AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333920 MtrunA17_Chr2g0318351 88.571 35 4 0 1 35 1 35 3.23e-16 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 27 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAACGAGTGAAGCGGATT+TGG 0.264875 2_4:+51982191 None:intergenic
ATGTACATACCATGTTTGAT+AGG 0.375476 2_4:-51980055 Msa0333920:CDS
TGAACGAGTGAAGCGGATTT+GGG 0.376003 2_4:+51982192 None:intergenic
CGCGGCATGGCTGGTTCCTC+CGG 0.398709 2_4:-51982165 Msa0333920:CDS
GTTCATCGCCGCGGCATGGC+TGG 0.417524 2_4:-51982174 Msa0333920:CDS
ACTCGTTCATCGCCGCGGCA+TGG 0.488087 2_4:-51982178 Msa0333920:CDS
TTTGAAATTTACAGTGATGA+CGG 0.514300 2_4:+51982108 None:intergenic
AAAGGCATCGAAGGAAGGGA+GGG 0.517248 2_4:+51982132 None:intergenic
ATTTACAGTGATGACGGAAA+AGG 0.518835 2_4:+51982114 None:intergenic
AAAAGGCATCGAAGGAAGGG+AGG 0.521951 2_4:+51982131 None:intergenic
ATCAAACATGGTATGTACAT+TGG 0.534411 2_4:+51980058 None:intergenic
ACGGAAAAGGCATCGAAGGA+AGG 0.541002 2_4:+51982127 None:intergenic
GAGTGAAGCGGATTTGGGTG+AGG 0.556913 2_4:+51982197 None:intergenic
CGGAAAAGGCATCGAAGGAA+GGG 0.577133 2_4:+51982128 None:intergenic
CGGCGTGGACAGCAGCAGCT+CGG 0.586707 2_4:-51982245 Msa0333920:CDS
CGGAGGAACCAGCCATGCCG+CGG 0.602802 2_4:+51982166 None:intergenic
AAGGGAGGGGAATACAATAC+CGG 0.610448 2_4:+51982146 None:intergenic
GATGACGGAAAAGGCATCGA+AGG 0.617840 2_4:+51982123 None:intergenic
AAGGCATCGAAGGAAGGGAG+GGG 0.624488 2_4:+51982133 None:intergenic
AAGCGGATTTGGGTGAGGAG+AGG 0.632963 2_4:+51982202 None:intergenic
GCGGCGATGAACGAGTGAAG+CGG 0.636022 2_4:+51982185 None:intergenic
ATCAATCAATCATGGCGGCG+TGG 0.642816 2_4:-51982260 None:intergenic
TATGTACATTGGAAGTGCTA+AGG 0.655246 2_4:+51980069 None:intergenic
TTTCAAAATCCTATCAAACA+TGG 0.655678 2_4:+51980046 None:intergenic
GCTCGGCAAGCAATGAACGT+CGG 0.679714 2_4:-51982228 Msa0333920:CDS
GCTTCACTCGTTCATCGCCG+CGG 0.699867 2_4:-51982183 Msa0333920:CDS
GGAGGGGAATACAATACCGG+AGG 0.719986 2_4:+51982149 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAAACATGTATTA+TGG + chr2_4:51980526-51980545 None:intergenic 10.0%
!!! TACTATTTTTCTATATAAAT+AGG + chr2_4:51981188-51981207 None:intergenic 10.0%
!!! TGATAATGTTAATTTTAAAA+CGG + chr2_4:51981246-51981265 None:intergenic 10.0%
!!! CAATTAAATTTTTAATTAGT+AGG - chr2_4:51981435-51981454 Msa0333920:intron 10.0%
!! TATATGTTACATTAAAAAAT+TGG + chr2_4:51981679-51981698 None:intergenic 10.0%
!!! TAAAAATAAGAAGAAATTTT+TGG - chr2_4:51981824-51981843 Msa0333920:intron 10.0%
