+23981058 | Msa0675350:three_prime_UTR |
| GCTCATCTTACCACGGAACA+TGG | 0.591088 | 4_4:-23980650 | None:intergenic |
| CGTGAGATTCTTCACATCCA+AGG | 0.593333 | 4_4:+23978500 | Msa0675350:five_prime_UTR |
| GATGCTACTGCAGATGAAGA+GGG | 0.594540 | 4_4:+23980985 | Msa0675350:three_prime_UTR |
| CAGTACCACCACCAAGGGAG+TGG | 0.594965 | 4_4:-23979985 | None:intergenic |
| GACTCCACCGGAAGGTACCA+AGG | 0.596275 | 4_4:+23978587 | Msa0675350:five_prime_UTR |
| TGCGCTGCTGATCCTCGCCA+CGG | 0.597098 | 4_4:+23980607 | Msa0675350:three_prime_UTR |
| TACCTTAGGAGATGGGAACA+CGG | 0.597343 | 4_4:-23980080 | None:intergenic |
| AAACATCTCCTGAATAGATG+TGG | 0.598080 | 4_4:-23980818 | None:intergenic |
| ACAGCATCTGCCATGTTCCG+TGG | 0.598969 | 4_4:+23980640 | Msa0675350:three_prime_UTR |
| TGTCAGATACCTTAGGAGAT+GGG | 0.602090 | 4_4:-23980087 | None:intergenic |
| CAAAGACGAAGTTATCAGGC+CGG | 0.603665 | 4_4:-23978751 | None:intergenic |
| ACATGTAACACCACTCATTG+TGG | 0.605465 | 4_4:-23980398 | None:intergenic |
| GTTCCCTTGGTACCTTCCGG+TGG | 0.611432 | 4_4:-23978591 | None:intergenic |
| AGAACCAGTACCACCACCAA+GGG | 0.618252 | 4_4:-23979990 | None:intergenic |
| TATTCAGGAGATGTTTAGGA+GGG | 0.623258 | 4_4:+23980825 | Msa0675350:three_prime_UTR |
| CACATCCAAGGAGGACAATG+CGG | 0.623605 | 4_4:+23978512 | Msa0675350:five_prime_UTR |
| TGAGCTGACCCAGCAGATGT+GGG | 0.624406 | 4_4:+23980567 | Msa0675350:three_prime_UTR |
| AAGTAAGCATCATTCGATCA+GGG | 0.636592 | 4_4:-23980054 | None:intergenic |
| ACCATGAAGAAATGCAAACG+AGG | 0.637063 | 4_4:-23980487 | None:intergenic |
| TGAGAATGCTGATGAATGCA+TGG | 0.647401 | 4_4:+23980156 | Msa0675350:CDS |
| AGAAGAAAGTGACTTTATAG+CGG | 0.648023 | 4_4:-23978334 | None:intergenic |
| GCTTGATGTTGTTAGGAAGG+AGG | 0.649257 | 4_4:+23978843 | Msa0675350:exon |
| GCGAAAGGTCACTACACTGA+AGG | 0.656934 | 4_4:+23978799 | Msa0675350:five_prime_UTR |
| GTGAACCACGAGAAGTGAGT+GGG | 0.660953 | 4_4:-23980519 | None:intergenic |
| TGGCGGGATATCACAGACAG+TGG | 0.662431 | 4_4:-23980758 | None:intergenic |
| CCATGAAGAAATGCAAACGA+GGG | 0.665875 | 4_4:-23980486 | None:intergenic |
| ACGGGATCGACTCCACCGGA+AGG | 0.666784 | 4_4:+23978579 | Msa0675350:five_prime_UTR |
| TTTGATTTCTAAAATCAGGG+AGG | 0.671547 | 4_4:+23980027 | Msa0675350:CDS |
| CAGAACCAGTACCACCACCA+AGG | 0.675091 | 4_4:-23979991 | None:intergenic |
| ATGCTACTGCAGATGAAGAG+GGG | 0.676889 | 4_4:+23980986 | Msa0675350:three_prime_UTR |
| TGTGAACCACGAGAAGTGAG+TGG | 0.677800 | 4_4:-23980520 | None:intergenic |
| ACTCCACCGGAAGGTACCAA+GGG | 0.680036 | 4_4:+23978588 | Msa0675350:five_prime_UTR |
| GATCTGAGTTCAATTGACCA+GGG | 0.680125 | 4_4:-23980432 | None:intergenic |
| CCTTGGTGCTCATCTTACCA+CGG | 0.683046 | 4_4:-23980657 | None:intergenic |
| GGGATGTAACGGGTATGTGA+CGG | 0.688890 | 4_4:-23978313 | None:intergenic |
| TGAACCACGAGAAGTGAGTG+GGG | 0.716024 | 4_4:-23980518 | None:intergenic |
| ATGCTGTCAAATAACGACCG+TGG | 0.720715 | 4_4:-23980624 | None:intergenic |
