Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396160 | XP_013469370.1 | 96.050 | 481 | 10 | 1 | 1 | 472 | 1 | 481 | 0.0 | 928 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396160 | sp|F4HW02|GAT1_ARATH | 51.810 | 442 | 202 | 2 | 41 | 471 | 9 | 450 | 6.45e-164 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396160 | A0A072VPU6 | 96.050 | 481 | 10 | 1 | 1 | 472 | 1 | 481 | 0.0 | 928 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026420 | Msa1396160 | 0.825612 | 4.263983e-54 | -8.615850e-47 |
| Msa0035790 | Msa1396160 | 0.997196 | 1.972853e-238 | -8.615850e-47 |
| Msa0046680 | Msa1396160 | 0.836203 | 1.074056e-56 | -8.615850e-47 |
| Msa0051480 | Msa1396160 | 0.854011 | 1.634596e-61 | -8.615850e-47 |
| Msa0051620 | Msa1396160 | 0.839739 | 1.323142e-57 | -8.615850e-47 |
| Msa0051730 | Msa1396160 | 0.829602 | 4.696706e-55 | -8.615850e-47 |
| Msa0076640 | Msa1396160 | 0.801965 | 7.020474e-49 | -8.615850e-47 |
| Msa0083890 | Msa1396160 | 0.965253 | 2.296057e-124 | -8.615850e-47 |
| Msa1346010 | Msa1396160 | 0.822150 | 2.763604e-53 | -8.615850e-47 |
| Msa1349830 | Msa1396160 | 0.809170 | 2.160193e-50 | -8.615850e-47 |
| Msa1377050 | Msa1396160 | 0.835288 | 1.830764e-56 | -8.615850e-47 |
| Msa1383790 | Msa1396160 | 0.828477 | 8.796889e-55 | -8.615850e-47 |
| Msa1396160 | Msa1398120 | 0.802925 | 4.451283e-49 | -8.615850e-47 |
| Msa1396160 | Msa1449470 | 0.800699 | 1.275321e-48 | -8.615850e-47 |
| Msa1396160 | Msa1453600 | 0.886767 | 2.567049e-72 | -8.615850e-47 |
| Msa0744550 | Msa1396160 | 0.816459 | 5.471518e-52 | -8.615850e-47 |
| Msa0744560 | Msa1396160 | 0.837239 | 5.845668e-57 | -8.615850e-47 |
| Msa0746340 | Msa1396160 | 0.805172 | 1.517568e-49 | -8.615850e-47 |
| Msa0826370 | Msa1396160 | 0.815471 | 9.089310e-52 | -8.615850e-47 |
| Msa0826380 | Msa1396160 | 0.811072 | 8.405914e-51 | -8.615850e-47 |
| Msa0826450 | Msa1396160 | 0.811897 | 5.562754e-51 | -8.615850e-47 |
| Msa0146090 | Msa1396160 | 0.826136 | 3.201597e-54 | -8.615850e-47 |
| Msa0146200 | Msa1396160 | 0.854921 | 8.920500e-62 | -8.615850e-47 |
| Msa0162680 | Msa1396160 | 0.800934 | 1.141667e-48 | -8.615850e-47 |
| Msa1256600 | Msa1396160 | 0.805501 | 1.295009e-49 | -8.615850e-47 |
| Msa1309050 | Msa1396160 | 0.812235 | 4.694792e-51 | -8.615850e-47 |
| Msa1322180 | Msa1396160 | 0.810470 | 1.134429e-50 | -8.615850e-47 |
| Msa1333700 | Msa1396160 | 0.810200 | 1.297421e-50 | -8.615850e-47 |
| Msa0385320 | Msa1396160 | 0.853737 | 1.960994e-61 | -8.615850e-47 |
| Msa0393100 | Msa1396160 | 0.813258 | 2.803345e-51 | -8.615850e-47 |
| Msa0402800 | Msa1396160 | 0.834498 | 2.895724e-56 | -8.615850e-47 |
| Msa0438070 | Msa1396160 | 0.856766 | 2.577120e-62 | -8.615850e-47 |
| Msa0449620 | Msa1396160 | 0.838876 | 2.216624e-57 | -8.615850e-47 |
| Msa0466850 | Msa1396160 | 0.836170 | 1.094828e-56 | -8.615850e-47 |
| Msa0480540 | Msa1396160 | 0.812692 | 3.729955e-51 | -8.615850e-47 |
| Msa0480550 | Msa1396160 | 0.835647 | 1.485862e-56 | -8.615850e-47 |
| Msa0481740 | Msa1396160 | 0.828910 | 6.911604e-55 | -8.615850e-47 |
| Msa0481770 | Msa1396160 | 0.896874 | 2.424456e-76 | -8.615850e-47 |
| Msa1067800 | Msa1396160 | 0.812111 | 4.997818e-51 | -8.615850e-47 |
| Msa1080650 | Msa1396160 | 0.834577 | 2.766276e-56 | -8.615850e-47 |
| Msa1126440 | Msa1396160 | 0.828696 | 7.787207e-55 | -8.615850e-47 |
| Msa1183750 | Msa1396160 | 0.825696 | 4.071519e-54 | -8.615850e-47 |
| Msa1224510 | Msa1396160 | 0.806079 | 9.789794e-50 | -8.615850e-47 |
| Msa0497860 | Msa1396160 | 0.833324 | 5.692823e-56 | -8.615850e-47 |
| Msa0513670 | Msa1396160 | 0.837005 | 6.708648e-57 | -8.615850e-47 |
| Msa0523080 | Msa1396160 | 0.819905 | 9.084419e-53 | -8.615850e-47 |
| Msa0568110 | Msa1396160 | 0.829697 | 4.452875e-55 | -8.615850e-47 |
| Msa0570460 | Msa1396160 | 0.836219 | 1.063748e-56 | -8.615850e-47 |
| Msa0572370 | Msa1396160 | -0.829560 | 4.807289e-55 | -8.615850e-47 |
| Msa0865810 | Msa1396160 | 0.841491 | 4.602706e-58 | -8.615850e-47 |
| Msa0865820 | Msa1396160 | 0.804910 | 1.722122e-49 | -8.615850e-47 |
| Msa0865830 | Msa1396160 | 0.808765 | 2.636544e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396160 | MtrunA17_Chr1g0198081 | 96.050 | 481 | 10 | 1 | 1 | 472 | 1 | 481 | 0.0 | 928 |
| Msa1396160 | MtrunA17_Chr4g0027241 | 57.143 | 462 | 188 | 2 | 19 | 471 | 1 | 461 | 0.0 | 551 |
| Msa1396160 | MtrunA17_Chr8g0387941 | 47.178 | 443 | 221 | 5 | 41 | 472 | 10 | 450 | 2.24e-135 | 398 |
| Msa1396160 | MtrunA17_Chr1g0184721 | 34.272 | 426 | 255 | 8 | 61 | 471 | 24 | 439 | 4.87e-73 | 237 |
| Msa1396160 | MtrunA17_Chr4g0027261 | 55.440 | 193 | 79 | 1 | 279 | 471 | 1 | 186 | 1.69e-67 | 214 |
| Msa1396160 | MtrunA17_Chr6g0458931 | 29.530 | 447 | 285 | 10 | 40 | 470 | 23 | 455 | 1.34e-55 | 191 |
| Msa1396160 | MtrunA17_Chr2g0331721 | 29.053 | 475 | 300 | 13 | 19 | 470 | 1 | 461 | 6.89e-53 | 184 |
| Msa1396160 | MtrunA17_Chr5g0436281 | 31.980 | 394 | 241 | 8 | 90 | 471 | 4 | 382 | 1.51e-48 | 171 |
| Msa1396160 | MtrunA17_Chr8g0376991 | 30.070 | 429 | 264 | 12 | 61 | 470 | 25 | 436 | 1.73e-48 | 172 |
| Msa1396160 | MtrunA17_Chr4g0058161 | 29.424 | 469 | 290 | 13 | 20 | 471 | 5 | 449 | 4.88e-46 | 166 |
