Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343210 | XP_003593348.1 | 95.067 | 223 | 11 | 0 | 1 | 223 | 486 | 708 | 7.51e-146 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343210 | G7IFC1 | 95.067 | 223 | 11 | 0 | 1 | 223 | 486 | 708 | 3.59e-146 | 433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027280 | Msa1343210 | 0.836154 | 1.105177e-56 | -8.615850e-47 |
| Msa0048510 | Msa1343210 | 0.800485 | 1.409717e-48 | -8.615850e-47 |
| Msa0054690 | Msa1343210 | 0.808347 | 3.238011e-50 | -8.615850e-47 |
| Msa0068150 | Msa1343210 | 0.803248 | 3.816683e-49 | -8.615850e-47 |
| Msa0081980 | Msa1343210 | 0.803389 | 3.568295e-49 | -8.615850e-47 |
| Msa0621710 | Msa1343210 | 0.804856 | 1.766666e-49 | -8.615850e-47 |
| Msa0658640 | Msa1343210 | 0.827970 | 1.165871e-54 | -8.615850e-47 |
| Msa0661150 | Msa1343210 | 0.811618 | 6.397981e-51 | -8.615850e-47 |
| Msa0666700 | Msa1343210 | 0.822017 | 2.966973e-53 | -8.615850e-47 |
| Msa0703600 | Msa1343210 | 0.819649 | 1.039574e-52 | -8.615850e-47 |
| Msa0709200 | Msa1343210 | 0.821001 | 5.091129e-53 | -8.615850e-47 |
| Msa0709440 | Msa1343210 | 0.804800 | 1.814915e-49 | -8.615850e-47 |
| Msa0735780 | Msa1343210 | 0.814092 | 1.837324e-51 | -8.615850e-47 |
| Msa0740710 | Msa1343210 | 0.807280 | 5.460311e-50 | -8.615850e-47 |
| Msa0761670 | Msa1343210 | 0.813789 | 2.142077e-51 | -8.615850e-47 |
| Msa0773630 | Msa1343210 | 0.811872 | 5.634078e-51 | -8.615850e-47 |
| Msa0780910 | Msa1343210 | 0.804049 | 2.603201e-49 | -8.615850e-47 |
| Msa0795870 | Msa1343210 | 0.813362 | 2.660272e-51 | -8.615850e-47 |
| Msa0824450 | Msa1343210 | 0.816340 | 5.815306e-52 | -8.615850e-47 |
| Msa0833650 | Msa1343210 | 0.818757 | 1.659463e-52 | -8.615850e-47 |
| Msa0121330 | Msa1343210 | 0.802972 | 4.353253e-49 | -8.615850e-47 |
| Msa0123070 | Msa1343210 | 0.824917 | 6.225394e-54 | -8.615850e-47 |
| Msa0174290 | Msa1343210 | 0.804426 | 2.172188e-49 | -8.615850e-47 |
| Msa0190570 | Msa1343210 | 0.878859 | 1.996418e-69 | -8.615850e-47 |
| Msa0200050 | Msa1343210 | 0.820659 | 6.101885e-53 | -8.615850e-47 |
| Msa0225860 | Msa1343210 | 0.803972 | 2.700497e-49 | -8.615850e-47 |
| Msa1226520 | Msa1343210 | 0.827636 | 1.402168e-54 | -8.615850e-47 |
| Msa1343170 | Msa1343210 | 0.860772 | 1.635889e-63 | -8.615850e-47 |
| Msa1343180 | Msa1343210 | 0.904148 | 1.661296e-79 | -8.615850e-47 |
| Msa1343210 | Msa1397400 | 0.805894 | 1.070866e-49 | -8.615850e-47 |
| Msa1343210 | Msa1450190 | 0.818475 | 1.922678e-52 | -8.615850e-47 |
