AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0541860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541860 MtrunA17_Chr8g0381271 100.000 64 0 0 1 64 1 64 4.47e-42 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0541860 AT1G67785.1 77.419 62 13 1 1 62 1 61 2.32e-30 101

Find 62 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTGTTCCAACAATTAT+TGG 0.198021 4_1:+25871373 None:intergenic
TTTGTCTGTGTATTGGTATT+TGG 0.264190 4_1:-25871337 Msa0541860:three_prime_UTR
CATGATATTGCTCCCTAAAA+TGG 0.275849 4_1:-25871402 Msa0541860:three_prime_UTR
CAAAGGAAAATAAAGTTTCT+TGG 0.284054 4_1:+25871264 None:intergenic
TCACATGCTCAAATAAAATA+TGG 0.325073 4_1:-25871486 Msa0541860:three_prime_UTR
GATACATTTGCCTGCTTGTT+GGG 0.334856 4_1:-25871071 Msa0541860:three_prime_UTR
GGGTCAGAGAACAATTAATT+CGG 0.374447 4_1:-25871608 Msa0541860:CDS
TGCAGAATAAAGATTCAAAA+TGG 0.377318 4_1:-25872096 Msa0541860:exon
GAATTTAAGTCTACATTTGT+GGG 0.398198 4_1:-25871188 Msa0541860:three_prime_UTR
ACATTTGTGGGCTATTGATC+TGG 0.411130 4_1:-25871176 Msa0541860:three_prime_UTR
CGCTCTTCATCAGGACGAAA+AGG 0.423832 4_1:-25871994 Msa0541860:intron
GGAATTTAAGTCTACATTTG+TGG 0.424860 4_1:-25871189 Msa0541860:three_prime_UTR
ATTTCCCTATGTTATATTGA+CGG 0.428721 4_1:-25870972 None:intergenic
GTGAAGGTTGCAACGTACTT+TGG 0.431142 4_1:-25872074 Msa0541860:CDS
GGATCATGTGTGGAAGTTGC+TGG 0.438211 4_1:-25871210 Msa0541860:three_prime_UTR
CCATGGACAAAGTCCATGTC+TGG 0.443394 4_1:-25872019 Msa0541860:CDS
TGTCTGGATCGCTCTTCATC+AGG 0.451814 4_1:-25872003 Msa0541860:CDS
AGATACATTTGCCTGCTTGT+TGG 0.455588 4_1:-25871072 Msa0541860:three_prime_UTR
CACGATAAAGAGATTGAAGA+AGG 0.457718 4_1:+25871008 None:intergenic
CTGTGTATTGGTATTTGGCT+CGG 0.458423 4_1:-25871332 Msa0541860:three_prime_UTR
TTGATCCGTCAATATAACAT+AGG 0.459663 4_1:+25870967 None:intergenic
ATAACATAGGGAAATTATGT+AGG 0.467000 4_1:+25870980 None:intergenic
GGTCAGAGAACAATTAATTC+GGG 0.478951 4_1:-25871607 Msa0541860:CDS
TGGTACTTGCCAATAATTGT+TGG 0.479210 4_1:-25871382 Msa0541860:three_prime_UTR
ACTTCTTCGTTGAGATGAGA+TGG 0.481225 4_1:+25872170 None:intergenic
TACTCAAAGGAAATGACAAC+AGG 0.482928 4_1:+25871133 None:intergenic
TGATCCGTCAATATAACATA+GGG 0.490282 4_1:+25870968 None:intergenic
TCCACATCTCACACTTTCAA+AGG 0.490834 4_1:+25871247 None:intergenic
GATGTGGAAGCCGACTTAGT+AGG 0.491463 4_1:-25871232 Msa0541860:three_prime_UTR
AACGTACTTTGGAATGTCCT+TGG 0.500806 4_1:-25872063 Msa0541860:CDS
ATGTGGAAGCCGACTTAGTA+GGG 0.504314 4_1:-25871231 Msa0541860:three_prime_UTR
AGAAGGAAGCGGAGATCAGA+AGG 0.504547 4_1:-25871629 Msa0541860:CDS
TGTGTATTGGTATTTGGCTC+GGG 0.505124 4_1:-25871331 Msa0541860:three_prime_UTR
CCAGACATGGACTTTGTCCA+TGG 0.515687 4_1:+25872019 None:intergenic
GCATTTCAAATTTAATTGAG+TGG 0.516067 4_1:-25871453 Msa0541860:three_prime_UTR
TGGTCTATGTGAAATAATGA+TGG 0.527833 4_1:-25872247 None:intergenic
TGTGTTGCAGCAAGAGAGGT+TGG 0.535566 4_1:-25871652 Msa0541860:intron
TAACATAGGGAAATTATGTA+GGG 0.536962 4_1:+25870981 None:intergenic
TTCGTTGAGATGAGATGGGA+AGG 0.540040 4_1:+25872175 None:intergenic
TAATTTGCTGCCCAACAAGC+AGG 0.540779 4_1:+25871061 None:intergenic
AGAGAGGTTGGAGAAGGAAG+CGG 0.542879 4_1:-25871640 Msa0541860:CDS
