AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661150 MtrunA17_Chr1g0150131 94.652 187 7 1 1 187 1 184 1.29e-108 308
Msa0661150 MtrunA17_Chr3g0136871 64.474 152 47 3 25 176 24 168 5.68e-64 195
Msa0661150 MtrunA17_Chr7g0256441 56.757 148 40 4 25 172 24 147 9.40e-50 157
Msa0661150 MtrunA17_Chr8g0360371 46.281 121 62 2 12 132 8 125 1.20e-35 126
Msa0661150 MtrunA17_Chr4g0041811 49.541 109 54 1 24 132 28 135 2.88e-34 120
Msa0661150 MtrunA17_Chr2g0317231 43.836 146 78 3 10 155 8 149 2.10e-33 125
Msa0661150 MtrunA17_Chr6g0458331 48.182 110 54 2 21 129 29 136 1.15e-31 112
Msa0661150 MtrunA17_Chr2g0324721 38.286 175 88 4 30 187 29 200 1.52e-29 108
Msa0661150 MtrunA17_Chr4g0040291 44.615 130 68 3 25 153 22 148 1.97e-29 107
Msa0661150 MtrunA17_Chr2g0324711 41.818 165 77 7 11 163 11 168 2.17e-29 111
Msa0661150 MtrunA17_Chr2g0331181 39.726 146 75 6 19 162 18 152 3.12e-28 104
Msa0661150 MtrunA17_Chr4g0062341 41.176 119 61 4 16 132 24 135 6.54e-27 100
Msa0661150 MtrunA17_Chr4g0062311 41.176 119 61 4 16 132 24 135 6.54e-27 100
Msa0661150 MtrunA17_Chr4g0039721 36.913 149 81 5 1 143 1 142 1.01e-26 100
Msa0661150 MtrunA17_Chr2g0319611 41.818 110 61 3 25 132 23 131 5.30e-26 100
Msa0661150 MtrunA17_Chr4g0073901 38.095 126 76 1 5 128 4 129 1.30e-24 94.7
Msa0661150 MtrunA17_Chr8g0385021 36.686 169 91 4 12 167 7 172 3.11e-24 95.9
Msa0661150 MtrunA17_Chr2g0323021 37.342 158 89 5 12 168 8 156 5.04e-23 91.7
Msa0661150 MtrunA17_Chr4g0073921 38.281 128 73 3 7 129 4 130 6.45e-23 92.4
Msa0661150 MtrunA17_Chr8g0385031 42.373 118 63 3 11 128 10 122 7.85e-23 92.8
Msa0661150 MtrunA17_Chr1g0188981 39.796 98 58 1 32 128 32 129 2.67e-22 89.0
Msa0661150 MtrunA17_Chr5g0394321 26.705 176 121 3 12 187 11 178 6.77e-22 87.8
Msa0661150 MtrunA17_Chr8g0385041 40.625 128 63 5 30 148 27 150 2.05e-21 89.0
Msa0661150 MtrunA17_Chr4g0064041 32.738 168 92 2 32 178 194 361 3.44e-20 86.7
Msa0661150 MtrunA17_Chr4g0064041 31.852 135 89 2 12 146 13 144 1.09e-17 79.3
Msa0661150 MtrunA17_Chr1g0205701 35.833 120 75 1 49 166 43 162 1.32e-18 79.3
Msa0661150 MtrunA17_Chr3g0127521 32.955 176 83 5 12 163 8 172 8.08e-18 79.0
Msa0661150 MtrunA17_Chr6g0481491 33.333 114 69 3 17 130 18 124 1.52e-16 74.3
Msa0661150 MtrunA17_Chr2g0306461 37.500 120 64 4 17 128 9 125 1.55e-16 73.9
Msa0661150 MtrunA17_Chr4g0064031 34.375 96 61 2 25 118 25 120 2.36e-16 72.8
Msa0661150 MtrunA17_Chr8g0335531 36.719 128 72 4 5 130 2 122 3.80e-16 72.8
Msa0661150 MtrunA17_Chr1g0196801 31.613 155 93 6 32 184 26 169 5.15e-16 72.0
Msa0661150 MtrunA17_Chr8g0387804 32.500 120 76 2 13 128 9 127 8.27e-16 70.5
Msa0661150 MtrunA17_Chr8g0335571 35.938 128 73 4 5 130 2 122 2.14e-15 70.9
Msa0661150 MtrunA17_Chr8g0379081 38.525 122 62 4 75 186 1 119 1.06e-14 67.4
Msa0661150 MtrunA17_Chr4g0033131 27.869 122 77 3 17 128 9 129 1.97e-14 67.8
Msa0661150 MtrunA17_Chr4g0033531 27.869 122 77 3 17 128 9 129 1.97e-14 67.8
Msa0661150 MtrunA17_Chr7g0253641 33.333 126 75 3 13 134 7 127 6.17e-14 67.8
Msa0661150 MtrunA17_Chr2g0289741 34.426 122 65 3 44 164 39 146 6.20e-14 66.6
Msa0661150 MtrunA17_Chr6g0483981 33.571 140 82 5 37 172 35 167 1.03e-13 68.6
