Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346010 | XP_003603769.1 | 95.661 | 507 | 22 | 0 | 1 | 507 | 102 | 608 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346010 | sp|Q9SA91|PSI2_ARATH | 51.859 | 511 | 227 | 6 | 1 | 505 | 113 | 610 | 4.82e-170 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346010 | G7J592 | 95.661 | 507 | 22 | 0 | 1 | 507 | 102 | 608 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035790 | Msa1346010 | 0.821825 | 3.286633e-53 | -8.615850e-47 |
| Msa0046680 | Msa1346010 | 0.855208 | 7.361334e-62 | -8.615850e-47 |
| Msa0051480 | Msa1346010 | 0.801966 | 7.017720e-49 | -8.615850e-47 |
| Msa0053680 | Msa1346010 | -0.804784 | 1.829186e-49 | -8.615850e-47 |
| Msa1344870 | Msa1346010 | -0.819353 | 1.214480e-52 | -8.615850e-47 |
| Msa1346010 | Msa1377050 | 0.804253 | 2.360985e-49 | -8.615850e-47 |
| Msa1346010 | Msa1383790 | 0.974461 | 3.391717e-138 | -8.615850e-47 |
| Msa1346010 | Msa1387610 | 0.820791 | 5.691435e-53 | -8.615850e-47 |
| Msa1346010 | Msa1396160 | 0.822150 | 2.763604e-53 | -8.615850e-47 |
| Msa1346010 | Msa1449470 | 0.819268 | 1.269667e-52 | -8.615850e-47 |
| Msa1346010 | Msa1453600 | 0.839729 | 1.331156e-57 | -8.615850e-47 |
| Msa1346010 | Msa1459930 | 0.831427 | 1.679767e-55 | -8.615850e-47 |
| Msa0610850 | Msa1346010 | -0.800974 | 1.120225e-48 | -8.615850e-47 |
| Msa0648180 | Msa1346010 | -0.811405 | 7.118171e-51 | -8.615850e-47 |
| Msa0648270 | Msa1346010 | -0.804507 | 2.089789e-49 | -8.615850e-47 |
| Msa0693560 | Msa1346010 | -0.801954 | 7.055459e-49 | -8.615850e-47 |
| Msa0744550 | Msa1346010 | 0.805890 | 1.072717e-49 | -8.615850e-47 |
| Msa0744560 | Msa1346010 | 0.813982 | 1.942175e-51 | -8.615850e-47 |
| Msa0826360 | Msa1346010 | 0.834295 | 3.256275e-56 | -8.615850e-47 |
| Msa0826370 | Msa1346010 | 0.815703 | 8.068280e-52 | -8.615850e-47 |
| Msa0146200 | Msa1346010 | 0.808923 | 2.439925e-50 | -8.615850e-47 |
| Msa0187820 | Msa1346010 | -0.833262 | 5.900704e-56 | -8.615850e-47 |
| Msa1236740 | Msa1346010 | -0.834544 | 2.818414e-56 | -8.615850e-47 |
| Msa1263500 | Msa1346010 | 0.817908 | 2.583020e-52 | -8.615850e-47 |
| Msa1300930 | Msa1346010 | 0.806748 | 7.076518e-50 | -8.615850e-47 |
| Msa1309050 | Msa1346010 | 0.809333 | 1.992584e-50 | -8.615850e-47 |
| Msa1333700 | Msa1346010 | 0.802739 | 4.863319e-49 | -8.615850e-47 |
| Msa0385320 | Msa1346010 | 0.931148 | 5.792269e-94 | -8.615850e-47 |
| Msa0421080 | Msa1346010 | 0.809510 | 1.826320e-50 | -8.615850e-47 |
| Msa0438070 | Msa1346010 | 0.803355 | 3.627321e-49 | -8.615850e-47 |
| Msa0466850 | Msa1346010 | 0.855344 | 6.720055e-62 | -8.615850e-47 |
| Msa0480550 | Msa1346010 | 0.818034 | 2.419186e-52 | -8.615850e-47 |
| Msa0481770 | Msa1346010 | 0.843829 | 1.101667e-58 | -8.615850e-47 |
| Msa0998900 | Msa1346010 | -0.803255 | 3.803558e-49 | -8.615850e-47 |
| Msa1080650 | Msa1346010 | 0.803478 | 3.419875e-49 | -8.615850e-47 |
| Msa0291920 | Msa1346010 | 0.811567 | 6.562600e-51 | -8.615850e-47 |
| Msa1122920 | Msa1346010 | -0.827660 | 1.383927e-54 | -8.615850e-47 |
| Msa1158610 | Msa1346010 | 0.818418 | 1.980318e-52 | -8.615850e-47 |
| Msa1177360 | Msa1346010 | -0.813573 | 2.390806e-51 | -8.615850e-47 |
| Msa1183750 | Msa1346010 | 0.812686 | 3.741867e-51 | -8.615850e-47 |
| Msa1223560 | Msa1346010 | 0.821465 | 3.980728e-53 | -8.615850e-47 |
| Msa0513670 | Msa1346010 | 0.855161 | 7.594659e-62 | -8.615850e-47 |
| Msa0523080 | Msa1346010 | 0.869200 | 3.699015e-66 | -8.615850e-47 |
| Msa0554420 | Msa1346010 | -0.808993 | 2.357191e-50 | -8.615850e-47 |
| Msa0568110 | Msa1346010 | 0.811709 | 6.113924e-51 | -8.615850e-47 |
| Msa0570460 | Msa1346010 | 0.832495 | 9.151879e-56 | -8.615850e-47 |
| Msa0865810 | Msa1346010 | 0.803394 | 3.559304e-49 | -8.615850e-47 |
| Msa0865830 | Msa1346010 | 0.829375 | 5.331424e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346010 | MtrunA17_Chr3g0142751 | 95.661 | 507 | 22 | 0 | 1 | 507 | 102 | 608 | 0.0 | 1002 |
| Msa1346010 | MtrunA17_Chr1g0156671 | 61.858 | 506 | 174 | 3 | 1 | 505 | 107 | 594 | 0.0 | 624 |
| Msa1346010 | MtrunA17_Chr1g0200831 | 52.165 | 485 | 217 | 5 | 1 | 483 | 142 | 613 | 2.83e-164 | 480 |
| Msa1346010 | MtrunA17_Chr8g0385111 | 45.376 | 465 | 232 | 5 | 1 | 459 | 130 | 578 | 2.14e-122 | 372 |
| Msa1346010 | MtrunA17_Chr3g0130981 | 44.754 | 467 | 239 | 6 | 1 | 465 | 121 | 570 | 5.43e-117 | 358 |
| Msa1346010 | MtrunA17_Chr1g0188181 | 24.424 | 434 | 247 | 7 | 19 | 382 | 154 | 576 | 2.61e-29 | 121 |
| Msa1346010 | MtrunA17_Chr1g0168081 | 32.536 | 209 | 131 | 3 | 21 | 226 | 43 | 244 | 2.04e-19 | 91.7 |
| Msa1346010 | MtrunA17_Chr1g0168081 | 31.646 | 158 | 93 | 3 | 239 | 392 | 437 | 583 | 2.18e-14 | 75.9 |
| Msa1346010 | MtrunA17_Chr1g0186481 | 29.508 | 244 | 154 | 5 | 21 | 254 | 46 | 281 | 2.81e-17 | 84.7 |
| Msa1346010 | MtrunA17_Chr1g0186481 | 32.432 | 185 | 108 | 5 | 212 | 392 | 382 | 553 | 3.83e-15 | 78.2 |
| Msa1346010 | MtrunA17_Chr1g0179471 | 34.014 | 147 | 83 | 3 | 239 | 383 | 384 | 518 | 1.35e-16 | 82.4 |
| Msa1346010 | MtrunA17_Chr6g0475791 | 35.758 | 165 | 88 | 6 | 225 | 382 | 301 | 454 | 9.65e-16 | 79.7 |
| Msa1346010 | MtrunA17_Chr6g0475791 | 27.193 | 228 | 144 | 5 | 19 | 235 | 34 | 250 | 2.47e-13 | 72.0 |
| Msa1346010 | MtrunA17_Chr1g0198031 | 25.701 | 214 | 151 | 3 | 16 | 226 | 21 | 229 | 2.97e-14 | 75.5 |
| Msa1346010 | MtrunA17_Chr1g0198031 | 32.237 | 152 | 89 | 3 | 240 | 387 | 433 | 574 | 6.95e-14 | 74.3 |
| Msa1346010 | MtrunA17_Chr4g0009451 | 25.234 | 214 | 154 | 2 | 21 | 228 | 19 | 232 | 6.09e-13 | 70.9 |
| Msa1346010 | MtrunA17_Chr3g0126591 | 32.237 | 152 | 86 | 3 | 239 | 383 | 423 | 564 | 6.58e-13 | 71.2 |
| Msa1346010 | MtrunA17_Chr3g0126591 | 28.774 | 212 | 137 | 5 | 21 | 226 | 26 | 229 | 3.04e-11 | 65.9 |
| Msa1346010 | MtrunA17_Chr7g0265631 | 31.544 | 149 | 86 | 2 | 242 | 384 | 396 | 534 | 1.07e-12 | 70.5 |
| Msa1346010 | MtrunA17_Chr7g0265631 | 26.977 | 215 | 142 | 5 | 21 | 228 | 29 | 235 | 2.39e-12 | 69.3 |
| Msa1346010 | MtrunA17_Chr7g0239391 | 23.394 | 218 | 158 | 4 | 21 | 232 | 25 | 239 | 8.59e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346010 | AT1G30755.5 | 51.859 | 511 | 227 | 6 | 1 | 505 | 113 | 610 | 4.90e-171 | 496 |
