AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703230 MtrunA17_Chr8g0381271 100.000 64 0 0 1 64 1 64 4.47e-42 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703230 AT1G67785.1 77.419 62 13 1 1 62 1 61 2.32e-30 101

Find 63 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTGTTCCAACAATTAT+TGG 0.198021 4_4:+75058696 None:intergenic
TTTGTCTGTGTATTGGTATT+TGG 0.264190 4_4:-75058660 Msa0703230:three_prime_UTR
CATGATATTGCTCCCTAAAA+TGG 0.275849 4_4:-75058725 Msa0703230:three_prime_UTR
CAAAGGAAAATAAAGTTTCT+TGG 0.284054 4_4:+75058587 None:intergenic
TCACATGCTCAAATAAAATA+TGG 0.325073 4_4:-75058809 Msa0703230:three_prime_UTR
GATACATTTGCCTGCTTGTT+GGG 0.334856 4_4:-75058394 Msa0703230:three_prime_UTR
TTTACTCGGGCTCAAACTTT+CGG 0.371928 4_4:+75059548 None:intergenic
GGGTCAGAGAACAATTAATT+CGG 0.374447 4_4:-75058931 Msa0703230:CDS
TGCAGAATAAAGATTCAAAA+TGG 0.377318 4_4:-75059421 Msa0703230:exon
GAATTTAAGTCTACATTTGT+GGG 0.398198 4_4:-75058511 Msa0703230:three_prime_UTR
ACATTTGTGGGCTATTGATC+TGG 0.411130 4_4:-75058499 Msa0703230:three_prime_UTR
CGCTCTTCATCAGGACGAAA+AGG 0.423832 4_4:-75059319 Msa0703230:intron
GGAATTTAAGTCTACATTTG+TGG 0.424860 4_4:-75058512 Msa0703230:three_prime_UTR
ATTTCCCTATGTTATATTGA+CGG 0.428721 4_4:-75058295 None:intergenic
GTGAAGGTTGCAACGTACTT+TGG 0.431142 4_4:-75059399 Msa0703230:CDS
GGATCATGTGTGGAAGTTGC+TGG 0.438211 4_4:-75058533 Msa0703230:three_prime_UTR
CCATGGACAAAGTCCATGTC+TGG 0.443394 4_4:-75059344 Msa0703230:CDS
TGTCTGGATCGCTCTTCATC+AGG 0.451814 4_4:-75059328 Msa0703230:CDS
AGATACATTTGCCTGCTTGT+TGG 0.455588 4_4:-75058395 Msa0703230:three_prime_UTR
CACGATAAAGAGATTGAAGA+AGG 0.457718 4_4:+75058331 None:intergenic
CTGTGTATTGGTATTTGGCT+CGG 0.458423 4_4:-75058655 Msa0703230:three_prime_UTR
TTGATCCGTCAATATAACAT+AGG 0.459663 4_4:+75058290 None:intergenic
ATAACATAGGGAAATTATGT+AGG 0.467000 4_4:+75058303 None:intergenic
GGTCAGAGAACAATTAATTC+GGG 0.478951 4_4:-75058930 Msa0703230:CDS
TGGTACTTGCCAATAATTGT+TGG 0.479210 4_4:-75058705 Msa0703230:three_prime_UTR
ACTTCTTCGTTGAGATGAGA+TGG 0.481225 4_4:+75059495 None:intergenic
TACTCAAAGGAAATGACAAC+AGG 0.482928 4_4:+75058456 None:intergenic
TGATCCGTCAATATAACATA+GGG 0.490282 4_4:+75058291 None:intergenic
TCCACATCTCACACTTTCAA+AGG 0.490834 4_4:+75058570 None:intergenic
GATGTGGAAGCCGACTTAGT+AGG 0.491463 4_4:-75058555 Msa0703230:three_prime_UTR
AACGTACTTTGGAATGTCCT+TGG 0.500806 4_4:-75059388 Msa0703230:CDS
ATGTGGAAGCCGACTTAGTA+GGG 0.504314 4_4:-75058554 Msa0703230:three_prime_UTR
AGAAGGAAGCGGAGATCAGA+AGG 0.504547 4_4:-75058952 Msa0703230:CDS
TGTGTATTGGTATTTGGCTC+GGG 0.505124 4_4:-75058654 Msa0703230:three_prime_UTR
CCAGACATGGACTTTGTCCA+TGG 0.515687 4_4:+75059344 None:intergenic
GCATTTCAAATTTAATTGAG+TGG 0.516067 4_4:-75058776 Msa0703230:three_prime_UTR
TGGTCTATGTGAAATAATGA+TGG 0.527833 4_4:-75059572 None:intergenic
TGTGTTGCAGCAAGAGAGGT+TGG 0.535566 4_4:-75058975 Msa0703230:intron
TAACATAGGGAAATTATGTA+GGG 0.538363 4_4:+75058304 None:intergenic
TTCGTTGAGATGAGATGGGA+AGG 0.540040 4_4:+75059500 None:intergenic
TAATTTGCTGCCCAACAAGC+AGG 0.540779 4_4:+75058384 None:intergenic
AGAGAGGTTGGAGAAGGAAG+CGG 0.542879 4_4:-75058963 Msa0703230:CDS
ATCTCATCTCAACGAAGAAG+TGG 0.550078 4_4:-75059493 Msa0703230:five_prime_UTR