!!! ATTTTTTAAAACATGTATTA+TGG + chr2_4:51980526-51980545 None:intergenic 10.0%
!!! TACTATTTTTCTATATAAAT+AGG + chr2_4:51981188-51981207 None:intergenic 10.0%
!!! TGATAATGTTAATTTTAAAA+CGG + chr2_4:51981246-51981265 None:intergenic 10.0%
!!! CAATTAAATTTTTAATTAGT+AGG - chr2_4:51981435-51981454 Msa0333920:intron 10.0%
!! TATATGTTACATTAAAAAAT+TGG + chr2_4:51981679-51981698 None:intergenic 10.0%
!!! TAAAAATAAGAAGAAATTTT+TGG - chr2_4:51981824-51981843 Msa0333920:intron 10.0%
!! TTAATAGATATTAATCGTTA+TGG + chr2_4:51981211-51981230 None:intergenic 15.0%
!!! TTATGAAGTTAATTTTTTGT+AGG + chr2_4:51981323-51981342 None:intergenic 15.0%
!!! ATTGTAGTAATTAGTTTTTA+AGG + chr2_4:51981419-51981438 None:intergenic 15.0%
!!! GTTAATATATATTTTAGCTA+TGG - chr2_4:51982106-51982125 Msa0333920:intron 15.0%
!! TTAATAGATATTAATCGTTA+TGG + chr2_4:51981211-51981230 None:intergenic 15.0%
!!! TTATGAAGTTAATTTTTTGT+AGG + chr2_4:51981323-51981342 None:intergenic 15.0%
!!! ATTGTAGTAATTAGTTTTTA+AGG + chr2_4:51981419-51981438 None:intergenic 15.0%
!!! GTTAATATATATTTTAGCTA+TGG - chr2_4:51982106-51982125 Msa0333920:intron 15.0%
!! GCAAAAATTAAATTGTTTCA+GGG + chr2_4:51980362-51980381 None:intergenic 20.0%
!!! GTTTTAATCTTTGTTATCTA+GGG + chr2_4:51980823-51980842 None:intergenic 20.0%
!!! TGTTTTAATCTTTGTTATCT+AGG + chr2_4:51980824-51980843 None:intergenic 20.0%
!!! GTTCTTATTTTTCTATTCTT+TGG + chr2_4:51981125-51981144 None:intergenic 20.0%
!! TATACGGTACATTAAAAATT+TGG + chr2_4:51981535-51981554 None:intergenic 20.0%
!! GTATTCGATTAACATTTATA+CGG + chr2_4:51981551-51981570 None:intergenic 20.0%
!! TTGTACATAAAATACATAGT+TGG + chr2_4:51981748-51981767 None:intergenic 20.0%
!! GCAAAAATTAAATTGTTTCA+GGG + chr2_4:51980362-51980381 None:intergenic 20.0%
!!! GTTTTAATCTTTGTTATCTA+GGG + chr2_4:51980823-51980842 None:intergenic 20.0%
!!! TGTTTTAATCTTTGTTATCT+AGG + chr2_4:51980824-51980843 None:intergenic 20.0%
!!! GTTCTTATTTTTCTATTCTT+TGG + chr2_4:51981125-51981144 None:intergenic 20.0%
!! TATACGGTACATTAAAAATT+TGG + chr2_4:51981535-51981554 None:intergenic 20.0%
!! GTATTCGATTAACATTTATA+CGG + chr2_4:51981551-51981570 None:intergenic 20.0%
!! TTGTACATAAAATACATAGT+TGG + chr2_4:51981748-51981767 None:intergenic 20.0%
!! TTTGAAATTTACAGTGATGA+CGG + chr2_4:51980192-51980211 None:intergenic 25.0%
! TAACGAAACAATTACATTGA+TGG - chr2_4:51980323-51980342 Msa0333920:intron 25.0%
! GGCAAAAATTAAATTGTTTC+AGG + chr2_4:51980363-51980382 None:intergenic 25.0%
!! TTGAACTCTTTTCTATCTTT+TGG + chr2_4:51980419-51980438 None:intergenic 25.0%