| Msa1346010 | AT1G30755.1 | 51.859 | 511 | 227 | 6 | 1 | 505 | 113 | 610 | 4.90e-171 | 496 |
| Msa1346010 | AT1G30755.6 | 51.859 | 511 | 227 | 6 | 1 | 505 | 113 | 610 | 4.90e-171 | 496 |
| Msa1346010 | AT1G34320.1 | 49.796 | 490 | 223 | 8 | 1 | 480 | 135 | 611 | 5.54e-153 | 451 |
| Msa1346010 | AT1G34320.2 | 49.796 | 490 | 223 | 8 | 1 | 480 | 135 | 611 | 5.54e-153 | 451 |
| Msa1346010 | AT1G30755.3 | 60.117 | 341 | 135 | 1 | 1 | 340 | 113 | 453 | 3.99e-143 | 419 |
| Msa1346010 | AT1G30755.4 | 58.716 | 327 | 134 | 1 | 1 | 326 | 113 | 439 | 2.40e-130 | 386 |
| Msa1346010 | AT1G30755.2 | 58.716 | 327 | 134 | 1 | 1 | 326 | 113 | 439 | 2.40e-130 | 386 |
| Msa1346010 | AT5G08660.3 | 45.455 | 462 | 224 | 8 | 6 | 459 | 134 | 575 | 5.49e-122 | 372 |
| Msa1346010 | AT5G08660.1 | 45.455 | 462 | 224 | 8 | 6 | 459 | 134 | 575 | 5.49e-122 | 372 |
| Msa1346010 | AT5G08660.4 | 45.455 | 462 | 224 | 8 | 6 | 459 | 134 | 575 | 5.49e-122 | 372 |
| Msa1346010 | AT5G08660.2 | 51.765 | 340 | 156 | 2 | 6 | 340 | 134 | 470 | 2.19e-105 | 323 |
| Msa1346010 | AT5G51670.1 | 24.941 | 421 | 251 | 8 | 21 | 382 | 37 | 451 | 5.36e-27 | 114 |
| Msa1346010 | AT5G51670.2 | 24.941 | 421 | 251 | 8 | 21 | 382 | 37 | 451 | 5.36e-27 | 114 |
| Msa1346010 | AT3G23160.1 | 29.439 | 214 | 138 | 4 | 21 | 229 | 43 | 248 | 1.66e-17 | 85.9 |
| Msa1346010 | AT3G23160.1 | 32.692 | 156 | 89 | 4 | 242 | 392 | 361 | 505 | 2.57e-14 | 75.9 |
| Msa1346010 | AT5G04550.1 | 28.372 | 215 | 133 | 5 | 21 | 226 | 26 | 228 | 1.50e-12 | 70.5 |
| Msa1346010 | AT5G04550.1 | 30.921 | 152 | 88 | 2 | 238 | 382 | 429 | 570 | 2.28e-12 | 69.7 |
| Msa1346010 | AT5G04550.2 | 28.372 | 215 | 133 | 5 | 21 | 226 | 26 | 228 | 1.50e-12 | 70.5 |
| Msa1346010 | AT5G04550.2 | 30.921 | 152 | 88 | 2 | 238 | 382 | 429 | 570 | 2.28e-12 | 69.7 |
Find 141 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGAGGTTATACCTCTTTC+TGG | 0.206036 | tig0008063:+16963 | Msa1346010:intergenic |
| CACTAGAAAGGGCTCTTTAT+TGG | 0.209748 | tig0008063:-19919 | Msa1346010:five_prime_UTR |
| TATAATGTGTCCCTCGTATT+TGG | 0.226029 | tig0008063:+17046 | Msa1346010:intergenic |
| GCGAATTGGGTTGCTTTCTT+TGG | 0.239633 | tig0008063:+16365 | Msa1346010:intergenic |
| TGTTTACATTATTGAATTGT+TGG | 0.296282 | tig0008063:-16304 | Msa1346010:CDS |
| ATATACCTCCTCTAAATATC+TGG | 0.305237 | tig0008063:+18326 | Msa1346010:intergenic |
| TTCACCTGATAAGGAGTTCT+TGG | 0.308165 | tig0008063:-15977 | Msa1346010:CDS |
| AGAAAGTGAGTGAAATAAAA+TGG | 0.316068 | tig0008063:+19740 | Msa1346010:intergenic |
| TATTGGGTAAAGCTAGCTAT+AGG | 0.317617 | tig0008063:-19902 | Msa1346010:five_prime_UTR |
| TTTGGTCTTGAGAGGGTGCC+TGG | 0.318517 | tig0008063:+16011 | Msa1346010:intergenic |
| TAAAATCATGAGTTTATATA+TGG | 0.322145 | tig0008063:+15760 | Msa1346010:intergenic |
| TCACGGGAAGTAGTTAGATT+TGG | 0.323364 | tig0008063:-19499 | Msa1346010:CDS |
| AACATCTATCTTCTGCTTAT+CGG | 0.328434 | tig0008063:+16323 | Msa1346010:intergenic |
| CCACCACAACTATAACGTTT+TGG | 0.340346 | tig0008063:-15935 | Msa1346010:CDS |
| TCTTTGGTCCAGATATTTAG+AGG | 0.343093 | tig0008063:-18334 | Msa1346010:CDS |
| ACTAGAAAGGGCTCTTTATT+GGG | 0.349692 | tig0008063:-19918 | Msa1346010:five_prime_UTR |
| GTGAAATAAAATGGCTCCTT+TGG | 0.349733 | tig0008063:+19749 | Msa1346010:intergenic |
| AGGGAAGAAAATATCAATAT+TGG | 0.349870 | tig0008063:-19796 | Msa1346010:CDS |
| GTTCATAAGCACTTAATTCA+TGG | 0.354686 | tig0008063:+18879 | Msa1346010:intergenic |
| TAAAGTGTCTGGAGGCGAAT+TGG | 0.362664 | tig0008063:+16351 | Msa1346010:intergenic |
| AGGTGAACTCCCAGCACTTT+TGG | 0.367675 | tig0008063:+15993 | Msa1346010:intergenic |
| CAGATTAGACTTGGATGTCT+TGG | 0.372829 | tig0008063:-19295 | Msa1346010:CDS |
| TCTAATAATATCCTATCTTC+TGG | 0.378873 | tig0008063:+16108 | Msa1346010:intergenic |
| GTACCCAAGAACTCCTTATC+AGG | 0.382837 | tig0008063:+15973 | Msa1346010:intergenic |
| GTATTTGGAGGAAGGGAGGC+TGG | 0.382938 | tig0008063:+17061 | Msa1346010:intergenic |
| CCAGCTTCACCTAGTCTTTG+AGG | 0.388523 | tig0008063:+17224 | Msa1346010:intergenic |
| CGCATCTTAGACTGAAGTTC+AGG | 0.389412 | tig0008063:+16189 | Msa1346010:intergenic |
| AACAGGGCTCATCAAGGCTT+TGG | 0.390105 | tig0008063:-16572 | Msa1346010:intron |
| TACCTCTTTCTGGATAGAAA+TGG | 0.393069 | tig0008063:+16973 | Msa1346010:intergenic |
| ACAATTAGTCTCAACAGATA+TGG | 0.394875 | tig0008063:-19664 | Msa1346010:CDS |
| CCACCACTGGTGTTTAACTT+TGG | 0.408588 | tig0008063:+19843 | Msa1346010:intergenic |
| CTTTGGATGGGTTGGTGAAT+GGG | 0.411171 | tig0008063:-16555 | Msa1346010:CDS |
| GCTTTGGATGGGTTGGTGAA+TGG | 0.411360 | tig0008063:-16556 | Msa1346010:CDS |
| CGTGAGTTCCTTGGAAATCA+TGG | 0.412240 | tig0008063:-18059 | Msa1346010:intron |
| ATTGGGTAAAGCTAGCTATA+GGG | 0.415408 | tig0008063:-19901 | Msa1346010:five_prime_UTR |
| ACGAATTGCTTGATGTATAT+AGG | 0.416690 | tig0008063:+18079 | Msa1346010:intergenic |
| TGCTGGGAGTTCACCTGATA+AGG | 0.417744 | tig0008063:-15986 | Msa1346010:CDS |
| AGGGCACTCTTAATACTGTT+TGG | 0.425261 | tig0008063:+17013 | Msa1346010:intergenic |
| TTGGATATTATGGATGGCTT+AGG | 0.426323 | tig0008063:-15916 | Msa1346010:CDS |
| CAAGCAATTCGTGAGTTCCT+TGG | 0.428629 | tig0008063:-18068 | Msa1346010:CDS |
| ACCAGTGGTGGGTTTGTCTC+TGG | 0.431852 | tig0008063:-19831 | Msa1346010:CDS |
| AGACTGAAGTTCAGGTCTCT+TGG | 0.440141 | tig0008063:+16197 | Msa1346010:intergenic |
| AATTTCAAGGAGGAGGAGCC+CGG | 0.440803 | tig0008063:-16079 | Msa1346010:CDS |
| TTGATTGTATTTGCCGCAAA+TGG | 0.442663 | tig0008063:+16746 | Msa1346010:intergenic |
| AGAAGATAGGATATTATTAG+AGG | 0.443661 | tig0008063:-16106 | Msa1346010:CDS |
| AGATTAGACTTGGATGTCTT+GGG | 0.448582 | tig0008063:-19294 | Msa1346010:CDS |
| CATCAAGGCTTTGGATGGGT+TGG | 0.449569 | tig0008063:-16563 | Msa1346010:CDS |
| AAAGTGTCTGGAGGCGAATT+GGG | 0.454666 | tig0008063:+16352 | Msa1346010:intergenic |
| GACCGTGTGGGCATTGCCAT+TGG | 0.460170 | tig0008063:+16228 | Msa1346010:intergenic |
| TATTAGAGGAGGTAATTTCA+AGG | 0.460679 | tig0008063:-16092 | Msa1346010:CDS |
| ACATTATTGAATTGTTGGTA+TGG | 0.467171 | tig0008063:-16299 | Msa1346010:CDS |
| CTCAACTTTCTCCAGAAGAT+AGG | 0.474373 | tig0008063:-16119 | Msa1346010:CDS |
| TCACCTGATAAGGAGTTCTT+GGG | 0.476603 | tig0008063:-15976 | Msa1346010:CDS |