AAACTGAATCGAAGCAAAGA+AGG 0.560808 4_4:-75059447 Msa0703230:five_prime_UTR
CCAGAAAACGAATGCTGCCA+AGG 0.569490 4_4:+75059371 None:intergenic
ATATGAAGAATCCTTCTGAC+TGG 0.574630 4_4:+75058901 None:intergenic
CTTCTTCGTTGAGATGAGAT+GGG 0.578259 4_4:+75059496 None:intergenic
AATATCATGTATAACATCAA+AGG 0.580442 4_4:+75058739 None:intergenic
GAAAGCAAACATATACTCAA+AGG 0.581829 4_4:+75058443 None:intergenic
ATAAAGATTCAAAATGGTGA+AGG 0.596896 4_4:-75059415 Msa0703230:exon
ACGATAAAGAGATTGAAGAA+GGG 0.597047 4_4:+75058332 None:intergenic
GCAGCAAGAGAGGTTGGAGA+AGG 0.597767 4_4:-75058969 Msa0703230:intron
ACACATGATCCCTACTAAGT+CGG 0.610810 4_4:+75058545 None:intergenic
GATGAAGAGCGATCCAGACA+TGG 0.613241 4_4:+75059331 None:intergenic
TCGGGAGCAAGCCAGTCAGA+AGG 0.625525 4_4:-75058912 Msa0703230:CDS
CAAGAGAAATTACAAAGCAG+AGG 0.631364 4_4:+75058846 None:intergenic
GAAGGAAGCGGAGATCAGAA+GGG 0.632205 4_4:-75058951 Msa0703230:CDS
TCCTTTGAAAGTGTGAGATG+TGG 0.637352 4_4:-75058571 Msa0703230:three_prime_UTR
TCGTTGAGATGAGATGGGAA+GGG 0.656923 4_4:+75059501 None:intergenic
GGTCTATGTGAAATAATGAT+GGG 0.659362 4_4:-75059571 None:intergenic
GACTTAGTAGGGATCATGTG+TGG 0.660263 4_4:-75058543 Msa0703230:three_prime_UTR
GTAATGTGTTGCAGCAAGAG+AGG 0.669103 4_4:-75058979 Msa0703230:intron
AGGATATGAAATATGCATCG+CGG 0.738003 4_4:+75058476 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTGTTATTTAAT+TGG - chr4_4:75058852-75058871 Msa0703230:three_prime_UTR 10.0%
!!! AATATTTTGTGTTATTTAAT+TGG - chr4_4:75058852-75058871 Msa0703230:three_prime_UTR 10.0%
!! AGTGAAATTGAAATTGAATA+TGG + chr4_4:75058638-75058657 None:intergenic 20.0%
!! ATTAATTTCACTCATTTAAG+AGG - chr4_4:75058675-75058694 Msa0703230:three_prime_UTR 20.0%
!! AATATCATGTATAACATCAA+AGG + chr4_4:75059119-75059138 None:intergenic 20.0%
!! AGTGAAATTGAAATTGAATA+TGG + chr4_4:75058638-75058657 None:intergenic 20.0%
!! ATTAATTTCACTCATTTAAG+AGG - chr4_4:75058675-75058694 Msa0703230:three_prime_UTR 20.0%
!! AATATCATGTATAACATCAA+AGG + chr4_4:75059119-75059138 None:intergenic 20.0%
! ATTGTGAAAAACACTTTACT+CGG + chr4_4:75058324-75058343 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG - chr4_4:75058434-75058453 Msa0703230:three_prime_UTR 25.0%
! ATAAAGATTCAAAATGGTGA+AGG - chr4_4:75058440-75058459 Msa0703230:three_prime_UTR 25.0%
! AATATGGAAATTATCCGAAA+AGG + chr4_4:75058622-75058641 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG + chr4_4:75058717-75058736 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG + chr4_4:75058718-75058737 None:intergenic 25.0%
! TCACATGCTCAAATAAAATA+TGG - chr4_4:75059046-75059065 Msa0703230:intron 25.0%
! GCATTTCAAATTTAATTGAG+TGG - chr4_4:75059079-75059098 Msa0703230:intron 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG + chr4_4:75059271-75059290 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG - chr4_4:75059344-75059363 Msa0703230:CDS 25.0%
! TAACATAGGGAAATTATGTA+GGG + chr4_4:75059554-75059573 None:intergenic 25.0%
! ATAACATAGGGAAATTATGT+AGG + chr4_4:75059555-75059574 None:intergenic 25.0%
! ATTGTGAAAAACACTTTACT+CGG + chr4_4:75058324-75058343 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG - chr4_4:75058434-75058453 Msa0703230:three_prime_UTR 25.0%