| Msa1396160 | MtrunA17_Chr4g0057851 | 28.230 | 418 | 270 | 10 | 66 | 467 | 17 | 420 | 1.33e-45 | 164 |
| Msa1396160 | MtrunA17_Chr6g0459021 | 28.791 | 455 | 290 | 11 | 32 | 470 | 11 | 447 | 9.18e-43 | 157 |
| Msa1396160 | MtrunA17_Chr6g0459031 | 30.047 | 426 | 269 | 9 | 61 | 470 | 16 | 428 | 3.87e-42 | 155 |
| Msa1396160 | MtrunA17_Chr7g0230011 | 29.060 | 468 | 291 | 12 | 19 | 470 | 1 | 443 | 1.20e-41 | 154 |
| Msa1396160 | MtrunA17_Chr6g0458921 | 29.577 | 426 | 271 | 9 | 61 | 470 | 16 | 428 | 2.39e-41 | 152 |
| Msa1396160 | MtrunA17_Chr3g0122921 | 26.667 | 465 | 283 | 14 | 25 | 470 | 3 | 428 | 1.64e-40 | 150 |
| Msa1396160 | MtrunA17_Chr1g0198541 | 29.837 | 429 | 265 | 12 | 61 | 470 | 26 | 437 | 4.43e-39 | 146 |
| Msa1396160 | MtrunA17_Chr1g0198531 | 28.731 | 449 | 280 | 13 | 41 | 470 | 10 | 437 | 6.17e-39 | 146 |
| Msa1396160 | MtrunA17_Chr3g0077651 | 29.132 | 484 | 291 | 18 | 11 | 470 | 14 | 469 | 7.55e-39 | 146 |
| Msa1396160 | MtrunA17_Chr1g0206871 | 27.233 | 459 | 280 | 11 | 62 | 472 | 18 | 470 | 1.36e-38 | 146 |
| Msa1396160 | MtrunA17_Chr5g0422741 | 28.904 | 429 | 269 | 12 | 61 | 470 | 28 | 439 | 2.87e-37 | 142 |
| Msa1396160 | MtrunA17_Chr6g0459001 | 28.602 | 465 | 265 | 12 | 61 | 470 | 24 | 476 | 7.76e-37 | 141 |
| Msa1396160 | MtrunA17_Chr3g0112971 | 30.000 | 380 | 237 | 9 | 105 | 471 | 72 | 435 | 2.65e-36 | 139 |
| Msa1396160 | MtrunA17_Chr6g0459011 | 29.238 | 407 | 258 | 10 | 75 | 465 | 1 | 393 | 4.19e-36 | 137 |
| Msa1396160 | MtrunA17_Chr3g0143701 | 27.830 | 424 | 267 | 13 | 61 | 456 | 86 | 498 | 1.00e-35 | 139 |
| Msa1396160 | MtrunA17_Chr2g0328081 | 27.465 | 426 | 280 | 9 | 61 | 470 | 16 | 428 | 3.78e-34 | 132 |
| Msa1396160 | MtrunA17_Chr3g0125081 | 26.096 | 479 | 306 | 15 | 35 | 470 | 3 | 476 | 2.25e-31 | 125 |
| Msa1396160 | MtrunA17_Chr1g0159761 | 26.573 | 429 | 269 | 14 | 32 | 421 | 2 | 423 | 4.98e-30 | 122 |
| Msa1396160 | MtrunA17_Chr3g0125091 | 25.361 | 485 | 303 | 17 | 35 | 470 | 3 | 477 | 2.38e-29 | 120 |
| Msa1396160 | MtrunA17_Chr3g0125101 | 25.799 | 438 | 283 | 11 | 70 | 470 | 45 | 477 | 2.38e-29 | 120 |
| Msa1396160 | MtrunA17_Chr4g0037201 | 25.567 | 485 | 296 | 17 | 39 | 472 | 41 | 511 | 5.63e-29 | 119 |
| Msa1396160 | MtrunA17_Chr3g0140761 | 23.992 | 471 | 301 | 13 | 43 | 469 | 21 | 478 | 9.53e-29 | 118 |
| Msa1396160 | MtrunA17_Chr1g0146411 | 26.316 | 399 | 255 | 12 | 70 | 436 | 44 | 435 | 1.07e-28 | 118 |
| Msa1396160 | MtrunA17_Chr3g0130641 | 25.561 | 446 | 276 | 16 | 70 | 472 | 44 | 476 | 1.28e-28 | 118 |
| Msa1396160 | MtrunA17_Chr3g0103231 | 25.954 | 393 | 250 | 11 | 70 | 426 | 34 | 421 | 1.01e-26 | 112 |
| Msa1396160 | MtrunA17_Chr3g0130651 | 26.718 | 393 | 234 | 14 | 70 | 421 | 37 | 416 | 5.70e-26 | 110 |
| Msa1396160 | MtrunA17_Chr1g0146491 | 24.503 | 453 | 287 | 16 | 62 | 469 | 26 | 468 | 6.98e-26 | 110 |
| Msa1396160 | MtrunA17_Chr3g0103221 | 24.419 | 430 | 282 | 13 | 70 | 462 | 41 | 464 | 7.07e-26 | 110 |
| Msa1396160 | MtrunA17_Chr5g0406331 | 28.139 | 462 | 261 | 19 | 51 | 470 | 78 | 510 | 1.37e-25 | 109 |
| Msa1396160 | MtrunA17_Chr8g0384661 | 24.561 | 513 | 326 | 19 | 1 | 472 | 1 | 493 | 1.41e-24 | 106 |
| Msa1396160 | MtrunA17_Chr3g0103211 | 26.718 | 393 | 247 | 12 | 70 | 426 | 34 | 421 | 1.46e-23 | 103 |
| Msa1396160 | MtrunA17_Chr3g0140531 | 23.789 | 475 | 315 | 15 | 33 | 469 | 2 | 467 | 2.56e-22 | 99.4 |
| Msa1396160 | MtrunA17_Chr5g0406351 | 25.144 | 521 | 309 | 21 | 4 | 470 | 39 | 532 | 5.51e-22 | 99.0 |
| Msa1396160 | MtrunA17_Chr5g0447221 | 25.823 | 395 | 248 | 15 | 70 | 426 | 40 | 427 | 1.68e-21 | 97.1 |
| Msa1396160 | MtrunA17_Chr4g0038711 | 24.171 | 422 | 277 | 13 | 69 | 459 | 80 | 489 | 2.28e-21 | 96.7 |
| Msa1396160 | MtrunA17_Chr1g0206851 | 27.132 | 387 | 219 | 12 | 124 | 472 | 19 | 380 | 6.62e-21 | 94.4 |
| Msa1396160 | MtrunA17_Chr3g0103271 | 25.897 | 390 | 245 | 16 | 70 | 421 | 38 | 421 | 6.95e-20 | 92.0 |
| Msa1396160 | MtrunA17_Chr1g0146391 | 24.439 | 446 | 278 | 19 | 70 | 470 | 23 | 454 | 2.46e-19 | 90.5 |
| Msa1396160 | MtrunA17_Chr2g0281341 | 27.645 | 293 | 176 | 10 | 40 | 307 | 77 | 358 | 3.02e-19 | 90.5 |
| Msa1396160 | MtrunA17_Chr2g0293331 | 23.991 | 446 | 280 | 16 | 70 | 470 | 23 | 454 | 1.16e-18 | 88.2 |
| Msa1396160 | MtrunA17_Chr1g0206821 | 26.891 | 238 | 151 | 8 | 62 | 276 | 25 | 262 | 3.12e-17 | 84.3 |
| Msa1396160 | MtrunA17_Chr1g0206821 | 27.803 | 223 | 139 | 4 | 267 | 472 | 313 | 530 | 8.21e-12 | 67.4 |
| Msa1396160 | MtrunA17_Chr1g0146331 | 24.276 | 449 | 276 | 18 | 70 | 470 | 31 | 463 | 4.36e-17 | 83.6 |
| Msa1396160 | MtrunA17_Chr1g0206831 | 25.532 | 329 | 207 | 10 | 168 | 468 | 21 | 339 | 1.18e-16 | 81.3 |
| Msa1396160 | MtrunA17_Chr3g0140541 | 23.134 | 402 | 267 | 9 | 70 | 435 | 36 | 431 | 4.46e-16 | 80.5 |
| Msa1396160 | MtrunA17_Chr4g0037361 | 23.779 | 471 | 297 | 14 | 37 | 471 | 15 | 459 | 7.94e-15 | 76.6 |
| Msa1396160 | MtrunA17_Chr2g0281021 | 41.096 | 73 | 33 | 2 | 403 | 470 | 1 | 68 | 2.52e-13 | 65.1 |
| Msa1396160 | MtrunA17_Chr5g0447231 | 23.724 | 392 | 251 | 14 | 70 | 421 | 36 | 419 | 2.68e-13 | 71.6 |
| Msa1396160 | MtrunA17_Chr5g0402151 | 24.621 | 264 | 157 | 9 | 70 | 317 | 11 | 248 | 1.17e-12 | 68.2 |
