Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035790 | sp|F4HW02|GAT1_ARATH | 51.810 | 442 | 202 | 2 | 41 | 471 | 9 | 450 | 6.45e-164 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035790 | A0A072VPU6 | 96.050 | 481 | 10 | 1 | 1 | 472 | 1 | 481 | 0.0 | 928 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026420 | Msa0035790 | 0.822425 | 2.385123e-53 | -8.615850e-47 |
| Msa0035790 | Msa0046680 | 0.832475 | 9.257571e-56 | -8.615850e-47 |
| Msa0035790 | Msa0051480 | 0.856631 | 2.823422e-62 | -8.615850e-47 |
| Msa0035790 | Msa0051620 | 0.837002 | 6.718595e-57 | -8.615850e-47 |
| Msa0035790 | Msa0051730 | 0.827196 | 1.787730e-54 | -8.615850e-47 |
| Msa0035790 | Msa0083890 | 0.964510 | 2.036940e-123 | -8.615850e-47 |
| Msa0035790 | Msa0146090 | 0.820005 | 8.620612e-53 | -8.615850e-47 |
| Msa0035790 | Msa0146200 | 0.857390 | 1.685956e-62 | -8.615850e-47 |
| Msa0035790 | Msa0385320 | 0.850033 | 2.205856e-60 | -8.615850e-47 |
| Msa0035790 | Msa0393100 | 0.806148 | 9.468676e-50 | -8.615850e-47 |
| Msa0035790 | Msa0402800 | 0.827835 | 1.256163e-54 | -8.615850e-47 |
| Msa0035790 | Msa0438070 | 0.859593 | 3.714778e-63 | -8.615850e-47 |
| Msa0035790 | Msa0449620 | 0.832477 | 9.243214e-56 | -8.615850e-47 |
| Msa0035790 | Msa0466850 | 0.832499 | 9.132002e-56 | -8.615850e-47 |
| Msa0035790 | Msa0480540 | 0.810027 | 1.413907e-50 | -8.615850e-47 |
| Msa0035790 | Msa0480550 | 0.833769 | 4.409057e-56 | -8.615850e-47 |
| Msa0035790 | Msa0481740 | 0.830827 | 2.358095e-55 | -8.615850e-47 |
| Msa0035790 | Msa0481770 | 0.898169 | 6.901996e-77 | -8.615850e-47 |
| Msa0035790 | Msa0497860 | 0.827473 | 1.534094e-54 | -8.615850e-47 |
| Msa0035790 | Msa0513670 | 0.833150 | 6.292433e-56 | -8.615850e-47 |
| Msa0035790 | Msa0523080 | 0.822760 | 1.993212e-53 | -8.615850e-47 |
| Msa0035790 | Msa0568110 | 0.828447 | 8.946879e-55 | -8.615850e-47 |
| Msa0035790 | Msa0570460 | 0.835340 | 1.776524e-56 | -8.615850e-47 |
| Msa0035790 | Msa0572370 | -0.831339 | 1.765999e-55 | -8.615850e-47 |
| Msa0035790 | Msa0744550 | 0.813616 | 2.338974e-51 | -8.615850e-47 |
| Msa0035790 | Msa0744560 | 0.834785 | 2.451403e-56 | -8.615850e-47 |
| Msa0035790 | Msa0746340 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
| Msa0035790 | Msa0826370 | 0.811070 | 8.413328e-51 | -8.615850e-47 |
| Msa0035790 | Msa0826380 | 0.804543 | 2.053624e-49 | -8.615850e-47 |