Msa0661150 MtrunA17_Chr6g0459441 36.735 98 56 4 32 128 29 121 4.49e-13 64.3
Msa0661150 MtrunA17_Chr8g0380901 32.759 116 74 2 11 126 7 118 9.78e-13 62.0
Msa0661150 MtrunA17_Chr3g0132441 40.741 81 47 1 48 128 41 120 1.11e-12 63.5
Msa0661150 MtrunA17_Chr7g0253631 33.058 121 72 3 12 128 6 121 1.38e-12 63.9
Msa0661150 MtrunA17_Chr3g0132411 39.506 81 48 1 48 128 80 159 1.84e-12 62.4
Msa0661150 MtrunA17_Chr7g0253761 30.952 126 78 3 13 134 7 127 2.29e-12 62.4
Msa0661150 MtrunA17_Chr6g0453921 31.343 134 77 5 7 131 10 137 2.36e-12 62.4
Msa0661150 MtrunA17_Chr3g0132431 39.506 81 48 1 48 128 41 120 2.79e-12 62.4
Msa0661150 MtrunA17_Chr1g0211101 22.995 187 121 5 1 182 1 169 2.84e-12 62.4
Msa0661150 MtrunA17_Chr3g0132701 37.634 93 53 2 37 128 34 122 1.93e-11 60.5
Msa0661150 MtrunA17_Chr3g0132511 37.634 93 53 2 37 128 34 122 6.03e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661150 AT4G31840.1 50.000 176 77 3 12 187 11 175 2.87e-57 178
Msa0661150 AT2G25060.1 50.286 175 75 5 11 184 15 178 6.73e-55 172
Msa0661150 AT5G25090.1 53.279 122 57 0 11 132 9 130 4.02e-47 152
Msa0661150 AT4G30590.1 53.600 125 54 1 12 132 8 132 2.04e-45 148
Msa0661150 AT5G57920.3 44.079 152 82 3 26 177 53 201 1.10e-43 145
Msa0661150 AT5G57920.1 44.079 152 82 3 26 177 21 169 1.14e-43 144
Msa0661150 AT5G57920.2 44.079 152 82 3 26 177 20 168 1.24e-43 144
Msa0661150 AT2G23990.1 51.773 141 55 3 14 150 10 141 6.54e-42 140
Msa0661150 AT2G23990.2 45.625 160 55 4 14 150 10 160 3.25e-37 129
Msa0661150 AT3G20570.1 41.104 163 82 5 12 164 15 173 2.08e-35 123
Msa0661150 AT5G14345.1 57.143 91 37 1 40 130 28 116 2.71e-31 111
Msa0661150 AT5G53870.2 40.252 159 84 5 10 161 9 163 1.87e-29 111
Msa0661150 AT5G53870.1 40.252 159 84 5 10 161 9 163 2.46e-29 111
Msa0661150 AT4G28365.1 39.506 162 89 6 13 168 11 169 1.14e-28 106
Msa0661150 AT3G18590.1 45.833 120 59 4 12 129 12 127 1.66e-28 105
Msa0661150 AT4G27520.1 44.628 121 63 3 12 132 16 132 3.04e-28 108
Msa0661150 AT4G32490.1 34.857 175 85 5 13 166 11 177 2.95e-25 97.8
Msa0661150 AT1G48940.1 38.889 126 69 3 13 132 6 129 2.99e-25 96.7
Msa0661150 AT1G79800.1 34.459 148 85 4 8 147 8 151 6.20e-22 88.6
Msa0661150 AT2G31050.1 36.296 135 80 3 11 145 12 140 1.67e-21 87.4
Msa0661150 AT1G64640.1 35.897 117 74 1 32 148 36 151 2.01e-21 87.0
Msa0661150 AT2G26720.1 33.094 139 85 3 11 149 12 142 9.92e-20 82.8
Msa0661150 AT2G32300.1 35.714 140 74 5 25 160 23 150 5.51e-19 82.0
Msa0661150 AT2G32300.2 35.714 140 74 5 25 160 53 180 1.77e-18 81.3
Msa0661150 AT5G20230.1 34.426 122 76 3 26 145 23 142 5.45e-17 75.5
Msa0661150 AT5G26330.1 37.500 80 50 0 50 129 43 122 2.74e-16 73.6
Msa0661150 AT5G07475.1 28.571 182 117 6 12 187 10 184 1.65e-15 71.6
Msa0661150 AT3G60270.1 36.364 99 58 2 32 130 29 122 2.47e-14 68.2
Msa0661150 AT1G72230.1 31.967 122 72 2 48 159 38 158 3.53e-13 65.1
Msa0661150 AT1G45063.2 31.933 119 75 3 12 129 14 127 2.12e-12 64.3
Msa0661150 AT1G45063.1 31.933 119 75 3 12 129 14 127 2.95e-12 64.3
Msa0661150 AT3G27200.1 29.839 124 76 3 11 129 5 122 3.03e-12 62.4