! ATAAAGATTCAAAATGGTGA+AGG - chr4_4:75058440-75058459 Msa0703230:three_prime_UTR 25.0%
! AATATGGAAATTATCCGAAA+AGG + chr4_4:75058622-75058641 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG + chr4_4:75058717-75058736 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG + chr4_4:75058718-75058737 None:intergenic 25.0%
! TCACATGCTCAAATAAAATA+TGG - chr4_4:75059046-75059065 Msa0703230:intron 25.0%
! GCATTTCAAATTTAATTGAG+TGG - chr4_4:75059079-75059098 Msa0703230:intron 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG + chr4_4:75059271-75059290 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG - chr4_4:75059344-75059363 Msa0703230:CDS 25.0%
! TAACATAGGGAAATTATGTA+GGG + chr4_4:75059554-75059573 None:intergenic 25.0%
! ATAACATAGGGAAATTATGT+AGG + chr4_4:75059555-75059574 None:intergenic 25.0%
TTGTGAAAAACACTTTACTC+GGG + chr4_4:75058323-75058342 None:intergenic 30.0%
TGAAGAATTCGAAGAAGTAA+GGG + chr4_4:75058569-75058588 None:intergenic 30.0%
ATGAAGAATTCGAAGAAGTA+AGG + chr4_4:75058570-75058589 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG - chr4_4:75058605-75058624 Msa0703230:three_prime_UTR 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG - chr4_4:75058781-75058800 Msa0703230:three_prime_UTR 30.0%
! TATTGGCAAGTACCATTTTA+GGG + chr4_4:75059145-75059164 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG + chr4_4:75059146-75059165 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG + chr4_4:75059162-75059181 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG - chr4_4:75059195-75059214 Msa0703230:intron 30.0%
CCAAAAATAAGCAATGCAAA+CGG + chr4_4:75059245-75059264 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG - chr4_4:75059343-75059362 Msa0703230:CDS 30.0%
GAAAGCAAACATATACTCAA+AGG + chr4_4:75059415-75059434 None:intergenic 30.0%
ACGATAAAGAGATTGAAGAA+GGG + chr4_4:75059526-75059545 None:intergenic 30.0%
TTGTGAAAAACACTTTACTC+GGG + chr4_4:75058323-75058342 None:intergenic 30.0%
TGAAGAATTCGAAGAAGTAA+GGG + chr4_4:75058569-75058588 None:intergenic 30.0%
ATGAAGAATTCGAAGAAGTA+AGG + chr4_4:75058570-75058589 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG - chr4_4:75058605-75058624 Msa0703230:three_prime_UTR 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG - chr4_4:75058781-75058800 Msa0703230:three_prime_UTR 30.0%
! TATTGGCAAGTACCATTTTA+GGG + chr4_4:75059145-75059164 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG + chr4_4:75059146-75059165 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG + chr4_4:75059162-75059181 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG - chr4_4:75059195-75059214 Msa0703230:intron 30.0%
CCAAAAATAAGCAATGCAAA+CGG + chr4_4:75059245-75059264 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG - chr4_4:75059343-75059362 Msa0703230:CDS 30.0%
GAAAGCAAACATATACTCAA+AGG + chr4_4:75059415-75059434 None:intergenic 30.0%
ACGATAAAGAGATTGAAGAA+GGG + chr4_4:75059526-75059545 None:intergenic 30.0%
AAACTGAATCGAAGCAAAGA+AGG - chr4_4:75058408-75058427 Msa0703230:three_prime_UTR 35.0%
GAAGAATTCGAAGAAGTAAG+GGG + chr4_4:75058568-75058587 None:intergenic 35.0%
TACTTATGTGTGCAATGTTG+AGG - chr4_4:75058742-75058761 Msa0703230:three_prime_UTR 35.0%