| Msa1396160 | MtrunA17_Chr7g0241841 | 23.256 | 430 | 283 | 13 | 17 | 428 | 4 | 404 | 2.62e-12 | 68.9 |
| Msa1396160 | MtrunA17_Chr4g0006031 | 22.925 | 506 | 307 | 19 | 2 | 471 | 5 | 463 | 2.40e-11 | 65.9 |
| Msa1396160 | MtrunA17_Chr5g0436811 | 22.444 | 450 | 271 | 16 | 63 | 471 | 50 | 462 | 6.46e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396160 | AT1G08230.2 | 51.810 | 442 | 202 | 2 | 41 | 471 | 9 | 450 | 6.56e-165 | 473 |
| Msa1396160 | AT5G41800.1 | 49.315 | 438 | 210 | 4 | 46 | 472 | 13 | 449 | 4.62e-136 | 400 |
| Msa1396160 | AT1G08230.3 | 51.327 | 339 | 163 | 1 | 135 | 471 | 12 | 350 | 5.13e-124 | 365 |
| Msa1396160 | AT1G08230.4 | 51.672 | 329 | 157 | 1 | 145 | 471 | 3 | 331 | 1.10e-121 | 358 |
| Msa1396160 | AT1G08230.6 | 51.672 | 329 | 157 | 1 | 145 | 471 | 3 | 331 | 1.10e-121 | 358 |
| Msa1396160 | AT1G08230.5 | 51.672 | 329 | 157 | 1 | 145 | 471 | 3 | 331 | 1.10e-121 | 358 |
| Msa1396160 | AT5G40780.1 | 29.741 | 464 | 290 | 11 | 23 | 470 | 3 | 446 | 8.62e-55 | 189 |
| Msa1396160 | AT3G55740.1 | 31.221 | 426 | 265 | 9 | 59 | 471 | 28 | 438 | 7.75e-53 | 184 |
| Msa1396160 | AT2G39890.2 | 30.445 | 427 | 267 | 10 | 59 | 471 | 31 | 441 | 8.05e-51 | 179 |
| Msa1396160 | AT2G39890.1 | 30.445 | 427 | 267 | 10 | 59 | 471 | 31 | 441 | 8.05e-51 | 179 |
| Msa1396160 | AT5G40780.3 | 31.796 | 412 | 251 | 10 | 75 | 470 | 1 | 398 | 8.62e-51 | 177 |
| Msa1396160 | AT5G40780.2 | 31.796 | 412 | 251 | 10 | 75 | 470 | 1 | 398 | 8.62e-51 | 177 |
| Msa1396160 | AT3G55740.2 | 31.726 | 394 | 242 | 8 | 90 | 471 | 4 | 382 | 1.39e-50 | 177 |
| Msa1396160 | AT3G55740.3 | 31.726 | 394 | 242 | 8 | 90 | 471 | 4 | 382 | 1.39e-50 | 177 |
| Msa1396160 | AT2G36590.1 | 32.553 | 427 | 258 | 10 | 59 | 471 | 25 | 435 | 1.99e-50 | 177 |
| Msa1396160 | AT1G48640.1 | 29.505 | 444 | 283 | 11 | 43 | 470 | 24 | 453 | 9.66e-50 | 176 |
| Msa1396160 | AT2G39890.3 | 30.886 | 395 | 244 | 9 | 90 | 471 | 4 | 382 | 1.82e-48 | 171 |
| Msa1396160 | AT1G24400.1 | 28.875 | 471 | 286 | 13 | 19 | 470 | 1 | 441 | 2.63e-45 | 164 |
| Msa1396160 | AT1G61270.1 | 29.371 | 429 | 268 | 11 | 49 | 456 | 23 | 437 | 6.90e-44 | 160 |
| Msa1396160 | AT1G71680.1 | 29.221 | 462 | 290 | 13 | 30 | 470 | 3 | 448 | 1.50e-42 | 157 |
| Msa1396160 | AT1G67640.1 | 29.075 | 454 | 283 | 11 | 42 | 470 | 2 | 441 | 5.40e-39 | 147 |
| Msa1396160 | AT3G01760.1 | 27.578 | 417 | 268 | 10 | 61 | 456 | 33 | 436 | 8.42e-39 | 146 |
| Msa1396160 | AT1G25530.1 | 28.904 | 429 | 267 | 12 | 62 | 470 | 30 | 440 | 1.23e-34 | 135 |
| Msa1396160 | AT1G71680.2 | 28.242 | 347 | 221 | 9 | 30 | 358 | 3 | 339 | 1.66e-34 | 133 |
| Msa1396160 | AT2G36590.2 | 32.877 | 292 | 175 | 6 | 59 | 340 | 25 | 305 | 3.59e-34 | 131 |
| Msa1396160 | AT5G09220.1 | 26.281 | 449 | 273 | 15 | 70 | 472 | 56 | 492 | 7.03e-32 | 128 |
| Msa1396160 | AT1G10010.1 | 26.386 | 451 | 284 | 13 | 62 | 471 | 30 | 473 | 6.37e-30 | 122 |
| Msa1396160 | AT1G10010.2 | 26.386 | 451 | 284 | 13 | 62 | 471 | 31 | 474 | 7.16e-30 | 122 |
| Msa1396160 | AT5G63850.1 | 25.778 | 450 | 274 | 16 | 70 | 472 | 29 | 465 | 9.09e-30 | 121 |
| Msa1396160 | AT1G77380.1 | 25.172 | 437 | 286 | 11 | 70 | 469 | 40 | 472 | 8.80e-28 | 115 |
| Msa1396160 | AT1G58360.1 | 23.542 | 480 | 314 | 14 | 31 | 469 | 13 | 480 | 4.05e-26 | 111 |
| Msa1396160 | AT1G44100.1 | 25.000 | 456 | 275 | 16 | 70 | 472 | 38 | 479 | 2.31e-25 | 108 |
| Msa1396160 | AT5G49630.1 | 25.231 | 432 | 261 | 15 | 35 | 418 | 10 | 427 | 1.09e-22 | 100 |
| Msa1396160 | AT4G35180.1 | 25.117 | 426 | 287 | 13 | 61 | 464 | 59 | 474 | 6.81e-20 | 92.4 |
| Msa1396160 | AT1G47670.1 | 24.565 | 460 | 285 | 17 | 36 | 456 | 69 | 505 | 1.45e-18 | 88.6 |
| Msa1396160 | AT4G35180.2 | 27.273 | 264 | 169 | 8 | 61 | 307 | 59 | 316 | 6.57e-15 | 76.3 |
| Msa1396160 | AT1G77690.1 | 22.738 | 431 | 283 | 12 | 32 | 442 | 18 | 418 | 2.35e-13 | 72.4 |
| Msa1396160 | AT2G21050.1 | 23.434 | 431 | 278 | 13 | 16 | 428 | 2 | 398 | 8.99e-13 | 70.5 |
Find 99 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAACTAACCTGGATTTC+TGG | 0.213258 | tig0022001:+86765 | None:intergenic |
| GTGTTGCTATCTCTGGTTAT+TGG | 0.236584 | tig0022001:-86188 | Msa1396160:CDS |
| CTCCACATATAATGATAAAT+TGG | 0.244397 | tig0022001:+87124 | None:intergenic |
| ATATGCTTTGGGACAGTAAT+TGG | 0.247452 | tig0022001:-87332 | Msa1396160:CDS |
| AAGACTTAAATTAGTTTAGA+TGG | 0.247828 | tig0022001:+88535 | None:intergenic |
| GCCATTCTTTCCAGATATAA+TGG | 0.250563 | tig0022001:-85464 | Msa1396160:CDS |
| GTTGGTTTGGAGGAGTAATT+TGG | 0.258662 | tig0022001:-88046 | Msa1396160:CDS |
| TTCACTCTTCTGGGTTGGTT+TGG | 0.267371 | tig0022001:-88059 | Msa1396160:CDS |
| ATTGAAAACTGTCCTTTCTT+TGG | 0.270053 | tig0022001:+85559 | None:intergenic |
| CCAAACAATGCCATTATATC+TGG | 0.276029 | tig0022001:+85454 | None:intergenic |
| TAAAGCTTCATTGATCCTTC+TGG | 0.278033 | tig0022001:+87147 | None:intergenic |
| TGGAGTTGTAACTATGCTTT+TGG | 0.281191 | tig0022001:-87106 | Msa1396160:CDS |
| ATCTCTGGTTATTGGGCATT+TGG | 0.283481 | tig0022001:-86180 | Msa1396160:CDS |
| CCAAACAAGGCATAATCTAT+TGG | 0.285091 | tig0022001:-85363 | Msa1396160:CDS |
| TGTTGCTATCTCTGGTTATT+GGG | 0.292003 | tig0022001:-86187 | Msa1396160:CDS |
