AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0186890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186890 MtrunA17_Chr8g0381271 100.000 64 0 0 1 64 1 64 4.47e-42 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186890 AT1G67785.1 77.419 62 13 1 1 62 1 61 2.32e-30 101

Find 62 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTGTTCCAACAATTAT+TGG 0.198021 2_1:+1650371 None:intergenic
TTTGTCTGTGTATTGGTATT+TGG 0.264190 2_1:-1650335 Msa0186890:three_prime_UTR
CATGATATTGCTCCCTAAAA+TGG 0.275849 2_1:-1650400 Msa0186890:three_prime_UTR
CAAAGGAAAATAAAGTTTCT+TGG 0.284054 2_1:+1650262 None:intergenic
TCACATGCTCAAATAAAATA+TGG 0.325073 2_1:-1650484 Msa0186890:three_prime_UTR
GATACATTTGCCTGCTTGTT+GGG 0.334856 2_1:-1650069 Msa0186890:three_prime_UTR
GGGTCAGAGAACAATTAATT+CGG 0.374447 2_1:-1650606 Msa0186890:CDS
TGCAGAATAAAGATTCAAAA+TGG 0.377318 2_1:-1651096 Msa0186890:exon
GAATTTAAGTCTACATTTGT+GGG 0.398198 2_1:-1650186 Msa0186890:three_prime_UTR
ACATTTGTGGGCTATTGATC+TGG 0.411130 2_1:-1650174 Msa0186890:three_prime_UTR
CGCTCTTCATCAGGACGAAA+AGG 0.423832 2_1:-1650994 Msa0186890:intron
GGAATTTAAGTCTACATTTG+TGG 0.424860 2_1:-1650187 Msa0186890:three_prime_UTR
ATTTCCCTATGTTATATTGA+CGG 0.428721 2_1:-1649970 None:intergenic
GTGAAGGTTGCAACGTACTT+TGG 0.431142 2_1:-1651074 Msa0186890:CDS
GGATCATGTGTGGAAGTTGC+TGG 0.438211 2_1:-1650208 Msa0186890:three_prime_UTR
CCATGGACAAAGTCCATGTC+TGG 0.443394 2_1:-1651019 Msa0186890:CDS
TGTCTGGATCGCTCTTCATC+AGG 0.451814 2_1:-1651003 Msa0186890:CDS
AGATACATTTGCCTGCTTGT+TGG 0.455588 2_1:-1650070 Msa0186890:three_prime_UTR
CACGATAAAGAGATTGAAGA+AGG 0.457718 2_1:+1650006 None:intergenic
CTGTGTATTGGTATTTGGCT+CGG 0.458423 2_1:-1650330 Msa0186890:three_prime_UTR
TTGATCCGTCAATATAACAT+AGG 0.459663 2_1:+1649965 None:intergenic
ATAACATAGGGAAATTATGT+AGG 0.467000 2_1:+1649978 None:intergenic
GGTCAGAGAACAATTAATTC+GGG 0.478951 2_1:-1650605 Msa0186890:CDS
TGGTACTTGCCAATAATTGT+TGG 0.479210 2_1:-1650380 Msa0186890:three_prime_UTR
ACTTCTTCGTTGAGATGAGA+TGG 0.481225 2_1:+1651170 None:intergenic
TACTCAAAGGAAATGACAAC+AGG 0.482928 2_1:+1650131 None:intergenic
TGATCCGTCAATATAACATA+GGG 0.490282 2_1:+1649966 None:intergenic
TCCACATCTCACACTTTCAA+AGG 0.490834 2_1:+1650245 None:intergenic
GATGTGGAAGCCGACTTAGT+AGG 0.491463 2_1:-1650230 Msa0186890:three_prime_UTR
AACGTACTTTGGAATGTCCT+TGG 0.500806 2_1:-1651063 Msa0186890:CDS
ATGTGGAAGCCGACTTAGTA+GGG 0.504314 2_1:-1650229 Msa0186890:three_prime_UTR
AGAAGGAAGCGGAGATCAGA+AGG 0.504547 2_1:-1650627 Msa0186890:CDS
TGTGTATTGGTATTTGGCTC+GGG 0.505124 2_1:-1650329 Msa0186890:three_prime_UTR
CCAGACATGGACTTTGTCCA+TGG 0.515687 2_1:+1651019 None:intergenic
GCATTTCAAATTTAATTGAG+TGG 0.516067 2_1:-1650451 Msa0186890:three_prime_UTR
TGGTCTATGTGAAATAATGA+TGG 0.527833 2_1:-1651247 None:intergenic
TGTGTTGCAGCAAGAGAGGT+TGG 0.535566 2_1:-1650650 Msa0186890:intron
TAACATAGGGAAATTATGTA+GGG 0.536962 2_1:+1649979 None:intergenic
TTCGTTGAGATGAGATGGGA+AGG 0.540040 2_1:+1651175 None:intergenic
TAATTTGCTGCCCAACAAGC+AGG 0.540779 2_1:+1650059 None:intergenic
AGAGAGGTTGGAGAAGGAAG+CGG 0.542879 2_1:-1650638 Msa0186890:CDS