Find 55 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATCTTGTTCTCTTT+TGG 0.177913 4_3:+72376824 Msa0661150:CDS
GCAGAAATTATGGATGATTT+TGG 0.191043 4_3:-72376722 None:intergenic
TCTTAAAGATGCAGAAATTA+TGG 0.244416 4_3:-72376732 None:intergenic
CTGTGGTTGTCATGAGTCTA+AGG 0.276529 4_3:+72377554 Msa0661150:CDS
AAATTCCATTATATATGTTT+TGG 0.286437 4_3:+72377898 Msa0661150:three_prime_UTR
CCCATCATTGTAGTGTTTGA+TGG 0.297797 4_3:-72377446 None:intergenic
TGAATATCCAAACTAAAATA+AGG 0.318116 4_3:-72377754 None:intergenic
TTCATAATATTAGTATTATT+AGG 0.321476 4_3:+72377773 Msa0661150:three_prime_UTR
TCTCCACTGATGTAGTAGTA+TGG 0.331847 4_3:-72377499 None:intergenic
AAAGTGAGATTTGATCATTC+TGG 0.347650 4_3:+72377475 Msa0661150:CDS
CAAGACCAAAACATATATAA+TGG 0.357893 4_3:-72377903 None:intergenic
AGTATTATTAGGATTAAGAT+TGG 0.382883 4_3:+72377784 Msa0661150:three_prime_UTR
AATCTGATTCTCTCAACAAA+TGG 0.402045 4_3:+72376934 Msa0661150:CDS
GGAGCAACAGCTGAGCCAGC+TGG 0.404423 4_3:-72377637 None:intergenic
CTACTACATCAGTGGAGAAA+AGG 0.404851 4_3:+72377504 Msa0661150:CDS
CCCATCAAACACTACAATGA+TGG 0.417208 4_3:+72377445 Msa0661150:CDS
CCATCATTGTAGTGTTTGAT+GGG 0.419117 4_3:-72377445 None:intergenic
TGCATGGAAGGTTCCTTCTT+CGG 0.420616 4_3:+72376911 Msa0661150:CDS
CCTTCACCAGCTGAAGTTGA+TGG 0.422615 4_3:+72377613 Msa0661150:CDS
GCAAGGTGGTGGTGTATTTG+TGG 0.435276 4_3:+72377687 Msa0661150:CDS
AAAAGTGAAAATTACTTAGA+TGG 0.435763 4_3:-72376986 None:intergenic
ATTAGGATTAAGATTGGGAT+TGG 0.437592 4_3:+72377790 Msa0661150:three_prime_UTR
ACAAATGGGCTTCAAGTGTT+CGG 0.440098 4_3:+72376949 Msa0661150:CDS
AAAACAGTTGCACCACTTGT+TGG 0.440200 4_3:-72377664 None:intergenic
GCAGCTAAGGATATCTTGCT+TGG 0.450579 4_3:+72376876 Msa0661150:CDS
TACTACATCAGTGGAGAAAA+GGG 0.477152 4_3:+72377505 Msa0661150:CDS
ATCTGATTCTCTCAACAAAT+GGG 0.481996 4_3:+72376935 Msa0661150:CDS
TGTGGTTGTCATGAGTCTAA+GGG 0.500303 4_3:+72377555 Msa0661150:CDS
GTTGCACCACTTGTTGGAGC+TGG 0.502974 4_3:-72377658 None:intergenic
GTATTATTAGGATTAAGATT+GGG 0.509185 4_3:+72377785 Msa0661150:three_prime_UTR
AGAGAATCAGATTCCGAAGA+AGG 0.516269 4_3:-72376924 None:intergenic
ACTTCAGCTGGTGAAGGTGC+TGG 0.517037 4_3:-72377607 None:intergenic
CCATCAAACACTACAATGAT+GGG 0.517725 4_3:+72377446 Msa0661150:CDS
GCTGAAGTTGATGGTCCAGC+TGG 0.527675 4_3:+72377622 Msa0661150:CDS
GCTGGACCATCAACTTCAGC+TGG 0.530028 4_3:-72377619 None:intergenic
TCAAGTGTTCGGTTTCAAGT+TGG 0.534785 4_3:+72376960 Msa0661150:CDS
TCAGTTTGGAAATATGAAGC+TGG 0.536642 4_3:+72377364 Msa0661150:intron
GAAAAGGGTCATTGTGAGAA+GGG 0.553149 4_3:+72377520 Msa0661150:CDS
GTGGTTGTCATGAGTCTAAG+GGG 0.573266 4_3:+72377556 Msa0661150:CDS
CCATCAACTTCAGCTGGTGA+AGG 0.581807 4_3:-72377613 None:intergenic
GGTGGTGTATTTGTGGCTGT+AGG 0.582095 4_3:+72377694 Msa0661150:CDS
ATATTAAAATTTGAATGACA+AGG 0.592685 4_3:-72377875 None:intergenic
AGAAAAGGGTCATTGTGAGA+AGG 0.594361 4_3:+72377519 Msa0661150:CDS
GTTGCTCCAGCTCCAACAAG+TGG 0.607631 4_3:+72377652 Msa0661150:CDS
AATATAATAATAATATCAGA+AGG 0.608251 4_3:-72377947 None:intergenic
GCTAAGGATATCTTGCTTGG+TGG 0.617121 4_3:+72376879 Msa0661150:CDS
GGTCCATACTACTACATCAG+TGG 0.620422 4_3:+72377496 Msa0661150:CDS