| CTTATCATAGGTCACTAGAA+AGG | 0.481697 | tig0008063:-19931 | None:intergenic |
| TACCAAGAATCTTCAAAAGA+AGG | 0.482492 | tig0008063:+15851 | Msa1346010:intergenic |
| GGGCTCATCAAGGCTTTGGA+TGG | 0.482723 | tig0008063:-16568 | Msa1346010:CDS |
| GACAGAAACAACAAGCCATT+GGG | 0.486617 | tig0008063:-16144 | Msa1346010:CDS |
| CCTCTCAAGACCAAAAGTGC+TGG | 0.487668 | tig0008063:-16003 | Msa1346010:CDS |
| CTCTCAAGACCAAAAGTGCT+GGG | 0.492885 | tig0008063:-16002 | Msa1346010:CDS |
| TATCGGCGTAGTAAAGTGTC+TGG | 0.492972 | tig0008063:+16340 | Msa1346010:intergenic |
| ACCTTTCAGAGGAAGATTCA+AGG | 0.494840 | tig0008063:+18814 | Msa1346010:intergenic |
| TGACATTGCAGTAACGACTT+TGG | 0.497519 | tig0008063:-16399 | Msa1346010:intron |
| TTATCATAGGTCACTAGAAA+GGG | 0.499151 | tig0008063:-19930 | None:intergenic |
| AACGTTATAGTTGTGGTGGT+TGG | 0.507765 | tig0008063:+15939 | Msa1346010:intergenic |
| GTTCTTGATACACTTGGAAG+TGG | 0.508568 | tig0008063:-19870 | Msa1346010:five_prime_UTR |
| AGGAGGTAATTTCAAGGAGG+AGG | 0.509239 | tig0008063:-16086 | Msa1346010:CDS |
| GATGTAGGTTGTGCCATTGT+GGG | 0.511411 | tig0008063:+19461 | Msa1346010:intergenic |
| CGATGTAGGTTGTGCCATTG+TGG | 0.512886 | tig0008063:+19460 | Msa1346010:intergenic |
| ATCCATTTCTATCCAGAAAG+AGG | 0.516436 | tig0008063:-16975 | Msa1346010:intron |
| AGACAGAAACAACAAGCCAT+TGG | 0.517679 | tig0008063:-16145 | Msa1346010:CDS |
| CCTCAAAGACTAGGTGAAGC+TGG | 0.518624 | tig0008063:-17224 | Msa1346010:CDS |
| ACGAGGGACACATTATATCA+AGG | 0.522467 | tig0008063:-17040 | Msa1346010:CDS |
| AAGAATTAAATGTATTCTCA+CGG | 0.524963 | tig0008063:-19516 | Msa1346010:CDS |
| AATGGATGGTGAATAATTGT+CGG | 0.528573 | tig0008063:+15812 | Msa1346010:intergenic |
| ATGAAATATCAGATTAGACT+TGG | 0.530537 | tig0008063:-19304 | Msa1346010:intron |
| GGCTCATCAAGGCTTTGGAT+GGG | 0.531203 | tig0008063:-16567 | Msa1346010:CDS |
| CATTCAGTTCCTCAAGAAGG+AGG | 0.532398 | tig0008063:-19709 | Msa1346010:CDS |
| AATTTAAAACCTCCTTCTTG+AGG | 0.532695 | tig0008063:+19700 | Msa1346010:intergenic |
| GTGGAAGTTCTTGATACACT+TGG | 0.535597 | tig0008063:-19876 | Msa1346010:five_prime_UTR |
| TTCCGCTTTGATATGAGTGA+AGG | 0.542865 | tig0008063:+16796 | Msa1346010:intergenic |
| TCCTTGAATCTTCCTCTGAA+AGG | 0.546389 | tig0008063:-18815 | Msa1346010:intron |
| GGTGCTGTCAAGTATACTAA+AGG | 0.548639 | tig0008063:-17248 | Msa1346010:CDS |
| TATTTGGAGGAAGGGAGGCT+GGG | 0.551779 | tig0008063:+17062 | Msa1346010:intergenic |
| CTGCCAAGAAAACTCATGCC+AGG | 0.553142 | tig0008063:-16029 | Msa1346010:CDS |
| CCAAAGTTAAACACCAGTGG+TGG | 0.555780 | tig0008063:-19843 | Msa1346010:CDS |
| GCCAGAGACAAACCCACCAC+TGG | 0.556299 | tig0008063:+19830 | Msa1346010:intergenic |
| AGAATTAAATGTATTCTCAC+GGG | 0.556492 | tig0008063:-19515 | Msa1346010:CDS |
| TATCCAAAACGTTATAGTTG+TGG | 0.558251 | tig0008063:+15932 | Msa1346010:intergenic |
| TCAGTGGCTCGTACCATTTG+CGG | 0.558291 | tig0008063:-16759 | Msa1346010:CDS |
| GTCTCTGGCAAGCTTTCCAG+AGG | 0.561603 | tig0008063:-19816 | Msa1346010:CDS |
| AAACATTCAGTTCCTCAAGA+AGG | 0.562368 | tig0008063:-19712 | Msa1346010:CDS |
| ATCTTACAGAGCTAATCAAA+TGG | 0.562545 | tig0008063:+16271 | Msa1346010:intergenic |
| TGGATTGCAACCGAGATGGA+AGG | 0.565419 | tig0008063:+16993 | Msa1346010:intergenic |
| GAAATGGATTGCAACCGAGA+TGG | 0.566963 | tig0008063:+16989 | Msa1346010:intergenic |
| TGTCCCTCGTATTTGGAGGA+AGG | 0.567652 | tig0008063:+17053 | Msa1346010:intergenic |
| AATGTGTCCCTCGTATTTGG+AGG | 0.568090 | tig0008063:+17049 | Msa1346010:intergenic |
| AGATGCCGAAAAGACAATGC+AGG | 0.570619 | tig0008063:-19253 | Msa1346010:CDS |
| ATTAGCAAAAGTGAGGAACT+TGG | 0.571334 | tig0008063:-16054 | Msa1346010:CDS |
| GTCCCTCGTATTTGGAGGAA+GGG | 0.574579 | tig0008063:+17054 | Msa1346010:intergenic |
| ACAAAATGCCTCGAGGCCAA+TGG | 0.577458 | tig0008063:-16244 | Msa1346010:CDS |
| ATTTCAAGGAGGAGGAGCCC+GGG | 0.577633 | tig0008063:-16078 | Msa1346010:CDS |
| TGAAGTTCAGGTCTCTTGGA+AGG | 0.578768 | tig0008063:+16201 | Msa1346010:intergenic |
| CCAAAACGTTATAGTTGTGG+TGG | 0.583947 | tig0008063:+15935 | Msa1346010:intergenic |
| TTAAGAGTGCCCTTCCATCT+CGG | 0.586379 | tig0008063:-17003 | Msa1346010:CDS |
| GGCCAATGGCAATGCCCACA+CGG | 0.587290 | tig0008063:-16230 | Msa1346010:CDS |
| TTCTTGATACACTTGGAAGT+GGG | 0.588407 | tig0008063:-19869 | Msa1346010:five_prime_UTR |
| ATTGTTAACAGGGCTCATCA+AGG | 0.593222 | tig0008063:-16578 | Msa1346010:intron |
| AGATAGGATATTATTAGAGG+AGG | 0.593450 | tig0008063:-16103 | Msa1346010:CDS |
| TAAAGCTAGCTATAGGGCGG+TGG | 0.594166 | tig0008063:-19895 | Msa1346010:five_prime_UTR |
| TGTTCATACCATGATTTCCA+AGG | 0.595508 | tig0008063:+18051 | Msa1346010:intergenic |
| GGATTGCAACCGAGATGGAA+GGG | 0.595874 | tig0008063:+16994 | Msa1346010:intergenic |
| TAGAGGAGGTAATTTCAAGG+AGG | 0.599131 | tig0008063:-16089 | Msa1346010:CDS |
| ATATATCTGATTGATCATGT+TGG | 0.602694 | tig0008063:+17184 | Msa1346010:intergenic |
| TCTAAGTTCTAACCTTTCAG+AGG | 0.602716 | tig0008063:+18803 | Msa1346010:intergenic |
| GGAGAAAGTTGAGTTCCCAA+TGG | 0.606564 | tig0008063:+16129 | Msa1346010:intergenic |
| ACTAAAGGTCCTCAAAGACT+AGG | 0.608726 | tig0008063:-17233 | Msa1346010:CDS |
| CAAAGTTAAACACCAGTGGT+GGG | 0.625267 | tig0008063:-19842 | Msa1346010:CDS |
| CCTCCCTTCCTCCAAATACG+AGG | 0.628725 | tig0008063:-17057 | Msa1346010:CDS |
| ACCTTGAGAAATGTCGATGT+AGG | 0.628997 | tig0008063:+19446 | Msa1346010:intergenic |
| GGGCATTGCCATTGGCCTCG+AGG | 0.630544 | tig0008063:+16236 | Msa1346010:intergenic |
| ACCTACATCGACATTTCTCA+AGG | 0.631682 | tig0008063:-19447 | Msa1346010:intron |
| TTGGTGAATGGGCAAACACA+AGG | 0.636366 | tig0008063:-16544 | Msa1346010:intron |
| CCTCGTATTTGGAGGAAGGG+AGG | 0.639013 | tig0008063:+17057 | Msa1346010:intergenic |
| GTAGCTAATACAATAACCAA+AGG | 0.639145 | tig0008063:-19765 | Msa1346010:CDS |
| CTCCCTTCCTCCAAATACGA+GGG | 0.644751 | tig0008063:-17056 | Msa1346010:CDS |
| TTGGTCCAGATATTTAGAGG+AGG | 0.646740 | tig0008063:-18331 | Msa1346010:intron |
| AGTTCAGGTCTCTTGGAAGG+AGG | 0.660563 | tig0008063:+16204 | Msa1346010:intergenic |
| CTCCTTCACTCATATCAAAG+CGG | 0.662984 | tig0008063:-16798 | Msa1346010:CDS |
| CCCGGGAATTAGCAAAAGTG+AGG | 0.666356 | tig0008063:-16061 | Msa1346010:CDS |