| CCGTGGTAAGATGAGCACCA+AGG | 0.721405 | 4_4:+23980657 | Msa0675350:three_prime_UTR |
| ATTGCTGGTACTCTGAGACA+AGG | 0.726640 | 4_4:-23980957 | None:intergenic |
| TGGTAAGATGAGCACCAAGG+AGG | 0.729589 | 4_4:+23980660 | Msa0675350:three_prime_UTR |
| GAGATTCTTCACATCCAAGG+AGG | 0.735981 | 4_4:+23978503 | Msa0675350:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAGTTATACAAGTTTTTA+AGG | - | chr4_4:23979574-23979593 | None:intergenic | 15.0% |
| !! | AAAAACTTGTATAACTAATT+AGG | + | chr4_4:23979575-23979594 | Msa0675350:intron | 15.0% |
| !!! | TTGATAATCAGATTTGATAT+GGG | + | chr4_4:23979613-23979632 | Msa0675350:intron | 20.0% |
| !! | AAGTAAACAAAACAAAACAA+AGG | - | chr4_4:23979913-23979932 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTACTTGAATT+TGG | + | chr4_4:23979918-23979937 | Msa0675350:intron | 20.0% |
| !!! | TGTTTTGTTTACTTGAATTT+GGG | + | chr4_4:23979919-23979938 | Msa0675350:intron | 20.0% |
| !!! | ACTTTTGATTTCTAAAATCA+GGG | + | chr4_4:23980024-23980043 | Msa0675350:CDS | 20.0% |
| !! | ATTATTAGCAAAAACTTAAC+AGG | - | chr4_4:23980273-23980292 | None:intergenic | 20.0% |
| !! | ATTTGACAACAAATGAAAAA+AGG | - | chr4_4:23981226-23981245 | None:intergenic | 20.0% |
| !! | CATGAATAATATGGAAATAT+AGG | - | chr4_4:23981253-23981272 | None:intergenic | 20.0% |
| !! | TTCCATATTATTCATGTTAA+TGG | + | chr4_4:23981257-23981276 | Msa0675350:three_prime_UTR | 20.0% |
| !! | AACCATTAACATGAATAATA+TGG | - | chr4_4:23981262-23981281 | None:intergenic | 20.0% |
| !! | ATATTATTCATGTTAATGGT+TGG | + | chr4_4:23981261-23981280 | Msa0675350:three_prime_UTR | 20.0% |
| ! | AAACAATTAGAAGCAGAAAT+CGG | - | chr4_4:23978905-23978924 | None:intergenic | 25.0% |
| !!! | GTTGATAATCAGATTTGATA+TGG | + | chr4_4:23979612-23979631 | Msa0675350:intron | 25.0% |
| !! | ATTTGAAGTGCTATAGTAAT+AGG | + | chr4_4:23979665-23979684 | Msa0675350:intron | 25.0% |
| ! | TCTATGTGTTGTGATAAATT+AGG | + | chr4_4:23979787-23979806 | Msa0675350:intron | 25.0% |
| ! | TTAGAAGTTGTGATATAACT+TGG | + | chr4_4:23979854-23979873 | Msa0675350:intron | 25.0% |
| !!! | CACTTTTGATTTCTAAAATC+AGG | + | chr4_4:23980023-23980042 | Msa0675350:CDS | 25.0% |
| !!! | AAAATGGCTTCTACTTTTAT+TGG | + | chr4_4:23980790-23980809 | Msa0675350:three_prime_UTR | 25.0% |
| AGAAGAAAGTGACTTTATAG+CGG | - | chr4_4:23978337-23978356 | None:intergenic | 30.0% | |
| TCATTTCTCATAGAATTCTC+TGG | + | chr4_4:23978375-23978394 | Msa0675350:five_prime_UTR | 30.0% | |
| ACACAAAAATTCCTAGATCA+AGG | - | chr4_4:23979114-23979133 | None:intergenic | 30.0% | |
| ACAAGTTATTCAAAACACAG+TGG | - | chr4_4:23979733-23979752 | None:intergenic | 30.0% | |
| ! | TTAGTATGTAAGAGCATGTT+TGG | + | chr4_4:23979762-23979781 | Msa0675350:intron | 30.0% |
| ! | TGAATTTGGGATTTCTAACA+TGG | + | chr4_4:23979932-23979951 | Msa0675350:intron | 30.0% |
| !! | TTTGATTTCTAAAATCAGGG+AGG | + | chr4_4:23980027-23980046 | Msa0675350:CDS | 30.0% |
