AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205110 MtrunA17_Chr5g0401131 59.806 515 122 15 1 460 7 491 0.0 525
Msa1205110 MtrunA17_Chr4g0054071 94.468 235 6 3 1 233 7 236 2.11e-156 442
Msa1205110 MtrunA17_Chr2g0329591 43.614 415 166 10 102 460 50 452 1.83e-104 318
Msa1205110 MtrunA17_Chr5g0445331 27.225 382 218 9 130 459 159 532 3.62e-41 154
Msa1205110 MtrunA17_Chr1g0159461 27.368 380 216 10 130 459 223 592 7.01e-40 151
Msa1205110 MtrunA17_Chr5g0447691 26.579 380 219 9 130 459 175 544 3.83e-39 148
Msa1205110 MtrunA17_Chr2g0319091 26.893 383 214 9 130 459 210 579 1.09e-37 145
Msa1205110 MtrunA17_Chr3g0101141 25.126 398 222 10 120 459 163 542 4.69e-36 139
Msa1205110 MtrunA17_Chr3g0125811 26.053 380 221 10 130 459 201 570 6.43e-36 139
Msa1205110 MtrunA17_Chr7g0224271 26.615 387 214 11 131 459 299 673 1.09e-34 137
Msa1205110 MtrunA17_Chr4g0053901 23.899 477 262 10 75 460 3 469 4.01e-34 133
Msa1205110 MtrunA17_Chr5g0401421 24.000 450 240 10 104 460 7 447 1.60e-32 128
Msa1205110 MtrunA17_Chr2g0290241 26.124 356 203 10 154 459 80 425 3.54e-32 127
Msa1205110 MtrunA17_Chr4g0076091 25.393 382 220 11 130 458 173 542 1.27e-31 127
Msa1205110 MtrunA17_Chr8g0344101 27.318 399 206 13 128 459 219 600 1.25e-29 122
Msa1205110 MtrunA17_Chr7g0245601 24.595 370 218 13 135 460 441 793 1.36e-26 113
Msa1205110 MtrunA17_Chr4g0057291 23.238 383 231 10 131 460 291 663 4.57e-26 111
Msa1205110 MtrunA17_Chr4g0039661 25.729 377 215 9 133 459 194 555 1.36e-25 109
Msa1205110 MtrunA17_Chr3g0110971 23.560 382 223 8 133 459 220 587 2.42e-25 108
Msa1205110 MtrunA17_Chr8g0376381 23.387 372 221 9 133 459 170 522 2.56e-25 108
Msa1205110 MtrunA17_Chr2g0328341 23.873 377 230 12 132 460 272 639 3.74e-24 105
Msa1205110 MtrunA17_Chr2g0328391 25.722 381 226 9 130 460 297 670 6.78e-24 105
Msa1205110 MtrunA17_Chr4g0038761 24.599 374 217 15 135 460 87 443 6.34e-23 100
Msa1205110 MtrunA17_Chr2g0328381 22.222 387 224 12 132 460 275 642 1.73e-22 100
Msa1205110 MtrunA17_Chr7g0236851 27.869 244 162 5 221 458 421 656 2.45e-22 100
Msa1205110 MtrunA17_Chr4g0057891 22.597 385 228 10 132 459 149 520 1.27e-21 97.4
Msa1205110 MtrunA17_Chr4g0031711 22.977 383 236 8 130 460 359 734 1.73e-21 97.8
Msa1205110 MtrunA17_Chr4g0031701 24.147 381 225 12 130 456 252 622 2.03e-21 97.4
Msa1205110 MtrunA17_Chr4g0031721 23.298 382 232 11 130 460 314 685 3.30e-21 96.7
Msa1205110 MtrunA17_Chr4g0031741 23.947 380 226 12 132 460 284 651 3.94e-21 96.7
Msa1205110 MtrunA17_Chr2g0323111 29.348 184 118 4 282 460 131 307 5.44e-21 93.6
Msa1205110 MtrunA17_Chr8g0357601 24.274 379 226 14 133 459 183 552 6.51e-21 95.5
Msa1205110 MtrunA17_Chr2g0306641 23.167 341 197 10 168 459 163 487 9.76e-21 94.7
Msa1205110 MtrunA17_Chr4g0031731 23.360 381 228 10 130 456 252 622 6.94e-20 92.4
Msa1205110 MtrunA17_Chr7g0238891 21.164 378 245 8 130 460 370 741 4.21e-19 90.5
Msa1205110 MtrunA17_Chr2g0328411 22.546 377 230 12 132 458 289 653 5.63e-19 89.7
Msa1205110 MtrunA17_Chr2g0328401 21.893 338 217 8 132 425 290 624 2.02e-18 88.2
Msa1205110 MtrunA17_Chr1g0183641 24.259 371 220 13 132 458 123 476 2.82e-18 87.0
Msa1205110 MtrunA17_Chr2g0328431 22.812 377 233 11 132 460 289 655 2.00e-17 85.1
Msa1205110 MtrunA17_Chr6g0468561 24.365 394 212 15 129 459 292 662 7.79e-16 80.1
Msa1205110 MtrunA17_Chr1g0200401 24.378 402 210 14 131 459 79 459 1.84e-15 78.6
Msa1205110 MtrunA17_Chr1g0194621 24.255 235 168 5 229 459 290 518 2.85e-15 78.2
Msa1205110 MtrunA17_Chr3g0085681 28.395 162 108 4 299 459 282 436 7.48e-15 76.3
Msa1205110 MtrunA17_Chr3g0085361 27.778 162 108 3 299 459 197 350 7.05e-14 72.8
Msa1205110 MtrunA17_Chr7g0270031 23.207 237 173 5 227 459 323 554 4.02e-13 71.2
Msa1205110 MtrunA17_Chr3g0114841 23.454 388 230 13 131 458 119 499 1.13e-12 69.7
Msa1205110 MtrunA17_Chr5g0396491 29.677 155 100 4 307 459 331 478 1.99e-12 68.9
Msa1205110 MtrunA17_Chr2g0328371 26.699 206 132 8 216 408 49 248 7.84e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205110 AT4G37650.1 50.595 504 159 13 36 460 38 530 8.64e-152 442
Msa1205110 AT2G04890.1 27.763 371 215 7 132 459 53 413 9.85e-44 159
Msa1205110 AT1G50600.3 26.402 428 244 11 86 459 116 526 1.69e-40 152
Msa1205110 AT1G50600.1 26.402 428 244 11 86 459 187 597 3.77e-40 152
Msa1205110 AT1G50600.2 26.402 428 244 11 86 459 191 601 4.33e-40 152
Msa1205110 AT1G21450.1 28.571 399 204 13 122 459 215 593 6.07e-38 146
Msa1205110 AT3G49950.1 28.316 392 210 11 130 460 28 409 7.19e-36 137
Msa1205110 AT5G48150.1 24.934 377 224 9 133 459 123 490 1.88e-35 137
Msa1205110 AT5G48150.4 24.934 377 224 9 133 459 123 490 1.88e-35 137
Msa1205110 AT5G48150.2 24.934 377 224 9 133 459 123 490 1.88e-35 137
Msa1205110 AT5G48150.3 24.934 377 224 9 133 459 123 490 1.88e-35 137
Msa1205110 AT1G66350.1 27.446 368 209 10 133 459 156 506 4.09e-31 125
Msa1205110 AT3G03450.1 24.603 378 222 8 131 459 182 545 7.28e-31 125
Msa1205110 AT4G17230.1 23.958 384 226 10 130 460 156 526 2.09e-30 124
Msa1205110 AT4G17230.2 23.958 384 226 10 130 460 156 526 2.09e-30 124
Msa1205110 AT5G17490.1 25.538 372 216 8 133 459 161 516 2.13e-29 120
Msa1205110 AT2G29060.2 24.582 419 240 13 104 460 252 656 4.52e-26 112
Msa1205110 AT2G29060.1 24.582 419 240 13 104 460 289 693 5.77e-26 111
Msa1205110 AT3G54220.1 25.201 373 215 14 135 460 296 651 1.91e-25 110
Msa1205110 AT1G14920.1 24.528 371 222 9 133 459 173 529 5.09e-25 108
Msa1205110 AT2G01570.1 22.911 371 228 9 133 459 225 581 1.85e-23 103
Msa1205110 AT2G37650.1 23.670 376 236 10 130 460 345 714 6.79e-23 102
Msa1205110 AT2G37650.2 23.936 376 235 11 130 460 333 702 7.52e-23 102
Msa1205110 AT1G07530.1 22.835 381 236 8 130 460 394 766 1.87e-22 101