| CTTGGAAGGAGGAGACCGTG+TGG | 0.669539 | tig0008063:+16215 | Msa1346010:intergenic |
| TTGGAAGGAGGAGACCGTGT+GGG | 0.672365 | tig0008063:+16216 | Msa1346010:intergenic |
| CGGCGTAGTAAAGTGTCTGG+AGG | 0.672625 | tig0008063:+16343 | Msa1346010:intergenic |
| TCTCTGGCAAGCTTTCCAGA+GGG | 0.673396 | tig0008063:-19815 | Msa1346010:CDS |
| ATGCCAAAGTTAAACACCAG+TGG | 0.681956 | tig0008063:-19846 | Msa1346010:CDS |
| GTGGTGGTTGGCGATGAGTG+TGG | 0.685493 | tig0008063:+15951 | Msa1346010:intergenic |
| CTGAACTTCAGTCTAAGATG+CGG | 0.686840 | tig0008063:-16188 | Msa1346010:CDS |
| AAATGAATAAGACTCTTCAG+TGG | 0.700574 | tig0008063:-16775 | Msa1346010:CDS |
| GGGTAAAGCTAGCTATAGGG+CGG | 0.706000 | tig0008063:-19898 | Msa1346010:five_prime_UTR |
| ATATGTGTAAAGACCCACAA+TGG | 0.711309 | tig0008063:-19474 | Msa1346010:CDS |
| TAGTCTAGTTCATCATACTG+CGG | 0.726979 | tig0008063:-19223 | Msa1346010:intron |
| GATCCAGACAAAATGCCTCG+AGG | 0.746283 | tig0008063:-16251 | Msa1346010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTTTTGAAATTTTTA+GGG | - | tig0008063:16125-16144 | Msa1346010:CDS | 10.0% |
| !! | TTTATTAATTAATTATGAGT+TGG | + | tig0008063:16305-16324 | Msa1346010:intergenic | 10.0% |
| !! | ATATATAATATAAAAGATCT+AGG | + | tig0008063:16590-16609 | Msa1346010:intergenic | 10.0% |
| !!! | AATATATTTTTGACAAAAAA+AGG | + | tig0008063:17099-17118 | Msa1346010:intergenic | 10.0% |
| !!! | ATTTAAAATAAAAATTAGCA+GGG | + | tig0008063:18080-18099 | Msa1346010:intergenic | 10.0% |
| !!! | AATTTAAAATAAAAATTAGC+AGG | + | tig0008063:18081-18100 | Msa1346010:intergenic | 10.0% |
| !! | ATTAAAATTGTACAAAAAAA+TGG | + | tig0008063:19873-19892 | Msa1346010:intergenic | 10.0% |
| !!! | CTTATCTTTTTGAAATTTTT+AGG | - | tig0008063:16124-16143 | Msa1346010:CDS | 15.0% |
| !! | TGATTATCAACAAAAAATTA+AGG | - | tig0008063:16818-16837 | Msa1346010:intron | 15.0% |
| !! | TTATTTAAATGAATACTTCT+TGG | - | tig0008063:16938-16957 | Msa1346010:intron | 15.0% |
| !!! | ATGTATATTGTAAATTTTTC+TGG | - | tig0008063:18024-18043 | Msa1346010:intron | 15.0% |
| !! | TAAAATCATGAGTTTATATA+TGG | + | tig0008063:19907-19926 | Msa1346010:intergenic | 15.0% |
| !! | AAATTCATAGCAAAAACAAA+AGG | + | tig0008063:16086-16105 | Msa1346010:intergenic | 20.0% |
| !! | TTTCAAAAAGATAAGTGATA+AGG | + | tig0008063:16119-16138 | Msa1346010:intergenic | 20.0% |
| !! | AAGAATTAAATGTATTCTCA+CGG | - | tig0008063:16148-16167 | Msa1346010:CDS | 20.0% |
| !!! | CTAATCTGATATTTCATTTT+CGG | + | tig0008063:16357-16376 | Msa1346010:intergenic | 20.0% |
| !! | AGAAACTAAAAAAATGACAA+TGG | + | tig0008063:16540-16559 | Msa1346010:intergenic | 20.0% |
| !! | TATAAAAGATCTAGGAATTA+AGG | + | tig0008063:16582-16601 | Msa1346010:intergenic | 20.0% |
| !!! | TAATTTTCTCGTTTTAATGT+AGG | - | tig0008063:16755-16774 | Msa1346010:CDS | 20.0% |
| !! | TCAACAAAAAATTAAGGAAA+TGG | - | tig0008063:16824-16843 | Msa1346010:intron | 20.0% |
| !!! | CTATTTTATCTTAACATTTG+AGG | - | tig0008063:16997-17016 | Msa1346010:CDS | 20.0% |
| !! | TTGAAAACCAAATTCTTATT+GGG | + | tig0008063:17047-17066 | Msa1346010:intergenic | 20.0% |
| !! | TTTGAAAACCAAATTCTTAT+TGG | + | tig0008063:17048-17067 | Msa1346010:intergenic | 20.0% |
| !!! | TTCTGAGGATTTAAATTTTT+AGG | + | tig0008063:17193-17212 | Msa1346010:intergenic | 20.0% |
| !!! | AGGAGGTATATTATTAATAA+AGG | - | tig0008063:17350-17369 | Msa1346010:intron | 20.0% |
| !!! | TTTTCTTCAATAAAAAGAGA+AGG | + | tig0008063:17772-17791 | Msa1346010:intergenic | 20.0% |
| !! | AAAATGAGCATAAAAAAGAT+TGG | + | tig0008063:17860-17879 | Msa1346010:intergenic | 20.0% |
| !! | CACAAAACAAAAAATGATTA+AGG | + | tig0008063:18243-18262 | Msa1346010:intergenic | 20.0% |
| !! | ACGAAAACATTTATTTGATT+AGG | + | tig0008063:18547-18566 | Msa1346010:intergenic | 20.0% |
| !!! | TCTAGTCCTTTTTAATTTTT+TGG | - | tig0008063:18753-18772 | Msa1346010:intron | 20.0% |
| !! | AATAAATTTCAATCTTCAAG+AGG | + | tig0008063:18803-18822 | Msa1346010:intergenic | 20.0% |
| !! | TTGAATTATGCTAAATGTAA+TGG | - | tig0008063:18828-18847 | Msa1346010:CDS | 20.0% |
| !!! | AAAAATATTTAAAACCTGAC+AGG | + | tig0008063:18981-19000 | Msa1346010:intergenic | 20.0% |
| !! | TGTTTACATTATTGAATTGT+TGG | - | tig0008063:19360-19379 | Msa1346010:intron | 20.0% |
| !! | AAATTGTACAAAAAAATGGA+TGG | + | tig0008063:19869-19888 | Msa1346010:intergenic | 20.0% |
| ! | AGGGAAGAAAATATCAATAT+TGG | - | tig0008063:15868-15887 | Msa1346010:three_prime_UTR | 25.0% |
| ! | AGAAAGTGAGTGAAATAAAA+TGG | + | tig0008063:15927-15946 | Msa1346010:intergenic | 25.0% |
| ! | AGAATTAAATGTATTCTCAC+GGG | - | tig0008063:16149-16168 | Msa1346010:CDS | 25.0% |
| ! | ATGAAATATCAGATTAGACT+TGG | - | tig0008063:16360-16379 | Msa1346010:CDS | 25.0% |
| !! | TGCATAATCTTTTATCTCAT+TGG | - | tig0008063:16493-16512 | Msa1346010:intron | 25.0% |
| !! | TTCTTTGCTTGTTAAAGTTA+GGG | - | tig0008063:16692-16711 | Msa1346010:intron | 25.0% |
| ! | ATACCAAGATTTGACAAAAA+GGG | + | tig0008063:16914-16933 | Msa1346010:intergenic | 25.0% |
| ! | AATACCAAGATTTGACAAAA+AGG | + | tig0008063:16915-16934 | Msa1346010:intergenic | 25.0% |
| !! | TTTTATCTTAACATTTGAGG+TGG | - | tig0008063:17000-17019 | Msa1346010:CDS | 25.0% |
| ! | TAGTTATCCCAATAAGAATT+TGG | - | tig0008063:17037-17056 | Msa1346010:CDS | 25.0% |
| ! | GTCAAAAATATATTCTTTCC+TGG | - | tig0008063:17105-17124 | Msa1346010:intron | 25.0% |
| ! | TTCATCTGAAAATATTTCTC+AGG | + | tig0008063:17134-17153 | Msa1346010:intergenic | 25.0% |
| ! | AGAAGTTATCTAATGATTGA+CGG | - | tig0008063:17209-17228 | Msa1346010:CDS | 25.0% |
| ! | ACTTGAAAAAGAAATCTCTT+TGG | - | tig0008063:17314-17333 | Msa1346010:intron | 25.0% |
| ! | TAATATCCAAAACTTCATTC+AGG | + | tig0008063:17431-17450 | Msa1346010:intergenic | 25.0% |
| ! | AATAAAAAGAGAAGGAATGT+GGG | + | tig0008063:17764-17783 | Msa1346010:intergenic | 25.0% |
| ! | AAGAATCATGACATATAGAT+AGG | + | tig0008063:17806-17825 | Msa1346010:intergenic | 25.0% |
| ! | TACATAGCGTTTATTTACAA+GGG | + | tig0008063:18009-18028 | Msa1346010:intergenic | 25.0% |
| ! | ATACATAGCGTTTATTTACA+AGG | + | tig0008063:18010-18029 | Msa1346010:intergenic | 25.0% |
| !!! | TTCTGCTAAATCATTTTTTC+TGG | - | tig0008063:18160-18179 | Msa1346010:intron | 25.0% |