TGGCAAAACTGATGCATGGA+AGG 0.623442 4_3:+72376899 Msa0661150:CDS
TGGTTGTCATGAGTCTAAGG+GGG 0.630347 4_3:+72377557 Msa0661150:CDS
TAGGAGTGTTTGTTGCCATG+TGG 0.640277 4_3:+72377713 Msa0661150:CDS
TTGGTGGCAAAACTGATGCA+TGG 0.676457 4_3:+72376895 Msa0661150:CDS
TTCAAATCAGAAAAGCCACA+TGG 0.691376 4_3:-72377728 None:intergenic
GGTTGTCATGAGTCTAAGGG+GGG 0.691450 4_3:+72377558 Msa0661150:CDS
GTTGTCATGAGTCTAAGGGG+GGG 0.700416 4_3:+72377559 Msa0661150:CDS
GAAGGGTCAGAAGCTTACTG+TGG 0.745278 4_3:+72377537 Msa0661150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATATTAGTATTATT+AGG + chr4_3:72377773-72377792 Msa0661150:three_prime_UTR 10.0%
!! AATATAATAATAATATCAGA+AGG - chr4_3:72377950-72377969 None:intergenic 10.0%
!! TTCATAATATTAGTATTATT+AGG + chr4_3:72377773-72377792 Msa0661150:three_prime_UTR 10.0%
!! AATATAATAATAATATCAGA+AGG - chr4_3:72377950-72377969 None:intergenic 10.0%
!!! TGAATTTTTAGTGATAAAAA+AGG - chr4_3:72377025-72377044 None:intergenic 15.0%
!!! TGAATTTTTACTGATAATTA+AGG - chr4_3:72377067-72377086 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG - chr4_3:72377131-72377150 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG - chr4_3:72377218-72377237 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG - chr4_3:72377298-72377317 None:intergenic 15.0%
!! ATATTAAAATTTGAATGACA+AGG - chr4_3:72377878-72377897 None:intergenic 15.0%
!!! AAATTCCATTATATATGTTT+TGG + chr4_3:72377898-72377917 Msa0661150:three_prime_UTR 15.0%
!!! TGAATTTTTAGTGATAAAAA+AGG - chr4_3:72377025-72377044 None:intergenic 15.0%
!!! TGAATTTTTACTGATAATTA+AGG - chr4_3:72377067-72377086 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG - chr4_3:72377131-72377150 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG - chr4_3:72377218-72377237 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG - chr4_3:72377298-72377317 None:intergenic 15.0%
!! ATATTAAAATTTGAATGACA+AGG - chr4_3:72377878-72377897 None:intergenic 15.0%
!!! AAATTCCATTATATATGTTT+TGG + chr4_3:72377898-72377917 Msa0661150:three_prime_UTR 15.0%
!! AAAAGTGAAAATTACTTAGA+TGG - chr4_3:72376989-72377008 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG + chr4_3:72377181-72377200 Msa0661150:intron 20.0%
!! GGTGGAAATATAAAAAAATT+GGG - chr4_3:72377224-72377243 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG - chr4_3:72377225-72377244 None:intergenic 20.0%
!! TGAATATCCAAACTAAAATA+AGG - chr4_3:72377757-72377776 None:intergenic 20.0%
!! AGTATTATTAGGATTAAGAT+TGG + chr4_3:72377784-72377803 Msa0661150:three_prime_UTR 20.0%
!! GTATTATTAGGATTAAGATT+GGG + chr4_3:72377785-72377804 Msa0661150:three_prime_UTR 20.0%
!!! ATTATATATGTTTTGGTCTT+GGG + chr4_3:72377905-72377924 Msa0661150:three_prime_UTR 20.0%
!! AAAAGTGAAAATTACTTAGA+TGG - chr4_3:72376989-72377008 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG + chr4_3:72377181-72377200 Msa0661150:intron 20.0%
!! GGTGGAAATATAAAAAAATT+GGG - chr4_3:72377224-72377243 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG - chr4_3:72377225-72377244 None:intergenic 20.0%
!! TGAATATCCAAACTAAAATA+AGG - chr4_3:72377757-72377776 None:intergenic 20.0%