ATCTCATCTCAACGAAGAAG+TGG 0.550078 4_1:-25872168 Msa0541860:five_prime_UTR
AAACTGAATCGAAGCAAAGA+AGG 0.560808 4_1:-25872122 Msa0541860:five_prime_UTR
CCAGAAAACGAATGCTGCCA+AGG 0.569490 4_1:+25872046 None:intergenic
ATATGAAGAATCCTTCTGAC+TGG 0.574630 4_1:+25871578 None:intergenic
CTTCTTCGTTGAGATGAGAT+GGG 0.578259 4_1:+25872171 None:intergenic
AATATCATGTATAACATCAA+AGG 0.580442 4_1:+25871416 None:intergenic
GAAAGCAAACATATACTCAA+AGG 0.581829 4_1:+25871120 None:intergenic
ATAAAGATTCAAAATGGTGA+AGG 0.596896 4_1:-25872090 Msa0541860:exon
ACGATAAAGAGATTGAAGAA+GGG 0.597047 4_1:+25871009 None:intergenic
GCAGCAAGAGAGGTTGGAGA+AGG 0.597767 4_1:-25871646 Msa0541860:intron
ACACATGATCCCTACTAAGT+CGG 0.610810 4_1:+25871222 None:intergenic
GATGAAGAGCGATCCAGACA+TGG 0.613241 4_1:+25872006 None:intergenic
TCGGGAGCAAGCCAGTCAGA+AGG 0.625525 4_1:-25871589 Msa0541860:CDS
CAAGAGAAATTACAAAGCAG+AGG 0.631364 4_1:+25871523 None:intergenic
GAAGGAAGCGGAGATCAGAA+GGG 0.632205 4_1:-25871628 Msa0541860:CDS
TCCTTTGAAAGTGTGAGATG+TGG 0.637352 4_1:-25871248 Msa0541860:three_prime_UTR
TCGTTGAGATGAGATGGGAA+GGG 0.656923 4_1:+25872176 None:intergenic
GGTCTATGTGAAATAATGAT+GGG 0.659362 4_1:-25872246 None:intergenic
GACTTAGTAGGGATCATGTG+TGG 0.660263 4_1:-25871220 Msa0541860:three_prime_UTR
GTAATGTGTTGCAGCAAGAG+AGG 0.669103 4_1:-25871656 Msa0541860:intron
AGGATATGAAATATGCATCG+CGG 0.738003 4_1:+25871153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTGTTATTTAAT+TGG - chr4_1:25871527-25871546 Msa0541860:three_prime_UTR 10.0%
!!! AATATTTTGTGTTATTTAAT+TGG - chr4_1:25871527-25871546 Msa0541860:three_prime_UTR 10.0%
!! AGTGAAATTGAAATTAAATA+TGG + chr4_1:25871315-25871334 None:intergenic 15.0%
!! AGTGAAATTGAAATTAAATA+TGG + chr4_1:25871315-25871334 None:intergenic 15.0%
!! AATATCATGTATAACATCAA+AGG + chr4_1:25871794-25871813 None:intergenic 20.0%
!! AATATCATGTATAACATCAA+AGG + chr4_1:25871794-25871813 None:intergenic 20.0%
!! ATTGTGAAAAACACTTTTCT+CGG + chr4_1:25871001-25871020 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG - chr4_1:25871111-25871130 Msa0541860:three_prime_UTR 25.0%
! ATAAAGATTCAAAATGGTGA+AGG - chr4_1:25871117-25871136 Msa0541860:three_prime_UTR 25.0%
! AATATGGAAATTATCCGAAA+AGG + chr4_1:25871299-25871318 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG + chr4_1:25871393-25871412 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG + chr4_1:25871394-25871413 None:intergenic 25.0%
! TCACATGCTCAAATAAAATA+TGG - chr4_1:25871721-25871740 Msa0541860:intron 25.0%
! GCATTTCAAATTTAATTGAG+TGG - chr4_1:25871754-25871773 Msa0541860:intron 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG + chr4_1:25871946-25871965 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG - chr4_1:25872019-25872038 Msa0541860:CDS 25.0%
! TAACATAGGGAAATTATGTA+GGG + chr4_1:25872229-25872248 None:intergenic 25.0%
! ATAACATAGGGAAATTATGT+AGG + chr4_1:25872230-25872249 None:intergenic 25.0%
!! ATTGTGAAAAACACTTTTCT+CGG + chr4_1:25871001-25871020 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG - chr4_1:25871111-25871130 Msa0541860:three_prime_UTR 25.0%
! ATAAAGATTCAAAATGGTGA+AGG - chr4_1:25871117-25871136 Msa0541860:three_prime_UTR 25.0%