GGGTCAGAGAACAATTAATT+CGG - chr4_4:75058924-75058943 Msa0703230:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG - chr4_4:75058925-75058944 Msa0703230:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG + chr4_4:75058957-75058976 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG + chr4_4:75059012-75059031 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG - chr4_4:75059130-75059149 Msa0703230:intron 35.0%
TGGTACTTGCCAATAATTGT+TGG - chr4_4:75059150-75059169 Msa0703230:intron 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG - chr4_4:75059242-75059261 Msa0703230:intron 35.0%
AGGATATGAAATATGCATCG+CGG + chr4_4:75059382-75059401 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG + chr4_4:75059402-75059421 None:intergenic 35.0%
CACGATAAAGAGATTGAAGA+AGG + chr4_4:75059527-75059546 None:intergenic 35.0%
AAACTGAATCGAAGCAAAGA+AGG - chr4_4:75058408-75058427 Msa0703230:three_prime_UTR 35.0%
GAAGAATTCGAAGAAGTAAG+GGG + chr4_4:75058568-75058587 None:intergenic 35.0%
TACTTATGTGTGCAATGTTG+AGG - chr4_4:75058742-75058761 Msa0703230:three_prime_UTR 35.0%
GGGTCAGAGAACAATTAATT+CGG - chr4_4:75058924-75058943 Msa0703230:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG - chr4_4:75058925-75058944 Msa0703230:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG + chr4_4:75058957-75058976 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG + chr4_4:75059012-75059031 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG - chr4_4:75059130-75059149 Msa0703230:intron 35.0%
TGGTACTTGCCAATAATTGT+TGG - chr4_4:75059150-75059169 Msa0703230:intron 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG - chr4_4:75059242-75059261 Msa0703230:intron 35.0%
AGGATATGAAATATGCATCG+CGG + chr4_4:75059382-75059401 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG + chr4_4:75059402-75059421 None:intergenic 35.0%
CACGATAAAGAGATTGAAGA+AGG + chr4_4:75059527-75059546 None:intergenic 35.0%
TTTACTCGGGCTCAAACTTT+CGG + chr4_4:75058310-75058329 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG + chr4_4:75058362-75058381 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG + chr4_4:75058363-75058382 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG - chr4_4:75058362-75058381 Msa0703230:three_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG - chr4_4:75058467-75058486 Msa0703230:three_prime_UTR 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG - chr4_4:75058494-75058513 Msa0703230:three_prime_UTR 40.0%
! GGTAACTGAGTTATTGACTG+TGG - chr4_4:75058763-75058782 Msa0703230:three_prime_UTR 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG - chr4_4:75059188-75059207 Msa0703230:intron 40.0%
! CTGTGTATTGGTATTTGGCT+CGG - chr4_4:75059200-75059219 Msa0703230:intron 40.0%
! TGTGTATTGGTATTTGGCTC+GGG - chr4_4:75059201-75059220 Msa0703230:intron 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG - chr4_4:75059284-75059303 Msa0703230:intron 40.0%
TCCACATCTCACACTTTCAA+AGG + chr4_4:75059288-75059307 None:intergenic 40.0%
ACACATGATCCCTACTAAGT+CGG + chr4_4:75059313-75059332 None:intergenic 40.0%
! ACATTTGTGGGCTATTGATC+TGG - chr4_4:75059356-75059375 Msa0703230:CDS 40.0%
AGATACATTTGCCTGCTTGT+TGG - chr4_4:75059460-75059479 Msa0703230:five_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG - chr4_4:75059461-75059480 Msa0703230:five_prime_UTR 40.0%