!! AGTATTATTAGGATTAAGAT+TGG + chr4_3:72377784-72377803 Msa0661150:three_prime_UTR 20.0%
!! GTATTATTAGGATTAAGATT+GGG + chr4_3:72377785-72377804 Msa0661150:three_prime_UTR 20.0%
!!! ATTATATATGTTTTGGTCTT+GGG + chr4_3:72377905-72377924 Msa0661150:three_prime_UTR 20.0%
! TCTTAAAGATGCAGAAATTA+TGG - chr4_3:72376735-72376754 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG + chr4_3:72377228-72377247 Msa0661150:intron 25.0%
! TTGAAAACAAAATACCAAGA+TGG - chr4_3:72377245-72377264 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG - chr4_3:72377334-72377353 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG + chr4_3:72377350-72377369 Msa0661150:intron 25.0%
!!! TGAATTGCCTTATTTTAGTT+TGG + chr4_3:72377747-72377766 Msa0661150:three_prime_UTR 25.0%
! CAAGACCAAAACATATATAA+TGG - chr4_3:72377906-72377925 None:intergenic 25.0%
!!! CATTATATATGTTTTGGTCT+TGG + chr4_3:72377904-72377923 Msa0661150:three_prime_UTR 25.0%
! TCTTAAAGATGCAGAAATTA+TGG - chr4_3:72376735-72376754 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG + chr4_3:72377228-72377247 Msa0661150:intron 25.0%
! TTGAAAACAAAATACCAAGA+TGG - chr4_3:72377245-72377264 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG - chr4_3:72377334-72377353 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG + chr4_3:72377350-72377369 Msa0661150:intron 25.0%
!!! TGAATTGCCTTATTTTAGTT+TGG + chr4_3:72377747-72377766 Msa0661150:three_prime_UTR 25.0%
! CAAGACCAAAACATATATAA+TGG - chr4_3:72377906-72377925 None:intergenic 25.0%
!!! CATTATATATGTTTTGGTCT+TGG + chr4_3:72377904-72377923 Msa0661150:three_prime_UTR 25.0%
! GCAGAAATTATGGATGATTT+TGG - chr4_3:72376725-72376744 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG + chr4_3:72376788-72376807 Msa0661150:exon 30.0%
! TTCATCATCTTGTTCTCTTT+TGG + chr4_3:72376824-72376843 Msa0661150:CDS 30.0%
!! TTGGTTCTTTTTGTTCTCTT+TGG + chr4_3:72376843-72376862 Msa0661150:CDS 30.0%
AATCTGATTCTCTCAACAAA+TGG + chr4_3:72376934-72376953 Msa0661150:CDS 30.0%
ATCTGATTCTCTCAACAAAT+GGG + chr4_3:72376935-72376954 Msa0661150:CDS 30.0%
AAAACAAAATACCAAGATGG+TGG - chr4_3:72377242-72377261 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG + chr4_3:72377475-72377494 Msa0661150:CDS 30.0%
ATTAGGATTAAGATTGGGAT+TGG + chr4_3:72377790-72377809 Msa0661150:three_prime_UTR 30.0%
! GCAGAAATTATGGATGATTT+TGG - chr4_3:72376725-72376744 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG + chr4_3:72376788-72376807 Msa0661150:exon 30.0%
! TTCATCATCTTGTTCTCTTT+TGG + chr4_3:72376824-72376843 Msa0661150:CDS 30.0%
!! TTGGTTCTTTTTGTTCTCTT+TGG + chr4_3:72376843-72376862 Msa0661150:CDS 30.0%
AATCTGATTCTCTCAACAAA+TGG + chr4_3:72376934-72376953 Msa0661150:CDS 30.0%
ATCTGATTCTCTCAACAAAT+GGG + chr4_3:72376935-72376954 Msa0661150:CDS 30.0%
AAAACAAAATACCAAGATGG+TGG - chr4_3:72377242-72377261 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG + chr4_3:72377475-72377494 Msa0661150:CDS 30.0%
ATTAGGATTAAGATTGGGAT+TGG + chr4_3:72377790-72377809 Msa0661150:three_prime_UTR 30.0%
ATTTGCAGAAAAACAATGGC+TGG + chr4_3:72376792-72376811 Msa0661150:exon 35.0%