| Msa0035790 | Msa0826450 | 0.807891 | 4.049373e-50 | -8.615850e-47 |
| Msa0035790 | Msa0865810 | 0.838133 | 3.445256e-57 | -8.615850e-47 |
| Msa0035790 | Msa0865820 | 0.801943 | 7.091213e-49 | -8.615850e-47 |
| Msa0035790 | Msa0865830 | 0.807574 | 4.729831e-50 | -8.615850e-47 |
| Msa0035790 | Msa1067800 | 0.810716 | 1.003895e-50 | -8.615850e-47 |
| Msa0035790 | Msa1080650 | 0.835478 | 1.638996e-56 | -8.615850e-47 |
| Msa0035790 | Msa1126440 | 0.830376 | 3.040449e-55 | -8.615850e-47 |
| Msa0035790 | Msa1183750 | 0.818170 | 2.254440e-52 | -8.615850e-47 |
| Msa0035790 | Msa1224510 | 0.807580 | 4.714818e-50 | -8.615850e-47 |
| Msa0035790 | Msa1256600 | 0.804319 | 2.286609e-49 | -8.615850e-47 |
| Msa0035790 | Msa1309050 | 0.809434 | 1.895827e-50 | -8.615850e-47 |
| Msa0035790 | Msa1322180 | 0.806338 | 8.636165e-50 | -8.615850e-47 |
| Msa0035790 | Msa1333700 | 0.809797 | 1.584410e-50 | -8.615850e-47 |
| Msa0035790 | Msa1346010 | 0.821825 | 3.286633e-53 | -8.615850e-47 |
| Msa0035790 | Msa1349830 | 0.807957 | 3.921874e-50 | -8.615850e-47 |
| Msa0035790 | Msa1377050 | 0.838179 | 3.354122e-57 | -8.615850e-47 |
| Msa0035790 | Msa1383790 | 0.828526 | 8.559889e-55 | -8.615850e-47 |
| Msa0035790 | Msa1396160 | 0.997196 | 1.972853e-238 | -8.615850e-47 |
| Msa0035790 | Msa1398120 | 0.800082 | 1.703113e-48 | -8.615850e-47 |
| Msa0035790 | Msa1449470 | 0.801459 | 8.914248e-49 | -8.615850e-47 |
| Msa0035790 | Msa1453600 | 0.888284 | 6.769128e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035790 | MtrunA17_Chr1g0198081 | 96.050 | 481 | 10 | 1 | 1 | 472 | 1 | 481 | 0.0 | 928 |
| Msa0035790 | MtrunA17_Chr4g0027241 | 57.143 | 462 | 188 | 2 | 19 | 471 | 1 | 461 | 0.0 | 551 |
| Msa0035790 | MtrunA17_Chr8g0387941 | 47.178 | 443 | 221 | 5 | 41 | 472 | 10 | 450 | 2.24e-135 | 398 |
| Msa0035790 | MtrunA17_Chr1g0184721 | 34.272 | 426 | 255 | 8 | 61 | 471 | 24 | 439 | 4.87e-73 | 237 |
| Msa0035790 | MtrunA17_Chr4g0027261 | 55.440 | 193 | 79 | 1 | 279 | 471 | 1 | 186 | 1.69e-67 | 214 |
| Msa0035790 | MtrunA17_Chr6g0458931 | 29.530 | 447 | 285 | 10 | 40 | 470 | 23 | 455 | 1.34e-55 | 191 |
| Msa0035790 | MtrunA17_Chr2g0331721 | 29.053 | 475 | 300 | 13 | 19 | 470 | 1 | 461 | 6.89e-53 | 184 |
| Msa0035790 | MtrunA17_Chr5g0436281 | 31.980 | 394 | 241 | 8 | 90 | 471 | 4 | 382 | 1.51e-48 | 171 |