| AACTTAACAGGCAAAAACAT+AGG | - | chr4_4:23980261-23980280 | None:intergenic | 30.0% | |
| AGATCTGAACCATCTAATTT+CGG | + | chr4_4:23980375-23980394 | Msa0675350:exon | 30.0% | |
| ATTCATCATACTTTGTTGAG+TGG | + | chr4_4:23980716-23980735 | Msa0675350:three_prime_UTR | 30.0% | |
| ! | AATGCAAGAAAGCTTTTCTA+CGG | - | chr4_4:23980876-23980895 | None:intergenic | 30.0% |
| !! | TTGTTTGCTATTGTAGTTTC+AGG | + | chr4_4:23981186-23981205 | Msa0675350:three_prime_UTR | 30.0% |
| TCTTAATCTTACAACTGAAC+TGG | + | chr4_4:23981331-23981350 | Msa0675350:three_prime_UTR | 30.0% | |
| GAAGAAAGTGACTTTATAGC+GGG | - | chr4_4:23978336-23978355 | None:intergenic | 35.0% | |
| ! | TGAGTTTGAAGAACGAGTTT+TGG | - | chr4_4:23978469-23978488 | None:intergenic | 35.0% |
| GAGAATTGTGATTGTCTTCA+AGG | + | chr4_4:23978868-23978887 | Msa0675350:CDS | 35.0% | |
| !!! | AGAGTTTTGAACCTTGATCT+AGG | + | chr4_4:23979413-23979432 | Msa0675350:intron | 35.0% |
| ACACAGAAATTCCTAGATCA+AGG | - | chr4_4:23979427-23979446 | None:intergenic | 35.0% | |
| AATCAGATTTGATATGGGAG+TGG | + | chr4_4:23979618-23979637 | Msa0675350:intron | 35.0% | |
| TGATATAACTTGGACGTGTA+TGG | + | chr4_4:23979864-23979883 | Msa0675350:intron | 35.0% | |
| ! | CATGGTTTTCAGAATCTTTC+AGG | + | chr4_4:23979950-23979969 | Msa0675350:intron | 35.0% |
| !!! | TCAGAATCTTTCAGGTTTTC+AGG | + | chr4_4:23979958-23979977 | Msa0675350:intron | 35.0% |
| AAGTAAGCATCATTCGATCA+GGG | - | chr4_4:23980057-23980076 | None:intergenic | 35.0% | |
| AAAGTAAGCATCATTCGATC+AGG | - | chr4_4:23980058-23980077 | None:intergenic | 35.0% | |
| ATTATGATGAACTCACAGCT+TGG | - | chr4_4:23980238-23980257 | None:intergenic | 35.0% | |
| ! | AAATTGAGCCTTGTGTTGTT+TGG | + | chr4_4:23980342-23980361 | Msa0675350:intron | 35.0% |
| ! | ACAGTGGATTTCACATTGTT+GGG | - | chr4_4:23980745-23980764 | None:intergenic | 35.0% |
| !!! | AGTAGAAGCCATTTTAAGAC+CGG | - | chr4_4:23980785-23980804 | None:intergenic | 35.0% |
| AAACATCTCCTGAATAGATG+TGG | - | chr4_4:23980821-23980840 | None:intergenic | 35.0% | |
| CATCTATTCAGGAGATGTTT+AGG | + | chr4_4:23980821-23980840 | Msa0675350:three_prime_UTR | 35.0% | |
| TATTCAGGAGATGTTTAGGA+GGG | + | chr4_4:23980825-23980844 | Msa0675350:three_prime_UTR | 35.0% | |
| GTAGAAAAGCTTTCTTGCAT+TGG | + | chr4_4:23980875-23980894 | Msa0675350:three_prime_UTR | 35.0% | |
| ACAGTAGTATTGTGATGTGA+AGG | + | chr4_4:23981057-23981076 | Msa0675350:three_prime_UTR | 35.0% | |
| CAGTAGTATTGTGATGTGAA+GGG | + | chr4_4:23981058-23981077 | Msa0675350:three_prime_UTR | 35.0% | |
| !! | GAAAAAGGTATTCAGGTTTG+GGG | - | chr4_4:23981150-23981169 | None:intergenic | 35.0% |
| !! | CGAAAAAGGTATTCAGGTTT+GGG | - | chr4_4:23981151-23981170 | None:intergenic | 35.0% |
| ! | CCAAACCTGAATACCTTTTT+CGG | + | chr4_4:23981149-23981168 | Msa0675350:three_prime_UTR | 35.0% |
| ! | CAAACCTGAATACCTTTTTC+GGG | + | chr4_4:23981150-23981169 | Msa0675350:three_prime_UTR | 35.0% |
| !! | AAACCTGAATACCTTTTTCG+GGG | + | chr4_4:23981151-23981170 | Msa0675350:three_prime_UTR | 35.0% |
