AlfalfaGEDB | Msa1294900

M. sativa cultivar zhongmu-4 / Msa1294900

KEGG: -
GO: -
PFAM: PF00903.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1294900	XP_003629350.2	96.891	193	6	0	1	193	1	193	1.18e-136	390

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1294900	sp\|Q9XI31\|GLYI4_ARATH	56.376	149	58	2	12	157	8	152	1.81e-56	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1294900	A0A396GR79	96.891	193	6	0	1	193	1	193	5.62e-137	390

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa1294900	0.809553	1.787218e-50	-8.615850e-47
Msa0036430	Msa1294900	0.814900	1.217070e-51	-8.615850e-47
Msa0110970	Msa1294900	0.819233	1.292987e-52	-8.615850e-47
Msa0130570	Msa1294900	0.811639	6.331495e-51	-8.615850e-47
Msa0141100	Msa1294900	0.800632	1.316071e-48	-8.615850e-47
Msa0157290	Msa1294900	0.809055	2.286409e-50	-8.615850e-47
Msa0173990	Msa1294900	0.812944	3.285637e-51	-8.615850e-47
Msa0186890	Msa1294900	0.807242	5.563112e-50	-8.615850e-47
Msa0197930	Msa1294900	0.813409	2.597486e-51	-8.615850e-47
Msa0218780	Msa1294900	0.814186	1.751195e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1294900	MtrunA17_Chr8g0372141	96.891	193	6	0	1	193	1	193	1.08e-140	390
Msa1294900	MtrunA17_Chr5g0405171	76.923	195	42	3	1	193	14	207	6.71e-108	307
Msa1294900	MtrunA17_Chr2g0277151	63.087	149	49	2	12	160	2	144	1.50e-64	197
Msa1294900	MtrunA17_Chr4g0063501	57.639	144	57	1	12	155	4	143	1.82e-56	176
Msa1294900	MtrunA17_Chr4g0003581	53.691	149	62	2	12	157	8	152	2.73e-55	173
Msa1294900	MtrunA17_Chr4g0020201	47.183	142	73	2	14	154	35	175	1.08e-47	154
Msa1294900	MtrunA17_Chr2g0332851	49.333	150	68	3	12	157	8	153	3.17e-47	152
Msa1294900	MtrunA17_Chr2g0332841	48.667	150	69	3	12	157	8	153	1.32e-45	148
Msa1294900	MtrunA17_Chr1g0212241	44.444	135	66	3	30	161	3	131	1.87e-36	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1294900	AT1G15380.2	56.376	149	58	2	12	157	8	152	1.84e-57	179
Msa1294900	AT1G15380.1	56.376	149	58	2	12	157	8	152	1.84e-57	179
Msa1294900	AT1G80160.1	51.678	149	65	2	12	157	8	152	1.34e-54	171
Msa1294900	AT1G80160.3	51.678	149	65	2	12	157	49	193	3.99e-54	171
Msa1294900	AT2G28420.1	49.306	144	69	2	14	156	17	157	1.36e-48	156
Msa1294900	AT1G80160.2	45.217	115	56	2	57	168	27	137	1.66e-31	111