| Msa0035790 | MtrunA17_Chr8g0376991 | 30.070 | 429 | 264 | 12 | 61 | 470 | 25 | 436 | 1.73e-48 | 172 |
| Msa0035790 | MtrunA17_Chr4g0058161 | 29.424 | 469 | 290 | 13 | 20 | 471 | 5 | 449 | 4.88e-46 | 166 |
| Msa0035790 | MtrunA17_Chr4g0057851 | 28.230 | 418 | 270 | 10 | 66 | 467 | 17 | 420 | 1.33e-45 | 164 |
| Msa0035790 | MtrunA17_Chr6g0459021 | 28.791 | 455 | 290 | 11 | 32 | 470 | 11 | 447 | 9.18e-43 | 157 |
| Msa0035790 | MtrunA17_Chr6g0459031 | 30.047 | 426 | 269 | 9 | 61 | 470 | 16 | 428 | 3.87e-42 | 155 |
| Msa0035790 | MtrunA17_Chr7g0230011 | 29.060 | 468 | 291 | 12 | 19 | 470 | 1 | 443 | 1.20e-41 | 154 |
| Msa0035790 | MtrunA17_Chr6g0458921 | 29.577 | 426 | 271 | 9 | 61 | 470 | 16 | 428 | 2.39e-41 | 152 |
| Msa0035790 | MtrunA17_Chr3g0122921 | 26.667 | 465 | 283 | 14 | 25 | 470 | 3 | 428 | 1.64e-40 | 150 |
| Msa0035790 | MtrunA17_Chr1g0198541 | 29.837 | 429 | 265 | 12 | 61 | 470 | 26 | 437 | 4.43e-39 | 146 |
| Msa0035790 | MtrunA17_Chr1g0198531 | 28.731 | 449 | 280 | 13 | 41 | 470 | 10 | 437 | 6.17e-39 | 146 |
| Msa0035790 | MtrunA17_Chr3g0077651 | 29.132 | 484 | 291 | 18 | 11 | 470 | 14 | 469 | 7.55e-39 | 146 |
| Msa0035790 | MtrunA17_Chr1g0206871 | 27.233 | 459 | 280 | 11 | 62 | 472 | 18 | 470 | 1.36e-38 | 146 |
| Msa0035790 | MtrunA17_Chr5g0422741 | 28.904 | 429 | 269 | 12 | 61 | 470 | 28 | 439 | 2.87e-37 | 142 |
| Msa0035790 | MtrunA17_Chr6g0459001 | 28.602 | 465 | 265 | 12 | 61 | 470 | 24 | 476 | 7.76e-37 | 141 |
| Msa0035790 | MtrunA17_Chr3g0112971 | 30.000 | 380 | 237 | 9 | 105 | 471 | 72 | 435 | 2.65e-36 | 139 |
| Msa0035790 | MtrunA17_Chr6g0459011 | 29.238 | 407 | 258 | 10 | 75 | 465 | 1 | 393 | 4.19e-36 | 137 |
| Msa0035790 | MtrunA17_Chr3g0143701 | 27.830 | 424 | 267 | 13 | 61 | 456 | 86 | 498 | 1.00e-35 | 139 |
| Msa0035790 | MtrunA17_Chr2g0328081 | 27.465 | 426 | 280 | 9 | 61 | 470 | 16 | 428 | 3.78e-34 | 132 |
| Msa0035790 | MtrunA17_Chr3g0125081 | 26.096 | 479 | 306 | 15 | 35 | 470 | 3 | 476 | 2.25e-31 | 125 |
| Msa0035790 | MtrunA17_Chr1g0159761 | 26.573 | 429 | 269 | 14 | 32 | 421 | 2 | 423 | 4.98e-30 | 122 |
| Msa0035790 | MtrunA17_Chr3g0125091 | 25.361 | 485 | 303 | 17 | 35 | 470 | 3 | 477 | 2.38e-29 | 120 |
| Msa0035790 | MtrunA17_Chr3g0125101 | 25.799 | 438 | 283 | 11 | 70 | 470 | 45 | 477 | 2.38e-29 | 120 |
| Msa0035790 | MtrunA17_Chr4g0037201 | 25.567 | 485 | 296 | 17 | 39 | 472 | 41 | 511 | 5.63e-29 | 119 |