ATCTCATCTCAACGAAGAAG+TGG 0.550078 2_1:-1651168 Msa0186890:five_prime_UTR
AAACTGAATCGAAGCAAAGA+AGG 0.560808 2_1:-1651122 Msa0186890:five_prime_UTR
CCAGAAAACGAATGCTGCCA+AGG 0.569490 2_1:+1651046 None:intergenic
ATATGAAGAATCCTTCTGAC+TGG 0.574630 2_1:+1650576 None:intergenic
CTTCTTCGTTGAGATGAGAT+GGG 0.578259 2_1:+1651171 None:intergenic
AATATCATGTATAACATCAA+AGG 0.580442 2_1:+1650414 None:intergenic
GAAAGCAAACATATACTCAA+AGG 0.581829 2_1:+1650118 None:intergenic
ATAAAGATTCAAAATGGTGA+AGG 0.596896 2_1:-1651090 Msa0186890:exon
ACGATAAAGAGATTGAAGAA+GGG 0.597047 2_1:+1650007 None:intergenic
GCAGCAAGAGAGGTTGGAGA+AGG 0.597767 2_1:-1650644 Msa0186890:intron
ACACATGATCCCTACTAAGT+CGG 0.610810 2_1:+1650220 None:intergenic
GATGAAGAGCGATCCAGACA+TGG 0.613241 2_1:+1651006 None:intergenic
TCGGGAGCAAGCCAGTCAGA+AGG 0.625525 2_1:-1650587 Msa0186890:CDS
CAAGAGAAATTACAAAGCAG+AGG 0.631364 2_1:+1650521 None:intergenic
GAAGGAAGCGGAGATCAGAA+GGG 0.632205 2_1:-1650626 Msa0186890:CDS
TCCTTTGAAAGTGTGAGATG+TGG 0.637352 2_1:-1650246 Msa0186890:three_prime_UTR
TCGTTGAGATGAGATGGGAA+GGG 0.656923 2_1:+1651176 None:intergenic
GGTCTATGTGAAATAATGAT+GGG 0.659362 2_1:-1651246 None:intergenic
GACTTAGTAGGGATCATGTG+TGG 0.660263 2_1:-1650218 Msa0186890:three_prime_UTR
GTAATGTGTTGCAGCAAGAG+AGG 0.669103 2_1:-1650654 Msa0186890:intron
AGGATATGAAATATGCATCG+CGG 0.738003 2_1:+1650151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTGTTATTTAAT+TGG - chr2_1:1650527-1650546 Msa0186890:three_prime_UTR 10.0%
!!! AATATTTTGTGTTATTTAAT+TGG - chr2_1:1650527-1650546 Msa0186890:three_prime_UTR 10.0%
!! AGTGAAATTGAAATTAAATA+TGG + chr2_1:1650313-1650332 None:intergenic 15.0%
!! AGTGAAATTGAAATTAAATA+TGG + chr2_1:1650313-1650332 None:intergenic 15.0%
!! ATTAATTTCACTCATTTAAG+AGG - chr2_1:1650350-1650369 Msa0186890:three_prime_UTR 20.0%
!! AATATCATGTATAACATCAA+AGG + chr2_1:1650794-1650813 None:intergenic 20.0%
!! ATTAATTTCACTCATTTAAG+AGG - chr2_1:1650350-1650369 Msa0186890:three_prime_UTR 20.0%
!! AATATCATGTATAACATCAA+AGG + chr2_1:1650794-1650813 None:intergenic 20.0%
!! ATTGTGAAAAACACTTTTCT+CGG + chr2_1:1649999-1650018 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG - chr2_1:1650109-1650128 Msa0186890:three_prime_UTR 25.0%
! ATAAAGATTCAAAATGGTGA+AGG - chr2_1:1650115-1650134 Msa0186890:three_prime_UTR 25.0%
! AATATGGAAATTATCCGAAA+AGG + chr2_1:1650297-1650316 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG + chr2_1:1650392-1650411 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG + chr2_1:1650393-1650412 None:intergenic 25.0%
! TCACATGCTCAAATAAAATA+TGG - chr2_1:1650721-1650740 Msa0186890:intron 25.0%
! GCATTTCAAATTTAATTGAG+TGG - chr2_1:1650754-1650773 Msa0186890:intron 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG + chr2_1:1650946-1650965 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG - chr2_1:1651019-1651038 Msa0186890:CDS 25.0%
! TAACATAGGGAAATTATGTA+GGG + chr2_1:1651229-1651248 None:intergenic 25.0%
! ATAACATAGGGAAATTATGT+AGG + chr2_1:1651230-1651249 None:intergenic 25.0%
!! ATTGTGAAAAACACTTTTCT+CGG + chr2_1:1649999-1650018 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG - chr2_1:1650109-1650128 Msa0186890:three_prime_UTR 25.0%