! AATATGGAAATTATCCGAAA+AGG + chr4_1:25871299-25871318 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG + chr4_1:25871393-25871412 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG + chr4_1:25871394-25871413 None:intergenic 25.0%
! TCACATGCTCAAATAAAATA+TGG - chr4_1:25871721-25871740 Msa0541860:intron 25.0%
! GCATTTCAAATTTAATTGAG+TGG - chr4_1:25871754-25871773 Msa0541860:intron 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG + chr4_1:25871946-25871965 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG - chr4_1:25872019-25872038 Msa0541860:CDS 25.0%
! TAACATAGGGAAATTATGTA+GGG + chr4_1:25872229-25872248 None:intergenic 25.0%
! ATAACATAGGGAAATTATGT+AGG + chr4_1:25872230-25872249 None:intergenic 25.0%
! TTGTGAAAAACACTTTTCTC+GGG + chr4_1:25871000-25871019 None:intergenic 30.0%
TGAAGAATTCGAAGAAGTAA+GGG + chr4_1:25871246-25871265 None:intergenic 30.0%
ATGAAGAATTCGAAGAAGTA+AGG + chr4_1:25871247-25871266 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG - chr4_1:25871282-25871301 Msa0541860:three_prime_UTR 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG - chr4_1:25871456-25871475 Msa0541860:three_prime_UTR 30.0%
! TATTGGCAAGTACCATTTTA+GGG + chr4_1:25871820-25871839 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG + chr4_1:25871821-25871840 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG + chr4_1:25871837-25871856 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG - chr4_1:25871870-25871889 Msa0541860:intron 30.0%
CCAAAAATAAGCAATGCAAA+CGG + chr4_1:25871920-25871939 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG - chr4_1:25872018-25872037 Msa0541860:CDS 30.0%
GAAAGCAAACATATACTCAA+AGG + chr4_1:25872090-25872109 None:intergenic 30.0%
ACGATAAAGAGATTGAAGAA+GGG + chr4_1:25872201-25872220 None:intergenic 30.0%
! TTGTGAAAAACACTTTTCTC+GGG + chr4_1:25871000-25871019 None:intergenic 30.0%
TGAAGAATTCGAAGAAGTAA+GGG + chr4_1:25871246-25871265 None:intergenic 30.0%
ATGAAGAATTCGAAGAAGTA+AGG + chr4_1:25871247-25871266 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG - chr4_1:25871282-25871301 Msa0541860:three_prime_UTR 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG - chr4_1:25871456-25871475 Msa0541860:three_prime_UTR 30.0%
! TATTGGCAAGTACCATTTTA+GGG + chr4_1:25871820-25871839 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG + chr4_1:25871821-25871840 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG + chr4_1:25871837-25871856 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG - chr4_1:25871870-25871889 Msa0541860:intron 30.0%
CCAAAAATAAGCAATGCAAA+CGG + chr4_1:25871920-25871939 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG - chr4_1:25872018-25872037 Msa0541860:CDS 30.0%
GAAAGCAAACATATACTCAA+AGG + chr4_1:25872090-25872109 None:intergenic 30.0%
ACGATAAAGAGATTGAAGAA+GGG + chr4_1:25872201-25872220 None:intergenic 30.0%
AAACTGAATCGAAGCAAAGA+AGG - chr4_1:25871085-25871104 Msa0541860:three_prime_UTR 35.0%
GAAGAATTCGAAGAAGTAAG+GGG + chr4_1:25871245-25871264 None:intergenic 35.0%
TTACTTTGTGTGCAATGTTG+AGG - chr4_1:25871417-25871436 Msa0541860:three_prime_UTR 35.0%