Msa1205110 AT5G52510.1 25.856 263 179 6 202 459 389 640 2.70e-22 100
Msa1205110 AT3G13840.1 25.131 382 221 14 128 459 144 510 2.96e-22 99.8
Msa1205110 AT2G29065.1 22.338 385 240 11 130 460 250 629 1.02e-21 98.6
Msa1205110 AT5G66770.1 24.865 370 216 9 140 459 227 584 1.16e-21 98.2
Msa1205110 AT1G63100.2 24.870 386 224 13 131 458 276 653 3.29e-20 94.0
Msa1205110 AT1G63100.1 24.870 386 224 13 131 458 251 628 3.59e-20 94.0
Msa1205110 AT1G50420.1 22.248 436 220 11 131 459 56 479 1.20e-19 91.7
Msa1205110 AT3G50650.1 24.069 349 201 8 163 459 206 542 3.31e-19 90.9
Msa1205110 AT5G41920.1 24.000 375 223 13 131 459 42 400 3.39e-19 89.7
Msa1205110 AT3G46600.1 22.105 380 238 7 130 460 210 580 2.34e-18 88.2
Msa1205110 AT3G46600.2 22.105 380 238 7 130 460 2 372 3.28e-18 86.7
Msa1205110 AT1G55580.1 25.061 411 216 15 132 459 44 445 3.76e-18 87.0
Msa1205110 AT3G46600.3 22.105 380 238 7 130 460 178 548 7.54e-18 86.7
Msa1205110 AT5G59450.1 21.116 502 312 12 19 460 122 599 3.93e-17 84.3
Msa1205110 AT4G08250.1 24.832 298 167 9 210 458 187 476 6.28e-12 67.8

Find 117 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGTTTGGTAATTAATTT+AGG 0.118478 8_1:+61248728 Msa1205110:three_prime_UTR
AGTATAAGAGGATTGATTAA+AGG 0.252023 8_1:+61248753 Msa1205110:three_prime_UTR
AAACAAATCACGGTGGTTTC+CGG 0.257711 8_1:-61248113 None:intergenic
AAGAGTGTTTAAGATGGTTT+AGG 0.258495 8_1:+61248236 Msa1205110:CDS
ATTCTTCGTCTTCTTCTTGT+TGG 0.301725 8_1:-61247208 None:intergenic
TTGATCAAAATATATAAGTT+TGG 0.318808 8_1:+61248715 Msa1205110:three_prime_UTR
TAAGTTTGGTAATTAATTTA+GGG 0.321407 8_1:+61248729 Msa1205110:three_prime_UTR
AGGAGGAGGTTGCATGGTGG+TGG 0.328666 8_1:+61248406 Msa1205110:CDS
TTGTCCATGGACTAACTTCT+TGG 0.329314 8_1:-61247715 None:intergenic
TAAGTAGTGTTTGTTGTGTT+TGG 0.339821 8_1:-61247350 None:intergenic
ATGAAGTTTGTGATGATGTT+AGG 0.345281 8_1:+61248452 Msa1205110:CDS
GCTGATTTAGAAGTTTGTTT+TGG 0.347659 8_1:+61248190 Msa1205110:CDS
AGAGTGTTTAAGATGGTTTA+GGG 0.373474 8_1:+61248237 Msa1205110:CDS
TGGAAGAGGTATTGTTGATT+TGG 0.374691 8_1:+61248330 Msa1205110:CDS
CACGTGCGTTTGGGATTCAT+TGG 0.375500 8_1:+61248649 Msa1205110:three_prime_UTR
ATCACGGTGGTTTCCGGCTC+CGG 0.383080 8_1:-61248107 None:intergenic
GTATAAGAGGATTGATTAAA+GGG 0.383571 8_1:+61248754 Msa1205110:three_prime_UTR
AACTCTTTACATTCGATATC+CGG 0.397888 8_1:+61248088 Msa1205110:CDS
TCCACATGAGTTGTTGGATT+CGG 0.400997 8_1:-61247517 None:intergenic
TACTTCAACTTTGAATTCTC+CGG 0.412778 8_1:+61247431 Msa1205110:CDS
GTTAGTCCATGGACAACGTT+TGG 0.420735 8_1:+61247722 Msa1205110:CDS
AAAATGCACGTGCGGTTTCA+AGG 0.430548 8_1:-61247478 None:intergenic
CGGTGGTGTGGGCCAGTGTA+TGG 0.430711 8_1:+61248566 Msa1205110:CDS
CTTCCACGACAAGAATATTC+CGG 0.431546 8_1:-61248536 None:intergenic
GCATGGTGGTGGGTTTAATA+CGG 0.431980 8_1:+61248417 Msa1205110:CDS
GGAGGAGGTTGCATGGTGGT+GGG 0.435450 8_1:+61248407 Msa1205110:CDS
TTAATTTAGGGGAGTATAAG+AGG 0.440289 8_1:+61248741 Msa1205110:three_prime_UTR
TGTTTATATCTTTGCTTCGT+GGG 0.441689 8_1:+61248131 Msa1205110:CDS
TTAGCATCCACATGAGTTGT+TGG 0.445709 8_1:-61247523 None:intergenic
TTTACATAAGAATAGGGTTG+TGG 0.448203 8_1:+61248892 Msa1205110:three_prime_UTR
TATTAAAGAAGACGAAGCTT+TGG 0.449025 8_1:+61248051 Msa1205110:CDS
TTGTTTATATCTTTGCTTCG+TGG 0.451946 8_1:+61248130 Msa1205110:CDS
GCCTTGAGGTGGCGCTGACA+TGG 0.452766 8_1:+61248591 Msa1205110:exon
TGCTTCGTGGGTTAGAACCT+AGG 0.461690 8_1:+61248143 Msa1205110:CDS
CGTCTCTCCATTGACTCATA+AGG 0.462546 8_1:-61248364 None:intergenic
CAGCGTCACGGTGGAGGAGG+AGG 0.463327 8_1:+61248392 Msa1205110:CDS
TTTGGTTCGGATTTCGTGGA+AGG 0.470121 8_1:+61248208 Msa1205110:CDS
TGAAGTTTGTGATGATGTTA+GGG 0.470148 8_1:+61248453 Msa1205110:CDS
GATTCGGTTTGTGTTGTTGT+CGG 0.471253 8_1:-61247501 None:intergenic
GCTATCTTAGAAGCATTAGA+AGG 0.474912 8_1:+61247764 Msa1205110:CDS
TAAGGTGGTGGTGGAGTTGA+AGG 0.476215 8_1:-61247132 None:intergenic
ATGTTAGGGCTTTGTTGAGA+AGG 0.482294 8_1:+61248467 Msa1205110:CDS
GTGGAGTTGAAGGAAGGATC+AGG 0.484573 8_1:-61247122 None:intergenic
AGAGCTGCTAGAAGTTGTTA+AGG 0.490994 8_1:-61247150 None:intergenic
TCATGAAGGAAATCGGTTCA+AGG 0.493998 8_1:+61247939 Msa1205110:CDS
TTGAATTCTCCGGCAACTCA+TGG 0.501115 8_1:+61247441 Msa1205110:CDS
TTGATAAGTTGTTTGTCTTG+AGG 0.503939 8_1:-61247177 None:intergenic
GCTTCGTGGGTTAGAACCTA+GGG 0.504275 8_1:+61248144 Msa1205110:CDS
GTAATTATCAGTTGTGGTGG+GGG 0.506791 8_1:-61247387 None:intergenic
TTGATGCTAGAAAGAGAAGC+TGG 0.507592 8_1:+61248310 Msa1205110:CDS
GAGGTGGCGCTGACATGGCA+TGG 0.508114 8_1:+61248596 Msa1205110:exon
ATAGTAGTAGTGGATGCATA+AGG 0.510603 8_1:-61247320 None:intergenic
AGAGTAATTATCAGTTGTGG+TGG 0.511198 8_1:-61247390 None:intergenic
TGTTCCTCCGATGGTGATGC+CGG 0.512206 8_1:+61248517 Msa1205110:CDS
GAGTAATTATCAGTTGTGGT+GGG 0.513221 8_1:-61247389 None:intergenic
TTTGATCTGTGTCACCGTAT+GGG 0.514015 8_1:-61247559 None:intergenic
CGGTGGAGGAGGAGGTTGCA+TGG 0.514673 8_1:+61248400 Msa1205110:CDS
GAAGGATAAGCCGGTGGTGT+GGG 0.516813 8_1:+61248555 Msa1205110:CDS
GGAAGGATAAGCCGGTGGTG+TGG 0.518070 8_1:+61248554 Msa1205110:CDS
CGGAATATTCTTGTCGTGGA+AGG 0.518332 8_1:+61248537 Msa1205110:CDS
CTAGAAAGAGAAGCTGGAAG+AGG 0.518793 8_1:+61248316 Msa1205110:CDS
AAACAGCGTCACGGTGGAGG+AGG 0.519490 8_1:+61248389 Msa1205110:CDS
CATACACTGGCCCACACCAC+CGG 0.526670 8_1:-61248565 None:intergenic
TTGATCTGTGTCACCGTATG+GGG 0.527505 8_1:-61247558 None:intergenic
TTGTTGAGAAGGTATAAAGA+AGG 0.530989 8_1:+61248478 Msa1205110:CDS
AGAAGTTGTTAAGGTGGTGG+TGG 0.532155 8_1:-61247141 None:intergenic
ACCTCAAGGCCTCCATACAC+TGG 0.532917 8_1:-61248578 None:intergenic
TGCTTCTAAGATAGCACCGT+TGG 0.532927 8_1:-61247756 None:intergenic
TCAACAATAGTTAAAACCCT+AGG 0.537053 8_1:-61248160 None:intergenic