! ATAAAGATTCAAAATGGTGA+AGG - chr2_1:1650115-1650134 Msa0186890:three_prime_UTR 25.0%
! AATATGGAAATTATCCGAAA+AGG + chr2_1:1650297-1650316 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG + chr2_1:1650392-1650411 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG + chr2_1:1650393-1650412 None:intergenic 25.0%
! TCACATGCTCAAATAAAATA+TGG - chr2_1:1650721-1650740 Msa0186890:intron 25.0%
! GCATTTCAAATTTAATTGAG+TGG - chr2_1:1650754-1650773 Msa0186890:intron 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG + chr2_1:1650946-1650965 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG - chr2_1:1651019-1651038 Msa0186890:CDS 25.0%
! TAACATAGGGAAATTATGTA+GGG + chr2_1:1651229-1651248 None:intergenic 25.0%
! ATAACATAGGGAAATTATGT+AGG + chr2_1:1651230-1651249 None:intergenic 25.0%
! TTGTGAAAAACACTTTTCTC+GGG + chr2_1:1649998-1650017 None:intergenic 30.0%
TGAAGAATTCGAAGAAGTAA+GGG + chr2_1:1650244-1650263 None:intergenic 30.0%
ATGAAGAATTCGAAGAAGTA+AGG + chr2_1:1650245-1650264 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG - chr2_1:1650280-1650299 Msa0186890:three_prime_UTR 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG - chr2_1:1650456-1650475 Msa0186890:three_prime_UTR 30.0%
! TATTGGCAAGTACCATTTTA+GGG + chr2_1:1650820-1650839 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG + chr2_1:1650821-1650840 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG + chr2_1:1650837-1650856 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG - chr2_1:1650870-1650889 Msa0186890:intron 30.0%
CCAAAAATAAGCAATGCAAA+CGG + chr2_1:1650920-1650939 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG - chr2_1:1651018-1651037 Msa0186890:CDS 30.0%
GAAAGCAAACATATACTCAA+AGG + chr2_1:1651090-1651109 None:intergenic 30.0%
ACGATAAAGAGATTGAAGAA+GGG + chr2_1:1651201-1651220 None:intergenic 30.0%
! TTGTGAAAAACACTTTTCTC+GGG + chr2_1:1649998-1650017 None:intergenic 30.0%
TGAAGAATTCGAAGAAGTAA+GGG + chr2_1:1650244-1650263 None:intergenic 30.0%
ATGAAGAATTCGAAGAAGTA+AGG + chr2_1:1650245-1650264 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG - chr2_1:1650280-1650299 Msa0186890:three_prime_UTR 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG - chr2_1:1650456-1650475 Msa0186890:three_prime_UTR 30.0%
! TATTGGCAAGTACCATTTTA+GGG + chr2_1:1650820-1650839 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG + chr2_1:1650821-1650840 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG + chr2_1:1650837-1650856 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG - chr2_1:1650870-1650889 Msa0186890:intron 30.0%
CCAAAAATAAGCAATGCAAA+CGG + chr2_1:1650920-1650939 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG - chr2_1:1651018-1651037 Msa0186890:CDS 30.0%
GAAAGCAAACATATACTCAA+AGG + chr2_1:1651090-1651109 None:intergenic 30.0%
ACGATAAAGAGATTGAAGAA+GGG + chr2_1:1651201-1651220 None:intergenic 30.0%
AAACTGAATCGAAGCAAAGA+AGG - chr2_1:1650083-1650102 Msa0186890:three_prime_UTR 35.0%
GAAGAATTCGAAGAAGTAAG+GGG + chr2_1:1650243-1650262 None:intergenic 35.0%
TACTTATGTGTGCAATGTTG+AGG - chr2_1:1650417-1650436 Msa0186890:three_prime_UTR 35.0%
