AlfalfaGEDB | Msa1254700

M. sativa cultivar zhongmu-4 / Msa1254700

KEGG: -
GO: -
PFAM: PF00903.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1254700	XP_003629350.2	96.891	193	6	0	1	193	1	193	1.08e-136	390

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1254700	sp\|Q9XI31\|GLYI4_ARATH	57.718	149	56	2	12	157	8	152	1.85e-57	181

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1254700	A0A396GR79	96.891	193	6	0	1	193	1	193	5.15e-137	390

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004880	Msa1254700	0.806796	6.912517e-50	-8.615850e-47
Msa0017510	Msa1254700	0.816972	4.196481e-52	-8.615850e-47
Msa0036960	Msa1254700	0.834608	2.716561e-56	-8.615850e-47
Msa0051790	Msa1254700	0.808027	3.789404e-50	-8.615850e-47
Msa0078650	Msa1254700	0.809169	2.161183e-50	-8.615850e-47
Msa0095540	Msa1254700	0.829181	5.944294e-55	-8.615850e-47
Msa0607050	Msa1254700	0.806955	6.398695e-50	-8.615850e-47
Msa0609430	Msa1254700	0.823181	1.590723e-53	-8.615850e-47
Msa0611380	Msa1254700	0.841965	3.448977e-58	-8.615850e-47
Msa0628640	Msa1254700	0.818825	1.601343e-52	-8.615850e-47
Msa0631120	Msa1254700	0.858765	6.580835e-63	-8.615850e-47
Msa0666030	Msa1254700	0.833273	5.862068e-56	-8.615850e-47
Msa0669340	Msa1254700	0.844029	9.733986e-59	-8.615850e-47
Msa0684500	Msa1254700	0.836257	1.040198e-56	-8.615850e-47
Msa0690150	Msa1254700	0.812760	3.605219e-51	-8.615850e-47
Msa0692060	Msa1254700	0.805059	1.602387e-49	-8.615850e-47
Msa0716450	Msa1254700	0.848336	6.540389e-60	-8.615850e-47
Msa0717260	Msa1254700	0.849028	4.206000e-60	-8.615850e-47
Msa0750880	Msa1254700	0.811514	6.739035e-51	-8.615850e-47
Msa0758320	Msa1254700	0.848718	5.125394e-60	-8.615850e-47
Msa0775440	Msa1254700	0.810749	9.872266e-51	-8.615850e-47
Msa0799030	Msa1254700	0.817424	3.321811e-52	-8.615850e-47
Msa0799700	Msa1254700	0.805881	1.077773e-49	-8.615850e-47
Msa0812820	Msa1254700	0.812997	3.199230e-51	-8.615850e-47
Msa0818310	Msa1254700	0.808148	3.571203e-50	-8.615850e-47
Msa0837440	Msa1254700	0.815786	7.732557e-52	-8.615850e-47
Msa0837980	Msa1254700	0.849954	2.321038e-60	-8.615850e-47
Msa0126370	Msa1254700	0.805098	1.572633e-49	-8.615850e-47
Msa0141100	Msa1254700	0.863347	2.656969e-64	-8.615850e-47
Msa0157290	Msa1254700	0.816581	5.137205e-52	-8.615850e-47
Msa0173990	Msa1254700	0.807200	5.676071e-50	-8.615850e-47
Msa0191040	Msa1254700	0.821425	4.065278e-53	-8.615850e-47
Msa0197930	Msa1254700	0.808232	3.426613e-50	-8.615850e-47
Msa0220300	Msa1254700	0.825658	4.156474e-54	-8.615850e-47
Msa0225600	Msa1254700	0.844870	5.783458e-59	-8.615850e-47
Msa0233340	Msa1254700	0.821462	3.986131e-53	-8.615850e-47
Msa1254700	Msa1255040	-0.808204	3.473987e-50	-8.615850e-47
Msa1254700	Msa1255280	0.823031	1.724283e-53	-8.615850e-47
Msa1254700	Msa1266960	0.817027	4.080396e-52	-8.615850e-47
Msa1254700	Msa1291870	0.811812	5.804553e-51	-8.615850e-47
Msa1254700	Msa1294900	0.842302	2.809214e-58	-8.615850e-47
Msa1254700	Msa1300870	0.813666	2.280939e-51	-8.615850e-47
Msa1254700	Msa1353060	0.808607	2.850512e-50	-8.615850e-47
Msa1254700	Msa1397250	0.843861	1.079914e-58	-8.615850e-47
Msa1254700	Msa1399560	0.814888	1.224592e-51	-8.615850e-47
Msa1254700	Msa1401150	0.844009	9.858031e-59	-8.615850e-47
Msa1254700	Msa1430240	0.804656	1.945628e-49	-8.615850e-47
Msa1254700	Msa1440340	0.808900	2.466927e-50	-8.615850e-47
Msa1254700	Msa1443840	0.826337	2.867200e-54	-8.615850e-47
Msa1254700	Msa1449730	0.809217	2.110579e-50	-8.615850e-47
Msa0374850	Msa1254700	0.863439	2.488318e-64	-8.615850e-47
Msa0375090	Msa1254700	0.859459	4.075784e-63	-8.615850e-47
Msa0385580	Msa1254700	0.801352	9.377717e-49	-8.615850e-47
Msa0436050	Msa1254700	0.802162	6.395542e-49	-8.615850e-47