| Msa0430300 | Msa1343210 | 0.806162 | 9.405713e-50 | -8.615850e-47 |
| Msa0433150 | Msa1343210 | 0.805064 | 1.598480e-49 | -8.615850e-47 |
| Msa0481890 | Msa1343210 | 0.802455 | 5.565706e-49 | -8.615850e-47 |
| Msa0997920 | Msa1343210 | 0.831260 | 1.846196e-55 | -8.615850e-47 |
| Msa1081390 | Msa1343210 | 0.837691 | 4.477506e-57 | -8.615850e-47 |
| Msa1084530 | Msa1343210 | 0.806212 | 9.178340e-50 | -8.615850e-47 |
| Msa0242590 | Msa1343210 | 0.817590 | 3.048193e-52 | -8.615850e-47 |
| Msa0280790 | Msa1343210 | 0.818591 | 1.809943e-52 | -8.615850e-47 |
| Msa0298470 | Msa1343210 | 0.820821 | 5.600369e-53 | -8.615850e-47 |
| Msa0340500 | Msa1343210 | 0.800975 | 1.119877e-48 | -8.615850e-47 |
| Msa1116220 | Msa1343210 | 0.832366 | 9.846424e-56 | -8.615850e-47 |
| Msa1116660 | Msa1343210 | 0.817929 | 2.555603e-52 | -8.615850e-47 |
| Msa1125820 | Msa1343210 | 0.807877 | 4.077167e-50 | -8.615850e-47 |
| Msa1125990 | Msa1343210 | 0.810218 | 1.285576e-50 | -8.615850e-47 |
| Msa1132530 | Msa1343210 | 0.811900 | 5.554709e-51 | -8.615850e-47 |
| Msa1132840 | Msa1343210 | 0.809616 | 1.732494e-50 | -8.615850e-47 |
| Msa1171290 | Msa1343210 | 0.803224 | 3.860544e-49 | -8.615850e-47 |
| Msa0524520 | Msa1343210 | 0.816179 | 6.319212e-52 | -8.615850e-47 |
| Msa0531960 | Msa1343210 | 0.808722 | 2.693242e-50 | -8.615850e-47 |
| Msa0563740 | Msa1343210 | 0.808440 | 3.093592e-50 | -8.615850e-47 |
| Msa0567170 | Msa1343210 | 0.828957 | 6.734803e-55 | -8.615850e-47 |
| Msa0580370 | Msa1343210 | 0.811700 | 6.141213e-51 | -8.615850e-47 |
| Msa0843050 | Msa1343210 | 0.808194 | 3.491734e-50 | -8.615850e-47 |
| Msa0855230 | Msa1343210 | 0.804405 | 2.194584e-49 | -8.615850e-47 |
| Msa0909760 | Msa1343210 | 0.813629 | 2.323716e-51 | -8.615850e-47 |
| Msa0915520 | Msa1343210 | 0.822803 | 1.947970e-53 | -8.615850e-47 |
| Msa0966320 | Msa1343210 | 0.820026 | 8.525390e-53 | -8.615850e-47 |
| Msa0966480 | Msa1343210 | 0.822863 | 1.886877e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343210 | MtrunA17_Chr2g0280221 | 95.067 | 223 | 11 | 0 | 1 | 223 | 486 | 708 | 6.91e-150 | 433 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTACGTTGCATCATTT+TGG | 0.140284 | tig0006328:-25724 | None:intergenic |
| ACATGGAGACTATGAAATTT+TGG | 0.242997 | tig0006328:-26019 | None:intergenic |
| TCTTAAATTTCCAACCTTAG+AGG | 0.311423 | tig0006328:-25753 | None:intergenic |
| TCATATCTAAGTTGGTTTCC+TGG | 0.321011 | tig0006328:-26059 | None:intergenic |
| CGTGGCTTTGTTGTTTCCTT+TGG | 0.324727 | tig0006328:-25941 | None:intergenic |