GCCATGTCAGCGCCACCTCA+AGG 0.538008 8_1:-61248592 None:intergenic
TGTTGAGAAGGTATAAAGAA+GGG 0.543842 8_1:+61248479 Msa1205110:CDS
TTTAGTCGCATGAACGACGC+GGG 0.545808 8_1:+61247611 Msa1205110:intron
CATCTTCCTCGTTGAATCGA+AGG 0.549319 8_1:-61247681 None:intergenic
ACGTGTCCAAACGTTGTCCA+TGG 0.550032 8_1:-61247728 None:intergenic
AGTAATTATCAGTTGTGGTG+GGG 0.552091 8_1:-61247388 None:intergenic
GAAGGAAATCGGTTCAAGGA+TGG 0.552770 8_1:+61247943 Msa1205110:CDS
TTGTGATCCTTATGAGTCAA+TGG 0.560449 8_1:+61248357 Msa1205110:CDS
ATTCAAAGTTGAAGTAATCG+TGG 0.563080 8_1:-61247424 None:intergenic
GTGGTGGTGGAGTTGAAGGA+AGG 0.565220 8_1:-61247128 None:intergenic
TGGAGTAGTGATAGTAGTAG+TGG 0.565967 8_1:-61247330 None:intergenic
GCCAGTGTATGGAGGCCTTG+AGG 0.566308 8_1:+61248577 Msa1205110:CDS
GTGAAACAGCGTCACGGTGG+AGG 0.572256 8_1:+61248386 Msa1205110:CDS
GAATATTCCGGCATCACCAT+CGG 0.580354 8_1:-61248524 None:intergenic
TTTCAAGAACAAGTAGTGAG+AGG 0.582987 8_1:+61248287 Msa1205110:CDS
AGTTCCAAGAAGTTAGTCCA+TGG 0.584447 8_1:+61247711 Msa1205110:CDS
TTACATTCGATATCCGGAGC+CGG 0.585693 8_1:+61248094 Msa1205110:CDS
ATGGACAACGTTTGGACACG+TGG 0.586613 8_1:+61247730 Msa1205110:CDS
TTCAAAGTTGAAGTAATCGT+GGG 0.586851 8_1:-61247423 None:intergenic
ATGACACAGTGTTCCTCCGA+TGG 0.587322 8_1:+61248508 Msa1205110:CDS
TTTGGACACGTGGCAGCCAA+CGG 0.587329 8_1:+61247740 Msa1205110:CDS
CTTGTCGTGGAAGGATAAGC+CGG 0.587868 8_1:+61248546 Msa1205110:CDS
AGGTGGCGCTGACATGGCAT+GGG 0.590917 8_1:+61248597 Msa1205110:exon
GTTTAGTCGCATGAACGACG+CGG 0.592117 8_1:+61247610 Msa1205110:intron
AAGTTTGGTAATTAATTTAG+GGG 0.593455 8_1:+61248730 Msa1205110:three_prime_UTR
GTGTTGTTTAGAAGAAGATG+AGG 0.594437 8_1:-61247285 None:intergenic
GAAAGAGTAATTATCAGTTG+TGG 0.594879 8_1:-61247393 None:intergenic
GCAAAGATATAAACAAATCA+CGG 0.596997 8_1:-61248123 None:intergenic
GTAGTCACCGCAGTCAGCGG+TGG 0.597985 8_1:+61247902 Msa1205110:intron
TGGTGTGGGCCAGTGTATGG+AGG 0.609272 8_1:+61248569 Msa1205110:CDS
AGTGTATGGAGGCCTTGAGG+TGG 0.614107 8_1:+61248580 Msa1205110:exon
ATGCCGGAATATTCTTGTCG+TGG 0.614564 8_1:+61248533 Msa1205110:CDS
ACCGAATCCAACAACTCATG+TGG 0.616002 8_1:+61247516 Msa1205110:CDS
AACGAGCTTAGTTCCCCATA+CGG 0.616114 8_1:+61247545 Msa1205110:CDS
GCTAGAAGTTGTTAAGGTGG+TGG 0.616229 8_1:-61247144 None:intergenic
AAGTTGAAGTAATCGTGGGA+GGG 0.628358 8_1:-61247419 None:intergenic
GCTGCTAGAAGTTGTTAAGG+TGG 0.637704 8_1:-61247147 None:intergenic
AAAGTTGAAGTAATCGTGGG+AGG 0.640378 8_1:-61247420 None:intergenic
TGAGAAGGTATAAAGAAGGG+TGG 0.652792 8_1:+61248482 Msa1205110:CDS
CAAAACCTTAACATCCGCGT+CGG 0.669594 8_1:+61247646 Msa1205110:CDS
GTCGTGGAAGGATAAGCCGG+TGG 0.674105 8_1:+61248549 Msa1205110:CDS
TATTCCGGCATCACCATCGG+AGG 0.676733 8_1:-61248521 None:intergenic
CATGTTCCTTCGATTCAACG+AGG 0.690083 8_1:+61247675 Msa1205110:CDS
TGGAGGAGGAGGTTGCATGG+TGG 0.690855 8_1:+61248403 Msa1205110:CDS
GTTGTCGGAAAATGCACGTG+CGG 0.703618 8_1:-61247486 None:intergenic
AGAGACGTGAAACAGCGTCA+CGG 0.722636 8_1:+61248380 Msa1205110:CDS
ATGCACGTGCGGTTTCAAGG+AGG 0.744530 8_1:-61247475 None:intergenic
AAGATATAAACAAATCACGG+TGG 0.755243 8_1:-61248120 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGATTTTGAATTTAAA+CGG - chr8_1:61247995-61248014 None:intergenic 10.0%
!!! AAAATGATTTTGAATTTAAA+CGG - chr8_1:61247995-61248014 None:intergenic 10.0%
!!! TATATTTTGATCAATGAAAA+AGG - chr8_1:61248709-61248728 None:intergenic 15.0%
!! TTGATCAAAATATATAAGTT+TGG + chr8_1:61248715-61248734 Msa1205110:three_prime_UTR 15.0%
!!! ATAAGTTTGGTAATTAATTT+AGG + chr8_1:61248728-61248747 Msa1205110:three_prime_UTR 15.0%
!!! TAAGTTTGGTAATTAATTTA+GGG + chr8_1:61248729-61248748 Msa1205110:three_prime_UTR 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG + chr8_1:61248785-61248804 Msa1205110:three_prime_UTR 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG + chr8_1:61248885-61248904 Msa1205110:three_prime_UTR 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG + chr8_1:61248886-61248905 Msa1205110:three_prime_UTR 15.0%
!!! TATATTTTGATCAATGAAAA+AGG - chr8_1:61248709-61248728 None:intergenic 15.0%
!! TTGATCAAAATATATAAGTT+TGG + chr8_1:61248715-61248734 Msa1205110:three_prime_UTR 15.0%
!!! ATAAGTTTGGTAATTAATTT+AGG + chr8_1:61248728-61248747 Msa1205110:three_prime_UTR 15.0%
!!! TAAGTTTGGTAATTAATTTA+GGG + chr8_1:61248729-61248748 Msa1205110:three_prime_UTR 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG + chr8_1:61248785-61248804 Msa1205110:three_prime_UTR 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG + chr8_1:61248885-61248904 Msa1205110:three_prime_UTR 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG + chr8_1:61248886-61248905 Msa1205110:three_prime_UTR 15.0%
!! TATCAATTATGTGAAGTTTA+GGG - chr8_1:61247793-61247812 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG - chr8_1:61247794-61247813 None:intergenic 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG + chr8_1:61248730-61248749 Msa1205110:three_prime_UTR 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG + chr8_1:61248803-61248822 Msa1205110:three_prime_UTR 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG + chr8_1:61248804-61248823 Msa1205110:three_prime_UTR 20.0%
!! TATCAATTATGTGAAGTTTA+GGG - chr8_1:61247793-61247812 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG - chr8_1:61247794-61247813 None:intergenic 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG + chr8_1:61248730-61248749 Msa1205110:three_prime_UTR 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG + chr8_1:61248803-61248822 Msa1205110:three_prime_UTR 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG + chr8_1:61248804-61248823 Msa1205110:three_prime_UTR 20.0%