| ! | TAACTCATAACAACATCTAA+TGG | - | tig0008063:18347-18366 | Msa1346010:CDS | 25.0% |
| ! | TCTAAATCGTTATGAAATTG+TGG | - | tig0008063:18377-18396 | Msa1346010:CDS | 25.0% |
| ! | CTAAATCGTTATGAAATTGT+GGG | - | tig0008063:18378-18397 | Msa1346010:CDS | 25.0% |
| ! | ATATATCTGATTGATCATGT+TGG | + | tig0008063:18483-18502 | Msa1346010:intergenic | 25.0% |
| ! | TTTATTGCGCTAACAAAATT+TGG | - | tig0008063:18517-18536 | Msa1346010:intron | 25.0% |
| ! | TTATTGCGCTAACAAAATTT+GGG | - | tig0008063:18518-18537 | Msa1346010:intron | 25.0% |
| !!! | AGTCCTTTTTAATTTTTTGG+TGG | - | tig0008063:18756-18775 | Msa1346010:intron | 25.0% |
| !!! | GTCCTTTTTAATTTTTTGGT+GGG | - | tig0008063:18757-18776 | Msa1346010:intron | 25.0% |
| ! | TACCCACCAAAAAATTAAAA+AGG | + | tig0008063:18762-18781 | Msa1346010:intergenic | 25.0% |
| !!! | TTTAATTTTTTGGTGGGTAT+TGG | - | tig0008063:18763-18782 | Msa1346010:intron | 25.0% |
| !!! | TTAATTTTTTGGTGGGTATT+GGG | - | tig0008063:18764-18783 | Msa1346010:intron | 25.0% |
| ! | TTATAAACATGAATCTCTCT+TGG | - | tig0008063:19147-19166 | Msa1346010:intron | 25.0% |
| ! | TATAAACATGAATCTCTCTT+GGG | - | tig0008063:19148-19167 | Msa1346010:intron | 25.0% |
| ! | GTTATTTGTTCACATTATAC+AGG | + | tig0008063:19193-19212 | Msa1346010:intergenic | 25.0% |
| ! | TAATGTGAACAAATAACAAG+TGG | - | tig0008063:19196-19215 | Msa1346010:intron | 25.0% |
| ! | ACATTATTGAATTGTTGGTA+TGG | - | tig0008063:19365-19384 | Msa1346010:intron | 25.0% |
| ! | TCTAATAATATCCTATCTTC+TGG | + | tig0008063:19559-19578 | Msa1346010:intergenic | 25.0% |
| ! | AGAAGATAGGATATTATTAG+AGG | - | tig0008063:19558-19577 | Msa1346010:intron | 25.0% |
| !!! | CTATAACGTTTTGGATATTA+TGG | - | tig0008063:19738-19757 | Msa1346010:CDS | 25.0% |
| ! | AATAATTGTCGGCATAAAAA+AGG | + | tig0008063:19844-19863 | Msa1346010:intergenic | 25.0% |
| ! | TATTGATATTTTCTTCCCTC+TGG | + | tig0008063:15867-15886 | Msa1346010:intergenic | 30.0% |
| GTAGCTAATACAATAACCAA+AGG | - | tig0008063:15899-15918 | Msa1346010:exon | 30.0% | |
| ! | AATTTAAAACCTCCTTCTTG+AGG | + | tig0008063:15967-15986 | Msa1346010:intergenic | 30.0% |
| !!! | AAGGAGGTTTTAAATTCAGA+AGG | - | tig0008063:15971-15990 | Msa1346010:CDS | 30.0% |
| ! | ACAATTAGTCTCAACAGATA+TGG | - | tig0008063:16000-16019 | Msa1346010:CDS | 30.0% |
| ! | GTTAATAAGTTTTGCTGAGA+TGG | - | tig0008063:16027-16046 | Msa1346010:CDS | 30.0% |
| ATAAGTGATAAGGAACACAA+AGG | + | tig0008063:16109-16128 | Msa1346010:intergenic | 30.0% | |
| TCATAAATAAGCAACGTATC+AGG | + | tig0008063:16250-16269 | Msa1346010:intergenic | 30.0% | |
| ACGTTGCTTATTTATGACAA+CGG | - | tig0008063:16253-16272 | Msa1346010:CDS | 30.0% | |
| GAAAAACATATGAATACACC+TGG | + | tig0008063:16634-16653 | Msa1346010:intergenic | 30.0% | |
| ! | GTTCTTTGCTTGTTAAAGTT+AGG | - | tig0008063:16691-16710 | Msa1346010:intron | 30.0% |
| !! | TTCCATTGAATGCTTTTTGT+AGG | - | tig0008063:16716-16735 | Msa1346010:intron | 30.0% |
| !! | AACCTACAAAAAGCATTCAA+TGG | + | tig0008063:16721-16740 | Msa1346010:intergenic | 30.0% |
| GTTCATAAGCACTTAATTCA+TGG | + | tig0008063:16788-16807 | Msa1346010:intergenic | 30.0% | |
| TACCAAGATTTGACAAAAAG+GGG | + | tig0008063:16913-16932 | Msa1346010:intergenic | 30.0% | |
| AAGGAATTACTCCTATCAAT+GGG | + | tig0008063:17080-17099 | Msa1346010:intergenic | 30.0% | |
| AAAGGAATTACTCCTATCAA+TGG | + | tig0008063:17081-17100 | Msa1346010:intergenic | 30.0% | |
| CAATCATTAGATAACTTCTG+AGG | + | tig0008063:17208-17227 | Msa1346010:intergenic | 30.0% | |
| ATATACCTCCTCTAAATATC+TGG | + | tig0008063:17341-17360 | Msa1346010:intergenic | 30.0% | |
| ACGAATTGCTTGATGTATAT+AGG | + | tig0008063:17588-17607 | Msa1346010:intergenic | 30.0% | |
| CAATAAAAAGAGAAGGAATG+TGG | + | tig0008063:17765-17784 | Msa1346010:intergenic | 30.0% | |
| !! | GAAAGCTTTATTTGGAATCA+TGG | - | tig0008063:18048-18067 | Msa1346010:intron | 30.0% |
| TAATCACATTATTAGAGCCA+TGG | + | tig0008063:18128-18147 | Msa1346010:intergenic | 30.0% | |
| !! | ATGGCTCTAATAATGTGATT+AGG | - | tig0008063:18127-18146 | Msa1346010:intron | 30.0% |
| !!! | GCTAAATCATTTTTTCTGGA+TGG | - | tig0008063:18164-18183 | Msa1346010:intron | 30.0% |
| !!! | ATCATTTTTTCTGGATGGAT+TGG | - | tig0008063:18169-18188 | Msa1346010:intron | 30.0% |
| !! | GCTTACTAAGTAAAAGCATT+TGG | - | tig0008063:18191-18210 | Msa1346010:intron | 30.0% |
| GAAAACTGTGAGATCATTAA+GGG | - | tig0008063:18213-18232 | Msa1346010:intron | 30.0% | |
| ! | GTTATGAAATTGTGGGTTAA+TGG | - | tig0008063:18385-18404 | Msa1346010:CDS | 30.0% |
| ACTAGAAATTGCAAGACAAA+TGG | + | tig0008063:18739-18758 | Msa1346010:intergenic | 30.0% | |
| AAATGAATAAGACTCTTCAG+TGG | - | tig0008063:18889-18908 | Msa1346010:CDS | 30.0% | |
| ! | TATTTAAAACCTGACAGGTA+TGG | + | tig0008063:18976-18995 | Msa1346010:intergenic | 30.0% |
| TACTTGTCGATATTGTTAAC+AGG | - | tig0008063:19075-19094 | Msa1346010:intron | 30.0% | |
| ACTTGTCGATATTGTTAACA+GGG | - | tig0008063:19076-19095 | Msa1346010:intron | 30.0% | |
| AACATCTATCTTCTGCTTAT+CGG | + | tig0008063:19344-19363 | Msa1346010:intergenic | 30.0% | |
| ATCTTACAGAGCTAATCAAA+TGG | + | tig0008063:19396-19415 | Msa1346010:intergenic | 30.0% | |
| AGATAGGATATTATTAGAGG+AGG | - | tig0008063:19561-19580 | Msa1346010:intron | 30.0% | |
| TATTAGAGGAGGTAATTTCA+AGG | - | tig0008063:19572-19591 | Msa1346010:intron | 30.0% | |
| TATCCAAAACGTTATAGTTG+TGG | + | tig0008063:19735-19754 | Msa1346010:intergenic | 30.0% | |
| !! | AACGTTTTGGATATTATGGA+TGG | - | tig0008063:19742-19761 | Msa1346010:CDS | 30.0% |
| !! | TTCCTTCTTTTGAAGATTCT+TGG | - | tig0008063:19811-19830 | Msa1346010:CDS | 30.0% |
| TACCAAGAATCTTCAAAAGA+AGG | + | tig0008063:19816-19835 | Msa1346010:intergenic | 30.0% | |
| AATGGATGGTGAATAATTGT+CGG | + | tig0008063:19855-19874 | Msa1346010:intergenic | 30.0% | |
| ACTAGAAAGGGCTCTTTATT+GGG | - | tig0008063:15746-15765 | Msa1346010:three_prime_UTR | 35.0% | |
| TATTGGGTAAAGCTAGCTAT+AGG | - | tig0008063:15762-15781 | Msa1346010:three_prime_UTR | 35.0% | |
| ATTGGGTAAAGCTAGCTATA+GGG | - | tig0008063:15763-15782 | Msa1346010:three_prime_UTR | 35.0% | |
| TTCTTGATACACTTGGAAGT+GGG | - | tig0008063:15795-15814 | Msa1346010:three_prime_UTR | 35.0% | |
| GTGAAATAAAATGGCTCCTT+TGG | + | tig0008063:15918-15937 | Msa1346010:intergenic | 35.0% | |