!! TTGACAATTTTGAATAGGTA+TGG + chr2_4:51980479-51980498 None:intergenic 25.0%
! TACCTATTCAAAATTGTCAA+AGG - chr2_4:51980479-51980498 Msa0333920:intron 25.0%
!! AACCTTTGACAATTTTGAAT+AGG + chr2_4:51980484-51980503 None:intergenic 25.0%
!! CAAACTATCTAAAATTGCTT+TGG + chr2_4:51980634-51980653 None:intergenic 25.0%
! GTTAGTATAAAGATGACAAA+CGG - chr2_4:51981932-51981951 Msa0333920:intron 25.0%
! TTGAGTAATTTGAAGATAAG+TGG - chr2_4:51982065-51982084 Msa0333920:intron 25.0%
!! AAGTGGTTAGTTAGATTAAT+CGG + chr2_4:51982148-51982167 None:intergenic 25.0%
!! TTTGAAATTTACAGTGATGA+CGG + chr2_4:51980192-51980211 None:intergenic 25.0%
! TAACGAAACAATTACATTGA+TGG - chr2_4:51980323-51980342 Msa0333920:intron 25.0%
! GGCAAAAATTAAATTGTTTC+AGG + chr2_4:51980363-51980382 None:intergenic 25.0%
!! TTGAACTCTTTTCTATCTTT+TGG + chr2_4:51980419-51980438 None:intergenic 25.0%
!! TTGACAATTTTGAATAGGTA+TGG + chr2_4:51980479-51980498 None:intergenic 25.0%
! TACCTATTCAAAATTGTCAA+AGG - chr2_4:51980479-51980498 Msa0333920:intron 25.0%
!! AACCTTTGACAATTTTGAAT+AGG + chr2_4:51980484-51980503 None:intergenic 25.0%
!! CAAACTATCTAAAATTGCTT+TGG + chr2_4:51980634-51980653 None:intergenic 25.0%
! GTTAGTATAAAGATGACAAA+CGG - chr2_4:51981932-51981951 Msa0333920:intron 25.0%
! TTGAGTAATTTGAAGATAAG+TGG - chr2_4:51982065-51982084 Msa0333920:intron 25.0%
!! AAGTGGTTAGTTAGATTAAT+CGG + chr2_4:51982148-51982167 None:intergenic 25.0%
! TGTTGTTGTTGCTATTATGT+TGG + chr2_4:51980384-51980403 None:intergenic 30.0%
TAAGATGAATGTCATTGAAC+TGG + chr2_4:51980583-51980602 None:intergenic 30.0%
GAAAAATTAAGATGAGACAG+TGG + chr2_4:51980612-51980631 None:intergenic 30.0%
! AAAAGAACTACCATTTTCCA+TGG + chr2_4:51980939-51980958 None:intergenic 30.0%
!! ATATAAATAGGAGCGTCTTT+AGG + chr2_4:51981176-51981195 None:intergenic 30.0%
AGGTTACTGTAATAGTGTAA+CGG - chr2_4:51981455-51981474 Msa0333920:intron 30.0%
CGGTACATTAAAAATTTGGT+AGG + chr2_4:51981531-51981550 None:intergenic 30.0%
!!! TCGTTTGTAAGTTTTAGAAG+AGG - chr2_4:51982001-51982020 Msa0333920:intron 30.0%
TAATTTGAAGATAAGTGGAG+AGG - chr2_4:51982070-51982089 Msa0333920:intron 30.0%
!! TTTTAGCTATGGAAGAACTT+AGG - chr2_4:51982117-51982136 Msa0333920:intron 30.0%
ATCAAACATGGTATGTACAT+TGG + chr2_4:51982242-51982261 None:intergenic 30.0%
ATGTACATACCATGTTTGAT+AGG - chr2_4:51982242-51982261 Msa0333920:CDS 30.0%
! TGTTGTTGTTGCTATTATGT+TGG + chr2_4:51980384-51980403 None:intergenic 30.0%
TAAGATGAATGTCATTGAAC+TGG + chr2_4:51980583-51980602 None:intergenic 30.0%