| TTTAGCAGTGATTTCTTTCA+AGG | 0.356949 | tig0006328:-25249 | None:intergenic |
| TTCCTGGTGGTGCAGCTCTT+AGG | 0.360501 | tig0006328:-26043 | None:intergenic |
| GTAATGTTGTAATGCCTCTA+AGG | 0.361643 | tig0006328:+25739 | Msa1343210:CDS |
| CTTAAACGGCTTAGGATTTG+TGG | 0.393734 | tig0006328:-25071 | None:intergenic |
| CTTGCAACAGCTTGTAAACT+AGG | 0.395460 | tig0006328:+25884 | Msa1343210:CDS |
| ACATCAGTTCTGAACTTAAA+CGG | 0.420367 | tig0006328:-25085 | None:intergenic |
| TTAGAACCAGGATTTCTGTT+AGG | 0.420665 | tig0006328:-25657 | None:intergenic |
| TACTACATTCATATCTAAGT+TGG | 0.426218 | tig0006328:-26067 | None:intergenic |
| AAATCTACATCGACAACAAC+TGG | 0.434150 | tig0006328:+25016 | Msa1343210:CDS |
| ACTTCAGAAACATGTTGATC+TGG | 0.443215 | tig0006328:+25680 | Msa1343210:CDS |
| TTAAACGGCTTAGGATTTGT+GGG | 0.455528 | tig0006328:-25070 | None:intergenic |
| GTTCTGAACTTAAACGGCTT+AGG | 0.465133 | tig0006328:-25079 | None:intergenic |
| AAAGAAATCACTGCTAAAGA+TGG | 0.476812 | tig0006328:+25254 | Msa1343210:CDS |
| AATTCTCAAAGAAGCAAAGC+TGG | 0.494890 | tig0006328:+25208 | Msa1343210:CDS |
| TATATGAATGAAGCTAATAC+AGG | 0.516332 | tig0006328:-26208 | None:intergenic |
| ATGCATCTTGTTCGCAAGGA+AGG | 0.532188 | tig0006328:+25972 | Msa1343210:CDS |
| TGCCTAAGAGCTGCACCACC+AGG | 0.532780 | tig0006328:+26041 | Msa1343210:CDS |
| AAAACACCTAACAGAAATCC+TGG | 0.537750 | tig0006328:+25651 | Msa1343210:CDS |
| GATATGAATGTAGTAGAGCT+TGG | 0.545897 | tig0006328:+26075 | Msa1343210:exon |
| AATGATGCATCTTGTTCGCA+AGG | 0.550245 | tig0006328:+25968 | Msa1343210:CDS |
| TTAGCAGTGATTTCTTTCAA+GGG | 0.566621 | tig0006328:-25248 | None:intergenic |
| TGTTTCTGAAGTTTAGAACC+AGG | 0.570136 | tig0006328:-25669 | None:intergenic |
| ATTGTAATGCTGCAGGAAAG+GGG | 0.604562 | tig0006328:+25185 | Msa1343210:intron |
| TGGTGCAGCTCTTAGGCACA+TGG | 0.613861 | tig0006328:-26036 | None:intergenic |
| TTCAGACACTGTAAAACCAA+AGG | 0.617882 | tig0006328:+25925 | Msa1343210:CDS |
| GAGAACTTTGACTGTCCCAA+AGG | 0.620794 | tig0006328:+25994 | Msa1343210:CDS |
| TATCTAAGTTGGTTTCCTGG+TGG | 0.622856 | tig0006328:-26056 | None:intergenic |
| ATTAGCTTCATTCATATACG+AGG | 0.669464 | tig0006328:+26213 | Msa1343210:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCAATCTATTATAATA+TGG | + | tig0006328:25788-25807 | Msa1343210:intron | 10.0% |
| !!! | ATTTTCAATCTATTATAATA+TGG | + | tig0006328:25788-25807 | Msa1343210:intron | 10.0% |
| !! | ATACAAAAACAAATAATGAA+AGG | - | tig0006328:25340-25359 | None:intergenic | 15.0% |