| ! | ACTTTATAGCGGGATGTAAC+GGG | - | chr4_4:23978326-23978345 | None:intergenic | 40.0% |
| ! | GACTTTATAGCGGGATGTAA+CGG | - | chr4_4:23978327-23978346 | None:intergenic | 40.0% |
| TGTCCAAAGACGAAGTTATC+AGG | - | chr4_4:23978758-23978777 | None:intergenic | 40.0% | |
| !! | AGGAGCTGAGTTGATTGATT+CGG | + | chr4_4:23978819-23978838 | Msa0675350:five_prime_UTR | 40.0% |
| !! | ATTCGGTGCTTGATGTTGTT+AGG | + | chr4_4:23978836-23978855 | Msa0675350:exon | 40.0% |
| TGTCAGATACCTTAGGAGAT+GGG | - | chr4_4:23980090-23980109 | None:intergenic | 40.0% | |
| ACAACAGTGTCAGATACCTT+AGG | - | chr4_4:23980097-23980116 | None:intergenic | 40.0% | |
| CATCAGCATTCTCAACAAGT+TGG | - | chr4_4:23980150-23980169 | None:intergenic | 40.0% | |
| TGAGAATGCTGATGAATGCA+TGG | + | chr4_4:23980156-23980175 | Msa0675350:CDS | 40.0% | |
| GCTTGGAGTAGTGAGTTTAA+GGG | - | chr4_4:23980221-23980240 | None:intergenic | 40.0% | |
| AGCTTGGAGTAGTGAGTTTA+AGG | - | chr4_4:23980222-23980241 | None:intergenic | 40.0% | |
| AACTGCAACCAAACAACACA+AGG | - | chr4_4:23980353-23980372 | None:intergenic | 40.0% | |
| !! | TTGTGTTGTTTGGTTGCAGT+TGG | + | chr4_4:23980352-23980371 | Msa0675350:intron | 40.0% |
| TCATTGTGGCCGAAATTAGA+TGG | - | chr4_4:23980387-23980406 | None:intergenic | 40.0% | |
| ACATGTAACACCACTCATTG+TGG | - | chr4_4:23980401-23980420 | None:intergenic | 40.0% | |
| GATCTGAGTTCAATTGACCA+GGG | - | chr4_4:23980435-23980454 | None:intergenic | 40.0% | |
| AGATCTGAGTTCAATTGACC+AGG | - | chr4_4:23980436-23980455 | None:intergenic | 40.0% | |
| GAACTCAGATCTTCGCAAAT+TGG | + | chr4_4:23980444-23980463 | Msa0675350:three_prime_UTR | 40.0% | |
| AAGAAATGCAAACGAGGGAA+AGG | - | chr4_4:23980484-23980503 | None:intergenic | 40.0% | |
| CCATGAAGAAATGCAAACGA+GGG | - | chr4_4:23980489-23980508 | None:intergenic | 40.0% | |
| ACCATGAAGAAATGCAAACG+AGG | - | chr4_4:23980490-23980509 | None:intergenic | 40.0% | |
| TCGTTTGCATTTCTTCATGG+TGG | + | chr4_4:23980489-23980508 | Msa0675350:three_prime_UTR | 40.0% | |
| CGTTTGCATTTCTTCATGGT+GGG | + | chr4_4:23980490-23980509 | Msa0675350:three_prime_UTR | 40.0% | |
| ! | GACAGTGGATTTCACATTGT+TGG | - | chr4_4:23980746-23980765 | None:intergenic | 40.0% |
| TGGTAACTCCACATCTATTC+AGG | + | chr4_4:23980810-23980829 | Msa0675350:three_prime_UTR | 40.0% | |
| CTATTCAGGAGATGTTTAGG+AGG | + | chr4_4:23980824-23980843 | Msa0675350:three_prime_UTR | 40.0% | |
| ! | GAAAGCTTTTCTACGGAACA+TGG | - | chr4_4:23980869-23980888 | None:intergenic | 40.0% |
| ! | GCTTTCTTGCATTGGTATAC+TGG | + | chr4_4:23980883-23980902 | Msa0675350:three_prime_UTR | 40.0% |
| ! | TTGCATTGGTATACTGGAGA+GGG | + | chr4_4:23980889-23980908 | Msa0675350:three_prime_UTR | 40.0% |
| GTATGACTATGAAGATGAGG+AGG | + | chr4_4:23981008-23981027 | Msa0675350:three_prime_UTR | 40.0% | |
| !! | CCGAAAAAGGTATTCAGGTT+TGG | - | chr4_4:23981152-23981171 | None:intergenic | 40.0% |