| CCCAGAAGAGTGAATGAAAA+TGG | 0.300763 | tig0022001:+88068 | None:intergenic |
| CCAATAGATTATGCCTTGTT+TGG | 0.304670 | tig0022001:+85363 | None:intergenic |
| GATTCAAATAATTCATTTGT+TGG | 0.306422 | tig0022001:+85595 | None:intergenic |
| CCGAGAGAGTATTCTGTAAA+AGG | 0.306567 | tig0022001:-86864 | Msa1396160:CDS |
| TTCAATTTATCATATGCTTT+GGG | 0.330472 | tig0022001:-87343 | Msa1396160:CDS |
| GTAATTTGGTTGGTCCTTGC+AGG | 0.336273 | tig0022001:-88032 | Msa1396160:CDS |
| CCAGATATAATGGCATTGTT+TGG | 0.340494 | tig0022001:-85454 | Msa1396160:CDS |
| CTTCAATTTATCATATGCTT+TGG | 0.341049 | tig0022001:-87344 | Msa1396160:CDS |
| CTCATCCTTCTTCAAGTCTT+CGG | 0.352088 | tig0022001:-86069 | Msa1396160:CDS |
| ACTCTTCTGGGTTGGTTTGG+AGG | 0.360871 | tig0022001:-88056 | Msa1396160:CDS |
| TTCAAATGGCCTATAATTGC+AGG | 0.361568 | tig0022001:+85182 | None:intergenic |
| TATTGGGTGAATACATTGAT+TGG | 0.369575 | tig0022001:-85346 | Msa1396160:CDS |
| TATTTCAGTGTTGCTATCTC+TGG | 0.372416 | tig0022001:-86195 | Msa1396160:CDS |
| CCAGTTTAGATTCAGAGATA+TGG | 0.379682 | tig0022001:-87940 | Msa1396160:CDS |
| CAAACAAGGCATAATCTATT+GGG | 0.383365 | tig0022001:-85362 | Msa1396160:CDS |
| CCATATCTCTGAATCTAAAC+TGG | 0.388069 | tig0022001:+87940 | None:intergenic |
| CAAAACTATTGCTTCCCAAA+TGG | 0.410549 | tig0022001:-86113 | Msa1396160:CDS |
| CAATTCTTGCTAACTACATT+GGG | 0.412959 | tig0022001:-86140 | Msa1396160:CDS |
| TATACAAGTGATAGTGAAAA+GGG | 0.415951 | tig0022001:-88329 | Msa1396160:CDS |
| GCCATTATATCTGGAAAGAA+TGG | 0.421778 | tig0022001:+85463 | None:intergenic |
| TTTCATTCACTCTTCTGGGT+TGG | 0.422245 | tig0022001:-88064 | Msa1396160:CDS |
| AAGTTTGTTCTTGTTTCTAA+AGG | 0.431928 | tig0022001:-88254 | Msa1396160:intron |
| AAACTGTTTGGTGTCTTCAA+TGG | 0.434041 | tig0022001:-86828 | Msa1396160:CDS |
| TGGGCATTTGGAAATGCATC+TGG | 0.435496 | tig0022001:-86168 | Msa1396160:CDS |
| ACAATTCTTGCTAACTACAT+TGG | 0.436770 | tig0022001:-86141 | Msa1396160:CDS |
| GTAATTGGTGGTCCTCTTGT+GGG | 0.436804 | tig0022001:-87317 | Msa1396160:CDS |
| TCTCATGAAGATAAACTGTT+TGG | 0.440619 | tig0022001:-86840 | Msa1396160:CDS |
| ATATACAAGTGATAGTGAAA+AGG | 0.456820 | tig0022001:-88330 | Msa1396160:CDS |
| TACCAATTTATCATTATATG+TGG | 0.457634 | tig0022001:-87126 | Msa1396160:CDS |
| ATCCTTCTGGATGGTAAAGT+TGG | 0.467861 | tig0022001:+87160 | None:intergenic |
| TTGTTCCAAGGGTGCTCTCT+AGG | 0.470573 | tig0022001:-85528 | Msa1396160:CDS |
| AGTAATTGGTGGTCCTCTTG+TGG | 0.471430 | tig0022001:-87318 | Msa1396160:CDS |
| TAGATTATGCCTTGTTTGGA+AGG | 0.476875 | tig0022001:+85367 | None:intergenic |
| TCATTTGACAACATCTATTG+TGG | 0.482815 | tig0022001:-88111 | Msa1396160:CDS |
| CATTTGACAACATCTATTGT+GGG | 0.484467 | tig0022001:-88110 | Msa1396160:CDS |
| CAATGCGCAATGTTGTTCCA+AGG | 0.494420 | tig0022001:-85540 | Msa1396160:CDS |
| GATTCAGCAAGAAAATAAGA+TGG | 0.496713 | tig0022001:-88381 | Msa1396160:CDS |
| AACTTTGGCACCTCCTGTGA+AGG | 0.500740 | tig0022001:-86268 | Msa1396160:CDS |
| AAGAAGGATGAGTATATTAG+TGG | 0.500852 | tig0022001:+86080 | None:intergenic |
| TGGGATTATTCCAGAAATCC+AGG | 0.501151 | tig0022001:-86775 | Msa1396160:intron |
| AATGGAAGTGTAAGAATCAC+TGG | 0.501324 | tig0022001:+88086 | None:intergenic |
| CCCTATCACAACTAAAATTG+AGG | 0.506614 | tig0022001:+85315 | None:intergenic |
| CATAATTATTTGCTAGCTCA+AGG | 0.512919 | tig0022001:-88450 | Msa1396160:five_prime_UTR |
| GTGAATACATTGATTGGAGG+AGG | 0.520319 | tig0022001:-85340 | Msa1396160:CDS |
| CTCAGGGACGAAAATTCAAA+TGG | 0.522874 | tig0022001:+85168 | None:intergenic |
| ACTTCACCTGAGTTAGATGC+AGG | 0.525979 | tig0022001:-88281 | Msa1396160:CDS |
| ATTGACCTAGAGAGCACCCT+TGG | 0.527945 | tig0022001:+85523 | None:intergenic |
| AATAATCCCACTAGCATATG+TGG | 0.533821 | tig0022001:+86788 | None:intergenic |
| TATCTCAAGGAGTGAAAGGA+TGG | 0.534203 | tig0022001:+87075 | None:intergenic |
| ATTCAGCAAGAAAATAAGAT+GGG | 0.537062 | tig0022001:-88380 | Msa1396160:CDS |
| CTCTGAATCTAAACTGGCGG+CGG | 0.546660 | tig0022001:+87946 | None:intergenic |
| TTAGAACATCATGCTCAACT+TGG | 0.548316 | tig0022001:-87969 | Msa1396160:CDS |
| AGACTCTTTCCTCCCACAAG+AGG | 0.553648 | tig0022001:+87305 | None:intergenic |
| TGGGTGAATACATTGATTGG+AGG | 0.555938 | tig0022001:-85343 | Msa1396160:CDS |
| TGCTTTGGGACAGTAATTGG+TGG | 0.556122 | tig0022001:-87329 | Msa1396160:CDS |
| AATGTATCTCAAGGAGTGAA+AGG | 0.559352 | tig0022001:+87071 | None:intergenic |
| AATGCGCAATGTTGTTCCAA+GGG | 0.561895 | tig0022001:-85539 | Msa1396160:CDS |
| ACTTTCAAGCCTTCCAAACA+AGG | 0.562223 | tig0022001:-85376 | Msa1396160:CDS |
| GTTTGGAGGAGTAATTTGGT+TGG | 0.564814 | tig0022001:-88042 | Msa1396160:CDS |
| AATCAGATTAATGTATCTCA+AGG | 0.567736 | tig0022001:+87062 | None:intergenic |
| GAAACATGTTTGAATGATGA+TGG | 0.569231 | tig0022001:+88559 | None:intergenic |
| TACCAACTTTACCATCCAGA+AGG | 0.580856 | tig0022001:-87162 | Msa1396160:CDS |
| AGCATATGATAAATTGAAGA+GGG | 0.583245 | tig0022001:+87348 | None:intergenic |
| TTGCTACCACATATGCTAGT+GGG | 0.592496 | tig0022001:-86794 | Msa1396160:CDS |
| TTTGCTCCTGCATCTAACTC+AGG | 0.601599 | tig0022001:+88275 | None:intergenic |