!! CTTCAACAACTTTTATTACA+TGG + chr8_1:61247232-61247251 Msa1205110:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG - chr8_1:61248126-61248145 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG + chr8_1:61248195-61248214 Msa1205110:CDS 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG + chr8_1:61248230-61248249 Msa1205110:CDS 25.0%
!! GAGTAATTTTCACTGTTATA+TGG + chr8_1:61248680-61248699 Msa1205110:three_prime_UTR 25.0%
! AGTATAAGAGGATTGATTAA+AGG + chr8_1:61248753-61248772 Msa1205110:three_prime_UTR 25.0%
! GTATAAGAGGATTGATTAAA+GGG + chr8_1:61248754-61248773 Msa1205110:three_prime_UTR 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG + chr8_1:61248776-61248795 Msa1205110:three_prime_UTR 25.0%
!! CTTCAACAACTTTTATTACA+TGG + chr8_1:61247232-61247251 Msa1205110:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG - chr8_1:61248126-61248145 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG + chr8_1:61248195-61248214 Msa1205110:CDS 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG + chr8_1:61248230-61248249 Msa1205110:CDS 25.0%
!! GAGTAATTTTCACTGTTATA+TGG + chr8_1:61248680-61248699 Msa1205110:three_prime_UTR 25.0%
! AGTATAAGAGGATTGATTAA+AGG + chr8_1:61248753-61248772 Msa1205110:three_prime_UTR 25.0%
! GTATAAGAGGATTGATTAAA+GGG + chr8_1:61248754-61248773 Msa1205110:three_prime_UTR 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG + chr8_1:61248776-61248795 Msa1205110:three_prime_UTR 25.0%
TTGATAAGTTGTTTGTCTTG+AGG - chr8_1:61247180-61247199 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG - chr8_1:61247353-61247372 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG - chr8_1:61247396-61247415 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG - chr8_1:61247426-61247445 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG - chr8_1:61247427-61247446 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG + chr8_1:61247431-61247450 Msa1205110:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG + chr8_1:61247932-61247951 Msa1205110:CDS 30.0%
TATTAAAGAAGACGAAGCTT+TGG + chr8_1:61248051-61248070 Msa1205110:CDS 30.0%
AACTCTTTACATTCGATATC+CGG + chr8_1:61248088-61248107 Msa1205110:CDS 30.0%
AAGATATAAACAAATCACGG+TGG - chr8_1:61248123-61248142 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG + chr8_1:61248130-61248149 Msa1205110:CDS 30.0%
TGTTTATATCTTTGCTTCGT+GGG + chr8_1:61248131-61248150 Msa1205110:CDS 30.0%
TCAACAATAGTTAAAACCCT+AGG - chr8_1:61248163-61248182 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG + chr8_1:61248165-61248184 Msa1205110:CDS 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG + chr8_1:61248190-61248209 Msa1205110:CDS 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG + chr8_1:61248236-61248255 Msa1205110:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG + chr8_1:61248237-61248256 Msa1205110:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG + chr8_1:61248452-61248471 Msa1205110:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG + chr8_1:61248453-61248472 Msa1205110:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG + chr8_1:61248478-61248497 Msa1205110:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG + chr8_1:61248479-61248498 Msa1205110:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG + chr8_1:61248626-61248645 Msa1205110:three_prime_UTR 30.0%
! TTAATTTAGGGGAGTATAAG+AGG + chr8_1:61248741-61248760 Msa1205110:three_prime_UTR 30.0%
TTTACATAAGAATAGGGTTG+TGG + chr8_1:61248892-61248911 Msa1205110:three_prime_UTR 30.0%
TTGATAAGTTGTTTGTCTTG+AGG - chr8_1:61247180-61247199 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG - chr8_1:61247353-61247372 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG - chr8_1:61247396-61247415 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG - chr8_1:61247426-61247445 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG - chr8_1:61247427-61247446 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG + chr8_1:61247431-61247450 Msa1205110:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG + chr8_1:61247932-61247951 Msa1205110:CDS 30.0%
TATTAAAGAAGACGAAGCTT+TGG + chr8_1:61248051-61248070 Msa1205110:CDS 30.0%
AACTCTTTACATTCGATATC+CGG + chr8_1:61248088-61248107 Msa1205110:CDS 30.0%
AAGATATAAACAAATCACGG+TGG - chr8_1:61248123-61248142 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG + chr8_1:61248130-61248149 Msa1205110:CDS 30.0%
TGTTTATATCTTTGCTTCGT+GGG + chr8_1:61248131-61248150 Msa1205110:CDS 30.0%
TCAACAATAGTTAAAACCCT+AGG - chr8_1:61248163-61248182 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG + chr8_1:61248165-61248184 Msa1205110:CDS 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG + chr8_1:61248190-61248209 Msa1205110:CDS 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG + chr8_1:61248236-61248255 Msa1205110:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG + chr8_1:61248237-61248256 Msa1205110:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG + chr8_1:61248452-61248471 Msa1205110:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG + chr8_1:61248453-61248472 Msa1205110:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG + chr8_1:61248478-61248497 Msa1205110:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG + chr8_1:61248479-61248498 Msa1205110:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG + chr8_1:61248626-61248645 Msa1205110:three_prime_UTR 30.0%
! TTAATTTAGGGGAGTATAAG+AGG + chr8_1:61248741-61248760 Msa1205110:three_prime_UTR 30.0%
TTTACATAAGAATAGGGTTG+TGG + chr8_1:61248892-61248911 Msa1205110:three_prime_UTR 30.0%