| !!! | AACCTGAATACCTTTTTCGG+GGG | + | chr4_4:23981152-23981171 | Msa0675350:three_prime_UTR | 40.0% |
| AGAGAGAGAGAGAGAGAAGA+AGG | - | chr4_4:23978410-23978429 | None:intergenic | 45.0% | |
| TCTCTCTCTCGAACTCGTTA+CGG | + | chr4_4:23978423-23978442 | Msa0675350:five_prime_UTR | 45.0% | |
| !!! | CGAGTTTTGGAGTGAGAAAG+TGG | - | chr4_4:23978456-23978475 | None:intergenic | 45.0% |
| CGTGAGATTCTTCACATCCA+AGG | + | chr4_4:23978500-23978519 | Msa0675350:five_prime_UTR | 45.0% | |
| GAGATTCTTCACATCCAAGG+AGG | + | chr4_4:23978503-23978522 | Msa0675350:five_prime_UTR | 45.0% | |
| ACCAAATCGGAGCCAAATTC+TGG | + | chr4_4:23978537-23978556 | Msa0675350:five_prime_UTR | 45.0% | |
| CCAAATCGGAGCCAAATTCT+GGG | + | chr4_4:23978538-23978557 | Msa0675350:five_prime_UTR | 45.0% | |
| GCACACAACTTCCCAGAATT+TGG | - | chr4_4:23978552-23978571 | None:intergenic | 45.0% | |
| GTTGAAGATCGTTGTTCCCT+TGG | - | chr4_4:23978607-23978626 | None:intergenic | 45.0% | |
| TACTACAACGAAGCGAGTTG+TGG | + | chr4_4:23978644-23978663 | Msa0675350:five_prime_UTR | 45.0% | |
| AGATCCATGAGAACAGCTCT+AGG | - | chr4_4:23978680-23978699 | None:intergenic | 45.0% | |
| TAGAGCTGTTCTCATGGATC+TGG | + | chr4_4:23978679-23978698 | Msa0675350:five_prime_UTR | 45.0% | |
| ! | GTCCATACGGTCAGATTTTC+CGG | + | chr4_4:23978732-23978751 | Msa0675350:five_prime_UTR | 45.0% |
| CAAAGACGAAGTTATCAGGC+CGG | - | chr4_4:23978754-23978773 | None:intergenic | 45.0% | |
| AACTTCGTCTTTGGACAGTC+CGG | + | chr4_4:23978761-23978780 | Msa0675350:five_prime_UTR | 45.0% | |
| GGTGCTTGATGTTGTTAGGA+AGG | + | chr4_4:23978840-23978859 | Msa0675350:exon | 45.0% | |
| GCTTGATGTTGTTAGGAAGG+AGG | + | chr4_4:23978843-23978862 | Msa0675350:exon | 45.0% | |
| AGAGAATCGAGCCTTGATCT+AGG | + | chr4_4:23979100-23979119 | Msa0675350:intron | 45.0% | |
| TACCTTAGGAGATGGGAACA+CGG | - | chr4_4:23980083-23980102 | None:intergenic | 45.0% | |
| GTGTCAGATACCTTAGGAGA+TGG | - | chr4_4:23980091-23980110 | None:intergenic | 45.0% | |
| ! | ACAGAGAGTGTAGCGTTGTA+AGG | - | chr4_4:23980124-23980143 | None:intergenic | 45.0% |
| ! | CAGCATTCTCAACAAGTTGG+TGG | - | chr4_4:23980147-23980166 | None:intergenic | 45.0% |
| TGCTGATGAATGCATGGTTC+TGG | + | chr4_4:23980162-23980181 | Msa0675350:intron | 45.0% | |
| GAGTAGTGAGTTTAAGGGTG+CGG | - | chr4_4:23980216-23980235 | None:intergenic | 45.0% | |
| CTAATTTCGGCCACAATGAG+TGG | + | chr4_4:23980388-23980407 | Msa0675350:three_prime_UTR | 45.0% | |
| ACATGTTGTCTTCGATTCCC+TGG | + | chr4_4:23980415-23980434 | Msa0675350:three_prime_UTR | 45.0% | |
| CCCTCGTTTGCATTTCTTCA+TGG | + | chr4_4:23980486-23980505 | Msa0675350:three_prime_UTR | 45.0% | |
| ATGCTGTCAAATAACGACCG+TGG | - | chr4_4:23980627-23980646 | None:intergenic | 45.0% | |
| !!! | GAAGCCATTTTAAGACCGGT+TGG | - | chr4_4:23980781-23980800 | None:intergenic | 45.0% |
| ! | CTTGCATTGGTATACTGGAG+AGG | + | chr4_4:23980888-23980907 | Msa0675350:three_prime_UTR | 45.0% |