TCAGTTTGGAAATATGAAGC+TGG + chr4_3:72377364-72377383 Msa0661150:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG + chr4_3:72377393-72377412 Msa0661150:CDS 35.0%
CCATCATTGTAGTGTTTGAT+GGG - chr4_3:72377448-72377467 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG + chr4_3:72377446-72377465 Msa0661150:CDS 35.0%
TACTACATCAGTGGAGAAAA+GGG + chr4_3:72377505-72377524 Msa0661150:CDS 35.0%
TTCAAATCAGAAAAGCCACA+TGG - chr4_3:72377731-72377750 None:intergenic 35.0%
ATTTGCAGAAAAACAATGGC+TGG + chr4_3:72376792-72376811 Msa0661150:exon 35.0%
TCAGTTTGGAAATATGAAGC+TGG + chr4_3:72377364-72377383 Msa0661150:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG + chr4_3:72377393-72377412 Msa0661150:CDS 35.0%
CCATCATTGTAGTGTTTGAT+GGG - chr4_3:72377448-72377467 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG + chr4_3:72377446-72377465 Msa0661150:CDS 35.0%
TACTACATCAGTGGAGAAAA+GGG + chr4_3:72377505-72377524 Msa0661150:CDS 35.0%
TTCAAATCAGAAAAGCCACA+TGG - chr4_3:72377731-72377750 None:intergenic 35.0%
AGAGAATCAGATTCCGAAGA+AGG - chr4_3:72376927-72376946 None:intergenic 40.0%
! ACAAATGGGCTTCAAGTGTT+CGG + chr4_3:72376949-72376968 Msa0661150:CDS 40.0%
! TCAAGTGTTCGGTTTCAAGT+TGG + chr4_3:72376960-72376979 Msa0661150:CDS 40.0%
!!! GTAGTGTTTGATGGGTTTTG+AGG - chr4_3:72377440-72377459 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG + chr4_3:72377445-72377464 Msa0661150:CDS 40.0%
CCCATCATTGTAGTGTTTGA+TGG - chr4_3:72377449-72377468 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG - chr4_3:72377502-72377521 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG + chr4_3:72377504-72377523 Msa0661150:CDS 40.0%
AGAAAAGGGTCATTGTGAGA+AGG + chr4_3:72377519-72377538 Msa0661150:CDS 40.0%
GAAAAGGGTCATTGTGAGAA+GGG + chr4_3:72377520-72377539 Msa0661150:CDS 40.0%
TGTGGTTGTCATGAGTCTAA+GGG + chr4_3:72377555-72377574 Msa0661150:CDS 40.0%
GCTGGTGAAAAAGCAACAAT+GGG - chr4_3:72377592-72377611 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG - chr4_3:72377593-72377612 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG - chr4_3:72377667-72377686 None:intergenic 40.0%
AGAGAATCAGATTCCGAAGA+AGG - chr4_3:72376927-72376946 None:intergenic 40.0%
! ACAAATGGGCTTCAAGTGTT+CGG + chr4_3:72376949-72376968 Msa0661150:CDS 40.0%
! TCAAGTGTTCGGTTTCAAGT+TGG + chr4_3:72376960-72376979 Msa0661150:CDS 40.0%
!!! GTAGTGTTTGATGGGTTTTG+AGG - chr4_3:72377440-72377459 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG + chr4_3:72377445-72377464 Msa0661150:CDS 40.0%
CCCATCATTGTAGTGTTTGA+TGG - chr4_3:72377449-72377468 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG - chr4_3:72377502-72377521 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG + chr4_3:72377504-72377523 Msa0661150:CDS 40.0%
AGAAAAGGGTCATTGTGAGA+AGG + chr4_3:72377519-72377538 Msa0661150:CDS 40.0%
GAAAAGGGTCATTGTGAGAA+GGG + chr4_3:72377520-72377539 Msa0661150:CDS 40.0%
TGTGGTTGTCATGAGTCTAA+GGG + chr4_3:72377555-72377574 Msa0661150:CDS 40.0%
GCTGGTGAAAAAGCAACAAT+GGG - chr4_3:72377592-72377611 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG - chr4_3:72377593-72377612 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG - chr4_3:72377667-72377686 None:intergenic 40.0%