| !!! | TTGCTTAATATGTTTTTTAA+AGG | + | tig0006328:25538-25557 | Msa1343210:intron | 15.0% |
| !! | AAAACGAAAAACATTTAATT+TGG | + | tig0006328:26274-26293 | Msa1343210:three_prime_UTR | 15.0% |
| !! | ATACAAAAACAAATAATGAA+AGG | - | tig0006328:25340-25359 | None:intergenic | 15.0% |
| !!! | TTGCTTAATATGTTTTTTAA+AGG | + | tig0006328:25538-25557 | Msa1343210:intron | 15.0% |
| !! | AAAACGAAAAACATTTAATT+TGG | + | tig0006328:26274-26293 | Msa1343210:three_prime_UTR | 15.0% |
| !! | ATCTATTATAATATGGTCTT+TGG | + | tig0006328:25795-25814 | Msa1343210:intron | 20.0% |
| !! | ATCTATTATAATATGGTCTT+TGG | + | tig0006328:25795-25814 | Msa1343210:intron | 20.0% |
| !! | AAATAATGAAAGGTTGATTG+AGG | - | tig0006328:25330-25349 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTTGAGTTGTT+CGG | - | tig0006328:25464-25483 | None:intergenic | 25.0% |
| !!! | AATATGTTTTTTAAAGGCAG+TGG | + | tig0006328:25544-25563 | Msa1343210:intron | 25.0% |
| !!! | TATAATATGGTCTTTGGAAT+TGG | + | tig0006328:25801-25820 | Msa1343210:intron | 25.0% |
| !!! | ATAATATGGTCTTTGGAATT+GGG | + | tig0006328:25802-25821 | Msa1343210:intron | 25.0% |
| !!! | TATGAAATTTTGGTTCCTTT+GGG | - | tig0006328:26012-26031 | None:intergenic | 25.0% |
| ! | TACTACATTCATATCTAAGT+TGG | - | tig0006328:26070-26089 | None:intergenic | 25.0% |
| ! | AAAAAATTCATCTATCTAGC+AGG | - | tig0006328:26177-26196 | None:intergenic | 25.0% |
| ! | TATATGAATGAAGCTAATAC+AGG | - | tig0006328:26211-26230 | None:intergenic | 25.0% |
| !! | AAATAATGAAAGGTTGATTG+AGG | - | tig0006328:25330-25349 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTTGAGTTGTT+CGG | - | tig0006328:25464-25483 | None:intergenic | 25.0% |
| !!! | AATATGTTTTTTAAAGGCAG+TGG | + | tig0006328:25544-25563 | Msa1343210:intron | 25.0% |
| !!! | TATAATATGGTCTTTGGAAT+TGG | + | tig0006328:25801-25820 | Msa1343210:intron | 25.0% |
| !!! | ATAATATGGTCTTTGGAATT+GGG | + | tig0006328:25802-25821 | Msa1343210:intron | 25.0% |
| !!! | TATGAAATTTTGGTTCCTTT+GGG | - | tig0006328:26012-26031 | None:intergenic | 25.0% |
| ! | TACTACATTCATATCTAAGT+TGG | - | tig0006328:26070-26089 | None:intergenic | 25.0% |
| ! | AAAAAATTCATCTATCTAGC+AGG | - | tig0006328:26177-26196 | None:intergenic | 25.0% |
| ! | TATATGAATGAAGCTAATAC+AGG | - | tig0006328:26211-26230 | None:intergenic | 25.0% |
| !! | ACATCAGTTCTGAACTTAAA+CGG | - | tig0006328:25088-25107 | None:intergenic | 30.0% |
| TTCAGAACTGATGTAAGTAA+GGG | + | tig0006328:25094-25113 | Msa1343210:intron | 30.0% | |