TTTACTCGGGCTCAAACTTT+CGG + chr4_4:75058310-75058329 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG + chr4_4:75058362-75058381 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG + chr4_4:75058363-75058382 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG - chr4_4:75058362-75058381 Msa0703230:three_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG - chr4_4:75058467-75058486 Msa0703230:three_prime_UTR 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG - chr4_4:75058494-75058513 Msa0703230:three_prime_UTR 40.0%
! GGTAACTGAGTTATTGACTG+TGG - chr4_4:75058763-75058782 Msa0703230:three_prime_UTR 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG - chr4_4:75059188-75059207 Msa0703230:intron 40.0%
! CTGTGTATTGGTATTTGGCT+CGG - chr4_4:75059200-75059219 Msa0703230:intron 40.0%
! TGTGTATTGGTATTTGGCTC+GGG - chr4_4:75059201-75059220 Msa0703230:intron 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG - chr4_4:75059284-75059303 Msa0703230:intron 40.0%
TCCACATCTCACACTTTCAA+AGG + chr4_4:75059288-75059307 None:intergenic 40.0%
ACACATGATCCCTACTAAGT+CGG + chr4_4:75059313-75059332 None:intergenic 40.0%
! ACATTTGTGGGCTATTGATC+TGG - chr4_4:75059356-75059375 Msa0703230:CDS 40.0%
AGATACATTTGCCTGCTTGT+TGG - chr4_4:75059460-75059479 Msa0703230:five_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG - chr4_4:75059461-75059480 Msa0703230:five_prime_UTR 40.0%
TCGTTGAGATGAGATGGGAA+GGG + chr4_4:75058357-75058376 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG + chr4_4:75058358-75058377 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG - chr4_4:75058456-75058475 Msa0703230:three_prime_UTR 45.0%
GTAATGTGTTGCAGCAAGAG+AGG - chr4_4:75058876-75058895 Msa0703230:three_prime_UTR 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG - chr4_4:75059301-75059320 Msa0703230:intron 45.0%
GACTTAGTAGGGATCATGTG+TGG - chr4_4:75059312-75059331 Msa0703230:intron 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG + chr4_4:75059474-75059493 None:intergenic 45.0%
TCGTTGAGATGAGATGGGAA+GGG + chr4_4:75058357-75058376 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG + chr4_4:75058358-75058377 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG - chr4_4:75058456-75058475 Msa0703230:three_prime_UTR 45.0%
GTAATGTGTTGCAGCAAGAG+AGG - chr4_4:75058876-75058895 Msa0703230:three_prime_UTR 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG - chr4_4:75059301-75059320 Msa0703230:intron 45.0%
GACTTAGTAGGGATCATGTG+TGG - chr4_4:75059312-75059331 Msa0703230:intron 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG + chr4_4:75059474-75059493 None:intergenic 45.0%
CCAGAAAACGAATGCTGCCA+AGG + chr4_4:75058487-75058506 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG - chr4_4:75058484-75058503 Msa0703230:three_prime_UTR 50.0%
CCAGACATGGACTTTGTCCA+TGG + chr4_4:75058514-75058533 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG - chr4_4:75058511-75058530 Msa0703230:three_prime_UTR 50.0%
GATGAAGAGCGATCCAGACA+TGG + chr4_4:75058527-75058546 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG - chr4_4:75058527-75058546 Msa0703230:three_prime_UTR 50.0%