GGGTCAGAGAACAATTAATT+CGG - chr2_1:1650599-1650618 Msa0186890:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG - chr2_1:1650600-1650619 Msa0186890:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG + chr2_1:1650632-1650651 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG + chr2_1:1650687-1650706 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG - chr2_1:1650805-1650824 Msa0186890:intron 35.0%
TGGTACTTGCCAATAATTGT+TGG - chr2_1:1650825-1650844 Msa0186890:intron 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG - chr2_1:1650917-1650936 Msa0186890:intron 35.0%
AGGATATGAAATATGCATCG+CGG + chr2_1:1651057-1651076 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG + chr2_1:1651077-1651096 None:intergenic 35.0%
CACGATAAAGAGATTGAAGA+AGG + chr2_1:1651202-1651221 None:intergenic 35.0%
AAACTGAATCGAAGCAAAGA+AGG - chr2_1:1650083-1650102 Msa0186890:three_prime_UTR 35.0%
GAAGAATTCGAAGAAGTAAG+GGG + chr2_1:1650243-1650262 None:intergenic 35.0%
TACTTATGTGTGCAATGTTG+AGG - chr2_1:1650417-1650436 Msa0186890:three_prime_UTR 35.0%
GGGTCAGAGAACAATTAATT+CGG - chr2_1:1650599-1650618 Msa0186890:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG - chr2_1:1650600-1650619 Msa0186890:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG + chr2_1:1650632-1650651 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG + chr2_1:1650687-1650706 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG - chr2_1:1650805-1650824 Msa0186890:intron 35.0%
TGGTACTTGCCAATAATTGT+TGG - chr2_1:1650825-1650844 Msa0186890:intron 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG - chr2_1:1650917-1650936 Msa0186890:intron 35.0%
AGGATATGAAATATGCATCG+CGG + chr2_1:1651057-1651076 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG + chr2_1:1651077-1651096 None:intergenic 35.0%
CACGATAAAGAGATTGAAGA+AGG + chr2_1:1651202-1651221 None:intergenic 35.0%
! TTTTCTCGGGCTCAAACTTT+CGG + chr2_1:1649985-1650004 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG + chr2_1:1650037-1650056 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG + chr2_1:1650038-1650057 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG - chr2_1:1650037-1650056 Msa0186890:three_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG - chr2_1:1650142-1650161 Msa0186890:three_prime_UTR 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG - chr2_1:1650169-1650188 Msa0186890:three_prime_UTR 40.0%
! GGTAACTGAGTTATTGACTG+TGG - chr2_1:1650438-1650457 Msa0186890:three_prime_UTR 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG - chr2_1:1650863-1650882 Msa0186890:intron 40.0%
! CTGTGTATTGGTATTTGGCT+CGG - chr2_1:1650875-1650894 Msa0186890:intron 40.0%
! TGTGTATTGGTATTTGGCTC+GGG - chr2_1:1650876-1650895 Msa0186890:intron 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG - chr2_1:1650959-1650978 Msa0186890:intron 40.0%
TCCACATCTCACACTTTCAA+AGG + chr2_1:1650963-1650982 None:intergenic 40.0%
ACACATGATCCCTACTAAGT+CGG + chr2_1:1650988-1651007 None:intergenic 40.0%
! ACATTTGTGGGCTATTGATC+TGG - chr2_1:1651031-1651050 Msa0186890:CDS 40.0%
AGATACATTTGCCTGCTTGT+TGG - chr2_1:1651135-1651154 Msa0186890:five_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG - chr2_1:1651136-1651155 Msa0186890:five_prime_UTR 40.0%