Msa0470340	Msa1254700	0.852635	4.054949e-61	-8.615850e-47
Msa0481110	Msa1254700	0.803065	4.163427e-49	-8.615850e-47
Msa1002620	Msa1254700	0.819919	9.018722e-53	-8.615850e-47
Msa1010110	Msa1254700	0.803885	2.815522e-49	-8.615850e-47
Msa1013400	Msa1254700	0.831097	2.024698e-55	-8.615850e-47
Msa1033560	Msa1254700	0.802913	4.476405e-49	-8.615850e-47
Msa1040400	Msa1254700	0.816400	5.638648e-52	-8.615850e-47
Msa1083150	Msa1254700	0.801986	6.949721e-49	-8.615850e-47
Msa1093530	Msa1254700	0.817453	3.271943e-52	-8.615850e-47
Msa0251240	Msa1254700	0.812148	4.905779e-51	-8.615850e-47
Msa0266450	Msa1254700	0.849693	2.744373e-60	-8.615850e-47
Msa0300180	Msa1254700	0.805791	1.125401e-49	-8.615850e-47
Msa0311690	Msa1254700	0.811564	6.574311e-51	-8.615850e-47
Msa0312650	Msa1254700	0.812481	4.148888e-51	-8.615850e-47
Msa0315250	Msa1254700	0.807914	4.004987e-50	-8.615850e-47
Msa0317280	Msa1254700	0.818456	1.941612e-52	-8.615850e-47
Msa0317340	Msa1254700	0.805255	1.458398e-49	-8.615850e-47
Msa0334500	Msa1254700	0.800208	1.605602e-48	-8.615850e-47
Msa0337540	Msa1254700	0.829509	4.946790e-55	-8.615850e-47
Msa1113850	Msa1254700	0.807272	5.481230e-50	-8.615850e-47
Msa1127890	Msa1254700	0.824861	6.416383e-54	-8.615850e-47
Msa1160400	Msa1254700	0.806707	7.216856e-50	-8.615850e-47
Msa1172450	Msa1254700	0.811548	6.625133e-51	-8.615850e-47
Msa1172670	Msa1254700	0.823481	1.353256e-53	-8.615850e-47
Msa1179460	Msa1254700	0.819028	1.439881e-52	-8.615850e-47
Msa1197590	Msa1254700	0.827660	1.383465e-54	-8.615850e-47
Msa1201890	Msa1254700	0.899852	1.313900e-77	-8.615850e-47
Msa1203000	Msa1254700	0.844810	6.002208e-59	-8.615850e-47
Msa1205960	Msa1254700	0.825318	5.002920e-54	-8.615850e-47
Msa1207270	Msa1254700	0.811009	8.674650e-51	-8.615850e-47
Msa1217940	Msa1254700	0.816313	5.897801e-52	-8.615850e-47
Msa1218480	Msa1254700	0.816094	6.600642e-52	-8.615850e-47
Msa1218600	Msa1254700	0.825533	4.450756e-54	-8.615850e-47
Msa1219260	Msa1254700	0.813598	2.360810e-51	-8.615850e-47
Msa0503580	Msa1254700	0.806487	8.034077e-50	-8.615850e-47
Msa0523270	Msa1254700	0.811533	6.674534e-51	-8.615850e-47
Msa0527550	Msa1254700	0.814289	1.662185e-51	-8.615850e-47
Msa0531430	Msa1254700	0.853732	1.967122e-61	-8.615850e-47
Msa0534570	Msa1254700	0.809141	2.191023e-50	-8.615850e-47
Msa0534590	Msa1254700	0.857558	1.503846e-62	-8.615850e-47
Msa0548620	Msa1254700	0.808054	3.738944e-50	-8.615850e-47
Msa0551890	Msa1254700	0.802758	4.819168e-49	-8.615850e-47
Msa0590800	Msa1254700	0.841489	4.607239e-58	-8.615850e-47
Msa0601290	Msa1254700	0.812322	4.495274e-51	-8.615850e-47
Msa0853320	Msa1254700	0.826832	2.184226e-54	-8.615850e-47
Msa0858770	Msa1254700	0.805018	1.634145e-49	-8.615850e-47
Msa0880140	Msa1254700	0.814755	1.310958e-51	-8.615850e-47
Msa0880710	Msa1254700	0.808690	2.736391e-50	-8.615850e-47
Msa0902760	Msa1254700	0.817539	3.129213e-52	-8.615850e-47
Msa0968590	Msa1254700	0.818760	1.656934e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1254700	MtrunA17_Chr8g0372141	96.891	193	6	0	1	193	1	193	9.91e-141	390
Msa1254700	MtrunA17_Chr5g0405171	78.462	195	39	3	1	193	14	207	7.34e-110	312
Msa1254700	MtrunA17_Chr2g0277151	63.514	148	48	2	12	159	2	143	2.74e-64	196
Msa1254700	MtrunA17_Chr4g0063501	57.639	144	57	1	12	155	4	143	2.88e-56	175
Msa1254700	MtrunA17_Chr4g0003581	54.362	149	61	2	12	157	8	152	2.25e-55	173
Msa1254700	MtrunA17_Chr4g0020201	47.887	142	72	2	14	154	35	175	1.20e-47	154
Msa1254700	MtrunA17_Chr2g0332851	49.333	150	68	3	12	157	8	153	4.90e-47	152
Msa1254700	MtrunA17_Chr2g0332841	48.667	150	69	3	12	157	8	153	2.04e-45	147
Msa1254700	MtrunA17_Chr1g0212241	44.444	135	66	3	30	161	3	131	3.96e-36	123