| ATTGCTACCACATATGCTAG+TGG | 0.604816 | tig0022001:-86795 | Msa1396160:CDS |
| TATGCAACATTTCTCACCGT+CGG | 0.606735 | tig0022001:-87018 | Msa1396160:CDS |
| TCAATCCGAAGACTTGAAGA+AGG | 0.606882 | tig0022001:+86064 | None:intergenic |
| ACTTTGGCACCTCCTGTGAA+GGG | 0.608006 | tig0022001:-86267 | Msa1396160:CDS |
| ATTGGCAAAATGAAATCTAG+AGG | 0.608137 | tig0022001:+85415 | None:intergenic |
| TCAAATGGCCTATAATTGCA+GGG | 0.609462 | tig0022001:+85183 | None:intergenic |
| AAGCATATGATAAATTGAAG+AGG | 0.610873 | tig0022001:+87347 | None:intergenic |
| GCTTCATTGATCCTTCTGGA+TGG | 0.631067 | tig0022001:+87151 | None:intergenic |
| TGTGGGAGGAAAGAGTCTCA+AGG | 0.646216 | tig0022001:-87300 | Msa1396160:intron |
| TGAATACATTGATTGGAGGA+GGG | 0.653687 | tig0022001:-85339 | Msa1396160:CDS |
| ATACATATGAATCATAACAC+TGG | 0.653980 | tig0022001:-88422 | Msa1396160:exon |
| TCAAGTCTTCGGATTGACTG+CGG | 0.656105 | tig0022001:-86058 | Msa1396160:intron |
| TATCTCTGAATCTAAACTGG+CGG | 0.664050 | tig0022001:+87943 | None:intergenic |
| AGAATGTGATCACTCCTGCA+AGG | 0.671411 | tig0022001:+88018 | None:intergenic |
| ATTGGTGGTCCTCTTGTGGG+AGG | 0.671489 | tig0022001:-87314 | Msa1396160:CDS |
| TTTACAGAATACTCTCTCGG+CGG | 0.727989 | tig0022001:+86867 | None:intergenic |
| ACCGACGTATATCGAGCCGA+CGG | 0.742222 | tig0022001:+87002 | None:intergenic |
| GTAGGATCATGGTTACACTG+TGG | 0.750740 | tig0022001:-88137 | Msa1396160:intron |
| ACCGTCGGCTCGATATACGT+CGG | 0.773213 | tig0022001:-87003 | Msa1396160:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTAATTAATTTACTATA+TGG | - | tig0022001:85571-85590 | Msa1396160:CDS | 10.0% |
| !! | AATTAATTTACTATATGGTT+TGG | - | tig0022001:85576-85595 | Msa1396160:CDS | 15.0% |
| !! | ATAAGCATTACTATATAATA+AGG | + | tig0022001:88010-88029 | None:intergenic | 15.0% |
| !!! | GAATTATTTGAATCAATTTT+CGG | - | tig0022001:88163-88182 | Msa1396160:intron | 15.0% |
| !!! | ATAATCATTTTTACATATTC+AGG | + | tig0022001:88521-88540 | None:intergenic | 15.0% |
| !! | TGAATATGTAAAAATGATTA+TGG | - | tig0022001:88520-88539 | Msa1396160:five_prime_UTR | 15.0% |
| !!! | AAGACTTAAATTAGTTTAGA+TGG | + | tig0022001:85217-85236 | None:intergenic | 20.0% |
| !!! | AAAGAAAGAAAAGTACTAAA+AGG | + | tig0022001:85869-85888 | None:intergenic | 20.0% |
| !!! | TCATTGTTGTTATTAATCAT+TGG | - | tig0022001:85890-85909 | Msa1396160:intron | 20.0% |
| !! | TTCAATTTATCATATGCTTT+GGG | - | tig0022001:86406-86425 | Msa1396160:intron | 20.0% |
| !! | TACCAATTTATCATTATATG+TGG | - | tig0022001:86623-86642 | Msa1396160:intron | 20.0% |
| !!! | AGAATTGATTTTGACATTTT+TGG | - | tig0022001:87103-87122 | Msa1396160:CDS | 20.0% |
| !! | AGAGTTTATGTTATATATGT+TGG | - | tig0022001:87860-87879 | Msa1396160:intron | 20.0% |
| !! | TTATAACTTGATTATATTGC+AGG | - | tig0022001:88120-88139 | Msa1396160:CDS | 20.0% |
| !! | GATTCAAATAATTCATTTGT+TGG | + | tig0022001:88157-88176 | None:intergenic | 20.0% |
| !! | GTTATATTGTAAAAAACCAT+TGG | + | tig0022001:88355-88374 | None:intergenic | 20.0% |
| ! | ATACATATGAATCATAACAC+TGG | - | tig0022001:85327-85346 | Msa1396160:CDS | 25.0% |
| ! | ATTCAGCAAGAAAATAAGAT+GGG | - | tig0022001:85369-85388 | Msa1396160:CDS | 25.0% |
| !! | ATATACAAGTGATAGTGAAA+AGG | - | tig0022001:85419-85438 | Msa1396160:CDS | 25.0% |
| !! | TATACAAGTGATAGTGAAAA+GGG | - | tig0022001:85420-85439 | Msa1396160:CDS | 25.0% |
| !!! | AAGTTTGTTCTTGTTTCTAA+AGG | - | tig0022001:85495-85514 | Msa1396160:CDS | 25.0% |
| !! | TTTGGTTGTGTATATTTTGT+AGG | - | tig0022001:85594-85613 | Msa1396160:CDS | 25.0% |
| ! | AATATTGTGCTTATATGAGT+AGG | + | tig0022001:85998-86017 | None:intergenic | 25.0% |
| ! | GTAACTTAAAGTGACTAAAT+TGG | + | tig0022001:86043-86062 | None:intergenic | 25.0% |
| !! | AATTGAGATTGTAGCTTTTA+AGG | - | tig0022001:86203-86222 | Msa1396160:CDS | 25.0% |
| !!! | TCTCTAAAATTGTATACAGT+AGG | + | tig0022001:86235-86254 | None:intergenic | 25.0% |
| ! | AGCATATGATAAATTGAAGA+GGG | + | tig0022001:86404-86423 | None:intergenic | 25.0% |
| ! | AAGCATATGATAAATTGAAG+AGG | + | tig0022001:86405-86424 | None:intergenic | 25.0% |
| ! | CTTCAATTTATCATATGCTT+TGG | - | tig0022001:86405-86424 | Msa1396160:intron | 25.0% |
| ! | CTCAAGGTAATAACATAAAA+AGG | - | tig0022001:86465-86484 | Msa1396160:intron | 25.0% |
| ! | GAAACTATAGTATAAGAATG+TGG | + | tig0022001:86527-86546 | None:intergenic | 25.0% |
| ! | CTTATACTATAGTTTCACTA+AGG | - | tig0022001:86531-86550 | Msa1396160:intron | 25.0% |
| ! | CTCCACATATAATGATAAAT+TGG | + | tig0022001:86628-86647 | None:intergenic | 25.0% |
| ! | AATCAGATTAATGTATCTCA+AGG | + | tig0022001:86690-86709 | None:intergenic | 25.0% |
| ! | TAGAGAACAAATGTTGTAAA+TGG | - | tig0022001:87025-87044 | Msa1396160:CDS | 25.0% |
| !!! | TTTTGTTTCACTTTATGAAG+AGG | - | tig0022001:87059-87078 | Msa1396160:CDS | 25.0% |
| !!! | CACTTTAGAAACAATTTTGA+AGG | + | tig0022001:87154-87173 | None:intergenic | 25.0% |
| ! | TTGGTTATTCTAAACTCAAA+AGG | + | tig0022001:87409-87428 | None:intergenic | 25.0% |
| ! | ATGTATATGCATAACAGTTT+AGG | + | tig0022001:87725-87744 | None:intergenic | 25.0% |
| !! | TCAATTTTGCGATTCAAATT+CGG | - | tig0022001:87748-87767 | Msa1396160:intron | 25.0% |