| ATGATATATTGTAATGCTGC+AGG | + | tig0006328:25178-25197 | Msa1343210:intron | 30.0% | |
| TTAGCAGTGATTTCTTTCAA+GGG | - | tig0006328:25251-25270 | None:intergenic | 30.0% | |
| TTTAGCAGTGATTTCTTTCA+AGG | - | tig0006328:25252-25271 | None:intergenic | 30.0% | |
| AAAGAAATCACTGCTAAAGA+TGG | + | tig0006328:25254-25273 | Msa1343210:CDS | 30.0% | |
| ACAAGTTTCATTCTTCTGAA+AGG | - | tig0006328:25391-25410 | None:intergenic | 30.0% | |
| ACTGTAAGTTAATGCACATA+AGG | + | tig0006328:25483-25502 | Msa1343210:intron | 30.0% | |
| TATTAAGCAAGCAGTAATTC+AGG | - | tig0006328:25528-25547 | None:intergenic | 30.0% | |
| ! | ACTTCCTCAAAATTTTGTGT+AGG | + | tig0006328:25572-25591 | Msa1343210:intron | 30.0% |
| ! | CTTCCTCAAAATTTTGTGTA+GGG | + | tig0006328:25573-25592 | Msa1343210:intron | 30.0% |
| ! | TTTCCCTACACAAAATTTTG+AGG | - | tig0006328:25579-25598 | None:intergenic | 30.0% |
| ! | AACATTACGTTGCATCATTT+TGG | - | tig0006328:25727-25746 | None:intergenic | 30.0% |
| TCTTAAATTTCCAACCTTAG+AGG | - | tig0006328:25756-25775 | None:intergenic | 30.0% | |
| !!! | CTATGAAATTTTGGTTCCTT+TGG | - | tig0006328:26013-26032 | None:intergenic | 30.0% |
| ! | ACATGGAGACTATGAAATTT+TGG | - | tig0006328:26022-26041 | None:intergenic | 30.0% |
| ! | GATCATTGAATTTTGTTGAG+TGG | + | tig0006328:26111-26130 | Msa1343210:three_prime_UTR | 30.0% |
| ! | TGAATTTTGTTGAGTGGTTT+TGG | + | tig0006328:26117-26136 | Msa1343210:three_prime_UTR | 30.0% |
| ! | ATTAGCTTCATTCATATACG+AGG | + | tig0006328:26213-26232 | Msa1343210:three_prime_UTR | 30.0% |
| !! | ACATCAGTTCTGAACTTAAA+CGG | - | tig0006328:25088-25107 | None:intergenic | 30.0% |
| TTCAGAACTGATGTAAGTAA+GGG | + | tig0006328:25094-25113 | Msa1343210:intron | 30.0% | |
| ATGATATATTGTAATGCTGC+AGG | + | tig0006328:25178-25197 | Msa1343210:intron | 30.0% | |
| TTAGCAGTGATTTCTTTCAA+GGG | - | tig0006328:25251-25270 | None:intergenic | 30.0% | |
| TTTAGCAGTGATTTCTTTCA+AGG | - | tig0006328:25252-25271 | None:intergenic | 30.0% | |
| AAAGAAATCACTGCTAAAGA+TGG | + | tig0006328:25254-25273 | Msa1343210:CDS | 30.0% | |
| ACAAGTTTCATTCTTCTGAA+AGG | - | tig0006328:25391-25410 | None:intergenic | 30.0% | |
| ACTGTAAGTTAATGCACATA+AGG | + | tig0006328:25483-25502 | Msa1343210:intron | 30.0% | |
| TATTAAGCAAGCAGTAATTC+AGG | - | tig0006328:25528-25547 | None:intergenic | 30.0% | |
| ! | ACTTCCTCAAAATTTTGTGT+AGG | + | tig0006328:25572-25591 | Msa1343210:intron | 30.0% |
| ! | CTTCCTCAAAATTTTGTGTA+GGG | + | tig0006328:25573-25592 | Msa1343210:intron | 30.0% |