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1254700	AT1G15380.2	57.718	149	56	2	12	157	8	152	1.88e-58	181
Msa1254700	AT1G15380.1	57.718	149	56	2	12	157	8	152	1.88e-58	181
Msa1254700	AT1G80160.1	52.349	149	64	2	12	157	8	152	1.28e-54	171
Msa1254700	AT1G80160.3	52.349	149	64	2	12	157	49	193	3.62e-54	171
Msa1254700	AT2G28420.1	50.000	144	68	2	14	156	17	157	6.37e-49	157
Msa1254700	AT1G80160.2	48.077	104	47	2	57	157	27	126	1.74e-31	111

Find 73 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCATCAAATTCATCATAATT+TGG	0.184282	8_2:+52826378	None:intergenic
TCGTGTAGGTTGTATAATTA+TGG	0.197724	8_2:-52826426	Msa1254700:intron
ATGGTTGTCCTTGGGATTAA+TGG	0.258018	8_2:+52826335	None:intergenic
TATGAAGAAGTCTTGGGTTT+TGG	0.266509	8_2:-52826596	Msa1254700:CDS
TTCTGCTTCCTGCTCTTTCA+AGG	0.282455	8_2:-52826040	Msa1254700:CDS
TTATTCATATTGTTGAAATA+AGG	0.292446	8_2:-52825912	Msa1254700:three_prime_UTR
ATTTAGTGGCTGGGTATATA+TGG	0.299391	8_2:+52825577	None:intergenic
CGTGTAGGTTGTATAATTAT+GGG	0.311128	8_2:-52826425	Msa1254700:intron
TTCTAACAAGTGTGGGTTCA+TGG	0.316320	8_2:-52825989	Msa1254700:CDS
CACGATATACAACATAGTTT+TGG	0.316398	8_2:+52825775	None:intergenic
TAATTACTTGGAATGATATA+TGG	0.320663	8_2:+52826316	None:intergenic
GCAGAAGAAATGGGAACTAT+TGG	0.335608	8_2:+52826057	None:intergenic
TAAGGGAGAACATTGGAAAA+TGG	0.346199	8_2:-52826717	Msa1254700:exon
ATGGGTCGTGATTCACTCAT+AGG	0.351235	8_2:+52826354	None:intergenic
GAAAATGAGGTTGGAAGAAA+TGG	0.352191	8_2:-52826190	Msa1254700:CDS
TCAAACTATACAATTTATAT+AGG	0.356737	8_2:+52825644	None:intergenic
CAACACTGATCTGCACAATA+TGG	0.369792	8_2:+52826634	None:intergenic
CCTTCCTCTTTCAAATTCAA+TGG	0.370841	8_2:-52826560	Msa1254700:CDS
AGAGCAGGAAGCAGAAGAAA+TGG	0.381171	8_2:+52826047	None:intergenic
AAGGGAGAACATTGGAAAAT+GGG	0.393609	8_2:-52826716	Msa1254700:exon
AAAATGGGGATTGAGGAAAT+TGG	0.400288	8_2:-52826701	Msa1254700:CDS
TGGTTGTCCTTGGGATTAAT+GGG	0.407514	8_2:+52826336	None:intergenic
CAGAAGAAATGGGAACTATT+GGG	0.429676	8_2:+52826058	None:intergenic
AGGTTGTATAATTATGGGTT+TGG	0.430257	8_2:-52826420	Msa1254700:CDS
GAGGTTCTATGAAGAAGTCT+TGG	0.431037	8_2:-52826603	Msa1254700:CDS
AGTTCTATCATGTATCCATC+AGG	0.435736	8_2:+52826099	None:intergenic
GATGAAGTATGTTACGGCTT+TGG	0.445021	8_2:-52826166	Msa1254700:CDS
AAACAGTCTTCTTAAAGCTC+TGG	0.447084	8_2:+52826010	None:intergenic
GAATGATATATGGTTGTCCT+TGG	0.451197	8_2:+52826326	None:intergenic
AAAATGAGGTTGGAAGAAAT+GGG	0.458153	8_2:-52826189	Msa1254700:CDS
AGGTTCTATGAAGAAGTCTT+GGG	0.458934	8_2:-52826602	Msa1254700:CDS
TTGTGCAGTGTACAGATGTT+GGG	0.460233	8_2:-52826218	Msa1254700:intron
TGCTCCATTGAATTTGAAAG+AGG	0.466642	8_2:+52826556	None:intergenic
CACATGATTCAGTGAGAGAA+GGG	0.472092	8_2:+52826658	None:intergenic
TTTGTGCAGTGTACAGATGT+TGG	0.472216	8_2:-52826219	Msa1254700:intron
GAGCAGGAAGCAGAAGAAAT+GGG	0.476522	8_2:+52826048	None:intergenic
CTGAGTGAAGAAGTGTCCTA+AGG	0.490013	8_2:-52826735	Msa1254700:five_prime_UTR
GTATGTTACGGCTTTGGTAG+AGG	0.491758	8_2:-52826160	Msa1254700:CDS
TGAAGGAATCAAGGTGGAGC+AGG	0.491848	8_2:-52826136	Msa1254700:CDS
TGGGTCGTGATTCACTCATA+GGG	0.496984	8_2:+52826355	None:intergenic
AATGGGGATGAAGTATGTTA+CGG	0.515973	8_2:-52826172	Msa1254700:CDS
TGTTCTTCAAGACAAGGAAA+AGG	0.517132	8_2:-52825836	Msa1254700:three_prime_UTR
TCATGTATCCATCAGGGTCA+TGG	0.518219	8_2:+52826106	None:intergenic
CCATTGAATTTGAAAGAGGA+AGG	0.520942	8_2:+52826560	None:intergenic
AATGATATATGGTTGTCCTT+GGG	0.521545	8_2:+52826327	None:intergenic
GCCTCGTGCCTTGAAAGAGC+AGG	0.526263	8_2:+52826032	None:intergenic
ACGGCTTTGGTAGAGGATGA+AGG	0.527027	8_2:-52826153	Msa1254700:CDS
CTTTCAAATTCAATGGAGCA+TGG	0.540814	8_2:-52826553	Msa1254700:intron