| ! | GAACTTATTTATAGCTTAGT+TGG | - | tig0022001:87785-87804 | Msa1396160:intron | 25.0% |
| ! | TAAATGTACATGTTACTGTT+TGG | - | tig0022001:87823-87842 | Msa1396160:intron | 25.0% |
| !! | GCTTTATTGAAATAAGCTTA+AGG | + | tig0022001:87893-87912 | None:intergenic | 25.0% |
| ! | TTATTTCAATAAAGCTTCGA+TGG | - | tig0022001:87898-87917 | Msa1396160:intron | 25.0% |
| ! | TCAAGTTATAATCATTCATC+AGG | + | tig0022001:88111-88130 | None:intergenic | 25.0% |
| ! | ATGTAAAAATGATTATGGCA+AGG | - | tig0022001:88525-88544 | Msa1396160:five_prime_UTR | 25.0% |
| ! | TGTAAAAATGATTATGGCAA+GGG | - | tig0022001:88526-88545 | Msa1396160:five_prime_UTR | 25.0% |
| GAAACATGTTTGAATGATGA+TGG | + | tig0022001:85193-85212 | None:intergenic | 30.0% | |
| ! | CATAATTATTTGCTAGCTCA+AGG | - | tig0022001:85299-85318 | Msa1396160:CDS | 30.0% |
| GATTCAGCAAGAAAATAAGA+TGG | - | tig0022001:85368-85387 | Msa1396160:CDS | 30.0% | |
| ! | GTGTATATTTTGTAGGATCA+TGG | - | tig0022001:85601-85620 | Msa1396160:CDS | 30.0% |
| TCATTTGACAACATCTATTG+TGG | - | tig0022001:85638-85657 | Msa1396160:intron | 30.0% | |
| CATTTGACAACATCTATTGT+GGG | - | tig0022001:85639-85658 | Msa1396160:intron | 30.0% | |
| ! | GATATGGCTAGAGATATTTT+AGG | - | tig0022001:85825-85844 | Msa1396160:intron | 30.0% |
| ATATGAGTAGGAATCAAACT+CGG | + | tig0022001:85986-86005 | None:intergenic | 30.0% | |
| AAAATTGTATACAGTAGGCA+AGG | + | tig0022001:86230-86249 | None:intergenic | 30.0% | |
| ! | ATATAGTATTTTGCCCATCT+TGG | + | tig0022001:86378-86397 | None:intergenic | 30.0% |
| AGATGGGCAAAATACTATAT+AGG | - | tig0022001:86378-86397 | Msa1396160:intron | 30.0% | |
| GTAAGGAGATAAAAACACAA+TGG | - | tig0022001:86768-86787 | Msa1396160:intron | 30.0% | |
| AGATAAAAACACAATGGCAT+TGG | - | tig0022001:86774-86793 | Msa1396160:intron | 30.0% | |
| TCTCATGAAGATAAACTGTT+TGG | - | tig0022001:86909-86928 | Msa1396160:intron | 30.0% | |
| AAGTTAAAAATCGACTGTAG+AGG | + | tig0022001:87199-87218 | None:intergenic | 30.0% | |
| ! | AATTTTGTCTTCTCCAAAAG+TGG | - | tig0022001:87294-87313 | Msa1396160:intron | 30.0% |
| AATAATTGTGTTTGGATCTG+CGG | + | tig0022001:87355-87374 | None:intergenic | 30.0% | |
| CACAACGAAATAATTGTGTT+TGG | + | tig0022001:87363-87382 | None:intergenic | 30.0% | |
| ! | CAATTCTTGTGCAATTTTGT+AGG | - | tig0022001:87457-87476 | Msa1396160:intron | 30.0% |
| ACAATTCTTGCTAACTACAT+TGG | - | tig0022001:87608-87627 | Msa1396160:intron | 30.0% | |
| CAATTCTTGCTAACTACATT+GGG | - | tig0022001:87609-87628 | Msa1396160:intron | 30.0% | |
| AAGAAGGATGAGTATATTAG+TGG | + | tig0022001:87672-87691 | None:intergenic | 30.0% | |
| ! | CAATTTTGCGATTCAAATTC+GGG | - | tig0022001:87749-87768 | Msa1396160:intron | 30.0% |
| ! | TCCTCTTTGATAATAGACAT+AGG | - | tig0022001:87940-87959 | Msa1396160:CDS | 30.0% |
| ACCTATGTCTATTATCAAAG+AGG | + | tig0022001:87944-87963 | None:intergenic | 30.0% | |
| ATTGAAAACTGTCCTTTCTT+TGG | + | tig0022001:88193-88212 | None:intergenic | 30.0% | |
| ATTGGCAAAATGAAATCTAG+AGG | + | tig0022001:88337-88356 | None:intergenic | 30.0% | |
| ! | TCTAGATTTCATTTTGCCAA+TGG | - | tig0022001:88336-88355 | Msa1396160:CDS | 30.0% |
| CAAACAAGGCATAATCTATT+GGG | - | tig0022001:88387-88406 | Msa1396160:CDS | 30.0% | |
| TATTGGGTGAATACATTGAT+TGG | - | tig0022001:88403-88422 | Msa1396160:CDS | 30.0% | |
| !!! | TCCTCAATTTTAGTTGTGAT+AGG | - | tig0022001:88433-88452 | Msa1396160:exon | 30.0% |
| !!! | CCTCAATTTTAGTTGTGATA+GGG | - | tig0022001:88434-88453 | Msa1396160:exon | 30.0% |
| !!! | CTCAATTTTAGTTGTGATAG+GGG | - | tig0022001:88435-88454 | Msa1396160:exon | 30.0% |
| !!! | TCAATTTTAGTTGTGATAGG+GGG | - | tig0022001:88436-88455 | Msa1396160:exon | 30.0% |
| ! | AATGGAAGTGTAAGAATCAC+TGG | + | tig0022001:85666-85685 | None:intergenic | 35.0% |
| ! | TCCATTTTCATTCACTCTTC+TGG | - | tig0022001:85680-85699 | Msa1396160:intron | 35.0% |
| ! | CCATTTTCATTCACTCTTCT+GGG | - | tig0022001:85681-85700 | Msa1396160:intron | 35.0% |
| TTAGAACATCATGCTCAACT+TGG | - | tig0022001:85780-85799 | Msa1396160:intron | 35.0% | |
| TATCTCTGAATCTAAACTGG+CGG | + | tig0022001:85809-85828 | None:intergenic | 35.0% | |
| CCATATCTCTGAATCTAAAC+TGG | + | tig0022001:85812-85831 | None:intergenic | 35.0% | |
| CCAGTTTAGATTCAGAGATA+TGG | - | tig0022001:85809-85828 | Msa1396160:intron | 35.0% | |
| ! | GACTAAATTGGTGATTCTCT+CGG | + | tig0022001:86031-86050 | None:intergenic | 35.0% |
| !! | TGATGCATTGCTTTGTTTGT+TGG | - | tig0022001:86261-86280 | Msa1396160:CDS | 35.0% |
| !! | ATTGCTTTGTTTGTTGGACA+CGG | - | tig0022001:86267-86286 | Msa1396160:CDS | 35.0% |
| TTGCTTGAAAATGTTGTGAC+AGG | - | tig0022001:86351-86370 | Msa1396160:intron | 35.0% | |
| !! | ATATGCTTTGGGACAGTAAT+TGG | - | tig0022001:86417-86436 | Msa1396160:intron | 35.0% |
| TAAAGCTTCATTGATCCTTC+TGG | + | tig0022001:86605-86624 | None:intergenic | 35.0% | |
| ! | TGGAGTTGTAACTATGCTTT+TGG | - | tig0022001:86643-86662 | Msa1396160:intron | 35.0% |
| AATGTATCTCAAGGAGTGAA+AGG | + | tig0022001:86681-86700 | None:intergenic | 35.0% | |
| !! | AATTGACTGTGTTGATTGCA+TGG | - | tig0022001:86832-86851 | Msa1396160:CDS | 35.0% |
| ! | CCTTTTACAGAATACTCTCT+CGG | + | tig0022001:86888-86907 | None:intergenic | 35.0% |