| TTGGTATACTGGAGAGGGTA+TGG | + | chr4_4:23980894-23980913 | Msa0675350:three_prime_UTR | 45.0% | |
| !! | ATTGCTGGTACTCTGAGACA+AGG | - | chr4_4:23980960-23980979 | None:intergenic | 45.0% |
| CAGTAGCATCTTGGTATTGC+TGG | - | chr4_4:23980975-23980994 | None:intergenic | 45.0% | |
| CTTCATCTGCAGTAGCATCT+TGG | - | chr4_4:23980984-23981003 | None:intergenic | 45.0% | |
| AGATGCTACTGCAGATGAAG+AGG | + | chr4_4:23980984-23981003 | Msa0675350:three_prime_UTR | 45.0% | |
| GATGCTACTGCAGATGAAGA+GGG | + | chr4_4:23980985-23981004 | Msa0675350:three_prime_UTR | 45.0% | |
| ATGCTACTGCAGATGAAGAG+GGG | + | chr4_4:23980986-23981005 | Msa0675350:three_prime_UTR | 45.0% | |
| GGGGTATGACTATGAAGATG+AGG | + | chr4_4:23981005-23981024 | Msa0675350:three_prime_UTR | 45.0% | |
| AGATGAGGAGGAAGAAGTTC+AGG | + | chr4_4:23981020-23981039 | Msa0675350:three_prime_UTR | 45.0% | |
| !! | TACCCCCGAAAAAGGTATTC+AGG | - | chr4_4:23981157-23981176 | None:intergenic | 45.0% |
| !!! | AATACCTTTTTCGGGGGTAC+TGG | + | chr4_4:23981158-23981177 | Msa0675350:three_prime_UTR | 45.0% |
| AAATCCAGTACCCCCGAAAA+AGG | - | chr4_4:23981165-23981184 | None:intergenic | 45.0% | |
| !! | GGGATGTAACGGGTATGTGA+CGG | - | chr4_4:23978316-23978335 | None:intergenic | 50.0% |
| CACATCCAAGGAGGACAATG+CGG | + | chr4_4:23978512-23978531 | Msa0675350:five_prime_UTR | 50.0% | |
| ACATCCAAGGAGGACAATGC+GGG | + | chr4_4:23978513-23978532 | Msa0675350:five_prime_UTR | 50.0% | |
| GGACAATGCGGGAACCAAAT+CGG | + | chr4_4:23978524-23978543 | Msa0675350:five_prime_UTR | 50.0% | |
| ! | CCCAGAATTTGGCTCCGATT+TGG | - | chr4_4:23978541-23978560 | None:intergenic | 50.0% |
| GTTGTTCCCTTGGTACCTTC+CGG | - | chr4_4:23978597-23978616 | None:intergenic | 50.0% | |
| CGTTCCTAGAGCTGTTCTCA+TGG | + | chr4_4:23978673-23978692 | Msa0675350:five_prime_UTR | 50.0% | |
| ! | TTCTCATGGATCTGGAGCCA+GGG | + | chr4_4:23978687-23978706 | Msa0675350:five_prime_UTR | 50.0% |
| ACTATGGACAGCGTCAGATC+TGG | + | chr4_4:23978710-23978729 | Msa0675350:five_prime_UTR | 50.0% | |
| AGCGTCAGATCTGGTCCATA+CGG | + | chr4_4:23978719-23978738 | Msa0675350:five_prime_UTR | 50.0% | |
| CGGCCTGATAACTTCGTCTT+TGG | + | chr4_4:23978752-23978771 | Msa0675350:five_prime_UTR | 50.0% | |
| GCGAAAGGTCACTACACTGA+AGG | + | chr4_4:23978799-23978818 | Msa0675350:five_prime_UTR | 50.0% | |
| !! | TTTCAGGTTTGCCACTCCCT+TGG | + | chr4_4:23979974-23979993 | Msa0675350:intron | 50.0% |
| AGAACCAGTACCACCACCAA+GGG | - | chr4_4:23979993-23980012 | None:intergenic | 50.0% | |
| !! | TGGTGGTACTGGTTCTGGAA+TGG | + | chr4_4:23979997-23980016 | Msa0675350:CDS | 50.0% |
| !! | GGTGGTACTGGTTCTGGAAT+GGG | + | chr4_4:23979998-23980017 | Msa0675350:CDS | 50.0% |
| TGAACCACGAGAAGTGAGTG+GGG | - | chr4_4:23980521-23980540 | None:intergenic | 50.0% | |
| GTGAACCACGAGAAGTGAGT+GGG | - | chr4_4:23980522-23980541 | None:intergenic | 50.0% | |
| TGTGAACCACGAGAAGTGAG+TGG | - | chr4_4:23980523-23980542 | None:intergenic | 50.0% | |