TGAGTGAAGAAGTGTCCTAA+GGG	0.543669	8_2:-52826734	Msa1254700:five_prime_UTR
TTCAGTGAGAGAAGGGGTAG+TGG	0.543925	8_2:+52826665	None:intergenic
TGGGCTAGTGAAAATGAGGT+TGG	0.545299	8_2:-52826199	Msa1254700:CDS
GGTAGAGGATGAAGGAATCA+AGG	0.549754	8_2:-52826145	Msa1254700:CDS
ACATTGGAAAATGGGGATTG+AGG	0.550869	8_2:-52826708	Msa1254700:exon
GTGTTCTTCCATGACCCTGA+TGG	0.553401	8_2:-52826114	Msa1254700:CDS
AAGACTGTTTCTAACAAGTG+TGG	0.559960	8_2:-52825997	Msa1254700:CDS
AGACTGTTTCTAACAAGTGT+GGG	0.576406	8_2:-52825996	Msa1254700:CDS
GATCAGTGTTGGACTCTATG+AGG	0.578559	8_2:-52826622	Msa1254700:CDS
AGTGTTTGTTCTTCAAGACA+AGG	0.586875	8_2:-52825842	Msa1254700:three_prime_UTR
TCCTGCTCTTTCAAGGCACG+AGG	0.591048	8_2:-52826033	Msa1254700:CDS
AGGGAGAACATTGGAAAATG+GGG	0.597326	8_2:-52826715	Msa1254700:exon
ACACATGATTCAGTGAGAGA+AGG	0.601179	8_2:+52826657	None:intergenic
CATATTGTGCAGATCAGTGT+TGG	0.607627	8_2:-52826633	Msa1254700:CDS
AGTGTCCTAAGGGAGAACAT+TGG	0.625628	8_2:-52826724	Msa1254700:five_prime_UTR
GTTCTATCATGTATCCATCA+GGG	0.630489	8_2:+52826100	None:intergenic
CATTGAATTTGAAAGAGGAA+GGG	0.632398	8_2:+52826561	None:intergenic
TATGATGCGAAGCTTGAGCA+TGG	0.640468	8_2:-52825959	Msa1254700:CDS
ATCACGACCCATTAATCCCA+AGG	0.645670	8_2:-52826343	Msa1254700:CDS
ATGTTGGGCTAGTGAAAATG+AGG	0.654745	8_2:-52826203	Msa1254700:CDS
GGGTCGTGATTCACTCATAG+GGG	0.689430	8_2:+52826356	None:intergenic
AAATGAGGTTGGAAGAAATG+GGG	0.690532	8_2:-52826188	Msa1254700:CDS
ATAAATTGTATAGTTTGACA+AGG	0.690700	8_2:-52825639	Msa1254700:three_prime_UTR
ACATGATTCAGTGAGAGAAG+GGG	0.696257	8_2:+52826659	None:intergenic
AGAGGATGAAGGAATCAAGG+TGG	0.720837	8_2:-52826142	Msa1254700:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAGTTTCATAAAGAAAA+TGG	+	chr8_2:52825857-52825876	None:intergenic	15.0%
!!!	AAACTTTATATCCATTATTT+TGG	-	chr8_2:52825868-52825887	Msa1254700:three_prime_UTR	15.0%
!!	TTATTCATATTGTTGAAATA+AGG	-	chr8_2:52826445-52826464	Msa1254700:intron	15.0%
!!	TCAAACTATACAATTTATAT+AGG	+	chr8_2:52826716-52826735	None:intergenic	15.0%
!!	TACCAAAAAACTTATTAAAT+AGG	-	chr8_2:52826752-52826771	Msa1254700:five_prime_UTR	15.0%
!!	ATAAAGTTTCATAAAGAAAA+TGG	+	chr8_2:52825857-52825876	None:intergenic	15.0%
!!!	AAACTTTATATCCATTATTT+TGG	-	chr8_2:52825868-52825887	Msa1254700:three_prime_UTR	15.0%
!!	TTATTCATATTGTTGAAATA+AGG	-	chr8_2:52826445-52826464	Msa1254700:intron	15.0%
!!	TCAAACTATACAATTTATAT+AGG	+	chr8_2:52826716-52826735	None:intergenic	15.0%
!!	TACCAAAAAACTTATTAAAT+AGG	-	chr8_2:52826752-52826771	Msa1254700:five_prime_UTR	15.0%
!!	TATTTGTTCAACCAAAATAA+TGG	+	chr8_2:52825882-52825901	None:intergenic	20.0%
!!	TAATTACTTGGAATGATATA+TGG	+	chr8_2:52826044-52826063	None:intergenic	20.0%
!!!	TTACTAAAAGTGTTTCAATT+TGG	-	chr8_2:52826114-52826133	Msa1254700:CDS	20.0%
!!!	ACTTGTAACAAATTTTTAAC+AGG	-	chr8_2:52826646-52826665	Msa1254700:CDS	20.0%
!!!	CTTGTAACAAATTTTTAACA+GGG	-	chr8_2:52826647-52826666	Msa1254700:CDS	20.0%
!!!	TTGTAACAAATTTTTAACAG+GGG	-	chr8_2:52826648-52826667	Msa1254700:CDS	20.0%
!!	ATAAATTGTATAGTTTGACA+AGG	-	chr8_2:52826718-52826737	Msa1254700:exon	20.0%
!!!	CACCTATTTAATAAGTTTTT+TGG	+	chr8_2:52826757-52826776	None:intergenic	20.0%
!!	CAAAAAACTTATTAAATAGG+TGG	-	chr8_2:52826755-52826774	Msa1254700:five_prime_UTR	20.0%
!!	TATTTGTTCAACCAAAATAA+TGG	+	chr8_2:52825882-52825901	None:intergenic	20.0%
!!	TAATTACTTGGAATGATATA+TGG	+	chr8_2:52826044-52826063	None:intergenic	20.0%
!!!	TTACTAAAAGTGTTTCAATT+TGG	-	chr8_2:52826114-52826133	Msa1254700:CDS	20.0%
!!!	ACTTGTAACAAATTTTTAAC+AGG	-	chr8_2:52826646-52826665	Msa1254700:CDS	20.0%
!!!	CTTGTAACAAATTTTTAACA+GGG	-	chr8_2:52826647-52826666	Msa1254700:CDS	20.0%
!!!	TTGTAACAAATTTTTAACAG+GGG	-	chr8_2:52826648-52826667	Msa1254700:CDS	20.0%