GAAAAATTAAGATGAGACAG+TGG + chr2_4:51980612-51980631 None:intergenic 30.0%
! AAAAGAACTACCATTTTCCA+TGG + chr2_4:51980939-51980958 None:intergenic 30.0%
!! ATATAAATAGGAGCGTCTTT+AGG + chr2_4:51981176-51981195 None:intergenic 30.0%
AGGTTACTGTAATAGTGTAA+CGG - chr2_4:51981455-51981474 Msa0333920:intron 30.0%
CGGTACATTAAAAATTTGGT+AGG + chr2_4:51981531-51981550 None:intergenic 30.0%
!!! TCGTTTGTAAGTTTTAGAAG+AGG - chr2_4:51982001-51982020 Msa0333920:intron 30.0%
TAATTTGAAGATAAGTGGAG+AGG - chr2_4:51982070-51982089 Msa0333920:intron 30.0%
!! TTTTAGCTATGGAAGAACTT+AGG - chr2_4:51982117-51982136 Msa0333920:intron 30.0%
ATCAAACATGGTATGTACAT+TGG + chr2_4:51982242-51982261 None:intergenic 30.0%
ATGTACATACCATGTTTGAT+AGG - chr2_4:51982242-51982261 Msa0333920:CDS 30.0%
!! ATTTACAGTGATGACGGAAA+AGG + chr2_4:51980186-51980205 None:intergenic 35.0%
ATGCACAAATGAGAGTGATT+TGG + chr2_4:51980224-51980243 None:intergenic 35.0%
TCATTGAACTGGAGTCAAAT+GGG + chr2_4:51980572-51980591 None:intergenic 35.0%
AGTTTGTATTCGATGTGTGA+TGG - chr2_4:51980678-51980697 Msa0333920:intron 35.0%
AAGAAAACAATCGTGGACAT+TGG + chr2_4:51981008-51981027 None:intergenic 35.0%
! AATGTCCACGATTGTTTTCT+TGG - chr2_4:51981007-51981026 Msa0333920:intron 35.0%
!!! TTTTGGAACTAATGCCAAGT+AGG - chr2_4:51981841-51981860 Msa0333920:intron 35.0%
! AATGTTACAAACGCGGATTT+TGG + chr2_4:51981978-51981997 None:intergenic 35.0%
!! TATGTACATTGGAAGTGCTA+AGG + chr2_4:51982231-51982250 None:intergenic 35.0%
!! ATTTACAGTGATGACGGAAA+AGG + chr2_4:51980186-51980205 None:intergenic 35.0%
ATGCACAAATGAGAGTGATT+TGG + chr2_4:51980224-51980243 None:intergenic 35.0%
TCATTGAACTGGAGTCAAAT+GGG + chr2_4:51980572-51980591 None:intergenic 35.0%
AGTTTGTATTCGATGTGTGA+TGG - chr2_4:51980678-51980697 Msa0333920:intron 35.0%
AAGAAAACAATCGTGGACAT+TGG + chr2_4:51981008-51981027 None:intergenic 35.0%
! AATGTCCACGATTGTTTTCT+TGG - chr2_4:51981007-51981026 Msa0333920:intron 35.0%
!!! TTTTGGAACTAATGCCAAGT+AGG - chr2_4:51981841-51981860 Msa0333920:intron 35.0%
! AATGTTACAAACGCGGATTT+TGG + chr2_4:51981978-51981997 None:intergenic 35.0%
!! TATGTACATTGGAAGTGCTA+AGG + chr2_4:51982231-51982250 None:intergenic 35.0%
GTCATTGAACTGGAGTCAAA+TGG + chr2_4:51980573-51980592 None:intergenic 40.0%
! TTTGATGTTGCTTGCAACAG+TGG + chr2_4:51980714-51980733 None:intergenic 40.0%
GTTGCAAGCAACATCAAATG+AGG - chr2_4:51980716-51980735 Msa0333920:intron 40.0%
! GTTATCTAGGGTGATCGAAT+TGG + chr2_4:51980811-51980830 None:intergenic 40.0%