| TCGTGGTTCACAGCAGTACA+GGG | + | chr4_4:23980531-23980550 | Msa0675350:three_prime_UTR | 50.0% | |
| CTTCGAATCCCACATCTGCT+GGG | - | chr4_4:23980578-23980597 | None:intergenic | 50.0% | |
| TCTTCGAATCCCACATCTGC+TGG | - | chr4_4:23980579-23980598 | None:intergenic | 50.0% | |
| GCTCATCTTACCACGGAACA+TGG | - | chr4_4:23980653-23980672 | None:intergenic | 50.0% | |
| !! | CCTTGGTGCTCATCTTACCA+CGG | - | chr4_4:23980660-23980679 | None:intergenic | 50.0% |
| TGGTAAGATGAGCACCAAGG+AGG | + | chr4_4:23980660-23980679 | Msa0675350:three_prime_UTR | 50.0% | |
| CATCTGCTCATCAACCTCCT+TGG | - | chr4_4:23980677-23980696 | None:intergenic | 50.0% | |
| !!! | CCATTTTAAGACCGGTTGGC+GGG | - | chr4_4:23980777-23980796 | None:intergenic | 50.0% |
| !!! | GCCATTTTAAGACCGGTTGG+CGG | - | chr4_4:23980778-23980797 | None:intergenic | 50.0% |
| GAGGGTGAGTGAGCAATTCA+CGG | + | chr4_4:23980843-23980862 | Msa0675350:three_prime_UTR | 50.0% | |
| ! | TGGAGAGGGTATGGATGAGA+TGG | + | chr4_4:23980903-23980922 | Msa0675350:three_prime_UTR | 50.0% |
| TGAGGAGGAAGAAGTTCAGG+AGG | + | chr4_4:23981023-23981042 | Msa0675350:three_prime_UTR | 50.0% | |
| GAAGTTGTGTGCGCTGAGCA+CGG | + | chr4_4:23978560-23978579 | Msa0675350:five_prime_UTR | 55.0% | |
| AAGTTGTGTGCGCTGAGCAC+GGG | + | chr4_4:23978561-23978580 | Msa0675350:five_prime_UTR | 55.0% | |
| !! | ACTCCACCGGAAGGTACCAA+GGG | + | chr4_4:23978588-23978607 | Msa0675350:five_prime_UTR | 55.0% |
| ! | GTTCTCATGGATCTGGAGCC+AGG | + | chr4_4:23978686-23978705 | Msa0675350:five_prime_UTR | 55.0% |
| GGCCGGAAAATCTGACCGTA+TGG | - | chr4_4:23978737-23978756 | None:intergenic | 55.0% | |
| GACCTTTCGCCCAGTGTTTC+CGG | - | chr4_4:23978789-23978808 | None:intergenic | 55.0% | |
| CAGAACCAGTACCACCACCA+AGG | - | chr4_4:23979994-23980013 | None:intergenic | 55.0% | |
| !! | CTTGGTGGTGGTACTGGTTC+TGG | + | chr4_4:23979992-23980011 | Msa0675350:CDS | 55.0% |
| CTCCGTGTTCCCATCTCCTA+AGG | + | chr4_4:23980078-23980097 | Msa0675350:CDS | 55.0% | |
| TTTGCCCCACTCACTTCTCG+TGG | + | chr4_4:23980514-23980533 | Msa0675350:three_prime_UTR | 55.0% | |
| CTCGTGGTTCACAGCAGTAC+AGG | + | chr4_4:23980530-23980549 | Msa0675350:three_prime_UTR | 55.0% | |
| TGAGCTGACCCAGCAGATGT+GGG | + | chr4_4:23980567-23980586 | Msa0675350:three_prime_UTR | 55.0% | |
| GTCAAATAACGACCGTGGCG+AGG | - | chr4_4:23980622-23980641 | None:intergenic | 55.0% | |
| ACAGCATCTGCCATGTTCCG+TGG | + | chr4_4:23980640-23980659 | Msa0675350:three_prime_UTR | 55.0% | |
| CCGTGGTAAGATGAGCACCA+AGG | + | chr4_4:23980657-23980676 | Msa0675350:three_prime_UTR | 55.0% | |
| TGGCGGGATATCACAGACAG+TGG | - | chr4_4:23980761-23980780 | None:intergenic | 55.0% | |
| GTCTGTGATATCCCGCCAAC+CGG | + | chr4_4:23980763-23980782 | Msa0675350:three_prime_UTR | 55.0% | |
| CCCGCCAACCGGTCTTAAAA+TGG | + | chr4_4:23980774-23980793 | Msa0675350:three_prime_UTR | 55.0% | |
| GGTTCCCGCATTGTCCTCCT+TGG | - | chr4_4:23978520-23978539 | None:intergenic | 60.0% | |