ATTCTTCGTCTTCTTCTTGT+TGG - chr8_1:61247211-61247230 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG - chr8_1:61247288-61247307 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG - chr8_1:61247323-61247342 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG - chr8_1:61247391-61247410 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG - chr8_1:61247392-61247411 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG - chr8_1:61247393-61247412 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG + chr8_1:61247764-61247783 Msa1205110:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG + chr8_1:61247957-61247976 Msa1205110:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG + chr8_1:61247965-61247984 Msa1205110:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG + chr8_1:61248287-61248306 Msa1205110:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG + chr8_1:61248330-61248349 Msa1205110:CDS 35.0%
TTGTGATCCTTATGAGTCAA+TGG + chr8_1:61248357-61248376 Msa1205110:CDS 35.0%
ATTCTTCGTCTTCTTCTTGT+TGG - chr8_1:61247211-61247230 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG - chr8_1:61247288-61247307 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG - chr8_1:61247323-61247342 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG - chr8_1:61247391-61247410 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG - chr8_1:61247392-61247411 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG - chr8_1:61247393-61247412 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG + chr8_1:61247764-61247783 Msa1205110:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG + chr8_1:61247957-61247976 Msa1205110:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG + chr8_1:61247965-61247984 Msa1205110:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG + chr8_1:61248287-61248306 Msa1205110:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG + chr8_1:61248330-61248349 Msa1205110:CDS 35.0%
TTGTGATCCTTATGAGTCAA+TGG + chr8_1:61248357-61248376 Msa1205110:CDS 35.0%
AGAGCTGCTAGAAGTTGTTA+AGG - chr8_1:61247153-61247172 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG - chr8_1:61247333-61247352 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG - chr8_1:61247390-61247409 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG - chr8_1:61247422-61247441 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG - chr8_1:61247423-61247442 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG - chr8_1:61247504-61247523 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG - chr8_1:61247520-61247539 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG - chr8_1:61247526-61247545 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG - chr8_1:61247562-61247581 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG - chr8_1:61247563-61247582 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG + chr8_1:61247711-61247730 Msa1205110:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG - chr8_1:61247718-61247737 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG + chr8_1:61247816-61247835 Msa1205110:intron 40.0%
! TCATGAAGGAAATCGGTTCA+AGG + chr8_1:61247939-61247958 Msa1205110:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG + chr8_1:61247964-61247983 Msa1205110:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG - chr8_1:61248116-61248135 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG + chr8_1:61248204-61248223 Msa1205110:CDS 40.0%
TTGATGCTAGAAAGAGAAGC+TGG + chr8_1:61248310-61248329 Msa1205110:CDS 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG + chr8_1:61248467-61248486 Msa1205110:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG + chr8_1:61248482-61248501 Msa1205110:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG - chr8_1:61248539-61248558 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG + chr8_1:61248639-61248658 Msa1205110:three_prime_UTR 40.0%
! TTTTATTGGCACGTGCGTTT+GGG + chr8_1:61248640-61248659 Msa1205110:three_prime_UTR 40.0%
AGAGCTGCTAGAAGTTGTTA+AGG - chr8_1:61247153-61247172 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG - chr8_1:61247333-61247352 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG - chr8_1:61247390-61247409 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG - chr8_1:61247422-61247441 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG - chr8_1:61247423-61247442 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG - chr8_1:61247504-61247523 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG - chr8_1:61247520-61247539 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG - chr8_1:61247526-61247545 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG - chr8_1:61247562-61247581 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG - chr8_1:61247563-61247582 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG + chr8_1:61247711-61247730 Msa1205110:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG - chr8_1:61247718-61247737 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG + chr8_1:61247816-61247835 Msa1205110:intron 40.0%
! TCATGAAGGAAATCGGTTCA+AGG + chr8_1:61247939-61247958 Msa1205110:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG + chr8_1:61247964-61247983 Msa1205110:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG - chr8_1:61248116-61248135 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG + chr8_1:61248204-61248223 Msa1205110:CDS 40.0%
TTGATGCTAGAAAGAGAAGC+TGG + chr8_1:61248310-61248329 Msa1205110:CDS 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG + chr8_1:61248467-61248486 Msa1205110:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG + chr8_1:61248482-61248501 Msa1205110:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG - chr8_1:61248539-61248558 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG + chr8_1:61248639-61248658 Msa1205110:three_prime_UTR 40.0%