! TTTTCTCGGGCTCAAACTTT+CGG + chr2_1:1649985-1650004 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG + chr2_1:1650037-1650056 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG + chr2_1:1650038-1650057 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG - chr2_1:1650037-1650056 Msa0186890:three_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG - chr2_1:1650142-1650161 Msa0186890:three_prime_UTR 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG - chr2_1:1650169-1650188 Msa0186890:three_prime_UTR 40.0%
! GGTAACTGAGTTATTGACTG+TGG - chr2_1:1650438-1650457 Msa0186890:three_prime_UTR 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG - chr2_1:1650863-1650882 Msa0186890:intron 40.0%
! CTGTGTATTGGTATTTGGCT+CGG - chr2_1:1650875-1650894 Msa0186890:intron 40.0%
! TGTGTATTGGTATTTGGCTC+GGG - chr2_1:1650876-1650895 Msa0186890:intron 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG - chr2_1:1650959-1650978 Msa0186890:intron 40.0%
TCCACATCTCACACTTTCAA+AGG + chr2_1:1650963-1650982 None:intergenic 40.0%
ACACATGATCCCTACTAAGT+CGG + chr2_1:1650988-1651007 None:intergenic 40.0%
! ACATTTGTGGGCTATTGATC+TGG - chr2_1:1651031-1651050 Msa0186890:CDS 40.0%
AGATACATTTGCCTGCTTGT+TGG - chr2_1:1651135-1651154 Msa0186890:five_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG - chr2_1:1651136-1651155 Msa0186890:five_prime_UTR 40.0%
TCGTTGAGATGAGATGGGAA+GGG + chr2_1:1650032-1650051 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG + chr2_1:1650033-1650052 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG - chr2_1:1650131-1650150 Msa0186890:three_prime_UTR 45.0%
GTAATGTGTTGCAGCAAGAG+AGG - chr2_1:1650551-1650570 Msa0186890:three_prime_UTR 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG - chr2_1:1650976-1650995 Msa0186890:intron 45.0%
GACTTAGTAGGGATCATGTG+TGG - chr2_1:1650987-1651006 Msa0186890:intron 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG + chr2_1:1651149-1651168 None:intergenic 45.0%
TCGTTGAGATGAGATGGGAA+GGG + chr2_1:1650032-1650051 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG + chr2_1:1650033-1650052 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG - chr2_1:1650131-1650150 Msa0186890:three_prime_UTR 45.0%
GTAATGTGTTGCAGCAAGAG+AGG - chr2_1:1650551-1650570 Msa0186890:three_prime_UTR 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG - chr2_1:1650976-1650995 Msa0186890:intron 45.0%
GACTTAGTAGGGATCATGTG+TGG - chr2_1:1650987-1651006 Msa0186890:intron 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG + chr2_1:1651149-1651168 None:intergenic 45.0%
CCAGAAAACGAATGCTGCCA+AGG + chr2_1:1650162-1650181 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG - chr2_1:1650159-1650178 Msa0186890:three_prime_UTR 50.0%
CCAGACATGGACTTTGTCCA+TGG + chr2_1:1650189-1650208 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG - chr2_1:1650186-1650205 Msa0186890:three_prime_UTR 50.0%
GATGAAGAGCGATCCAGACA+TGG + chr2_1:1650202-1650221 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG - chr2_1:1650202-1650221 Msa0186890:three_prime_UTR 50.0%