!! ATCCTTTAGAACCAACTCCA+TGG - chr2_4:51980919-51980938 Msa0333920:intron 40.0%
!! TTCCATGGAGTTGGTTCTAA+AGG + chr2_4:51980924-51980943 None:intergenic 40.0%
AGAACCAACTCCATGGAAAA+TGG - chr2_4:51980926-51980945 Msa0333920:intron 40.0%
! ACTACCATTTTCCATGGAGT+TGG + chr2_4:51980933-51980952 None:intergenic 40.0%
TTTCGCCAAGAAAACAATCG+TGG + chr2_4:51981015-51981034 None:intergenic 40.0%
! TGCCAAGTAGGATTTTGTTG+AGG - chr2_4:51981853-51981872 Msa0333920:intron 40.0%
CACCTCAACAAAATCCTACT+TGG + chr2_4:51981858-51981877 None:intergenic 40.0%
! CAAGTAGGATTTTGTTGAGG+TGG - chr2_4:51981856-51981875 Msa0333920:intron 40.0%
ACGACACAATGTTACAAACG+CGG + chr2_4:51981985-51982004 None:intergenic 40.0%
AACCACTTGATTCATGCACA+TGG - chr2_4:51982160-51982179 Msa0333920:CDS 40.0%
AACCATGTGCATGAATCAAG+TGG + chr2_4:51982165-51982184 None:intergenic 40.0%
GATTCATGCACATGGTTCAT+AGG - chr2_4:51982168-51982187 Msa0333920:CDS 40.0%
GTCATTGAACTGGAGTCAAA+TGG + chr2_4:51980573-51980592 None:intergenic 40.0%
! TTTGATGTTGCTTGCAACAG+TGG + chr2_4:51980714-51980733 None:intergenic 40.0%
GTTGCAAGCAACATCAAATG+AGG - chr2_4:51980716-51980735 Msa0333920:intron 40.0%
! GTTATCTAGGGTGATCGAAT+TGG + chr2_4:51980811-51980830 None:intergenic 40.0%
!! ATCCTTTAGAACCAACTCCA+TGG - chr2_4:51980919-51980938 Msa0333920:intron 40.0%
!! TTCCATGGAGTTGGTTCTAA+AGG + chr2_4:51980924-51980943 None:intergenic 40.0%
AGAACCAACTCCATGGAAAA+TGG - chr2_4:51980926-51980945 Msa0333920:intron 40.0%
! ACTACCATTTTCCATGGAGT+TGG + chr2_4:51980933-51980952 None:intergenic 40.0%
TTTCGCCAAGAAAACAATCG+TGG + chr2_4:51981015-51981034 None:intergenic 40.0%
! TGCCAAGTAGGATTTTGTTG+AGG - chr2_4:51981853-51981872 Msa0333920:intron 40.0%
CACCTCAACAAAATCCTACT+TGG + chr2_4:51981858-51981877 None:intergenic 40.0%
! CAAGTAGGATTTTGTTGAGG+TGG - chr2_4:51981856-51981875 Msa0333920:intron 40.0%
ACGACACAATGTTACAAACG+CGG + chr2_4:51981985-51982004 None:intergenic 40.0%
AACCACTTGATTCATGCACA+TGG - chr2_4:51982160-51982179 Msa0333920:CDS 40.0%
AACCATGTGCATGAATCAAG+TGG + chr2_4:51982165-51982184 None:intergenic 40.0%
GATTCATGCACATGGTTCAT+AGG - chr2_4:51982168-51982187 Msa0333920:CDS 40.0%
! TGAACGAGTGAAGCGGATTT+GGG + chr2_4:51980108-51980127 None:intergenic 45.0%
! ATGAACGAGTGAAGCGGATT+TGG + chr2_4:51980109-51980128 None:intergenic 45.0%
AAGGGAGGGGAATACAATAC+CGG + chr2_4:51980154-51980173 None:intergenic 45.0%
TCGTGAACATCATTCCCTCT+TGG - chr2_4:51980742-51980761 Msa0333920:intron 45.0%