| ! | TTTCCCTACACAAAATTTTG+AGG | - | tig0006328:25579-25598 | None:intergenic | 30.0% |
| ! | AACATTACGTTGCATCATTT+TGG | - | tig0006328:25727-25746 | None:intergenic | 30.0% |
| TCTTAAATTTCCAACCTTAG+AGG | - | tig0006328:25756-25775 | None:intergenic | 30.0% | |
| !!! | CTATGAAATTTTGGTTCCTT+TGG | - | tig0006328:26013-26032 | None:intergenic | 30.0% |
| ! | ACATGGAGACTATGAAATTT+TGG | - | tig0006328:26022-26041 | None:intergenic | 30.0% |
| ! | GATCATTGAATTTTGTTGAG+TGG | + | tig0006328:26111-26130 | Msa1343210:three_prime_UTR | 30.0% |
| ! | TGAATTTTGTTGAGTGGTTT+TGG | + | tig0006328:26117-26136 | Msa1343210:three_prime_UTR | 30.0% |
| ! | ATTAGCTTCATTCATATACG+AGG | + | tig0006328:26213-26232 | Msa1343210:three_prime_UTR | 30.0% |
| AAATCTACATCGACAACAAC+TGG | + | tig0006328:25016-25035 | Msa1343210:CDS | 35.0% | |
| TTAAACGGCTTAGGATTTGT+GGG | - | tig0006328:25073-25092 | None:intergenic | 35.0% | |
| GTTCAGAACTGATGTAAGTA+AGG | + | tig0006328:25093-25112 | Msa1343210:intron | 35.0% | |
| ATATTGTAATGCTGCAGGAA+AGG | + | tig0006328:25183-25202 | Msa1343210:intron | 35.0% | |
| TATTGTAATGCTGCAGGAAA+GGG | + | tig0006328:25184-25203 | Msa1343210:intron | 35.0% | |
| AATTCTCAAAGAAGCAAAGC+TGG | + | tig0006328:25208-25227 | Msa1343210:CDS | 35.0% | |
| AAAACACCTAACAGAAATCC+TGG | + | tig0006328:25651-25670 | Msa1343210:CDS | 35.0% | |
| TTAGAACCAGGATTTCTGTT+AGG | - | tig0006328:25660-25679 | None:intergenic | 35.0% | |
| !! | TGTTTCTGAAGTTTAGAACC+AGG | - | tig0006328:25672-25691 | None:intergenic | 35.0% |
| ACTTCAGAAACATGTTGATC+TGG | + | tig0006328:25680-25699 | Msa1343210:CDS | 35.0% | |
| GTAATGTTGTAATGCCTCTA+AGG | + | tig0006328:25739-25758 | Msa1343210:CDS | 35.0% | |
| TTCAGACACTGTAAAACCAA+AGG | + | tig0006328:25925-25944 | Msa1343210:CDS | 35.0% | |
| !! | CAAGATGCATCATTTTTACG+TGG | - | tig0006328:25962-25981 | None:intergenic | 35.0% |
| !! | TCATATCTAAGTTGGTTTCC+TGG | - | tig0006328:26062-26081 | None:intergenic | 35.0% |
| GATATGAATGTAGTAGAGCT+TGG | + | tig0006328:26075-26094 | Msa1343210:exon | 35.0% | |
| AGTTGTTGTCGATGTAGATT+TGG | - | tig0006328:25017-25036 | None:intergenic | 35.0% | |
| AAATCTACATCGACAACAAC+TGG | + | tig0006328:25016-25035 | Msa1343210:CDS | 35.0% | |
| TTAAACGGCTTAGGATTTGT+GGG | - | tig0006328:25073-25092 | None:intergenic | 35.0% | |
| GTTCAGAACTGATGTAAGTA+AGG | + | tig0006328:25093-25112 | Msa1343210:intron | 35.0% | |
| ATATTGTAATGCTGCAGGAA+AGG | + | tig0006328:25183-25202 | Msa1343210:intron | 35.0% | |