! TGGTTGTGCTTTTGCAGCTA+AGG + chr4_3:72376863-72376882 Msa0661150:CDS 45.0%
GCAGCTAAGGATATCTTGCT+TGG + chr4_3:72376876-72376895 Msa0661150:CDS 45.0%
GCTAAGGATATCTTGCTTGG+TGG + chr4_3:72376879-72376898 Msa0661150:CDS 45.0%
! TTGGTGGCAAAACTGATGCA+TGG + chr4_3:72376895-72376914 Msa0661150:CDS 45.0%
TGGCAAAACTGATGCATGGA+AGG + chr4_3:72376899-72376918 Msa0661150:CDS 45.0%
TGCATGGAAGGTTCCTTCTT+CGG + chr4_3:72376911-72376930 Msa0661150:CDS 45.0%
GGTCCATACTACTACATCAG+TGG + chr4_3:72377496-72377515 Msa0661150:CDS 45.0%
CTGTGGTTGTCATGAGTCTA+AGG + chr4_3:72377554-72377573 Msa0661150:CDS 45.0%
GTGGTTGTCATGAGTCTAAG+GGG + chr4_3:72377556-72377575 Msa0661150:CDS 45.0%
TGGTTGTCATGAGTCTAAGG+GGG + chr4_3:72377557-72377576 Msa0661150:CDS 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG + chr4_3:72377670-72377689 Msa0661150:CDS 45.0%
!! TAGGAGTGTTTGTTGCCATG+TGG + chr4_3:72377713-72377732 Msa0661150:CDS 45.0%
! TGGTTGTGCTTTTGCAGCTA+AGG + chr4_3:72376863-72376882 Msa0661150:CDS 45.0%
GCAGCTAAGGATATCTTGCT+TGG + chr4_3:72376876-72376895 Msa0661150:CDS 45.0%
GCTAAGGATATCTTGCTTGG+TGG + chr4_3:72376879-72376898 Msa0661150:CDS 45.0%
! TTGGTGGCAAAACTGATGCA+TGG + chr4_3:72376895-72376914 Msa0661150:CDS 45.0%
TGGCAAAACTGATGCATGGA+AGG + chr4_3:72376899-72376918 Msa0661150:CDS 45.0%
TGCATGGAAGGTTCCTTCTT+CGG + chr4_3:72376911-72376930 Msa0661150:CDS 45.0%
GGTCCATACTACTACATCAG+TGG + chr4_3:72377496-72377515 Msa0661150:CDS 45.0%
CTGTGGTTGTCATGAGTCTA+AGG + chr4_3:72377554-72377573 Msa0661150:CDS 45.0%
GTGGTTGTCATGAGTCTAAG+GGG + chr4_3:72377556-72377575 Msa0661150:CDS 45.0%
TGGTTGTCATGAGTCTAAGG+GGG + chr4_3:72377557-72377576 Msa0661150:CDS 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG + chr4_3:72377670-72377689 Msa0661150:CDS 45.0%
!! TAGGAGTGTTTGTTGCCATG+TGG + chr4_3:72377713-72377732 Msa0661150:CDS 45.0%
GAAGGGTCAGAAGCTTACTG+TGG + chr4_3:72377537-72377556 Msa0661150:CDS 50.0%
GGTTGTCATGAGTCTAAGGG+GGG + chr4_3:72377558-72377577 Msa0661150:CDS 50.0%
GTTGTCATGAGTCTAAGGGG+GGG + chr4_3:72377559-72377578 Msa0661150:CDS 50.0%
CCATCAACTTCAGCTGGTGA+AGG - chr4_3:72377616-72377635 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG + chr4_3:72377613-72377632 Msa0661150:CDS 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG + chr4_3:72377673-72377692 Msa0661150:CDS 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG + chr4_3:72377676-72377695 Msa0661150:CDS 50.0%
! GCAAGGTGGTGGTGTATTTG+TGG + chr4_3:72377687-72377706 Msa0661150:CDS 50.0%
GGTGGTGTATTTGTGGCTGT+AGG + chr4_3:72377694-72377713 Msa0661150:CDS 50.0%
GAAGGGTCAGAAGCTTACTG+TGG + chr4_3:72377537-72377556 Msa0661150:CDS 50.0%
GGTTGTCATGAGTCTAAGGG+GGG + chr4_3:72377558-72377577 Msa0661150:CDS 50.0%
GTTGTCATGAGTCTAAGGGG+GGG + chr4_3:72377559-72377578 Msa0661150:CDS 50.0%
CCATCAACTTCAGCTGGTGA+AGG - chr4_3:72377616-72377635 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG + chr4_3:72377613-72377632 Msa0661150:CDS 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG + chr4_3:72377673-72377692 Msa0661150:CDS 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG + chr4_3:72377676-72377695 Msa0661150:CDS 50.0%