| Msa0035790 | MtrunA17_Chr3g0140761 | 23.992 | 471 | 301 | 13 | 43 | 469 | 21 | 478 | 9.53e-29 | 118 |
| Msa0035790 | MtrunA17_Chr1g0146411 | 26.316 | 399 | 255 | 12 | 70 | 436 | 44 | 435 | 1.07e-28 | 118 |
| Msa0035790 | MtrunA17_Chr3g0130641 | 25.561 | 446 | 276 | 16 | 70 | 472 | 44 | 476 | 1.28e-28 | 118 |
| Msa0035790 | MtrunA17_Chr3g0103231 | 25.954 | 393 | 250 | 11 | 70 | 426 | 34 | 421 | 1.01e-26 | 112 |
| Msa0035790 | MtrunA17_Chr3g0130651 | 26.718 | 393 | 234 | 14 | 70 | 421 | 37 | 416 | 5.70e-26 | 110 |
| Msa0035790 | MtrunA17_Chr1g0146491 | 24.503 | 453 | 287 | 16 | 62 | 469 | 26 | 468 | 6.98e-26 | 110 |
| Msa0035790 | MtrunA17_Chr3g0103221 | 24.419 | 430 | 282 | 13 | 70 | 462 | 41 | 464 | 7.07e-26 | 110 |
| Msa0035790 | MtrunA17_Chr5g0406331 | 28.139 | 462 | 261 | 19 | 51 | 470 | 78 | 510 | 1.37e-25 | 109 |
| Msa0035790 | MtrunA17_Chr8g0384661 | 24.561 | 513 | 326 | 19 | 1 | 472 | 1 | 493 | 1.41e-24 | 106 |
| Msa0035790 | MtrunA17_Chr3g0103211 | 26.718 | 393 | 247 | 12 | 70 | 426 | 34 | 421 | 1.46e-23 | 103 |
| Msa0035790 | MtrunA17_Chr3g0140531 | 23.789 | 475 | 315 | 15 | 33 | 469 | 2 | 467 | 2.56e-22 | 99.4 |
| Msa0035790 | MtrunA17_Chr5g0406351 | 25.144 | 521 | 309 | 21 | 4 | 470 | 39 | 532 | 5.51e-22 | 99.0 |
| Msa0035790 | MtrunA17_Chr5g0447221 | 25.823 | 395 | 248 | 15 | 70 | 426 | 40 | 427 | 1.68e-21 | 97.1 |
| Msa0035790 | MtrunA17_Chr4g0038711 | 24.171 | 422 | 277 | 13 | 69 | 459 | 80 | 489 | 2.28e-21 | 96.7 |
| Msa0035790 | MtrunA17_Chr1g0206851 | 27.132 | 387 | 219 | 12 | 124 | 472 | 19 | 380 | 6.62e-21 | 94.4 |
| Msa0035790 | MtrunA17_Chr3g0103271 | 25.897 | 390 | 245 | 16 | 70 | 421 | 38 | 421 | 6.95e-20 | 92.0 |
| Msa0035790 | MtrunA17_Chr1g0146391 | 24.439 | 446 | 278 | 19 | 70 | 470 | 23 | 454 | 2.46e-19 | 90.5 |
| Msa0035790 | MtrunA17_Chr2g0281341 | 27.645 | 293 | 176 | 10 | 40 | 307 | 77 | 358 | 3.02e-19 | 90.5 |
| Msa0035790 | MtrunA17_Chr2g0293331 | 23.991 | 446 | 280 | 16 | 70 | 470 | 23 | 454 | 1.16e-18 | 88.2 |
| Msa0035790 | MtrunA17_Chr1g0206821 | 26.891 | 238 | 151 | 8 | 62 | 276 | 25 | 262 | 3.12e-17 | 84.3 |
| Msa0035790 | MtrunA17_Chr1g0206821 | 27.803 | 223 | 139 | 4 | 267 | 472 | 313 | 530 | 8.21e-12 | 67.4 |
| Msa0035790 | MtrunA17_Chr1g0146331 | 24.276 | 449 | 276 | 18 | 70 | 470 | 31 | 463 | 4.36e-17 | 83.6 |