! TTTTATTGGCACGTGCGTTT+GGG + chr8_1:61248640-61248659 Msa1205110:three_prime_UTR 40.0%
! AGAAGTTGTTAAGGTGGTGG+TGG - chr8_1:61247144-61247163 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG - chr8_1:61247147-61247166 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG - chr8_1:61247150-61247169 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG + chr8_1:61247441-61247460 Msa1205110:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG - chr8_1:61247453-61247472 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG - chr8_1:61247481-61247500 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG + chr8_1:61247516-61247535 Msa1205110:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG + chr8_1:61247545-61247564 Msa1205110:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG - chr8_1:61247561-61247580 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG - chr8_1:61247645-61247664 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG + chr8_1:61247646-61247665 Msa1205110:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG - chr8_1:61247654-61247673 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG - chr8_1:61247663-61247682 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG + chr8_1:61247675-61247694 Msa1205110:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG - chr8_1:61247684-61247703 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG + chr8_1:61247722-61247741 Msa1205110:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG - chr8_1:61247759-61247778 None:intergenic 45.0%
TGACTACAGTGGTTAAACGG+AGG - chr8_1:61247889-61247908 None:intergenic 45.0%
CGGTGACTACAGTGGTTAAA+CGG - chr8_1:61247892-61247911 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG + chr8_1:61247925-61247944 Msa1205110:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG + chr8_1:61247943-61247962 Msa1205110:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG + chr8_1:61248094-61248113 Msa1205110:CDS 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG + chr8_1:61248208-61248227 Msa1205110:CDS 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG + chr8_1:61248316-61248335 Msa1205110:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG - chr8_1:61248367-61248386 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG + chr8_1:61248417-61248436 Msa1205110:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG - chr8_1:61248527-61248546 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG + chr8_1:61248533-61248552 Msa1205110:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG + chr8_1:61248537-61248556 Msa1205110:CDS 45.0%
! AGAAGTTGTTAAGGTGGTGG+TGG - chr8_1:61247144-61247163 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG - chr8_1:61247147-61247166 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG - chr8_1:61247150-61247169 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG + chr8_1:61247441-61247460 Msa1205110:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG - chr8_1:61247453-61247472 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG - chr8_1:61247481-61247500 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG + chr8_1:61247516-61247535 Msa1205110:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG + chr8_1:61247545-61247564 Msa1205110:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG - chr8_1:61247561-61247580 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG - chr8_1:61247645-61247664 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG + chr8_1:61247646-61247665 Msa1205110:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG - chr8_1:61247654-61247673 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG - chr8_1:61247663-61247682 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG + chr8_1:61247675-61247694 Msa1205110:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG - chr8_1:61247684-61247703 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG + chr8_1:61247722-61247741 Msa1205110:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG - chr8_1:61247759-61247778 None:intergenic 45.0%
TGACTACAGTGGTTAAACGG+AGG - chr8_1:61247889-61247908 None:intergenic 45.0%
CGGTGACTACAGTGGTTAAA+CGG - chr8_1:61247892-61247911 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG + chr8_1:61247925-61247944 Msa1205110:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG + chr8_1:61247943-61247962 Msa1205110:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG + chr8_1:61248094-61248113 Msa1205110:CDS 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG + chr8_1:61248208-61248227 Msa1205110:CDS 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG + chr8_1:61248316-61248335 Msa1205110:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG - chr8_1:61248367-61248386 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG + chr8_1:61248417-61248436 Msa1205110:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG - chr8_1:61248527-61248546 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG + chr8_1:61248533-61248552 Msa1205110:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG + chr8_1:61248537-61248556 Msa1205110:CDS 45.0%
GTGGAGTTGAAGGAAGGATC+AGG - chr8_1:61247125-61247144 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+AGG - chr8_1:61247135-61247154 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG - chr8_1:61247489-61247508 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG + chr8_1:61247610-61247629 Msa1205110:intron 50.0%