TTCAAAGAGCAGCACCAAGA+GGG + chr2_4:51980759-51980778 None:intergenic 45.0%
! AATCGTGGACATTGGTTGTG+AGG + chr2_4:51981000-51981019 None:intergenic 45.0%
! AGATGACAAACGGAGAGTGT+TGG - chr2_4:51981942-51981961 Msa0333920:intron 45.0%
!!! ACGGAGAGTGTTGGATTTTG+TGG - chr2_4:51981951-51981970 Msa0333920:intron 45.0%
! TGAACGAGTGAAGCGGATTT+GGG + chr2_4:51980108-51980127 None:intergenic 45.0%
! ATGAACGAGTGAAGCGGATT+TGG + chr2_4:51980109-51980128 None:intergenic 45.0%
AAGGGAGGGGAATACAATAC+CGG + chr2_4:51980154-51980173 None:intergenic 45.0%
TCGTGAACATCATTCCCTCT+TGG - chr2_4:51980742-51980761 Msa0333920:intron 45.0%
TTCAAAGAGCAGCACCAAGA+GGG + chr2_4:51980759-51980778 None:intergenic 45.0%
! AATCGTGGACATTGGTTGTG+AGG + chr2_4:51981000-51981019 None:intergenic 45.0%
! AGATGACAAACGGAGAGTGT+TGG - chr2_4:51981942-51981961 Msa0333920:intron 45.0%
!!! ACGGAGAGTGTTGGATTTTG+TGG - chr2_4:51981951-51981970 Msa0333920:intron 45.0%
!! ATTTAATGTTAAATAAAAAA+CGG - chr2_4:51981767-51981786 Msa0333920:intron 5.0%
!! ATTTAATGTTAAATAAAAAA+CGG - chr2_4:51981767-51981786 Msa0333920:intron 5.0%
!! AAAGGCATCGAAGGAAGGGA+GGG + chr2_4:51980168-51980187 None:intergenic 50.0%
!! AAAAGGCATCGAAGGAAGGG+AGG + chr2_4:51980169-51980188 None:intergenic 50.0%
!! CGGAAAAGGCATCGAAGGAA+GGG + chr2_4:51980172-51980191 None:intergenic 50.0%
!! ACGGAAAAGGCATCGAAGGA+AGG + chr2_4:51980173-51980192 None:intergenic 50.0%
!! GATGACGGAAAAGGCATCGA+AGG + chr2_4:51980177-51980196 None:intergenic 50.0%
GTTCAAAGAGCAGCACCAAG+AGG + chr2_4:51980760-51980779 None:intergenic 50.0%
GTTGTGAGGTTGTTCGTGCT+TGG + chr2_4:51980986-51981005 None:intergenic 50.0%
!! AAAGGCATCGAAGGAAGGGA+GGG + chr2_4:51980168-51980187 None:intergenic 50.0%
!! AAAAGGCATCGAAGGAAGGG+AGG + chr2_4:51980169-51980188 None:intergenic 50.0%
!! CGGAAAAGGCATCGAAGGAA+GGG + chr2_4:51980172-51980191 None:intergenic 50.0%
!! ACGGAAAAGGCATCGAAGGA+AGG + chr2_4:51980173-51980192 None:intergenic 50.0%
!! GATGACGGAAAAGGCATCGA+AGG + chr2_4:51980177-51980196 None:intergenic 50.0%
GTTCAAAGAGCAGCACCAAG+AGG + chr2_4:51980760-51980779 None:intergenic 50.0%
GTTGTGAGGTTGTTCGTGCT+TGG + chr2_4:51980986-51981005 None:intergenic 50.0%
GCTCGGCAAGCAATGAACGT+CGG - chr2_4:51980069-51980088 Msa0333920:CDS 55.0%
! AAGCGGATTTGGGTGAGGAG+AGG + chr2_4:51980098-51980117 None:intergenic 55.0%
! GAGTGAAGCGGATTTGGGTG+AGG + chr2_4:51980103-51980122 None:intergenic 55.0%
GGAGGGGAATACAATACCGG+AGG + chr2_4:51980151-51980170 None:intergenic 55.0%
!! AAGGCATCGAAGGAAGGGAG+GGG + chr2_4:51980167-51980186 None:intergenic 55.0%