| !! | GACTCCACCGGAAGGTACCA+AGG | + | chr4_4:23978587-23978606 | Msa0675350:five_prime_UTR | 60.0% |
| GTTCCCTTGGTACCTTCCGG+TGG | - | chr4_4:23978594-23978613 | None:intergenic | 60.0% | |
| ! | GGATCTGGAGCCAGGGACTA+TGG | + | chr4_4:23978694-23978713 | Msa0675350:five_prime_UTR | 60.0% |
| CTGACGCTGTCCATAGTCCC+TGG | - | chr4_4:23978707-23978726 | None:intergenic | 60.0% | |
| GTCTTTGGACAGTCCGGTGC+CGG | + | chr4_4:23978767-23978786 | Msa0675350:five_prime_UTR | 60.0% | |
| ! | AGTCCGGTGCCGGAAACACT+GGG | + | chr4_4:23978777-23978796 | Msa0675350:five_prime_UTR | 60.0% |
| TGCCGGAAACACTGGGCGAA+AGG | + | chr4_4:23978784-23978803 | Msa0675350:five_prime_UTR | 60.0% | |
| CAGGTTTGCCACTCCCTTGG+TGG | + | chr4_4:23979977-23979996 | Msa0675350:intron | 60.0% | |
| GTTTGCCACTCCCTTGGTGG+TGG | + | chr4_4:23979980-23979999 | Msa0675350:CDS | 60.0% | |
| CAGTACCACCACCAAGGGAG+TGG | - | chr4_4:23979988-23980007 | None:intergenic | 60.0% | |
| !! | CACTCCCTTGGTGGTGGTAC+TGG | + | chr4_4:23979986-23980005 | Msa0675350:CDS | 60.0% |
| CACATCTGCTGGGTCAGCTC+AGG | - | chr4_4:23980568-23980587 | None:intergenic | 60.0% | |
| CTGAGCTGACCCAGCAGATG+TGG | + | chr4_4:23980566-23980585 | Msa0675350:three_prime_UTR | 60.0% | |
| ! | GAGCACGGGATCGACTCCAC+CGG | + | chr4_4:23978575-23978594 | Msa0675350:five_prime_UTR | 65.0% |
| ! | ACGGGATCGACTCCACCGGA+AGG | + | chr4_4:23978579-23978598 | Msa0675350:five_prime_UTR | 65.0% |
| ! | CAGTCCGGTGCCGGAAACAC+TGG | + | chr4_4:23978776-23978795 | Msa0675350:five_prime_UTR | 65.0% |
| TCGCCCAGTGTTTCCGGCAC+CGG | - | chr4_4:23978783-23978802 | None:intergenic | 65.0% | |
| TGCGCTGCTGATCCTCGCCA+CGG | + | chr4_4:23980607-23980626 | Msa0675350:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 23978312 | 23981369 | 23978312 | ID=Msa0675350;Name=Msa0675350 |
| chr4_4 | mRNA | 23978312 | 23981369 | 23978312 | ID=Msa0675350-mRNA-1;Parent=Msa0675350;Name=Msa0675350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=536|0|0.66|1|0|0.33|3|987|83 |
| chr4_4 | exon | 23978312 | 23978889 | 23978312 | ID=Msa0675350-mRNA-1:exon:6674;Parent=Msa0675350-mRNA-1 |
| chr4_4 | exon | 23979980 | 23980177 | 23979980 | ID=Msa0675350-mRNA-1:exon:6675;Parent=Msa0675350-mRNA-1 |
| chr4_4 | exon | 23980371 | 23981369 | 23980371 | ID=Msa0675350-mRNA-1:exon:6676;Parent=Msa0675350-mRNA-1 |
| chr4_4 | five_prime_UTR | 23978312 | 23978847 | 23978312 | ID=Msa0675350-mRNA-1:five_prime_utr;Parent=Msa0675350-mRNA-1 |
| chr4_4 | CDS | 23978848 | 23978889 | 23978848 | ID=Msa0675350-mRNA-1:cds;Parent=Msa0675350-mRNA-1 |
| chr4_4 | CDS | 23979980 | 23980177 | 23979980 | ID=Msa0675350-mRNA-1:cds;Parent=Msa0675350-mRNA-1 |
| chr4_4 | CDS | 23980371 | 23980382 | 23980371 | ID=Msa0675350-mRNA-1:cds;Parent=Msa0675350-mRNA-1 |
| chr4_4 | three_prime_UTR | 23980383 | 23981369 | 23980383 | ID=Msa0675350-mRNA-1:three_prime_utr;Parent=Msa0675350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