!!	ATAAATTGTATAGTTTGACA+AGG	-	chr8_2:52826718-52826737	Msa1254700:exon	20.0%
!!!	CACCTATTTAATAAGTTTTT+TGG	+	chr8_2:52826757-52826776	None:intergenic	20.0%
!!	CAAAAAACTTATTAAATAGG+TGG	-	chr8_2:52826755-52826774	Msa1254700:five_prime_UTR	20.0%
!	GGTAATAAAGCAAAGTATAT+AGG	+	chr8_2:52825836-52825855	None:intergenic	25.0%
!	ACACGAAACAAAACAAAAAA+TGG	+	chr8_2:52825917-52825936	None:intergenic	25.0%
!!!	TTTTTTGTTTTGTTTCGTGT+AGG	-	chr8_2:52825917-52825936	Msa1254700:exon	25.0%
!	GCATCAAATTCATCATAATT+TGG	+	chr8_2:52825982-52826001	None:intergenic	25.0%
!!!	TGTTATTTTCTTCATTCGTA+GGG	+	chr8_2:52826692-52826711	None:intergenic	25.0%
!	GGTAATAAAGCAAAGTATAT+AGG	+	chr8_2:52825836-52825855	None:intergenic	25.0%
!	ACACGAAACAAAACAAAAAA+TGG	+	chr8_2:52825917-52825936	None:intergenic	25.0%
!!!	TTTTTTGTTTTGTTTCGTGT+AGG	-	chr8_2:52825917-52825936	Msa1254700:exon	25.0%
!	GCATCAAATTCATCATAATT+TGG	+	chr8_2:52825982-52826001	None:intergenic	25.0%
!!!	TGTTATTTTCTTCATTCGTA+GGG	+	chr8_2:52826692-52826711	None:intergenic	25.0%
!!!	GTTTTTTTTACGTGTTAGCT+TGG	+	chr8_2:52825595-52825614	None:intergenic	30.0%
	CATTGAATTTGAAAGAGGAA+GGG	+	chr8_2:52825799-52825818	None:intergenic	30.0%
	TCGTGTAGGTTGTATAATTA+TGG	-	chr8_2:52825931-52825950	Msa1254700:exon	30.0%
	CGTGTAGGTTGTATAATTAT+GGG	-	chr8_2:52825932-52825951	Msa1254700:exon	30.0%
	AGGTTGTATAATTATGGGTT+TGG	-	chr8_2:52825937-52825956	Msa1254700:CDS	30.0%
	AATGATATATGGTTGTCCTT+GGG	+	chr8_2:52826033-52826052	None:intergenic	30.0%
!	ACTAGAAATTTAGAATGCAC+TGG	+	chr8_2:52826068-52826087	None:intergenic	30.0%
	AAAATGAGGTTGGAAGAAAT+GGG	-	chr8_2:52826168-52826187	Msa1254700:CDS	30.0%
	CTTATCTTACAGACAAAAAG+AGG	+	chr8_2:52826492-52826511	None:intergenic	30.0%
!	CTCTTTTTGTCTGTAAGATA+AGG	-	chr8_2:52826490-52826509	Msa1254700:intron	30.0%
!	CACGATATACAACATAGTTT+TGG	+	chr8_2:52826585-52826604	None:intergenic	30.0%
!!!	CTGTTATTTTCTTCATTCGT+AGG	+	chr8_2:52826693-52826712	None:intergenic	30.0%
!!!	GTTTTTTTTACGTGTTAGCT+TGG	+	chr8_2:52825595-52825614	None:intergenic	30.0%
	CATTGAATTTGAAAGAGGAA+GGG	+	chr8_2:52825799-52825818	None:intergenic	30.0%
	TCGTGTAGGTTGTATAATTA+TGG	-	chr8_2:52825931-52825950	Msa1254700:exon	30.0%
	CGTGTAGGTTGTATAATTAT+GGG	-	chr8_2:52825932-52825951	Msa1254700:exon	30.0%
	AGGTTGTATAATTATGGGTT+TGG	-	chr8_2:52825937-52825956	Msa1254700:CDS	30.0%
	AATGATATATGGTTGTCCTT+GGG	+	chr8_2:52826033-52826052	None:intergenic	30.0%
!	ACTAGAAATTTAGAATGCAC+TGG	+	chr8_2:52826068-52826087	None:intergenic	30.0%
	AAAATGAGGTTGGAAGAAAT+GGG	-	chr8_2:52826168-52826187	Msa1254700:CDS	30.0%
	CTTATCTTACAGACAAAAAG+AGG	+	chr8_2:52826492-52826511	None:intergenic	30.0%
!	CTCTTTTTGTCTGTAAGATA+AGG	-	chr8_2:52826490-52826509	Msa1254700:intron	30.0%
!	CACGATATACAACATAGTTT+TGG	+	chr8_2:52826585-52826604	None:intergenic	30.0%
!!!	CTGTTATTTTCTTCATTCGT+AGG	+	chr8_2:52826693-52826712	None:intergenic	30.0%
!	ATTTTCCAATGTTCTCCCTT+AGG	+	chr8_2:52825641-52825660	None:intergenic	35.0%
	TAAGGGAGAACATTGGAAAA+TGG	-	chr8_2:52825640-52825659	Msa1254700:three_prime_UTR	35.0%
	AAGGGAGAACATTGGAAAAT+GGG	-	chr8_2:52825641-52825660	Msa1254700:three_prime_UTR	35.0%
	AAAATGGGGATTGAGGAAAT+TGG	-	chr8_2:52825656-52825675	Msa1254700:three_prime_UTR	35.0%
	AGGTTCTATGAAGAAGTCTT+GGG	-	chr8_2:52825755-52825774	Msa1254700:three_prime_UTR	35.0%
!	TATGAAGAAGTCTTGGGTTT+TGG	-	chr8_2:52825761-52825780	Msa1254700:three_prime_UTR	35.0%
	CCATTGAATTTGAAAGAGGA+AGG	+	chr8_2:52825800-52825819	None:intergenic	35.0%
	CCTTCCTCTTTCAAATTCAA+TGG	-	chr8_2:52825797-52825816	Msa1254700:three_prime_UTR	35.0%
	TGCTCCATTGAATTTGAAAG+AGG	+	chr8_2:52825804-52825823	None:intergenic	35.0%