TTTAGTCGCATGAACGACGC+GGG + chr8_1:61247611-61247630 Msa1205110:intron 50.0%
ACGTGTCCAAACGTTGTCCA+TGG - chr8_1:61247731-61247750 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG + chr8_1:61247730-61247749 Msa1205110:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG - chr8_1:61247884-61247903 None:intergenic 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG + chr8_1:61248143-61248162 Msa1205110:CDS 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG + chr8_1:61248144-61248163 Msa1205110:CDS 50.0%
AGAGACGTGAAACAGCGTCA+CGG + chr8_1:61248380-61248399 Msa1205110:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG + chr8_1:61248508-61248527 Msa1205110:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG + chr8_1:61248546-61248565 Msa1205110:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG + chr8_1:61248649-61248668 Msa1205110:three_prime_UTR 50.0%
GTGGAGTTGAAGGAAGGATC+AGG - chr8_1:61247125-61247144 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+AGG - chr8_1:61247135-61247154 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG - chr8_1:61247489-61247508 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG + chr8_1:61247610-61247629 Msa1205110:intron 50.0%
TTTAGTCGCATGAACGACGC+GGG + chr8_1:61247611-61247630 Msa1205110:intron 50.0%
ACGTGTCCAAACGTTGTCCA+TGG - chr8_1:61247731-61247750 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG + chr8_1:61247730-61247749 Msa1205110:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG - chr8_1:61247884-61247903 None:intergenic 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG + chr8_1:61248143-61248162 Msa1205110:CDS 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG + chr8_1:61248144-61248163 Msa1205110:CDS 50.0%
AGAGACGTGAAACAGCGTCA+CGG + chr8_1:61248380-61248399 Msa1205110:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG + chr8_1:61248508-61248527 Msa1205110:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG + chr8_1:61248546-61248565 Msa1205110:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG + chr8_1:61248649-61248668 Msa1205110:three_prime_UTR 50.0%
!! GTGGTGGTGGAGTTGAAGGA+AGG - chr8_1:61247131-61247150 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG - chr8_1:61247478-61247497 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG + chr8_1:61247740-61247759 Msa1205110:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG - chr8_1:61247873-61247892 None:intergenic 55.0%
ACTGTAGTCACCGCAGTCAG+CGG + chr8_1:61247899-61247918 Msa1205110:intron 55.0%
! TGTTCCTCCGATGGTGATGC+CGG + chr8_1:61248517-61248536 Msa1205110:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG - chr8_1:61248524-61248543 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG + chr8_1:61248555-61248574 Msa1205110:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG - chr8_1:61248581-61248600 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG + chr8_1:61248580-61248599 Msa1205110:exon 55.0%
!! GTGGTGGTGGAGTTGAAGGA+AGG - chr8_1:61247131-61247150 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG - chr8_1:61247478-61247497 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG + chr8_1:61247740-61247759 Msa1205110:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG - chr8_1:61247873-61247892 None:intergenic 55.0%
ACTGTAGTCACCGCAGTCAG+CGG + chr8_1:61247899-61247918 Msa1205110:intron 55.0%
! TGTTCCTCCGATGGTGATGC+CGG + chr8_1:61248517-61248536 Msa1205110:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG - chr8_1:61248524-61248543 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG + chr8_1:61248555-61248574 Msa1205110:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG - chr8_1:61248581-61248600 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG + chr8_1:61248580-61248599 Msa1205110:exon 55.0%
GCCAACACTCCTCGAAGCGT+TGG + chr8_1:61247838-61247857 Msa1205110:intron 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG - chr8_1:61247842-61247861 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG - chr8_1:61247867-61247886 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG - chr8_1:61247868-61247887 None:intergenic 60.0%
GCTGACTGCGGTGACTACAG+TGG - chr8_1:61247900-61247919 None:intergenic 60.0%
ATCACGGTGGTTTCCGGCTC+CGG - chr8_1:61248110-61248129 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG + chr8_1:61248383-61248402 Msa1205110:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG + chr8_1:61248386-61248405 Msa1205110:CDS 60.0%
AAACAGCGTCACGGTGGAGG+AGG + chr8_1:61248389-61248408 Msa1205110:CDS 60.0%
TGGAGGAGGAGGTTGCATGG+TGG + chr8_1:61248403-61248422 Msa1205110:CDS 60.0%
AGGAGGAGGTTGCATGGTGG+TGG + chr8_1:61248406-61248425 Msa1205110:CDS 60.0%
GGAGGAGGTTGCATGGTGGT+GGG + chr8_1:61248407-61248426 Msa1205110:CDS 60.0%
GTCGTGGAAGGATAAGCCGG+TGG + chr8_1:61248549-61248568 Msa1205110:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG + chr8_1:61248554-61248573 Msa1205110:CDS 60.0%
CATACACTGGCCCACACCAC+CGG - chr8_1:61248568-61248587 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG + chr8_1:61248569-61248588 Msa1205110:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG + chr8_1:61248577-61248596 Msa1205110:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG + chr8_1:61248597-61248616 Msa1205110:exon 60.0%
GCCAACACTCCTCGAAGCGT+TGG + chr8_1:61247838-61247857 Msa1205110:intron 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG - chr8_1:61247842-61247861 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG - chr8_1:61247867-61247886 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG - chr8_1:61247868-61247887 None:intergenic 60.0%
GCTGACTGCGGTGACTACAG+TGG - chr8_1:61247900-61247919 None:intergenic 60.0%