GGGTCAGAGAACAATTAATT+CGG - chr4_1:25871599-25871618 Msa0541860:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG - chr4_1:25871600-25871619 Msa0541860:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG + chr4_1:25871632-25871651 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG + chr4_1:25871687-25871706 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG - chr4_1:25871805-25871824 Msa0541860:intron 35.0%
TGGTACTTGCCAATAATTGT+TGG - chr4_1:25871825-25871844 Msa0541860:intron 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG - chr4_1:25871917-25871936 Msa0541860:intron 35.0%
AGGATATGAAATATGCATCG+CGG + chr4_1:25872057-25872076 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG + chr4_1:25872077-25872096 None:intergenic 35.0%
CACGATAAAGAGATTGAAGA+AGG + chr4_1:25872202-25872221 None:intergenic 35.0%
AAACTGAATCGAAGCAAAGA+AGG - chr4_1:25871085-25871104 Msa0541860:three_prime_UTR 35.0%
GAAGAATTCGAAGAAGTAAG+GGG + chr4_1:25871245-25871264 None:intergenic 35.0%
TTACTTTGTGTGCAATGTTG+AGG - chr4_1:25871417-25871436 Msa0541860:three_prime_UTR 35.0%
GGGTCAGAGAACAATTAATT+CGG - chr4_1:25871599-25871618 Msa0541860:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG - chr4_1:25871600-25871619 Msa0541860:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG + chr4_1:25871632-25871651 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG + chr4_1:25871687-25871706 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG - chr4_1:25871805-25871824 Msa0541860:intron 35.0%
TGGTACTTGCCAATAATTGT+TGG - chr4_1:25871825-25871844 Msa0541860:intron 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG - chr4_1:25871917-25871936 Msa0541860:intron 35.0%
AGGATATGAAATATGCATCG+CGG + chr4_1:25872057-25872076 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG + chr4_1:25872077-25872096 None:intergenic 35.0%
CACGATAAAGAGATTGAAGA+AGG + chr4_1:25872202-25872221 None:intergenic 35.0%
! TTTTCTCGGGCTCAAACTTT+CGG + chr4_1:25870987-25871006 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG + chr4_1:25871039-25871058 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG + chr4_1:25871040-25871059 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG - chr4_1:25871039-25871058 Msa0541860:three_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG - chr4_1:25871144-25871163 Msa0541860:three_prime_UTR 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG - chr4_1:25871171-25871190 Msa0541860:three_prime_UTR 40.0%
! GGTAACTGAGTTATTGACTG+TGG - chr4_1:25871438-25871457 Msa0541860:three_prime_UTR 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG - chr4_1:25871863-25871882 Msa0541860:intron 40.0%
! CTGTGTATTGGTATTTGGCT+CGG - chr4_1:25871875-25871894 Msa0541860:intron 40.0%
! TGTGTATTGGTATTTGGCTC+GGG - chr4_1:25871876-25871895 Msa0541860:intron 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG - chr4_1:25871959-25871978 Msa0541860:intron 40.0%
TCCACATCTCACACTTTCAA+AGG + chr4_1:25871963-25871982 None:intergenic 40.0%
ACACATGATCCCTACTAAGT+CGG + chr4_1:25871988-25872007 None:intergenic 40.0%
! ACATTTGTGGGCTATTGATC+TGG - chr4_1:25872031-25872050 Msa0541860:CDS 40.0%
AGATACATTTGCCTGCTTGT+TGG - chr4_1:25872135-25872154 Msa0541860:five_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG - chr4_1:25872136-25872155 Msa0541860:five_prime_UTR 40.0%