| AAACATTCAGTTCCTCAAGA+AGG | - | tig0008063:15952-15971 | Msa1346010:CDS | 35.0% | |
| ATATGTGTAAAGACCCACAA+TGG | - | tig0008063:16190-16209 | Msa1346010:CDS | 35.0% | |
| AGATTAGACTTGGATGTCTT+GGG | - | tig0008063:16370-16389 | Msa1346010:CDS | 35.0% | |
| ! | TAGTCTAGTTCATCATACTG+CGG | - | tig0008063:16441-16460 | Msa1346010:intron | 35.0% |
| TTATCTCATTGGTGAACTGA+TGG | - | tig0008063:16504-16523 | Msa1346010:intron | 35.0% | |
| ! | CAGTTTTCATTTGTATCACC+AGG | - | tig0008063:16613-16632 | Msa1346010:intron | 35.0% |
| ! | TCTAAGTTCTAACCTTTCAG+AGG | + | tig0008063:16864-16883 | Msa1346010:intergenic | 35.0% |
| TTTGACAAAAAGGGGAAGAT+TGG | + | tig0008063:16905-16924 | Msa1346010:intergenic | 35.0% | |
| ! | TTCCCCTTTTTGTCAAATCT+TGG | - | tig0008063:16908-16927 | Msa1346010:intron | 35.0% |
| AACATCTGTTACCCATTGAT+AGG | - | tig0008063:17066-17085 | Msa1346010:CDS | 35.0% | |
| AAAATATTTCTCAGGTCACC+AGG | + | tig0008063:17126-17145 | Msa1346010:intergenic | 35.0% | |
| TCTTTGGTCCAGATATTTAG+AGG | - | tig0008063:17330-17349 | Msa1346010:intron | 35.0% | |
| TCCAAAACTTCATTCAGGTA+GGG | + | tig0008063:17426-17445 | Msa1346010:intergenic | 35.0% | |
| ATCCAAAACTTCATTCAGGT+AGG | + | tig0008063:17427-17446 | Msa1346010:intergenic | 35.0% | |
| TGTTCATACCATGATTTCCA+AGG | + | tig0008063:17616-17635 | Msa1346010:intergenic | 35.0% | |
| TCATCACATCTAGTATGCTT+AGG | - | tig0008063:17712-17731 | Msa1346010:intron | 35.0% | |
| TCATGACATATAGATAGGCA+GGG | + | tig0008063:17801-17820 | Msa1346010:intergenic | 35.0% | |
| ATCATGACATATAGATAGGC+AGG | + | tig0008063:17802-17821 | Msa1346010:intergenic | 35.0% | |
| !! | AATAGCTGCCTTCATTTTTG+TGG | - | tig0008063:17933-17952 | Msa1346010:intron | 35.0% |
| TAGCTCAACCACAAAAATGA+AGG | + | tig0008063:17944-17963 | Msa1346010:intergenic | 35.0% | |
| !! | TTTCTGGCGAAAGCTTTATT+TGG | - | tig0008063:18040-18059 | Msa1346010:intron | 35.0% |
| GGAAAACTGTGAGATCATTA+AGG | - | tig0008063:18212-18231 | Msa1346010:intron | 35.0% | |
| !! | CAGCAATTTCTGTTTCTATC+AGG | - | tig0008063:18572-18591 | Msa1346010:intron | 35.0% |
| TATAATGTGTCCCTCGTATT+TGG | + | tig0008063:18621-18640 | Msa1346010:intergenic | 35.0% | |
| ATCCATTTCTATCCAGAAAG+AGG | - | tig0008063:18689-18708 | Msa1346010:intron | 35.0% | |
| TACCTCTTTCTGGATAGAAA+TGG | + | tig0008063:18694-18713 | Msa1346010:intergenic | 35.0% | |
| AATTTCAATCTTCAAGAGGC+AGG | + | tig0008063:18799-18818 | Msa1346010:intergenic | 35.0% | |
| TTGATTGTATTTGCCGCAAA+TGG | + | tig0008063:18921-18940 | Msa1346010:intergenic | 35.0% | |
| TATTTCCAGCTACGAAAACA+AGG | + | tig0008063:19022-19041 | Msa1346010:intergenic | 35.0% | |
| TCAGTTATCATGGATTCTCA+TGG | + | tig0008063:19234-19253 | Msa1346010:intergenic | 35.0% | |
| AACAGGAACATCAGTTATCA+TGG | + | tig0008063:19244-19263 | Msa1346010:intergenic | 35.0% | |
| ATTAGCAAAAGTGAGGAACT+TGG | - | tig0008063:19610-19629 | Msa1346010:intron | 35.0% | |
| TTGGATATTATGGATGGCTT+AGG | - | tig0008063:19748-19767 | Msa1346010:CDS | 35.0% | |
| CACTAGAAAGGGCTCTTTAT+TGG | - | tig0008063:15745-15764 | Msa1346010:three_prime_UTR | 40.0% | |
| GTGGAAGTTCTTGATACACT+TGG | - | tig0008063:15788-15807 | Msa1346010:three_prime_UTR | 40.0% | |
| GTTCTTGATACACTTGGAAG+TGG | - | tig0008063:15794-15813 | Msa1346010:three_prime_UTR | 40.0% | |
| ATGCCAAAGTTAAACACCAG+TGG | - | tig0008063:15818-15837 | Msa1346010:three_prime_UTR | 40.0% | |
| CAAAGTTAAACACCAGTGGT+GGG | - | tig0008063:15822-15841 | Msa1346010:three_prime_UTR | 40.0% | |
| ! | GTTTTGCTGAGATGGACAAA+AGG | - | tig0008063:16035-16054 | Msa1346010:CDS | 40.0% |
| TCACGGGAAGTAGTTAGATT+TGG | - | tig0008063:16165-16184 | Msa1346010:CDS | 40.0% | |
| ACCTACATCGACATTTCTCA+AGG | - | tig0008063:16217-16236 | Msa1346010:CDS | 40.0% | |
| ACCTTGAGAAATGTCGATGT+AGG | + | tig0008063:16221-16240 | Msa1346010:intergenic | 40.0% | |
| CAGATTAGACTTGGATGTCT+TGG | - | tig0008063:16369-16388 | Msa1346010:CDS | 40.0% | |
| ! | GAACTCCTGCATTGTCTTTT+CGG | + | tig0008063:16419-16438 | Msa1346010:intergenic | 40.0% |
| TCATACTGCGGTAAGCTTAT+TGG | - | tig0008063:16453-16472 | Msa1346010:intron | 40.0% | |
| CATTTATGTTTCCCTGCTTC+TGG | - | tig0008063:16658-16677 | Msa1346010:intron | 40.0% | |
| TCCTTGAATCTTCCTCTGAA+AGG | - | tig0008063:16849-16868 | Msa1346010:intron | 40.0% | |
| ACCTTTCAGAGGAAGATTCA+AGG | + | tig0008063:16853-16872 | Msa1346010:intergenic | 40.0% | |
| TACACGCTCTGTATAAATGC+AGG | - | tig0008063:17235-17254 | Msa1346010:CDS | 40.0% | |
| TTGGTCCAGATATTTAGAGG+AGG | - | tig0008063:17333-17352 | Msa1346010:intron | 40.0% | |
| CCAAAACTTCATTCAGGTAG+GGG | + | tig0008063:17425-17444 | Msa1346010:intergenic | 40.0% | |
| GTTGTTACAGTCTTCTTCCA+TGG | - | tig0008063:18108-18127 | Msa1346010:CDS | 40.0% | |
| ATCTATTGCGTAGAACTCGT+TGG | - | tig0008063:18317-18336 | Msa1346010:intron | 40.0% | |
| ! | TGAAATTGTGGGTTAATGGC+AGG | - | tig0008063:18389-18408 | Msa1346010:CDS | 40.0% |
| ! | GGTGCTGTCAAGTATACTAA+AGG | - | tig0008063:18416-18435 | Msa1346010:intron | 40.0% |
| ACTAAAGGTCCTCAAAGACT+AGG | - | tig0008063:18431-18450 | Msa1346010:intron | 40.0% | |
| ACGAGGGACACATTATATCA+AGG | - | tig0008063:18624-18643 | Msa1346010:intron | 40.0% | |
| ! | AGGGCACTCTTAATACTGTT+TGG | + | tig0008063:18654-18673 | Msa1346010:intergenic | 40.0% |
| CAAATGGATGTCCAGGAAAA+GGG | + | tig0008063:18723-18742 | Msa1346010:intergenic | 40.0% | |
| ACAAATGGATGTCCAGGAAA+AGG | + | tig0008063:18724-18743 | Msa1346010:intergenic | 40.0% | |
| CTCCTTCACTCATATCAAAG+CGG | - | tig0008063:18866-18885 | Msa1346010:CDS | 40.0% | |
| TTCCGCTTTGATATGAGTGA+AGG | + | tig0008063:18871-18890 | Msa1346010:intergenic | 40.0% | |
| ! | GATTTTTGTCCATACCTGTC+AGG | - | tig0008063:18964-18983 | Msa1346010:intron | 40.0% |
| !!! | TTTTTTTTTTCTCCCCGTGC+TGG | - | tig0008063:18996-19015 | Msa1346010:intron | 40.0% |
| ATTGTTAACAGGGCTCATCA+AGG | - | tig0008063:19086-19105 | Msa1346010:intron | 40.0% | |
| AAATAACAAGTGGAGTCAGC+AGG | - | tig0008063:19206-19225 | Msa1346010:intron | 40.0% | |
| CGTTACTGCAATGTCAAAAC+AGG | + | tig0008063:19261-19280 | Msa1346010:intergenic | 40.0% | |
| TGACATTGCAGTAACGACTT+TGG | - | tig0008063:19265-19284 | Msa1346010:CDS | 40.0% | |