ATCACGGTGGTTTCCGGCTC+CGG - chr8_1:61248110-61248129 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG + chr8_1:61248383-61248402 Msa1205110:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG + chr8_1:61248386-61248405 Msa1205110:CDS 60.0%
AAACAGCGTCACGGTGGAGG+AGG + chr8_1:61248389-61248408 Msa1205110:CDS 60.0%
TGGAGGAGGAGGTTGCATGG+TGG + chr8_1:61248403-61248422 Msa1205110:CDS 60.0%
AGGAGGAGGTTGCATGGTGG+TGG + chr8_1:61248406-61248425 Msa1205110:CDS 60.0%
GGAGGAGGTTGCATGGTGGT+GGG + chr8_1:61248407-61248426 Msa1205110:CDS 60.0%
GTCGTGGAAGGATAAGCCGG+TGG + chr8_1:61248549-61248568 Msa1205110:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG + chr8_1:61248554-61248573 Msa1205110:CDS 60.0%
CATACACTGGCCCACACCAC+CGG - chr8_1:61248568-61248587 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG + chr8_1:61248569-61248588 Msa1205110:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG + chr8_1:61248577-61248596 Msa1205110:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG + chr8_1:61248597-61248616 Msa1205110:exon 60.0%
AGGCGTATCATCGGAGCGGG+TGG - chr8_1:61247864-61247883 None:intergenic 65.0%
GTAGTCACCGCAGTCAGCGG+TGG + chr8_1:61247902-61247921 Msa1205110:intron 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG + chr8_1:61248400-61248419 Msa1205110:CDS 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG + chr8_1:61248566-61248585 Msa1205110:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG + chr8_1:61248591-61248610 Msa1205110:exon 65.0%
GCCATGTCAGCGCCACCTCA+AGG - chr8_1:61248595-61248614 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG + chr8_1:61248596-61248615 Msa1205110:exon 65.0%
AGGCGTATCATCGGAGCGGG+TGG - chr8_1:61247864-61247883 None:intergenic 65.0%
GTAGTCACCGCAGTCAGCGG+TGG + chr8_1:61247902-61247921 Msa1205110:intron 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG + chr8_1:61248400-61248419 Msa1205110:CDS 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG + chr8_1:61248566-61248585 Msa1205110:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG + chr8_1:61248591-61248610 Msa1205110:exon 65.0%
GCCATGTCAGCGCCACCTCA+AGG - chr8_1:61248595-61248614 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG + chr8_1:61248596-61248615 Msa1205110:exon 65.0%
AGCGGGTGGCCAACGCTTCG+AGG - chr8_1:61247850-61247869 None:intergenic 70.0%
CACCGCAGTCAGCGGTGGCT+CGG + chr8_1:61247907-61247926 Msa1205110:intron 70.0%
! CACCGAGCCACCGCTGACTG+CGG - chr8_1:61247912-61247931 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG + chr8_1:61248392-61248411 Msa1205110:CDS 70.0%
AGCGGGTGGCCAACGCTTCG+AGG - chr8_1:61247850-61247869 None:intergenic 70.0%
CACCGCAGTCAGCGGTGGCT+CGG + chr8_1:61247907-61247926 Msa1205110:intron 70.0%
! CACCGAGCCACCGCTGACTG+CGG - chr8_1:61247912-61247931 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG + chr8_1:61248392-61248411 Msa1205110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 61247080 61248931 61247080 ID=Msa1205110;Name=Msa1205110
chr8_1 mRNA 61247080 61248931 61247080 ID=Msa1205110-mRNA-1;Parent=Msa1205110;Name=Msa1205110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|0|0|3|334|460
chr8_1 exon 61247080 61247609 61247080 ID=Msa1205110-mRNA-1:exon:19846;Parent=Msa1205110-mRNA-1
chr8_1 exon 61247616 61247785 61247616 ID=Msa1205110-mRNA-1:exon:19847;Parent=Msa1205110-mRNA-1
chr8_1 exon 61247915 61248931 61247915 ID=Msa1205110-mRNA-1:exon:19848;Parent=Msa1205110-mRNA-1
chr8_1 CDS 61247080 61247609 61247080 ID=Msa1205110-mRNA-1:cds;Parent=Msa1205110-mRNA-1
chr8_1 CDS 61247616 61247785 61247616 ID=Msa1205110-mRNA-1:cds;Parent=Msa1205110-mRNA-1
chr8_1 CDS 61247915 61248597 61247915 ID=Msa1205110-mRNA-1:cds;Parent=Msa1205110-mRNA-1
chr8_1 three_prime_UTR 61248598 61248931 61248598 ID=Msa1205110-mRNA-1:three_prime_utr;Parent=Msa1205110-mRNA-1
Gene Sequence

>Msa1205110

CTTGTCAATTTTCAACAACAACAACAACAACAACAATATCAACCTGATCCTTCCTTCAACTCCACCACCACCTTAACAACTTCTAGCAGCTCTAGATCCTCAAGACAAACAACTTATCAATATTACAACCAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAACAATGATGAAGATTTATCCTCATCTTCTTCTAAACAACACTATTATACTTATCCTTATGCATCCACTACTACTATCACTACTCCAAACACAACAAACACTACTTATAATACTATCAACACCCCCACCACAACTGATAATTACTCTTTCTCACCCTCCCACGATTACTTCAACTTTGAATTCTCCGGCAACTCATGGTCACAAAACATCCTCCTTGAAACCGCACGTGCATTTTCCGACAACAACACAAACCGAATCCAACAACTCATGTGGATGCTAAACGAGCTTAGTTCCCCATACGGTGACACAGATCAAAAACTTTCTTCTTATTTTCTTCAAGCTTTTCGCATGAACGACGCGGGAGATAGAACCTACAAAACCTTAACATCCGCGTCGGAAAAAACATGTTCCTTCGATTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCAGCCAACGGTGCTATCTTAGAAGCATTAGAAGTCAGCGGTGGCTCGGTGCAAAAAGTCATGAAGGAAATCGGTTCAAGGATGGAAAAATTTGCTAGGCTCATGGGAGTGCCGTTTAAATTCAAAATCATTTTCAGTGATTTAAGAGAGTTGAATTTGTGTGATTTAGATATTAAAGAAGACGAAGCTTTGGCTATAAACTGTGTAAACTCTTTACATTCGATATCCGGAGCCGGAAACCACCGTGATTTGTTTATATCTTTGCTTCGTGGGTTAGAACCTAGGGTTTTAACTATTGTTGAAGAGGAAGCTGATTTAGAAGTTTGTTTTGGTTCGGATTTCGTGGAAGGTTTTAAAGAGTGTTTAAGATGGTTTAGGGTTTATTTTGAAGCACTTGATGAAAGTTTTTCAAGAACAAGTAGTGAGAGGTTGATGCTAGAAAGAGAAGCTGGAAGAGGTATTGTTGATTTGGTTGCTTGTGATCCTTATGAGTCAATGGAGAGACGTGAAACAGCGTCACGGTGGAGGAGGAGGTTGCATGGTGGTGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCGATGACACAGTGTTCCTCCGATGGTGATGCCGGAATATTCTTGTCGTGGAAGGATAAGCCGGTGGTGTGGGCCAGTGTATGGAGGCCTTGA
Protein sequence

>Msa1205110

LVNFQQQQQQQQYQPDPSFNSTTTLTTSSSSRSSRQTTYQYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTNTTYNTINTPTTTDNYSFSPSHDYFNFEFSGNSWSQNILLETARAFSDNNTNRIQQLMWMLNELSSPYGDTDQKLSSYFLQAFRMNDAGDRTYKTLTSASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEVSGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESMERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTQCSSDGDAGIFLSWKDKPVVWASVWRP*