! GCAAGGTGGTGGTGTATTTG+TGG + chr4_3:72377687-72377706 Msa0661150:CDS 50.0%
GGTGGTGTATTTGTGGCTGT+AGG + chr4_3:72377694-72377713 Msa0661150:CDS 50.0%
TGAGTCTAAGGGGGGGAAGT+AGG + chr4_3:72377566-72377585 Msa0661150:CDS 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG - chr4_3:72377610-72377629 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG - chr4_3:72377622-72377641 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG + chr4_3:72377622-72377641 Msa0661150:CDS 55.0%
GTTGCTCCAGCTCCAACAAG+TGG + chr4_3:72377652-72377671 Msa0661150:CDS 55.0%
! GTTGCACCACTTGTTGGAGC+TGG - chr4_3:72377661-72377680 None:intergenic 55.0%
TGAGTCTAAGGGGGGGAAGT+AGG + chr4_3:72377566-72377585 Msa0661150:CDS 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG - chr4_3:72377610-72377629 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG - chr4_3:72377622-72377641 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG + chr4_3:72377622-72377641 Msa0661150:CDS 55.0%
GTTGCTCCAGCTCCAACAAG+TGG + chr4_3:72377652-72377671 Msa0661150:CDS 55.0%
! GTTGCACCACTTGTTGGAGC+TGG - chr4_3:72377661-72377680 None:intergenic 55.0%
GGAGCAACAGCTGAGCCAGC+TGG - chr4_3:72377640-72377659 None:intergenic 65.0%
GGAGCAACAGCTGAGCCAGC+TGG - chr4_3:72377640-72377659 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 72376713 72377994 72376713 ID=Msa0661150;Name=Msa0661150
chr4_3 mRNA 72376713 72377994 72376713 ID=Msa0661150-mRNA-1;Parent=Msa0661150;Name=Msa0661150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=94|1|1|1|1|1|2|250|187
chr4_3 exon 72376713 72376993 72376713 ID=Msa0661150-mRNA-1:exon:21663;Parent=Msa0661150-mRNA-1
chr4_3 exon 72377368 72377994 72377368 ID=Msa0661150-mRNA-1:exon:21664;Parent=Msa0661150-mRNA-1
chr4_3 five_prime_UTR 72376713 72376806 72376713 ID=Msa0661150-mRNA-1:five_prime_utr;Parent=Msa0661150-mRNA-1
chr4_3 CDS 72376807 72376993 72376807 ID=Msa0661150-mRNA-1:cds;Parent=Msa0661150-mRNA-1
chr4_3 CDS 72377368 72377744 72377368 ID=Msa0661150-mRNA-1:cds;Parent=Msa0661150-mRNA-1
chr4_3 three_prime_UTR 72377745 72377994 72377745 ID=Msa0661150-mRNA-1:three_prime_utr;Parent=Msa0661150-mRNA-1
Gene Sequence

>Msa0661150

ATGGCTGGTTCGTCTTCTTCATCATCTTGTTCTCTTTTGGTTCTTTTTGTTCTCTTTGGTTGTGCTTTTGCAGCTAAGGATATCTTGCTTGGTGGCAAAACTGATGCATGGAAGGTTCCTTCTTCGGAATCTGATTCTCTCAACAAATGGGCTTCAAGTGTTCGGTTTCAAGTTGGAGACCATCTAATTTGGAAATATGAAGCTGGAAAAGATTCTGTTTTGCAAGTGAGTAAGGAAGATTATGATAGCTGCAACACCTCAAAACCCATCAAACACTACAATGATGGGAACACTAAAGTGAGATTTGATCATTCTGGTCCATACTACTACATCAGTGGAGAAAAGGGTCATTGTGAGAAGGGTCAGAAGCTTACTGTGGTTGTCATGAGTCTAAGGGGGGGAAGTAGGCCCATTGTTGCTTTTTCACCAGCACCTTCACCAGCTGAAGTTGATGGTCCAGCTGGCTCAGCTGTTGCTCCAGCTCCAACAAGTGGTGCAACTGTTTTGCAAGGTGGTGGTGTATTTGTGGCTGTAGGAGTGTTTGTTGCCATGTGGCTTTTCTGA

Protein sequence

>Msa0661150

MAGSSSSSSCSLLVLFVLFGCAFAAKDILLGGKTDAWKVPSSESDSLNKWASSVRFQVGDHLIWKYEAGKDSVLQVSKEDYDSCNTSKPIKHYNDGNTKVRFDHSGPYYYISGEKGHCEKGQKLTVVVMSLRGGSRPIVAFSPAPSPAEVDGPAGSAVAPAPTSGATVLQGGGVFVAVGVFVAMWLF*