| ! | CTGAACTTCAGTCTAAGATG+CGG | - | tig0008063:19476-19495 | Msa1346010:CDS | 40.0% |
| AGACAGAAACAACAAGCCAT+TGG | - | tig0008063:19519-19538 | Msa1346010:CDS | 40.0% | |
| GACAGAAACAACAAGCCATT+GGG | - | tig0008063:19520-19539 | Msa1346010:CDS | 40.0% | |
| CTCAACTTTCTCCAGAAGAT+AGG | - | tig0008063:19545-19564 | Msa1346010:intron | 40.0% | |
| TAGAGGAGGTAATTTCAAGG+AGG | - | tig0008063:19575-19594 | Msa1346010:intron | 40.0% | |
| !! | TCCTCACTTTTGCTAATTCC+CGG | + | tig0008063:19607-19626 | Msa1346010:intergenic | 40.0% |
| TTCACCTGATAAGGAGTTCT+TGG | - | tig0008063:19687-19706 | Msa1346010:CDS | 40.0% | |
| TCACCTGATAAGGAGTTCTT+GGG | - | tig0008063:19688-19707 | Msa1346010:CDS | 40.0% | |
| AACGTTATAGTTGTGGTGGT+TGG | + | tig0008063:19728-19747 | Msa1346010:intergenic | 40.0% | |
| CCAAAACGTTATAGTTGTGG+TGG | + | tig0008063:19732-19751 | Msa1346010:intergenic | 40.0% | |
| ! | CCACCACAACTATAACGTTT+TGG | - | tig0008063:19729-19748 | Msa1346010:CDS | 40.0% |
| ! | CCACCACTGGTGTTTAACTT+TGG | + | tig0008063:15824-15843 | Msa1346010:intergenic | 45.0% |
| CCAAAGTTAAACACCAGTGG+TGG | - | tig0008063:15821-15840 | Msa1346010:three_prime_UTR | 45.0% | |
| CATTCAGTTCCTCAAGAAGG+AGG | - | tig0008063:15955-15974 | Msa1346010:CDS | 45.0% | |
| CTGAGATGGACAAAAGGTTC+TGG | - | tig0008063:16041-16060 | Msa1346010:CDS | 45.0% | |
| ! | GATGTAGGTTGTGCCATTGT+GGG | + | tig0008063:16206-16225 | Msa1346010:intergenic | 45.0% |
| AGATGCCGAAAAGACAATGC+AGG | - | tig0008063:16411-16430 | Msa1346010:intron | 45.0% | |
| CTCATAGCAAACCAGAAGCA+GGG | + | tig0008063:16672-16691 | Msa1346010:intergenic | 45.0% | |
| ACTCATAGCAAACCAGAAGC+AGG | + | tig0008063:16673-16692 | Msa1346010:intergenic | 45.0% | |
| CTGTCTTACAGTCTATCAGC+AGG | - | tig0008063:17164-17183 | Msa1346010:intron | 45.0% | |
| TCATTCAGGTAGGGGAACAT+GGG | + | tig0008063:17417-17436 | Msa1346010:intergenic | 45.0% | |
| TTCATTCAGGTAGGGGAACA+TGG | + | tig0008063:17418-17437 | Msa1346010:intergenic | 45.0% | |
| ! | CCCCTACCTGAATGAAGTTT+TGG | - | tig0008063:17422-17441 | Msa1346010:intron | 45.0% |
| GTGTAGCCGTGTATATCTTG+CGG | - | tig0008063:17451-17470 | Msa1346010:intron | 45.0% | |
| CAAGCAATTCGTGAGTTCCT+TGG | - | tig0008063:17596-17615 | Msa1346010:intron | 45.0% | |
| CGTGAGTTCCTTGGAAATCA+TGG | - | tig0008063:17605-17624 | Msa1346010:intron | 45.0% | |
| ATTGCGTAGAACTCGTTGGA+AGG | - | tig0008063:18321-18340 | Msa1346010:intron | 45.0% | |
| AATGTGTCCCTCGTATTTGG+AGG | + | tig0008063:18618-18637 | Msa1346010:intergenic | 45.0% | |
| !! | TTAAGAGTGCCCTTCCATCT+CGG | - | tig0008063:18661-18680 | Msa1346010:intron | 45.0% |
| !! | GAAATGGATTGCAACCGAGA+TGG | + | tig0008063:18678-18697 | Msa1346010:intergenic | 45.0% |
| AGGGAGGTTATACCTCTTTC+TGG | + | tig0008063:18704-18723 | Msa1346010:intergenic | 45.0% | |
| ! | AGGTATAACCTCCCTTTTCC+TGG | - | tig0008063:18709-18728 | Msa1346010:intron | 45.0% |
| TGCAAGACAAATGGATGTCC+AGG | + | tig0008063:18730-18749 | Msa1346010:intergenic | 45.0% | |
| ATAACGCGTGAGCAATTGCA+GGG | + | tig0008063:19050-19069 | Msa1346010:intergenic | 45.0% | |
| AATAACGCGTGAGCAATTGC+AGG | + | tig0008063:19051-19070 | Msa1346010:intergenic | 45.0% | |
| !! | CTTTGGATGGGTTGGTGAAT+GGG | - | tig0008063:19109-19128 | Msa1346010:intron | 45.0% |
| TTGGTGAATGGGCAAACACA+AGG | - | tig0008063:19120-19139 | Msa1346010:intron | 45.0% | |
| ! | GCGAATTGGGTTGCTTTCTT+TGG | + | tig0008063:19302-19321 | Msa1346010:intergenic | 45.0% |
| ! | AAAGTGTCTGGAGGCGAATT+GGG | + | tig0008063:19315-19334 | Msa1346010:intergenic | 45.0% |
| ! | TAAAGTGTCTGGAGGCGAAT+TGG | + | tig0008063:19316-19335 | Msa1346010:intergenic | 45.0% |
| ! | TATCGGCGTAGTAAAGTGTC+TGG | + | tig0008063:19327-19346 | Msa1346010:intergenic | 45.0% |
| TGAAGTTCAGGTCTCTTGGA+AGG | + | tig0008063:19466-19485 | Msa1346010:intergenic | 45.0% | |
| AGACTGAAGTTCAGGTCTCT+TGG | + | tig0008063:19470-19489 | Msa1346010:intergenic | 45.0% | |
| CGCATCTTAGACTGAAGTTC+AGG | + | tig0008063:19478-19497 | Msa1346010:intergenic | 45.0% | |
| GGAGAAAGTTGAGTTCCCAA+TGG | + | tig0008063:19538-19557 | Msa1346010:intergenic | 45.0% | |
| AGGAGGTAATTTCAAGGAGG+AGG | - | tig0008063:19578-19597 | Msa1346010:intron | 45.0% | |
| !! | CCTCACTTTTGCTAATTCCC+GGG | + | tig0008063:19606-19625 | Msa1346010:intergenic | 45.0% |
| !!! | CAGCACTTTTGGTCTTGAGA+GGG | + | tig0008063:19663-19682 | Msa1346010:intergenic | 45.0% |
| !! | CTCTCAAGACCAAAAGTGCT+GGG | - | tig0008063:19662-19681 | Msa1346010:CDS | 45.0% |
| GTACCCAAGAACTCCTTATC+AGG | + | tig0008063:19694-19713 | Msa1346010:intergenic | 45.0% | |
| GGGTAAAGCTAGCTATAGGG+CGG | - | tig0008063:15766-15785 | Msa1346010:three_prime_UTR | 50.0% | |
| TAAAGCTAGCTATAGGGCGG+TGG | - | tig0008063:15769-15788 | Msa1346010:three_prime_UTR | 50.0% | |
| TCTCTGGCAAGCTTTCCAGA+GGG | - | tig0008063:15849-15868 | Msa1346010:three_prime_UTR | 50.0% | |
| ! | CGATGTAGGTTGTGCCATTG+TGG | + | tig0008063:16207-16226 | Msa1346010:intergenic | 50.0% |
| CTGCAGCCGCAAGATATACA+CGG | + | tig0008063:17460-17479 | Msa1346010:intergenic | 50.0% | |
| AGAAGGAATGTGGGCAACAG+AGG | + | tig0008063:17755-17774 | Msa1346010:intergenic | 50.0% | |
| ! | TGTGGGTTAATGGCAGGTAC+TGG | - | tig0008063:18395-18414 | Msa1346010:CDS | 50.0% |
| ! | CCAGCTTCACCTAGTCTTTG+AGG | + | tig0008063:18443-18462 | Msa1346010:intergenic | 50.0% |
| CCTCAAAGACTAGGTGAAGC+TGG | - | tig0008063:18440-18459 | Msa1346010:intron | 50.0% | |
| TATTTGGAGGAAGGGAGGCT+GGG | + | tig0008063:18605-18624 | Msa1346010:intergenic | 50.0% | |
| CTCCCTTCCTCCAAATACGA+GGG | - | tig0008063:18608-18627 | Msa1346010:intron | 50.0% | |
| GTCCCTCGTATTTGGAGGAA+GGG | + | tig0008063:18613-18632 | Msa1346010:intergenic | 50.0% | |
| TGTCCCTCGTATTTGGAGGA+AGG | + | tig0008063:18614-18633 | Msa1346010:intergenic | 50.0% | |
| GGATTGCAACCGAGATGGAA+GGG | + | tig0008063:18673-18692 | Msa1346010:intergenic | 50.0% | |
| TGGATTGCAACCGAGATGGA+AGG | + | tig0008063:18674-18693 | Msa1346010:intergenic | 50.0% | |
| ATGGATGTCCAGGAAAAGGG+AGG | + | tig0008063:18720-18739 | Msa1346010:intergenic | 50.0% | |
| TCAGTGGCTCGTACCATTTG+CGG | - | tig0008063:18905-18924 | Msa1346010:intron | 50.0% | |