	CTTTCAAATTCAATGGAGCA+TGG	-	chr8_2:52825804-52825823	Msa1254700:three_prime_UTR	35.0%
	GAATGATATATGGTTGTCCT+TGG	+	chr8_2:52826034-52826053	None:intergenic	35.0%
!!	GAATGCACTGGTTAATTACT+TGG	+	chr8_2:52826056-52826075	None:intergenic	35.0%
	GAAAATGAGGTTGGAAGAAA+TGG	-	chr8_2:52826167-52826186	Msa1254700:CDS	35.0%
	AAATGAGGTTGGAAGAAATG+GGG	-	chr8_2:52826169-52826188	Msa1254700:CDS	35.0%
	AATGGGGATGAAGTATGTTA+CGG	-	chr8_2:52826185-52826204	Msa1254700:CDS	35.0%
	GTTCTATCATGTATCCATCA+GGG	+	chr8_2:52826260-52826279	None:intergenic	35.0%
	AGTTCTATCATGTATCCATC+AGG	+	chr8_2:52826261-52826280	None:intergenic	35.0%
	CAGAAGAAATGGGAACTATT+GGG	+	chr8_2:52826302-52826321	None:intergenic	35.0%
	AAACAGTCTTCTTAAAGCTC+TGG	+	chr8_2:52826350-52826369	None:intergenic	35.0%
!!	AAGACTGTTTCTAACAAGTG+TGG	-	chr8_2:52826360-52826379	Msa1254700:CDS	35.0%
!!	AGACTGTTTCTAACAAGTGT+GGG	-	chr8_2:52826361-52826380	Msa1254700:CDS	35.0%
	AGTGTTTGTTCTTCAAGACA+AGG	-	chr8_2:52826515-52826534	Msa1254700:intron	35.0%
	TGTTCTTCAAGACAAGGAAA+AGG	-	chr8_2:52826521-52826540	Msa1254700:intron	35.0%
!	ATTTTCCAATGTTCTCCCTT+AGG	+	chr8_2:52825641-52825660	None:intergenic	35.0%
	TAAGGGAGAACATTGGAAAA+TGG	-	chr8_2:52825640-52825659	Msa1254700:three_prime_UTR	35.0%
	AAGGGAGAACATTGGAAAAT+GGG	-	chr8_2:52825641-52825660	Msa1254700:three_prime_UTR	35.0%
	AAAATGGGGATTGAGGAAAT+TGG	-	chr8_2:52825656-52825675	Msa1254700:three_prime_UTR	35.0%
	AGGTTCTATGAAGAAGTCTT+GGG	-	chr8_2:52825755-52825774	Msa1254700:three_prime_UTR	35.0%
!	TATGAAGAAGTCTTGGGTTT+TGG	-	chr8_2:52825761-52825780	Msa1254700:three_prime_UTR	35.0%
	CCATTGAATTTGAAAGAGGA+AGG	+	chr8_2:52825800-52825819	None:intergenic	35.0%
	CCTTCCTCTTTCAAATTCAA+TGG	-	chr8_2:52825797-52825816	Msa1254700:three_prime_UTR	35.0%
	TGCTCCATTGAATTTGAAAG+AGG	+	chr8_2:52825804-52825823	None:intergenic	35.0%
	CTTTCAAATTCAATGGAGCA+TGG	-	chr8_2:52825804-52825823	Msa1254700:three_prime_UTR	35.0%
	GAATGATATATGGTTGTCCT+TGG	+	chr8_2:52826034-52826053	None:intergenic	35.0%
!!	GAATGCACTGGTTAATTACT+TGG	+	chr8_2:52826056-52826075	None:intergenic	35.0%
	GAAAATGAGGTTGGAAGAAA+TGG	-	chr8_2:52826167-52826186	Msa1254700:CDS	35.0%
	AAATGAGGTTGGAAGAAATG+GGG	-	chr8_2:52826169-52826188	Msa1254700:CDS	35.0%
	AATGGGGATGAAGTATGTTA+CGG	-	chr8_2:52826185-52826204	Msa1254700:CDS	35.0%
	GTTCTATCATGTATCCATCA+GGG	+	chr8_2:52826260-52826279	None:intergenic	35.0%
	AGTTCTATCATGTATCCATC+AGG	+	chr8_2:52826261-52826280	None:intergenic	35.0%
	CAGAAGAAATGGGAACTATT+GGG	+	chr8_2:52826302-52826321	None:intergenic	35.0%
	AAACAGTCTTCTTAAAGCTC+TGG	+	chr8_2:52826350-52826369	None:intergenic	35.0%
!!	AAGACTGTTTCTAACAAGTG+TGG	-	chr8_2:52826360-52826379	Msa1254700:CDS	35.0%
!!	AGACTGTTTCTAACAAGTGT+GGG	-	chr8_2:52826361-52826380	Msa1254700:CDS	35.0%
	AGTGTTTGTTCTTCAAGACA+AGG	-	chr8_2:52826515-52826534	Msa1254700:intron	35.0%
	TGTTCTTCAAGACAAGGAAA+AGG	-	chr8_2:52826521-52826540	Msa1254700:intron	35.0%
!!	TGAGTGAAGAAGTGTCCTAA+GGG	-	chr8_2:52825623-52825642	Msa1254700:three_prime_UTR	40.0%
	AGGGAGAACATTGGAAAATG+GGG	-	chr8_2:52825642-52825661	Msa1254700:three_prime_UTR	40.0%
	ACATTGGAAAATGGGGATTG+AGG	-	chr8_2:52825649-52825668	Msa1254700:three_prime_UTR	40.0%
	ACATGATTCAGTGAGAGAAG+GGG	+	chr8_2:52825701-52825720	None:intergenic	40.0%
	CACATGATTCAGTGAGAGAA+GGG	+	chr8_2:52825702-52825721	None:intergenic	40.0%
	ACACATGATTCAGTGAGAGA+AGG	+	chr8_2:52825703-52825722	None:intergenic	40.0%
	CAACACTGATCTGCACAATA+TGG	+	chr8_2:52825726-52825745	None:intergenic	40.0%
	CATATTGTGCAGATCAGTGT+TGG	-	chr8_2:52825724-52825743	Msa1254700:three_prime_UTR	40.0%
	GAGGTTCTATGAAGAAGTCT+TGG	-	chr8_2:52825754-52825773	Msa1254700:three_prime_UTR	40.0%