| Msa0035790 | MtrunA17_Chr1g0206831 | 25.532 | 329 | 207 | 10 | 168 | 468 | 21 | 339 | 1.18e-16 | 81.3 |
| Msa0035790 | MtrunA17_Chr3g0140541 | 23.134 | 402 | 267 | 9 | 70 | 435 | 36 | 431 | 4.46e-16 | 80.5 |
| Msa0035790 | MtrunA17_Chr4g0037361 | 23.779 | 471 | 297 | 14 | 37 | 471 | 15 | 459 | 7.94e-15 | 76.6 |
| Msa0035790 | MtrunA17_Chr2g0281021 | 41.096 | 73 | 33 | 2 | 403 | 470 | 1 | 68 | 2.52e-13 | 65.1 |
| Msa0035790 | MtrunA17_Chr5g0447231 | 23.724 | 392 | 251 | 14 | 70 | 421 | 36 | 419 | 2.68e-13 | 71.6 |
| Msa0035790 | MtrunA17_Chr5g0402151 | 24.621 | 264 | 157 | 9 | 70 | 317 | 11 | 248 | 1.17e-12 | 68.2 |
| Msa0035790 | MtrunA17_Chr7g0241841 | 23.256 | 430 | 283 | 13 | 17 | 428 | 4 | 404 | 2.62e-12 | 68.9 |
| Msa0035790 | MtrunA17_Chr4g0006031 | 22.925 | 506 | 307 | 19 | 2 | 471 | 5 | 463 | 2.40e-11 | 65.9 |
| Msa0035790 | MtrunA17_Chr5g0436811 | 22.444 | 450 | 271 | 16 | 63 | 471 | 50 | 462 | 6.46e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035790 | AT1G08230.2 | 51.810 | 442 | 202 | 2 | 41 | 471 | 9 | 450 | 6.56e-165 | 473 |
| Msa0035790 | AT5G41800.1 | 49.315 | 438 | 210 | 4 | 46 | 472 | 13 | 449 | 4.62e-136 | 400 |
| Msa0035790 | AT1G08230.3 | 51.327 | 339 | 163 | 1 | 135 | 471 | 12 | 350 | 5.13e-124 | 365 |
| Msa0035790 | AT1G08230.4 | 51.672 | 329 | 157 | 1 | 145 | 471 | 3 | 331 | 1.10e-121 | 358 |
| Msa0035790 | AT1G08230.6 | 51.672 | 329 | 157 | 1 | 145 | 471 | 3 | 331 | 1.10e-121 | 358 |
| Msa0035790 | AT1G08230.5 | 51.672 | 329 | 157 | 1 | 145 | 471 | 3 | 331 | 1.10e-121 | 358 |
| Msa0035790 | AT5G40780.1 | 29.741 | 464 | 290 | 11 | 23 | 470 | 3 | 446 | 8.62e-55 | 189 |
| Msa0035790 | AT3G55740.1 | 31.221 | 426 | 265 | 9 | 59 | 471 | 28 | 438 | 7.75e-53 | 184 |
| Msa0035790 | AT2G39890.2 | 30.445 | 427 | 267 | 10 | 59 | 471 | 31 | 441 | 8.05e-51 | 179 |
| Msa0035790 | AT2G39890.1 | 30.445 | 427 | 267 | 10 | 59 | 471 | 31 | 441 | 8.05e-51 | 179 |
| Msa0035790 | AT5G40780.3 | 31.796 | 412 | 251 | 10 | 75 | 470 | 1 | 398 | 8.62e-51 | 177 |
| Msa0035790 | AT5G40780.2 | 31.796 | 412 | 251 | 10 | 75 | 470 | 1 | 398 | 8.62e-51 | 177 |
| Msa0035790 | AT3G55740.2 | 31.726 | 394 | 242 | 8 | 90 | 471 | 4 | 382 | 1.39e-50 | 177 |
| Msa0035790 | AT3G55740.3 | 31.726 | 394 | 242 | 8 | 90 | 471 | 4 | 382 | 1.39e-50 | 177 |
| Msa0035790 | AT2G36590.1 | 32.553 | 427 | 258 | 10 | 59 | 471 | 25 | 435 | 1.99e-50 | 177 |