CGCTCTTCATCAGGACGAAA+AGG - chr2_1:1650211-1650230 Msa0186890:three_prime_UTR 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG - chr2_1:1650555-1650574 Msa0186890:exon 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG - chr2_1:1650567-1650586 Msa0186890:exon 50.0%
AGAAGGAAGCGGAGATCAGA+AGG - chr2_1:1650578-1650597 Msa0186890:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG - chr2_1:1650579-1650598 Msa0186890:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG - chr2_1:1650975-1650994 Msa0186890:intron 50.0%
GGATCATGTGTGGAAGTTGC+TGG - chr2_1:1650997-1651016 Msa0186890:CDS 50.0%
CCAGAAAACGAATGCTGCCA+AGG + chr2_1:1650162-1650181 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG - chr2_1:1650159-1650178 Msa0186890:three_prime_UTR 50.0%
CCAGACATGGACTTTGTCCA+TGG + chr2_1:1650189-1650208 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG - chr2_1:1650186-1650205 Msa0186890:three_prime_UTR 50.0%
GATGAAGAGCGATCCAGACA+TGG + chr2_1:1650202-1650221 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG - chr2_1:1650202-1650221 Msa0186890:three_prime_UTR 50.0%
CGCTCTTCATCAGGACGAAA+AGG - chr2_1:1650211-1650230 Msa0186890:three_prime_UTR 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG - chr2_1:1650555-1650574 Msa0186890:exon 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG - chr2_1:1650567-1650586 Msa0186890:exon 50.0%
AGAAGGAAGCGGAGATCAGA+AGG - chr2_1:1650578-1650597 Msa0186890:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG - chr2_1:1650579-1650598 Msa0186890:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG - chr2_1:1650975-1650994 Msa0186890:intron 50.0%
GGATCATGTGTGGAAGTTGC+TGG - chr2_1:1650997-1651016 Msa0186890:CDS 50.0%
GCAGCAAGAGAGGTTGGAGA+AGG - chr2_1:1650561-1650580 Msa0186890:exon 55.0%
GCAGCAAGAGAGGTTGGAGA+AGG - chr2_1:1650561-1650580 Msa0186890:exon 55.0%
TCGGGAGCAAGCCAGTCAGA+AGG - chr2_1:1650618-1650637 Msa0186890:CDS 60.0%
TCGGGAGCAAGCCAGTCAGA+AGG - chr2_1:1650618-1650637 Msa0186890:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 1649972 1651255 1649972 ID=Msa0186890;Name=Msa0186890
chr2_1 mRNA 1649972 1651255 1649972 ID=Msa0186890-mRNA-1;Parent=Msa0186890;Name=Msa0186890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|1|0.5|2|601|64
chr2_1 exon 1649972 1650662 1649972 ID=Msa0186890-mRNA-1:exon:703;Parent=Msa0186890-mRNA-1
chr2_1 exon 1650995 1651255 1650995 ID=Msa0186890-mRNA-1:exon:702;Parent=Msa0186890-mRNA-1
chr2_1 five_prime_UTR 1651100 1651255 1651100 ID=Msa0186890-mRNA-1:five_prime_utr;Parent=Msa0186890-mRNA-1
chr2_1 CDS 1650995 1651099 1650995 ID=Msa0186890-mRNA-1:cds;Parent=Msa0186890-mRNA-1
chr2_1 CDS 1650573 1650662 1650573 ID=Msa0186890-mRNA-1:cds;Parent=Msa0186890-mRNA-1
chr2_1 three_prime_UTR 1649972 1650572 1649972 ID=Msa0186890-mRNA-1:three_prime_utr;Parent=Msa0186890-mRNA-1
Gene Sequence

>Msa0186890

ATGGTGAAGGTTGCAACGTACTTTGGAATGTCCTTGGCAGCATTCGTTTTCTGGCAATCCATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAGGACGAAAAGCAAGAGAGGTTGGAGAAGGAAGCGGAGATCAGAAGGGTCAGAGAACAATTAATTCGGGAGCAAGCCAGTCAGAAGGATTCTTCATATTGA

Protein sequence

>Msa0186890

MVKVATYFGMSLAAFVFWQSMDKVHVWIALHQDEKQERLEKEAEIRRVREQLIREQASQKDSSY*