| TATTGTAATGCTGCAGGAAA+GGG | + | tig0006328:25184-25203 | Msa1343210:intron | 35.0% | |
| AATTCTCAAAGAAGCAAAGC+TGG | + | tig0006328:25208-25227 | Msa1343210:CDS | 35.0% | |
| AAAACACCTAACAGAAATCC+TGG | + | tig0006328:25651-25670 | Msa1343210:CDS | 35.0% | |
| TTAGAACCAGGATTTCTGTT+AGG | - | tig0006328:25660-25679 | None:intergenic | 35.0% | |
| !! | TGTTTCTGAAGTTTAGAACC+AGG | - | tig0006328:25672-25691 | None:intergenic | 35.0% |
| ACTTCAGAAACATGTTGATC+TGG | + | tig0006328:25680-25699 | Msa1343210:CDS | 35.0% | |
| GTAATGTTGTAATGCCTCTA+AGG | + | tig0006328:25739-25758 | Msa1343210:CDS | 35.0% | |
| TTCAGACACTGTAAAACCAA+AGG | + | tig0006328:25925-25944 | Msa1343210:CDS | 35.0% | |
| !! | CAAGATGCATCATTTTTACG+TGG | - | tig0006328:25962-25981 | None:intergenic | 35.0% |
| !! | TCATATCTAAGTTGGTTTCC+TGG | - | tig0006328:26062-26081 | None:intergenic | 35.0% |
| GATATGAATGTAGTAGAGCT+TGG | + | tig0006328:26075-26094 | Msa1343210:exon | 35.0% | |
| CTTAAACGGCTTAGGATTTG+TGG | - | tig0006328:25074-25093 | None:intergenic | 40.0% | |
| ! | GTTCTGAACTTAAACGGCTT+AGG | - | tig0006328:25082-25101 | None:intergenic | 40.0% |
| ATTGTAATGCTGCAGGAAAG+GGG | + | tig0006328:25185-25204 | Msa1343210:intron | 40.0% | |
| !! | TGTTGTAATGCCTCTAAGGT+TGG | + | tig0006328:25743-25762 | Msa1343210:intron | 40.0% |
| CTTGCAACAGCTTGTAAACT+AGG | + | tig0006328:25884-25903 | Msa1343210:CDS | 40.0% | |
| AATGATGCATCTTGTTCGCA+AGG | + | tig0006328:25968-25987 | Msa1343210:CDS | 40.0% | |
| !! | TATCTAAGTTGGTTTCCTGG+TGG | - | tig0006328:26059-26078 | None:intergenic | 40.0% |
| CTTAAACGGCTTAGGATTTG+TGG | - | tig0006328:25074-25093 | None:intergenic | 40.0% | |
| ! | GTTCTGAACTTAAACGGCTT+AGG | - | tig0006328:25082-25101 | None:intergenic | 40.0% |
| ATTGTAATGCTGCAGGAAAG+GGG | + | tig0006328:25185-25204 | Msa1343210:intron | 40.0% | |
| !! | TGTTGTAATGCCTCTAAGGT+TGG | + | tig0006328:25743-25762 | Msa1343210:intron | 40.0% |
| CTTGCAACAGCTTGTAAACT+AGG | + | tig0006328:25884-25903 | Msa1343210:CDS | 40.0% | |
| AATGATGCATCTTGTTCGCA+AGG | + | tig0006328:25968-25987 | Msa1343210:CDS | 40.0% | |
| !! | TATCTAAGTTGGTTTCCTGG+TGG | - | tig0006328:26059-26078 | None:intergenic | 40.0% |
| GTAAGGGCTTCTGTTCTCAT+TGG | + | tig0006328:25110-25129 | Msa1343210:intron | 45.0% | |
| TCAGGTGCTTAGCAATAAGC+AGG | - | tig0006328:25510-25529 | None:intergenic | 45.0% | |
| !! | CGTGGCTTTGTTGTTTCCTT+TGG | - | tig0006328:25944-25963 | None:intergenic | 45.0% |
| ATGCATCTTGTTCGCAAGGA+AGG | + | tig0006328:25972-25991 | Msa1343210:CDS | 45.0% | |