| !! | AAACTGTTTGGTGTCTTCAA+TGG | - | tig0022001:86921-86940 | Msa1396160:intron | 35.0% |
| AATAATCCCACTAGCATATG+TGG | + | tig0022001:86964-86983 | None:intergenic | 35.0% | |
| AACAAGATGCAAAACTAACC+TGG | + | tig0022001:86995-87014 | None:intergenic | 35.0% | |
| GAAGACAAAATTCAGTCTAG+AGG | + | tig0022001:87286-87305 | None:intergenic | 35.0% | |
| TGATTCTGGATATGTACGTT+TGG | + | tig0022001:87322-87341 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGTAGGCAACTT+TGG | - | tig0022001:87466-87485 | Msa1396160:intron | 35.0% |
| ! | TTGAACATTTTTCCCTTCAC+AGG | + | tig0022001:87497-87516 | None:intergenic | 35.0% |
| GTGAAGGGAAAAATGTTCAA+AGG | - | tig0022001:87497-87516 | Msa1396160:intron | 35.0% | |
| ! | TATTTCAGTGTTGCTATCTC+TGG | - | tig0022001:87554-87573 | Msa1396160:intron | 35.0% |
| TGTTGCTATCTCTGGTTATT+GGG | - | tig0022001:87562-87581 | Msa1396160:intron | 35.0% | |
| CAAAACTATTGCTTCCCAAA+TGG | - | tig0022001:87636-87655 | Msa1396160:intron | 35.0% | |
| GTGGTCAAGAAAAACCATTT+GGG | + | tig0022001:87653-87672 | None:intergenic | 35.0% | |
| AGTGGTCAAGAAAAACCATT+TGG | + | tig0022001:87654-87673 | None:intergenic | 35.0% | |
| ! | ATTTTCGGAGATCCAAAGAA+AGG | - | tig0022001:88178-88197 | Msa1396160:intron | 35.0% |
| GCCATTCTTTCCAGATATAA+TGG | - | tig0022001:88285-88304 | Msa1396160:CDS | 35.0% | |
| GCCATTATATCTGGAAAGAA+TGG | + | tig0022001:88289-88308 | None:intergenic | 35.0% | |
| CCAAACAATGCCATTATATC+TGG | + | tig0022001:88298-88317 | None:intergenic | 35.0% | |
| CCAGATATAATGGCATTGTT+TGG | - | tig0022001:88295-88314 | Msa1396160:CDS | 35.0% | |
| !! | TAGATTATGCCTTGTTTGGA+AGG | + | tig0022001:88385-88404 | None:intergenic | 35.0% |
| ! | CCAATAGATTATGCCTTGTT+TGG | + | tig0022001:88389-88408 | None:intergenic | 35.0% |
| CCAAACAAGGCATAATCTAT+TGG | - | tig0022001:88386-88405 | Msa1396160:CDS | 35.0% | |
| ! | TGAATACATTGATTGGAGGA+GGG | - | tig0022001:88410-88429 | Msa1396160:CDS | 35.0% |
| CCCTATCACAACTAAAATTG+AGG | + | tig0022001:88437-88456 | None:intergenic | 35.0% | |
| ! | TTTTTCGTCCCTGCAATTAT+AGG | - | tig0022001:88558-88577 | Msa1396160:five_prime_UTR | 35.0% |
| TCAAATGGCCTATAATTGCA+GGG | + | tig0022001:88569-88588 | None:intergenic | 35.0% | |
| TTCAAATGGCCTATAATTGC+AGG | + | tig0022001:88570-88589 | None:intergenic | 35.0% | |
| CCCAGAAGAGTGAATGAAAA+TGG | + | tig0022001:85684-85703 | None:intergenic | 40.0% | |
| TTTCATTCACTCTTCTGGGT+TGG | - | tig0022001:85685-85704 | Msa1396160:intron | 40.0% | |
| !! | GTTGGTTTGGAGGAGTAATT+TGG | - | tig0022001:85703-85722 | Msa1396160:intron | 40.0% |
| GTTTGGAGGAGTAATTTGGT+TGG | - | tig0022001:85707-85726 | Msa1396160:intron | 40.0% | |
| !! | TGTTTCGAACCTTTGAAGCA+CGG | + | tig0022001:86323-86342 | None:intergenic | 40.0% |
| TACCAACTTTACCATCCAGA+AGG | - | tig0022001:86587-86606 | Msa1396160:intron | 40.0% | |
| ATCCTTCTGGATGGTAAAGT+TGG | + | tig0022001:86592-86611 | None:intergenic | 40.0% | |
| TATCTCAAGGAGTGAAAGGA+TGG | + | tig0022001:86677-86696 | None:intergenic | 40.0% | |
| TATGCAACATTTCTCACCGT+CGG | - | tig0022001:86731-86750 | Msa1396160:intron | 40.0% | |
| TTTACAGAATACTCTCTCGG+CGG | + | tig0022001:86885-86904 | None:intergenic | 40.0% | |
| !! | CCGAGAGAGTATTCTGTAAA+AGG | - | tig0022001:86885-86904 | Msa1396160:CDS | 40.0% |
| ATTGCTACCACATATGCTAG+TGG | - | tig0022001:86954-86973 | Msa1396160:intron | 40.0% | |
| TTGCTACCACATATGCTAGT+GGG | - | tig0022001:86955-86974 | Msa1396160:intron | 40.0% | |
| TGGGATTATTCCAGAAATCC+AGG | - | tig0022001:86974-86993 | Msa1396160:intron | 40.0% | |
| GCAAAACTAACCTGGATTTC+TGG | + | tig0022001:86987-87006 | None:intergenic | 40.0% | |
| !! | TGTACGTTTGGTTCCACTTT+TGG | + | tig0022001:87310-87329 | None:intergenic | 40.0% |
| AGTCACTTGACATGTGCATT+TGG | + | tig0022001:87428-87447 | None:intergenic | 40.0% | |
| ! | AACATTTTTCCCTTCACAGG+AGG | + | tig0022001:87494-87513 | None:intergenic | 40.0% |
| ! | GTGTTGCTATCTCTGGTTAT+TGG | - | tig0022001:87561-87580 | Msa1396160:intron | 40.0% |
| ATCTCTGGTTATTGGGCATT+TGG | - | tig0022001:87569-87588 | Msa1396160:intron | 40.0% | |
| CTCATCCTTCTTCAAGTCTT+CGG | - | tig0022001:87680-87699 | Msa1396160:intron | 40.0% | |
| TCAATCCGAAGACTTGAAGA+AGG | + | tig0022001:87688-87707 | None:intergenic | 40.0% | |
| AATGCGCAATGTTGTTCCAA+GGG | - | tig0022001:88210-88229 | Msa1396160:intron | 40.0% | |
| CAACATTGCTGCAAAAAGTG+TGG | + | tig0022001:88266-88285 | None:intergenic | 40.0% | |
| ACTTTCAAGCCTTCCAAACA+AGG | - | tig0022001:88373-88392 | Msa1396160:CDS | 40.0% | |
| ! | TGGGTGAATACATTGATTGG+AGG | - | tig0022001:88406-88425 | Msa1396160:CDS | 40.0% |
| ! | GTGAATACATTGATTGGAGG+AGG | - | tig0022001:88409-88428 | Msa1396160:CDS | 40.0% |
| ACTTCACCTGAGTTAGATGC+AGG | - | tig0022001:85468-85487 | Msa1396160:CDS | 45.0% | |
| TTTGCTCCTGCATCTAACTC+AGG | + | tig0022001:85477-85496 | None:intergenic | 45.0% | |
| GTAGGATCATGGTTACACTG+TGG | - | tig0022001:85612-85631 | Msa1396160:intron | 45.0% | |
| !! | TTCACTCTTCTGGGTTGGTT+TGG | - | tig0022001:85690-85709 | Msa1396160:intron | 45.0% |
| ! | GTAATTTGGTTGGTCCTTGC+AGG | - | tig0022001:85717-85736 | Msa1396160:intron | 45.0% |
| AGAATGTGATCACTCCTGCA+AGG | + | tig0022001:85734-85753 | None:intergenic | 45.0% | |