	TGGTTGTCCTTGGGATTAAT+GGG	+	chr8_2:52826024-52826043	None:intergenic	40.0%
	ATGGTTGTCCTTGGGATTAA+TGG	+	chr8_2:52826025-52826044	None:intergenic	40.0%
	TTTGTGCAGTGTACAGATGT+TGG	-	chr8_2:52826138-52826157	Msa1254700:CDS	40.0%
	TTGTGCAGTGTACAGATGTT+GGG	-	chr8_2:52826139-52826158	Msa1254700:CDS	40.0%
!!	ATGTTGGGCTAGTGAAAATG+AGG	-	chr8_2:52826154-52826173	Msa1254700:CDS	40.0%
	GATGAAGTATGTTACGGCTT+TGG	-	chr8_2:52826191-52826210	Msa1254700:CDS	40.0%
	GCAGAAGAAATGGGAACTAT+TGG	+	chr8_2:52826303-52826322	None:intergenic	40.0%
	TTCTAACAAGTGTGGGTTCA+TGG	-	chr8_2:52826368-52826387	Msa1254700:CDS	40.0%
!!	TGAGTGAAGAAGTGTCCTAA+GGG	-	chr8_2:52825623-52825642	Msa1254700:three_prime_UTR	40.0%
	AGGGAGAACATTGGAAAATG+GGG	-	chr8_2:52825642-52825661	Msa1254700:three_prime_UTR	40.0%
	ACATTGGAAAATGGGGATTG+AGG	-	chr8_2:52825649-52825668	Msa1254700:three_prime_UTR	40.0%
	ACATGATTCAGTGAGAGAAG+GGG	+	chr8_2:52825701-52825720	None:intergenic	40.0%
	CACATGATTCAGTGAGAGAA+GGG	+	chr8_2:52825702-52825721	None:intergenic	40.0%
	ACACATGATTCAGTGAGAGA+AGG	+	chr8_2:52825703-52825722	None:intergenic	40.0%
	CAACACTGATCTGCACAATA+TGG	+	chr8_2:52825726-52825745	None:intergenic	40.0%
	CATATTGTGCAGATCAGTGT+TGG	-	chr8_2:52825724-52825743	Msa1254700:three_prime_UTR	40.0%
	GAGGTTCTATGAAGAAGTCT+TGG	-	chr8_2:52825754-52825773	Msa1254700:three_prime_UTR	40.0%
	TGGTTGTCCTTGGGATTAAT+GGG	+	chr8_2:52826024-52826043	None:intergenic	40.0%
	ATGGTTGTCCTTGGGATTAA+TGG	+	chr8_2:52826025-52826044	None:intergenic	40.0%
	TTTGTGCAGTGTACAGATGT+TGG	-	chr8_2:52826138-52826157	Msa1254700:CDS	40.0%
	TTGTGCAGTGTACAGATGTT+GGG	-	chr8_2:52826139-52826158	Msa1254700:CDS	40.0%
!!	ATGTTGGGCTAGTGAAAATG+AGG	-	chr8_2:52826154-52826173	Msa1254700:CDS	40.0%
	GATGAAGTATGTTACGGCTT+TGG	-	chr8_2:52826191-52826210	Msa1254700:CDS	40.0%
	GCAGAAGAAATGGGAACTAT+TGG	+	chr8_2:52826303-52826322	None:intergenic	40.0%
	TTCTAACAAGTGTGGGTTCA+TGG	-	chr8_2:52826368-52826387	Msa1254700:CDS	40.0%
!!	CTGAGTGAAGAAGTGTCCTA+AGG	-	chr8_2:52825622-52825641	Msa1254700:three_prime_UTR	45.0%
	AGTGTCCTAAGGGAGAACAT+TGG	-	chr8_2:52825633-52825652	Msa1254700:three_prime_UTR	45.0%
!	GATCAGTGTTGGACTCTATG+AGG	-	chr8_2:52825735-52825754	Msa1254700:three_prime_UTR	45.0%
	TGGGTCGTGATTCACTCATA+GGG	+	chr8_2:52826005-52826024	None:intergenic	45.0%
	ATGGGTCGTGATTCACTCAT+AGG	+	chr8_2:52826006-52826025	None:intergenic	45.0%
	ATCACGACCCATTAATCCCA+AGG	-	chr8_2:52826014-52826033	Msa1254700:CDS	45.0%
!!	TGGGCTAGTGAAAATGAGGT+TGG	-	chr8_2:52826158-52826177	Msa1254700:CDS	45.0%
!	GTATGTTACGGCTTTGGTAG+AGG	-	chr8_2:52826197-52826216	Msa1254700:CDS	45.0%
	GGTAGAGGATGAAGGAATCA+AGG	-	chr8_2:52826212-52826231	Msa1254700:CDS	45.0%
	AGAGGATGAAGGAATCAAGG+TGG	-	chr8_2:52826215-52826234	Msa1254700:intron	45.0%
	TCATGTATCCATCAGGGTCA+TGG	+	chr8_2:52826254-52826273	None:intergenic	45.0%
	GAGCAGGAAGCAGAAGAAAT+GGG	+	chr8_2:52826312-52826331	None:intergenic	45.0%
	AGAGCAGGAAGCAGAAGAAA+TGG	+	chr8_2:52826313-52826332	None:intergenic	45.0%
	TTCTGCTTCCTGCTCTTTCA+AGG	-	chr8_2:52826317-52826336	Msa1254700:intron	45.0%
	TATGATGCGAAGCTTGAGCA+TGG	-	chr8_2:52826398-52826417	Msa1254700:CDS	45.0%
!	TACGTGTTAGCTTGGAAGTG+TGG	+	chr8_2:52825587-52825606	None:intergenic	45.0%
!!	CTGAGTGAAGAAGTGTCCTA+AGG	-	chr8_2:52825622-52825641	Msa1254700:three_prime_UTR	45.0%
	AGTGTCCTAAGGGAGAACAT+TGG	-	chr8_2:52825633-52825652	Msa1254700:three_prime_UTR	45.0%
!	GATCAGTGTTGGACTCTATG+AGG	-	chr8_2:52825735-52825754	Msa1254700:three_prime_UTR	45.0%
	TGGGTCGTGATTCACTCATA+GGG	+	chr8_2:52826005-52826024	None:intergenic	45.0%
	ATGGGTCGTGATTCACTCAT+AGG	+	chr8_2:52826006-52826025	None:intergenic	45.0%
	ATCACGACCCATTAATCCCA+AGG	-	chr8_2:52826014-52826033	Msa1254700:CDS	45.0%