| TACGAAAACAAGGCCAGCAC+GGG | + | tig0008063:19012-19031 | Msa1346010:intergenic | 50.0% | |
| CTACGAAAACAAGGCCAGCA+CGG | + | tig0008063:19013-19032 | Msa1346010:intergenic | 50.0% | |
| AACAGGGCTCATCAAGGCTT+TGG | - | tig0008063:19092-19111 | Msa1346010:intron | 50.0% | |
| !! | GGCTCATCAAGGCTTTGGAT+GGG | - | tig0008063:19097-19116 | Msa1346010:intron | 50.0% |
| !! | CATCAAGGCTTTGGATGGGT+TGG | - | tig0008063:19101-19120 | Msa1346010:intron | 50.0% |
| !! | GCTTTGGATGGGTTGGTGAA+TGG | - | tig0008063:19108-19127 | Msa1346010:intron | 50.0% |
| GATCCAGACAAAATGCCTCG+AGG | - | tig0008063:19413-19432 | Msa1346010:intron | 50.0% | |
| ACAAAATGCCTCGAGGCCAA+TGG | - | tig0008063:19420-19439 | Msa1346010:intron | 50.0% | |
| AGTTCAGGTCTCTTGGAAGG+AGG | + | tig0008063:19463-19482 | Msa1346010:intergenic | 50.0% | |
| AATTTCAAGGAGGAGGAGCC+CGG | - | tig0008063:19585-19604 | Msa1346010:intron | 50.0% | |
| CCCGGGAATTAGCAAAAGTG+AGG | - | tig0008063:19603-19622 | Msa1346010:intron | 50.0% | |
| CTGCCAAGAAAACTCATGCC+AGG | - | tig0008063:19635-19654 | Msa1346010:CDS | 50.0% | |
| ! | GTGCCTGGCATGAGTTTTCT+TGG | + | tig0008063:19641-19660 | Msa1346010:intergenic | 50.0% |
| !!! | CCAGCACTTTTGGTCTTGAG+AGG | + | tig0008063:19664-19683 | Msa1346010:intergenic | 50.0% |
| ! | CCTCTCAAGACCAAAAGTGC+TGG | - | tig0008063:19661-19680 | Msa1346010:CDS | 50.0% |
| ! | AGGTGAACTCCCAGCACTTT+TGG | + | tig0008063:19674-19693 | Msa1346010:intergenic | 50.0% |
| TGCTGGGAGTTCACCTGATA+AGG | - | tig0008063:19678-19697 | Msa1346010:CDS | 50.0% | |
| !! | ACCAGTGGTGGGTTTGTCTC+TGG | - | tig0008063:15833-15852 | Msa1346010:three_prime_UTR | 55.0% |
| GTCTCTGGCAAGCTTTCCAG+AGG | - | tig0008063:15848-15867 | Msa1346010:three_prime_UTR | 55.0% | |
| CAGGTAGGGGAACATGGGAA+GGG | + | tig0008063:17412-17431 | Msa1346010:intergenic | 55.0% | |
| TCAGGTAGGGGAACATGGGA+AGG | + | tig0008063:17413-17432 | Msa1346010:intergenic | 55.0% | |
| GGAATGTGGGCAACAGAGGT+AGG | + | tig0008063:17751-17770 | Msa1346010:intergenic | 55.0% | |
| GTATTTGGAGGAAGGGAGGC+TGG | + | tig0008063:18606-18625 | Msa1346010:intergenic | 55.0% | |
| CCTCGTATTTGGAGGAAGGG+AGG | + | tig0008063:18610-18629 | Msa1346010:intergenic | 55.0% | |
| CCTCCCTTCCTCCAAATACG+AGG | - | tig0008063:18607-18626 | Msa1346010:intron | 55.0% | |
| ACGAAAACAAGGCCAGCACG+GGG | + | tig0008063:19011-19030 | Msa1346010:intergenic | 55.0% | |
| !!! | GCTGGCCTTGTTTTCGTAGC+TGG | - | tig0008063:19014-19033 | Msa1346010:intron | 55.0% |
| !! | GGGCTCATCAAGGCTTTGGA+TGG | - | tig0008063:19096-19115 | Msa1346010:intron | 55.0% |
| ! | CGGCGTAGTAAAGTGTCTGG+AGG | + | tig0008063:19324-19343 | Msa1346010:intergenic | 55.0% |
| !! | TGGCCTCGAGGCATTTTGTC+TGG | + | tig0008063:19419-19438 | Msa1346010:intergenic | 55.0% |
| TTGGAAGGAGGAGACCGTGT+GGG | + | tig0008063:19451-19470 | Msa1346010:intergenic | 55.0% | |
| ATTTCAAGGAGGAGGAGCCC+GGG | - | tig0008063:19586-19605 | Msa1346010:intron | 55.0% | |
| !! | TTTGGTCTTGAGAGGGTGCC+TGG | + | tig0008063:19656-19675 | Msa1346010:intergenic | 55.0% |
| GCCAGAGACAAACCCACCAC+TGG | + | tig0008063:15837-15856 | Msa1346010:intergenic | 60.0% | |
| GGCCAATGGCAATGCCCACA+CGG | - | tig0008063:19434-19453 | Msa1346010:intron | 60.0% | |
| ! | GACCGTGTGGGCATTGCCAT+TGG | + | tig0008063:19439-19458 | Msa1346010:intergenic | 60.0% |
| CTTGGAAGGAGGAGACCGTG+TGG | + | tig0008063:19452-19471 | Msa1346010:intergenic | 60.0% | |
| GTGGTGGTTGGCGATGAGTG+TGG | + | tig0008063:19716-19735 | Msa1346010:intergenic | 60.0% | |
| ! | GGGCATTGCCATTGGCCTCG+AGG | + | tig0008063:19431-19450 | Msa1346010:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008063 | gene | 15739 | 19947 | 15739 | ID=Msa1346010;Name=Msa1346010 |
| tig0008063 | mRNA | 15739 | 19947 | 15739 | ID=Msa1346010-mRNA-1;Parent=Msa1346010;Name=Msa1346010-mRNA-1;_AED=0.14;_eAED=0.14;_QI=79|1|1|1|1|1|11|170|507 |
| tig0008063 | exon | 15739 | 16410 | 15739 | ID=Msa1346010-mRNA-1:exon:5297;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 16545 | 16589 | 16545 | ID=Msa1346010-mRNA-1:exon:5296;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 16746 | 16822 | 16746 | ID=Msa1346010-mRNA-1:exon:5295;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 16976 | 17092 | 16976 | ID=Msa1346010-mRNA-1:exon:5294;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 17178 | 17275 | 17178 | ID=Msa1346010-mRNA-1:exon:5293;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 18060 | 18129 | 18060 | ID=Msa1346010-mRNA-1:exon:5292;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 18332 | 18429 | 18332 | ID=Msa1346010-mRNA-1:exon:5291;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 18816 | 18909 | 18816 | ID=Msa1346010-mRNA-1:exon:5290;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 19224 | 19314 | 19224 | ID=Msa1346010-mRNA-1:exon:5289;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 19448 | 19540 | 19448 | ID=Msa1346010-mRNA-1:exon:5288;Parent=Msa1346010-mRNA-1 |
| tig0008063 | exon | 19630 | 19947 | 19630 | ID=Msa1346010-mRNA-1:exon:5287;Parent=Msa1346010-mRNA-1 |
| tig0008063 | five_prime_UTR | 19869 | 19947 | 19869 | ID=Msa1346010-mRNA-1:five_prime_utr;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 19630 | 19868 | 19630 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 19448 | 19540 | 19448 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 19224 | 19314 | 19224 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 18816 | 18909 | 18816 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 18332 | 18429 | 18332 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 18060 | 18129 | 18060 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 17178 | 17275 | 17178 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 16976 | 17092 | 16976 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 16746 | 16822 | 16746 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 16545 | 16589 | 16545 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | CDS | 15909 | 16410 | 15909 | ID=Msa1346010-mRNA-1:cds;Parent=Msa1346010-mRNA-1 |
| tig0008063 | three_prime_UTR | 15739 | 15908 | 15739 | ID=Msa1346010-mRNA-1:three_prime_utr;Parent=Msa1346010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