| TCATTGGACCACTAGTGCTA+AGG | - | tig0022001:85906-85925 | Msa1396160:intron | 45.0% | |
| TAAGGTCTAGCGCAAGTGAT+TGG | - | tig0022001:85924-85943 | Msa1396160:intron | 45.0% | |
| GTGATTCTCTCGGTTCAATC+AGG | + | tig0022001:86021-86040 | None:intergenic | 45.0% | |
| ! | TTGTTTGTTGGACACGGACA+TGG | - | tig0022001:86273-86292 | Msa1396160:CDS | 45.0% |
| ATGTTGTGACAGGACCAAGA+TGG | - | tig0022001:86361-86380 | Msa1396160:intron | 45.0% | |
| TGTTGTGACAGGACCAAGAT+GGG | - | tig0022001:86362-86381 | Msa1396160:intron | 45.0% | |
| !! | TGCTTTGGGACAGTAATTGG+TGG | - | tig0022001:86420-86439 | Msa1396160:intron | 45.0% |
| ! | AGTAATTGGTGGTCCTCTTG+TGG | - | tig0022001:86431-86450 | Msa1396160:intron | 45.0% |
| ! | GTAATTGGTGGTCCTCTTGT+GGG | - | tig0022001:86432-86451 | Msa1396160:intron | 45.0% |
| GCTTCATTGATCCTTCTGGA+TGG | + | tig0022001:86601-86620 | None:intergenic | 45.0% | |
| TTGATTGCATGGTCCAATGC+AGG | - | tig0022001:86843-86862 | Msa1396160:CDS | 45.0% | |
| ! | ATCTTTCGAGTGACCTGCAT+TGG | + | tig0022001:86859-86878 | None:intergenic | 45.0% |
| ! | GCGGTGACAAAAACTGATTC+TGG | + | tig0022001:87336-87355 | None:intergenic | 45.0% |
| TGGGCATTTGGAAATGCATC+TGG | - | tig0022001:87581-87600 | Msa1396160:intron | 45.0% | |
| TCAAGTCTTCGGATTGACTG+CGG | - | tig0022001:87691-87710 | Msa1396160:intron | 45.0% | |
| TTGCGATTCAAATTCGGGTG+CGG | - | tig0022001:87754-87773 | Msa1396160:intron | 45.0% | |
| CAATGCGCAATGTTGTTCCA+AGG | - | tig0022001:88209-88228 | Msa1396160:intron | 45.0% | |
| !! | ACTCTTCTGGGTTGGTTTGG+AGG | - | tig0022001:85693-85712 | Msa1396160:intron | 50.0% |
| CTCTGAATCTAAACTGGCGG+CGG | + | tig0022001:85806-85825 | None:intergenic | 50.0% | |
| AGACTCTTTCCTCCCACAAG+AGG | + | tig0022001:86447-86466 | None:intergenic | 50.0% | |
| TGTGGGAGGAAAGAGTCTCA+AGG | - | tig0022001:86449-86468 | Msa1396160:intron | 50.0% | |
| AACTTTGGCACCTCCTGTGA+AGG | - | tig0022001:87481-87500 | Msa1396160:intron | 50.0% | |
| ACTTTGGCACCTCCTGTGAA+GGG | - | tig0022001:87482-87501 | Msa1396160:intron | 50.0% | |
| TGCGATTCAAATTCGGGTGC+GGG | - | tig0022001:87755-87774 | Msa1396160:intron | 50.0% | |
| !! | TTGTTCCAAGGGTGCTCTCT+AGG | - | tig0022001:88221-88240 | Msa1396160:intron | 50.0% |
| !! | ATTGACCTAGAGAGCACCCT+TGG | + | tig0022001:88229-88248 | None:intergenic | 50.0% |
| GCGCTAGACCTTAGCACTAG+TGG | + | tig0022001:85917-85936 | None:intergenic | 55.0% | |
| !! | GCACGGACACCTCTGGAATT+AGG | + | tig0022001:86306-86325 | None:intergenic | 55.0% |
| !! | CTTTGAAGCACGGACACCTC+TGG | + | tig0022001:86313-86332 | None:intergenic | 55.0% |
| !! | CAGAGGTGTCCGTGCTTCAA+AGG | - | tig0022001:86311-86330 | Msa1396160:intron | 55.0% |
| ! | ATTGGTGGTCCTCTTGTGGG+AGG | - | tig0022001:86435-86454 | Msa1396160:intron | 55.0% |
| !! | ACCGTCGGCTCGATATACGT+CGG | - | tig0022001:86746-86765 | Msa1396160:intron | 55.0% |
| ACCGACGTATATCGAGCCGA+CGG | + | tig0022001:86750-86769 | None:intergenic | 55.0% | |
| CGGCTCGATATACGTCGGTA+AGG | - | tig0022001:86751-86770 | Msa1396160:intron | 55.0% | |
| GGCGACACGCCTAATTCCAG+AGG | - | tig0022001:86294-86313 | Msa1396160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022001 | gene | 85176 | 88595 | 85176 | ID=Msa1396160;Name=Msa1396160 |
| tig0022001 | mRNA | 85176 | 88595 | 85176 | ID=Msa1396160-mRNA-1;Parent=Msa1396160;Name=Msa1396160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=157|0.83|0.85|1|1|1|7|73|472 |
| tig0022001 | exon | 85176 | 85629 | 85176 | ID=Msa1396160-mRNA-1:exon:15346;Parent=Msa1396160-mRNA-1 |
| tig0022001 | exon | 86059 | 86292 | 86059 | ID=Msa1396160-mRNA-1:exon:15345;Parent=Msa1396160-mRNA-1 |
| tig0022001 | exon | 86776 | 86906 | 86776 | ID=Msa1396160-mRNA-1:exon:15344;Parent=Msa1396160-mRNA-1 |
| tig0022001 | exon | 87004 | 87190 | 87004 | ID=Msa1396160-mRNA-1:exon:15343;Parent=Msa1396160-mRNA-1 |
| tig0022001 | exon | 87301 | 87371 | 87301 | ID=Msa1396160-mRNA-1:exon:15342;Parent=Msa1396160-mRNA-1 |
| tig0022001 | exon | 87925 | 88155 | 87925 | ID=Msa1396160-mRNA-1:exon:15341;Parent=Msa1396160-mRNA-1 |
| tig0022001 | exon | 88255 | 88595 | 88255 | ID=Msa1396160-mRNA-1:exon:15340;Parent=Msa1396160-mRNA-1 |
| tig0022001 | five_prime_UTR | 88439 | 88595 | 88439 | ID=Msa1396160-mRNA-1:five_prime_utr;Parent=Msa1396160-mRNA-1 |
| tig0022001 | CDS | 88255 | 88438 | 88255 | ID=Msa1396160-mRNA-1:cds;Parent=Msa1396160-mRNA-1 |
| tig0022001 | CDS | 87925 | 88155 | 87925 | ID=Msa1396160-mRNA-1:cds;Parent=Msa1396160-mRNA-1 |
| tig0022001 | CDS | 87301 | 87371 | 87301 | ID=Msa1396160-mRNA-1:cds;Parent=Msa1396160-mRNA-1 |
| tig0022001 | CDS | 87004 | 87190 | 87004 | ID=Msa1396160-mRNA-1:cds;Parent=Msa1396160-mRNA-1 |
| tig0022001 | CDS | 86776 | 86906 | 86776 | ID=Msa1396160-mRNA-1:cds;Parent=Msa1396160-mRNA-1 |
| tig0022001 | CDS | 86059 | 86292 | 86059 | ID=Msa1396160-mRNA-1:cds;Parent=Msa1396160-mRNA-1 |
| tig0022001 | CDS | 85249 | 85629 | 85249 | ID=Msa1396160-mRNA-1:cds;Parent=Msa1396160-mRNA-1 |
| tig0022001 | three_prime_UTR | 85176 | 85248 | 85176 | ID=Msa1396160-mRNA-1:three_prime_utr;Parent=Msa1396160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