! TTTTCTCGGGCTCAAACTTT+CGG + chr4_1:25870987-25871006 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG + chr4_1:25871039-25871058 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG + chr4_1:25871040-25871059 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG - chr4_1:25871039-25871058 Msa0541860:three_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG - chr4_1:25871144-25871163 Msa0541860:three_prime_UTR 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG - chr4_1:25871171-25871190 Msa0541860:three_prime_UTR 40.0%
! GGTAACTGAGTTATTGACTG+TGG - chr4_1:25871438-25871457 Msa0541860:three_prime_UTR 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG - chr4_1:25871863-25871882 Msa0541860:intron 40.0%
! CTGTGTATTGGTATTTGGCT+CGG - chr4_1:25871875-25871894 Msa0541860:intron 40.0%
! TGTGTATTGGTATTTGGCTC+GGG - chr4_1:25871876-25871895 Msa0541860:intron 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG - chr4_1:25871959-25871978 Msa0541860:intron 40.0%
TCCACATCTCACACTTTCAA+AGG + chr4_1:25871963-25871982 None:intergenic 40.0%
ACACATGATCCCTACTAAGT+CGG + chr4_1:25871988-25872007 None:intergenic 40.0%
! ACATTTGTGGGCTATTGATC+TGG - chr4_1:25872031-25872050 Msa0541860:CDS 40.0%
AGATACATTTGCCTGCTTGT+TGG - chr4_1:25872135-25872154 Msa0541860:five_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG - chr4_1:25872136-25872155 Msa0541860:five_prime_UTR 40.0%
TCGTTGAGATGAGATGGGAA+GGG + chr4_1:25871034-25871053 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG + chr4_1:25871035-25871054 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG - chr4_1:25871133-25871152 Msa0541860:three_prime_UTR 45.0%
GTAATGTGTTGCAGCAAGAG+AGG - chr4_1:25871551-25871570 Msa0541860:three_prime_UTR 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG - chr4_1:25871976-25871995 Msa0541860:intron 45.0%
GACTTAGTAGGGATCATGTG+TGG - chr4_1:25871987-25872006 Msa0541860:intron 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG + chr4_1:25872149-25872168 None:intergenic 45.0%
TCGTTGAGATGAGATGGGAA+GGG + chr4_1:25871034-25871053 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG + chr4_1:25871035-25871054 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG - chr4_1:25871133-25871152 Msa0541860:three_prime_UTR 45.0%
GTAATGTGTTGCAGCAAGAG+AGG - chr4_1:25871551-25871570 Msa0541860:three_prime_UTR 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG - chr4_1:25871976-25871995 Msa0541860:intron 45.0%
GACTTAGTAGGGATCATGTG+TGG - chr4_1:25871987-25872006 Msa0541860:intron 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG + chr4_1:25872149-25872168 None:intergenic 45.0%
CCAGAAAACGAATGCTGCCA+AGG + chr4_1:25871164-25871183 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG - chr4_1:25871161-25871180 Msa0541860:three_prime_UTR 50.0%
CCAGACATGGACTTTGTCCA+TGG + chr4_1:25871191-25871210 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG - chr4_1:25871188-25871207 Msa0541860:three_prime_UTR 50.0%
GATGAAGAGCGATCCAGACA+TGG + chr4_1:25871204-25871223 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG - chr4_1:25871204-25871223 Msa0541860:three_prime_UTR 50.0%