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Find 72 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGGTTGGAAGAAAT+GGG	0.458153	8_3:-52840146	Msa1294900:CDS
AAAATGGGGATTGAGGAAAT+TGG	0.400288	8_3:-52840708	Msa1294900:CDS
AAACAGTCTTCTTAAAGCTC+TGG	0.447084	8_3:+52839967	None:intergenic
AAATGAGGTTGGAAGAAATG+GGG	0.690532	8_3:-52840145	Msa1294900:CDS
AAGACTGTTTCTAACAAGTG+TGG	0.583686	8_3:-52839954	Msa1294900:CDS
AAGGGAGAATATTGGAAAAT+GGG	0.376216	8_3:-52840723	Msa1294900:exon
AATGATATATGGTTGTCCTT+GGG	0.521545	8_3:+52840334	None:intergenic
AATGGGGATGAAGTATGTTA+CGG	0.515973	8_3:-52840129	Msa1294900:CDS
ACACATGATTCAGTGAGAGA+AGG	0.601179	8_3:+52840664	None:intergenic
ACATGATTCAGTGAGAGAAG+GGG	0.696257	8_3:+52840666	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGGGAGAATATTGGAAAA+TGG	-	chr8_3:52839595-52839614	Msa1294900:three_prime_UTR	30.0%
AAGGGAGAATATTGGAAAAT+GGG	-	chr8_3:52839596-52839615	Msa1294900:three_prime_UTR	30.0%
CATTGAATTTGAAAGAGGAA+GGG	+	chr8_3:52839754-52839773	None:intergenic	30.0%
GGTAATGAAGCAAAGTATAT+AGG	+	chr8_3:52839791-52839810	None:intergenic	30.0%
AGGTTGTATAATTATGGGTT+TGG	-	chr8_3:52839892-52839911	Msa1294900:exon	30.0%
AATGATATATGGTTGTCCTT+GGG	+	chr8_3:52839988-52840007	None:intergenic	30.0%
AAAATGAGGTTGGAAGAAAT+GGG	-	chr8_3:52840173-52840192	Msa1294900:intron	30.0%
TACAGACAAAAAAAGGAAGT+TGG	+	chr8_3:52840491-52840510	None:intergenic	30.0%
CTGATCTTACAGACAAAAAA+AGG	+	chr8_3:52840498-52840517	None:intergenic	30.0%
CTGAATTGTATTGTTTGACA+AGG	-	chr8_3:52840724-52840743	Msa1294900:exon	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	52839543	52840798	52839543	ID=Msa1294900;Name=Msa1294900
chr8_3	mRNA	52839543	52840798	52839543	ID=Msa1294900-mRNA-1;Parent=Msa1294900;Name=Msa1294900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=71\|1\|1\|1\|1\|1\|3\|350\|193
chr8_3	exon	52839543	52840189	52839543	ID=Msa1294900-mRNA-1:exon:15060;Parent=Msa1294900-mRNA-1
chr8_3	exon	52840330	52840447	52840330	ID=Msa1294900-mRNA-1:exon:15059;Parent=Msa1294900-mRNA-1
chr8_3	exon	52840561	52840798	52840561	ID=Msa1294900-mRNA-1:exon:15058;Parent=Msa1294900-mRNA-1
chr8_3	five_prime_UTR	52840728	52840798	52840728	ID=Msa1294900-mRNA-1:five_prime_utr;Parent=Msa1294900-mRNA-1
chr8_3	CDS	52840561	52840727	52840561	ID=Msa1294900-mRNA-1:cds;Parent=Msa1294900-mRNA-1
chr8_3	CDS	52840330	52840447	52840330	ID=Msa1294900-mRNA-1:cds;Parent=Msa1294900-mRNA-1
chr8_3	CDS	52839893	52840189	52839893	ID=Msa1294900-mRNA-1:cds;Parent=Msa1294900-mRNA-1
chr8_3	three_prime_UTR	52839543	52839892	52839543	ID=Msa1294900-mRNA-1:three_prime_utr;Parent=Msa1294900-mRNA-1

Gene Sequence

>Msa1294900

ATGGGGATTGAGGAAATTGGCAGCTATGAAGCACCACTACCCCTTCTCTCACTGAATCATGTGTCCATATTATGCAGATCAGTGTTGGACTCTGTGAGGTTTTATGAAGAAATCTTGGGTTTTGGTCTCATCAAACGCCCTTCCTCTTTCAAATTCAATGGAGCATGGTTGTATAATTATGGGTTTGGAATACACCTGCTTGAGAATCCAAATTATGATGAATTTGATGCCCCTATGAGTGAATCACGACCCATTAATCCCAAGGACAACCATATATCATTCCAATGTACAGATGTTGGGCTAGTGAAAATGAGGTTGGAAGAAATGGGGATGAAGTATGTTACGGCTTTGGTAGAGGATGAAGGAATCAAGGTGGAGCAGGTGTTCTTCCATGACCCTGATGGATACATGATAGAACTTTGCAACTGTGAGAATATCCCAATAGTTCCCATTTCTTCTGCTTCCTGCTCCTTCAAGTCACGAGGCCAGAGCTTTAAGAAGACTGTTTCTAACAAGTGTGGATTCATGGAAAATGTTATGATGCGAAGCTTGAGCAAGGACATGATGAACTTTGCATTTTAA

Protein sequence

>Msa1294900

MGIEEIGSYEAPLPLLSLNHVSILCRSVLDSVRFYEEILGFGLIKRPSSFKFNGAWLYNYGFGIHLLENPNYDEFDAPMSESRPINPKDNHISFQCTDVGLVKMRLEEMGMKYVTALVEDEGIKVEQVFFHDPDGYMIELCNCENIPIVPISSASCSFKSRGQSFKKTVSNKCGFMENVMMRSLSKDMMNFAF*