GCTCGGCAAGCAATGAACGT+CGG - chr2_4:51980069-51980088 Msa0333920:CDS 55.0%
! AAGCGGATTTGGGTGAGGAG+AGG + chr2_4:51980098-51980117 None:intergenic 55.0%
! GAGTGAAGCGGATTTGGGTG+AGG + chr2_4:51980103-51980122 None:intergenic 55.0%
GGAGGGGAATACAATACCGG+AGG + chr2_4:51980151-51980170 None:intergenic 55.0%
!! AAGGCATCGAAGGAAGGGAG+GGG + chr2_4:51980167-51980186 None:intergenic 55.0%
GCGGCGATGAACGAGTGAAG+CGG + chr2_4:51980115-51980134 None:intergenic 60.0%
GCTTCACTCGTTCATCGCCG+CGG - chr2_4:51980114-51980133 Msa0333920:intron 60.0%
GCGGCGATGAACGAGTGAAG+CGG + chr2_4:51980115-51980134 None:intergenic 60.0%
GCTTCACTCGTTCATCGCCG+CGG - chr2_4:51980114-51980133 Msa0333920:intron 60.0%
ACTCGTTCATCGCCGCGGCA+TGG - chr2_4:51980119-51980138 Msa0333920:intron 65.0%
ACTCGTTCATCGCCGCGGCA+TGG - chr2_4:51980119-51980138 Msa0333920:intron 65.0%
CGGCGTGGACAGCAGCAGCT+CGG - chr2_4:51980052-51980071 Msa0333920:CDS 70.0%
GTTCATCGCCGCGGCATGGC+TGG - chr2_4:51980123-51980142 Msa0333920:intron 70.0%
CGGAGGAACCAGCCATGCCG+CGG + chr2_4:51980134-51980153 None:intergenic 70.0%
! CGCGGCATGGCTGGTTCCTC+CGG - chr2_4:51980132-51980151 Msa0333920:intron 70.0%
CGGCGTGGACAGCAGCAGCT+CGG - chr2_4:51980052-51980071 Msa0333920:CDS 70.0%
GTTCATCGCCGCGGCATGGC+TGG - chr2_4:51980123-51980142 Msa0333920:intron 70.0%
CGGAGGAACCAGCCATGCCG+CGG + chr2_4:51980134-51980153 None:intergenic 70.0%
! CGCGGCATGGCTGGTTCCTC+CGG - chr2_4:51980132-51980151 Msa0333920:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 51980048 51982271 51980048 ID=Msa0333920;Name=Msa0333920
chr2_4 mRNA 51980048 51982271 51980048 ID=Msa0333920-mRNA-1;Parent=Msa0333920;Name=Msa0333920-mRNA-1;_AED=0.74;_eAED=0.74;_QI=0|0|0|0.5|0|0.5|2|0|77
chr2_4 exon 51982120 51982271 51982120 ID=Msa0333920-mRNA-1:exon:15637;Parent=Msa0333920-mRNA-1
chr2_4 exon 51980048 51980129 51980048 ID=Msa0333920-mRNA-1:exon:15636;Parent=Msa0333920-mRNA-1
chr2_4 CDS 51982120 51982271 51982120 ID=Msa0333920-mRNA-1:cds;Parent=Msa0333920-mRNA-1
chr2_4 CDS 51980048 51980129 51980048 ID=Msa0333920-mRNA-1:cds;Parent=Msa0333920-mRNA-1
Gene Sequence

>Msa0333920

ATGGCGGCGTGGACAGCAGCAGCTCGGCAAGCAATGAACGTCGGACGCCTCTCCTCACCCAAATCCGCTTCACTCGTTCATCGCCGCGGCATGGCTGGTTCCTCCGGTATTGTATTCCCCTCCCTTCCTTCGATGCCTTTTCCGTCATCACTGCAGTTTTTGTATCTAAAGTCTATTCAATCTACTTCATCCTTAGCACTTCCAATGTACATACCATGTTTGATAGGATTTTGA

Protein sequence

>Msa0333920

MAAWTAAARQAMNVGRLSSPKSASLVHRRGMAGSSGIVFPSLPSMPFPSSLQFLYLKSIQSTSSLALPMYIPCLIGF*