CGCTCTTCATCAGGACGAAA+AGG - chr4_1:25871213-25871232 Msa0541860:three_prime_UTR 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG - chr4_1:25871555-25871574 Msa0541860:three_prime_UTR 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG - chr4_1:25871567-25871586 Msa0541860:exon 50.0%
AGAAGGAAGCGGAGATCAGA+AGG - chr4_1:25871578-25871597 Msa0541860:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG - chr4_1:25871579-25871598 Msa0541860:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG - chr4_1:25871975-25871994 Msa0541860:intron 50.0%
GGATCATGTGTGGAAGTTGC+TGG - chr4_1:25871997-25872016 Msa0541860:CDS 50.0%
CCAGAAAACGAATGCTGCCA+AGG + chr4_1:25871164-25871183 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG - chr4_1:25871161-25871180 Msa0541860:three_prime_UTR 50.0%
CCAGACATGGACTTTGTCCA+TGG + chr4_1:25871191-25871210 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG - chr4_1:25871188-25871207 Msa0541860:three_prime_UTR 50.0%
GATGAAGAGCGATCCAGACA+TGG + chr4_1:25871204-25871223 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG - chr4_1:25871204-25871223 Msa0541860:three_prime_UTR 50.0%
CGCTCTTCATCAGGACGAAA+AGG - chr4_1:25871213-25871232 Msa0541860:three_prime_UTR 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG - chr4_1:25871555-25871574 Msa0541860:three_prime_UTR 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG - chr4_1:25871567-25871586 Msa0541860:exon 50.0%
AGAAGGAAGCGGAGATCAGA+AGG - chr4_1:25871578-25871597 Msa0541860:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG - chr4_1:25871579-25871598 Msa0541860:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG - chr4_1:25871975-25871994 Msa0541860:intron 50.0%
GGATCATGTGTGGAAGTTGC+TGG - chr4_1:25871997-25872016 Msa0541860:CDS 50.0%
GCAGCAAGAGAGGTTGGAGA+AGG - chr4_1:25871561-25871580 Msa0541860:exon 55.0%
GCAGCAAGAGAGGTTGGAGA+AGG - chr4_1:25871561-25871580 Msa0541860:exon 55.0%
TCGGGAGCAAGCCAGTCAGA+AGG - chr4_1:25871618-25871637 Msa0541860:CDS 60.0%
TCGGGAGCAAGCCAGTCAGA+AGG - chr4_1:25871618-25871637 Msa0541860:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 25870974 25872255 25870974 ID=Msa0541860;Name=Msa0541860
chr4_1 mRNA 25870974 25872255 25870974 ID=Msa0541860-mRNA-1;Parent=Msa0541860;Name=Msa0541860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|1|0.5|2|601|64
chr4_1 exon 25870974 25871664 25870974 ID=Msa0541860-mRNA-1:exon:7006;Parent=Msa0541860-mRNA-1
chr4_1 exon 25871995 25872255 25871995 ID=Msa0541860-mRNA-1:exon:7005;Parent=Msa0541860-mRNA-1
chr4_1 five_prime_UTR 25872100 25872255 25872100 ID=Msa0541860-mRNA-1:five_prime_utr;Parent=Msa0541860-mRNA-1
chr4_1 CDS 25871995 25872099 25871995 ID=Msa0541860-mRNA-1:cds;Parent=Msa0541860-mRNA-1
chr4_1 CDS 25871575 25871664 25871575 ID=Msa0541860-mRNA-1:cds;Parent=Msa0541860-mRNA-1
chr4_1 three_prime_UTR 25870974 25871574 25870974 ID=Msa0541860-mRNA-1:three_prime_utr;Parent=Msa0541860-mRNA-1
Gene Sequence

>Msa0541860

ATGGTGAAGGTTGCAACGTACTTTGGAATGTCCTTGGCAGCATTCGTTTTCTGGCAATCCATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAGGACGAAAAGCAAGAGAGGTTGGAGAAGGAAGCGGAGATCAGAAGGGTCAGAGAACAATTAATTCGGGAGCAAGCCAGTCAGAAGGATTCTTCATATTGA

Protein sequence

>Msa0541860

MVKVATYFGMSLAAFVFWQSMDKVHVWIALHQDEKQERLEKEAEIRRVREQLIREQASQKDSSY*