| GAGAACTTTGACTGTCCCAA+AGG | + | tig0006328:25994-26013 | Msa1343210:CDS | 45.0% | |
| GTAAGGGCTTCTGTTCTCAT+TGG | + | tig0006328:25110-25129 | Msa1343210:intron | 45.0% | |
| TCAGGTGCTTAGCAATAAGC+AGG | - | tig0006328:25510-25529 | None:intergenic | 45.0% | |
| !! | CGTGGCTTTGTTGTTTCCTT+TGG | - | tig0006328:25944-25963 | None:intergenic | 45.0% |
| ATGCATCTTGTTCGCAAGGA+AGG | + | tig0006328:25972-25991 | Msa1343210:CDS | 45.0% | |
| GAGAACTTTGACTGTCCCAA+AGG | + | tig0006328:25994-26013 | Msa1343210:CDS | 45.0% | |
| TGGTGCAGCTCTTAGGCACA+TGG | - | tig0006328:26039-26058 | None:intergenic | 55.0% | |
| ! | TTCCTGGTGGTGCAGCTCTT+AGG | - | tig0006328:26046-26065 | None:intergenic | 55.0% |
| TGGTGCAGCTCTTAGGCACA+TGG | - | tig0006328:26039-26058 | None:intergenic | 55.0% | |
| ! | TTCCTGGTGGTGCAGCTCTT+AGG | - | tig0006328:26046-26065 | None:intergenic | 55.0% |
| TGCCTAAGAGCTGCACCACC+AGG | + | tig0006328:26041-26060 | Msa1343210:CDS | 60.0% | |
| TGCCTAAGAGCTGCACCACC+AGG | + | tig0006328:26041-26060 | Msa1343210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006328 | gene | 25016 | 26301 | 25016 | ID=Msa1343210;Name=Msa1343210 |
| tig0006328 | mRNA | 25016 | 26301 | 25016 | ID=Msa1343210-mRNA-1;Parent=Msa1343210;Name=Msa1343210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.5|0.4|0.6|1|0.8|5|226|223 |
| tig0006328 | exon | 25016 | 25105 | 25016 | ID=Msa1343210-mRNA-1:exon:4024;Parent=Msa1343210-mRNA-1 |
| tig0006328 | exon | 25200 | 25301 | 25200 | ID=Msa1343210-mRNA-1:exon:4025;Parent=Msa1343210-mRNA-1 |
| tig0006328 | exon | 25396 | 25485 | 25396 | ID=Msa1343210-mRNA-1:exon:4026;Parent=Msa1343210-mRNA-1 |
| tig0006328 | exon | 25594 | 25760 | 25594 | ID=Msa1343210-mRNA-1:exon:4027;Parent=Msa1343210-mRNA-1 |
| tig0006328 | exon | 25853 | 26301 | 25853 | ID=Msa1343210-mRNA-1:exon:4028;Parent=Msa1343210-mRNA-1 |
| tig0006328 | CDS | 25016 | 25105 | 25016 | ID=Msa1343210-mRNA-1:cds;Parent=Msa1343210-mRNA-1 |
| tig0006328 | CDS | 25200 | 25301 | 25200 | ID=Msa1343210-mRNA-1:cds;Parent=Msa1343210-mRNA-1 |
| tig0006328 | CDS | 25396 | 25485 | 25396 | ID=Msa1343210-mRNA-1:cds;Parent=Msa1343210-mRNA-1 |
| tig0006328 | CDS | 25594 | 25760 | 25594 | ID=Msa1343210-mRNA-1:cds;Parent=Msa1343210-mRNA-1 |
| tig0006328 | CDS | 25853 | 26075 | 25853 | ID=Msa1343210-mRNA-1:cds;Parent=Msa1343210-mRNA-1 |
| tig0006328 | three_prime_UTR | 26076 | 26301 | 26076 | ID=Msa1343210-mRNA-1:three_prime_utr;Parent=Msa1343210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