CGCTCTTCATCAGGACGAAA+AGG - chr4_4:75058536-75058555 Msa0703230:three_prime_UTR 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG - chr4_4:75058880-75058899 Msa0703230:exon 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG - chr4_4:75058892-75058911 Msa0703230:exon 50.0%
AGAAGGAAGCGGAGATCAGA+AGG - chr4_4:75058903-75058922 Msa0703230:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG - chr4_4:75058904-75058923 Msa0703230:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG - chr4_4:75059300-75059319 Msa0703230:intron 50.0%
GGATCATGTGTGGAAGTTGC+TGG - chr4_4:75059322-75059341 Msa0703230:CDS 50.0%
CCAGAAAACGAATGCTGCCA+AGG + chr4_4:75058487-75058506 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG - chr4_4:75058484-75058503 Msa0703230:three_prime_UTR 50.0%
CCAGACATGGACTTTGTCCA+TGG + chr4_4:75058514-75058533 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG - chr4_4:75058511-75058530 Msa0703230:three_prime_UTR 50.0%
GATGAAGAGCGATCCAGACA+TGG + chr4_4:75058527-75058546 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG - chr4_4:75058527-75058546 Msa0703230:three_prime_UTR 50.0%
CGCTCTTCATCAGGACGAAA+AGG - chr4_4:75058536-75058555 Msa0703230:three_prime_UTR 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG - chr4_4:75058880-75058899 Msa0703230:exon 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG - chr4_4:75058892-75058911 Msa0703230:exon 50.0%
AGAAGGAAGCGGAGATCAGA+AGG - chr4_4:75058903-75058922 Msa0703230:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG - chr4_4:75058904-75058923 Msa0703230:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG - chr4_4:75059300-75059319 Msa0703230:intron 50.0%
GGATCATGTGTGGAAGTTGC+TGG - chr4_4:75059322-75059341 Msa0703230:CDS 50.0%
GCAGCAAGAGAGGTTGGAGA+AGG - chr4_4:75058886-75058905 Msa0703230:exon 55.0%
GCAGCAAGAGAGGTTGGAGA+AGG - chr4_4:75058886-75058905 Msa0703230:exon 55.0%
TCGGGAGCAAGCCAGTCAGA+AGG - chr4_4:75058943-75058962 Msa0703230:CDS 60.0%
TCGGGAGCAAGCCAGTCAGA+AGG - chr4_4:75058943-75058962 Msa0703230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 75058297 75059580 75058297 ID=Msa0703230;Name=Msa0703230
chr4_4 mRNA 75058297 75059580 75058297 ID=Msa0703230-mRNA-1;Parent=Msa0703230;Name=Msa0703230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|1|1|2|601|64
chr4_4 exon 75058297 75058987 75058297 ID=Msa0703230-mRNA-1:exon:23441;Parent=Msa0703230-mRNA-1
chr4_4 exon 75059320 75059580 75059320 ID=Msa0703230-mRNA-1:exon:23440;Parent=Msa0703230-mRNA-1
chr4_4 five_prime_UTR 75059425 75059580 75059425 ID=Msa0703230-mRNA-1:five_prime_utr;Parent=Msa0703230-mRNA-1
chr4_4 CDS 75059320 75059424 75059320 ID=Msa0703230-mRNA-1:cds;Parent=Msa0703230-mRNA-1
chr4_4 CDS 75058898 75058987 75058898 ID=Msa0703230-mRNA-1:cds;Parent=Msa0703230-mRNA-1
chr4_4 three_prime_UTR 75058297 75058897 75058297 ID=Msa0703230-mRNA-1:three_prime_utr;Parent=Msa0703230-mRNA-1
Gene Sequence

>Msa0703230

ATGGTGAAGGTTGCAACGTACTTTGGAATGTCCTTGGCAGCATTCGTTTTCTGGCAATCCATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAGGACGAAAAGCAAGAGAGGTTGGAGAAGGAAGCGGAGATCAGAAGGGTCAGAGAACAATTAATTCGGGAGCAAGCCAGTCAGAAGGATTCTTCATATTGA

Protein sequence

>Msa0703230

MVKVATYFGMSLAAFVFWQSMDKVHVWIALHQDEKQERLEKEAEIRRVREQLIREQASQKDSSY*