!!	TGGGCTAGTGAAAATGAGGT+TGG	-	chr8_2:52826158-52826177	Msa1254700:CDS	45.0%
!	GTATGTTACGGCTTTGGTAG+AGG	-	chr8_2:52826197-52826216	Msa1254700:CDS	45.0%
	GGTAGAGGATGAAGGAATCA+AGG	-	chr8_2:52826212-52826231	Msa1254700:CDS	45.0%
	AGAGGATGAAGGAATCAAGG+TGG	-	chr8_2:52826215-52826234	Msa1254700:intron	45.0%
	TCATGTATCCATCAGGGTCA+TGG	+	chr8_2:52826254-52826273	None:intergenic	45.0%
	GAGCAGGAAGCAGAAGAAAT+GGG	+	chr8_2:52826312-52826331	None:intergenic	45.0%
	AGAGCAGGAAGCAGAAGAAA+TGG	+	chr8_2:52826313-52826332	None:intergenic	45.0%
	TTCTGCTTCCTGCTCTTTCA+AGG	-	chr8_2:52826317-52826336	Msa1254700:intron	45.0%
	TATGATGCGAAGCTTGAGCA+TGG	-	chr8_2:52826398-52826417	Msa1254700:CDS	45.0%
	TTCAGTGAGAGAAGGGGTAG+TGG	+	chr8_2:52825695-52825714	None:intergenic	50.0%
	GGGTCGTGATTCACTCATAG+GGG	+	chr8_2:52826004-52826023	None:intergenic	50.0%
!	ACGGCTTTGGTAGAGGATGA+AGG	-	chr8_2:52826204-52826223	Msa1254700:CDS	50.0%
	TGAAGGAATCAAGGTGGAGC+AGG	-	chr8_2:52826221-52826240	Msa1254700:intron	50.0%
	GTGTTCTTCCATGACCCTGA+TGG	-	chr8_2:52826243-52826262	Msa1254700:intron	50.0%
	TTCAGTGAGAGAAGGGGTAG+TGG	+	chr8_2:52825695-52825714	None:intergenic	50.0%
	GGGTCGTGATTCACTCATAG+GGG	+	chr8_2:52826004-52826023	None:intergenic	50.0%
!	ACGGCTTTGGTAGAGGATGA+AGG	-	chr8_2:52826204-52826223	Msa1254700:CDS	50.0%
	TGAAGGAATCAAGGTGGAGC+AGG	-	chr8_2:52826221-52826240	Msa1254700:intron	50.0%
	GTGTTCTTCCATGACCCTGA+TGG	-	chr8_2:52826243-52826262	Msa1254700:intron	50.0%
	TCCTGCTCTTTCAAGGCACG+AGG	-	chr8_2:52826324-52826343	Msa1254700:CDS	55.0%
	TCCTGCTCTTTCAAGGCACG+AGG	-	chr8_2:52826324-52826343	Msa1254700:CDS	55.0%
	GCCTCGTGCCTTGAAAGAGC+AGG	+	chr8_2:52826328-52826347	None:intergenic	60.0%
	GCCTCGTGCCTTGAAAGAGC+AGG	+	chr8_2:52826328-52826347	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	52825587	52826792	52825587	ID=Msa1254700;Name=Msa1254700
chr8_2	mRNA	52825587	52826792	52825587	ID=Msa1254700-mRNA-1;Parent=Msa1254700;Name=Msa1254700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72\|1\|1\|1\|1\|1\|3\|349\|193
chr8_2	exon	52825587	52826232	52825587	ID=Msa1254700-mRNA-1:exon:16299;Parent=Msa1254700-mRNA-1
chr8_2	exon	52826323	52826440	52826323	ID=Msa1254700-mRNA-1:exon:16298;Parent=Msa1254700-mRNA-1
chr8_2	exon	52826554	52826792	52826554	ID=Msa1254700-mRNA-1:exon:16297;Parent=Msa1254700-mRNA-1
chr8_2	five_prime_UTR	52826721	52826792	52826721	ID=Msa1254700-mRNA-1:five_prime_utr;Parent=Msa1254700-mRNA-1
chr8_2	CDS	52826554	52826720	52826554	ID=Msa1254700-mRNA-1:cds;Parent=Msa1254700-mRNA-1
chr8_2	CDS	52826323	52826440	52826323	ID=Msa1254700-mRNA-1:cds;Parent=Msa1254700-mRNA-1
chr8_2	CDS	52825936	52826232	52825936	ID=Msa1254700-mRNA-1:cds;Parent=Msa1254700-mRNA-1
chr8_2	three_prime_UTR	52825587	52825935	52825587	ID=Msa1254700-mRNA-1:three_prime_utr;Parent=Msa1254700-mRNA-1

Gene Sequence

>Msa1254700

ATGGGGATTGAGGAAATTGGCAGCTATGAAGCACCACTACCCCTTCTCTCACTGAATCATGTGTCCATATTGTGCAGATCAGTGTTGGACTCTATGAGGTTCTATGAAGAAGTCTTGGGTTTTGGTCTCATCAAACGCCCTTCCTCTTTCAAATTCAATGGAGCATGGTTGTATAATTATGGGTTTGGCATACACTTGCTTGAAAATCCAAATTATGATGAATTTGATGCCCCTATGAGTGAATCACGACCCATTAATCCCAAGGACAACCATATATCATTCCAATGTACAGATGTTGGGCTAGTGAAAATGAGGTTGGAAGAAATGGGGATGAAGTATGTTACGGCTTTGGTAGAGGATGAAGGAATCAAGGTGGAGCAGGTGTTCTTCCATGACCCTGATGGATACATGATAGAACTTTGCAACTGTGAGAATATCCCAATAGTTCCCATTTCTTCTGCTTCCTGCTCTTTCAAGGCACGAGGCCAGAGCTTTAAGAAGACTGTTTCTAACAAGTGTGGGTTCATGGAAAATGTTATGATGCGAAGCTTGAGCATGGACATGATGAACTTTGCGTTTTAA

Protein sequence

>Msa1254700

MGIEEIGSYEAPLPLLSLNHVSILCRSVLDSMRFYEEVLGFGLIKRPSSFKFNGAWLYNYGFGIHLLENPNYDEFDAPMSESRPINPKDNHISFQCTDVGLVKMRLEEMGMKYVTALVEDEGIKVEQVFFHDPDGYMIELCNCENIPIVPISSASCSFKARGQSFKKTVSNKCGFMENVMMRSLSMDMMNFAF*