| Msa0035790 | AT1G48640.1 | 29.505 | 444 | 283 | 11 | 43 | 470 | 24 | 453 | 9.66e-50 | 176 |
| Msa0035790 | AT2G39890.3 | 30.886 | 395 | 244 | 9 | 90 | 471 | 4 | 382 | 1.82e-48 | 171 |
| Msa0035790 | AT1G24400.1 | 28.875 | 471 | 286 | 13 | 19 | 470 | 1 | 441 | 2.63e-45 | 164 |
| Msa0035790 | AT1G61270.1 | 29.371 | 429 | 268 | 11 | 49 | 456 | 23 | 437 | 6.90e-44 | 160 |
| Msa0035790 | AT1G71680.1 | 29.221 | 462 | 290 | 13 | 30 | 470 | 3 | 448 | 1.50e-42 | 157 |
| Msa0035790 | AT1G67640.1 | 29.075 | 454 | 283 | 11 | 42 | 470 | 2 | 441 | 5.40e-39 | 147 |
| Msa0035790 | AT3G01760.1 | 27.578 | 417 | 268 | 10 | 61 | 456 | 33 | 436 | 8.42e-39 | 146 |
| Msa0035790 | AT1G25530.1 | 28.904 | 429 | 267 | 12 | 62 | 470 | 30 | 440 | 1.23e-34 | 135 |
| Msa0035790 | AT1G71680.2 | 28.242 | 347 | 221 | 9 | 30 | 358 | 3 | 339 | 1.66e-34 | 133 |
| Msa0035790 | AT2G36590.2 | 32.877 | 292 | 175 | 6 | 59 | 340 | 25 | 305 | 3.59e-34 | 131 |
| Msa0035790 | AT5G09220.1 | 26.281 | 449 | 273 | 15 | 70 | 472 | 56 | 492 | 7.03e-32 | 128 |
| Msa0035790 | AT1G10010.1 | 26.386 | 451 | 284 | 13 | 62 | 471 | 30 | 473 | 6.37e-30 | 122 |
| Msa0035790 | AT1G10010.2 | 26.386 | 451 | 284 | 13 | 62 | 471 | 31 | 474 | 7.16e-30 | 122 |
| Msa0035790 | AT5G63850.1 | 25.778 | 450 | 274 | 16 | 70 | 472 | 29 | 465 | 9.09e-30 | 121 |
| Msa0035790 | AT1G77380.1 | 25.172 | 437 | 286 | 11 | 70 | 469 | 40 | 472 | 8.80e-28 | 115 |
| Msa0035790 | AT1G58360.1 | 23.542 | 480 | 314 | 14 | 31 | 469 | 13 | 480 | 4.05e-26 | 111 |
| Msa0035790 | AT1G44100.1 | 25.000 | 456 | 275 | 16 | 70 | 472 | 38 | 479 | 2.31e-25 | 108 |
| Msa0035790 | AT5G49630.1 | 25.231 | 432 | 261 | 15 | 35 | 418 | 10 | 427 | 1.09e-22 | 100 |
| Msa0035790 | AT4G35180.1 | 25.117 | 426 | 287 | 13 | 61 | 464 | 59 | 474 | 6.81e-20 | 92.4 |
| Msa0035790 | AT1G47670.1 | 24.565 | 460 | 285 | 17 | 36 | 456 | 69 | 505 | 1.45e-18 | 88.6 |
| Msa0035790 | AT4G35180.2 | 27.273 | 264 | 169 | 8 | 61 | 307 | 59 | 316 | 6.57e-15 | 76.3 |
| Msa0035790 | AT1G77690.1 | 22.738 | 431 | 283 | 12 | 32 | 442 | 18 | 418 | 2.35e-13 | 72.4 |
| Msa0035790 | AT2G21050.1 | 23.434 | 431 | 278 | 13 | 16 | 428 | 2 | 398 | 8.99e-13 | 70.5 |
Find 99 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAACTAACCTGGATTTC+TGG | 0.213258 | 1_1:+64148288 | None:intergenic |
| GTGTTGCTATCTCTGGTTAT+TGG | 0.236584 | 1_1:-64147711 | Msa0035790:CDS |
| CTCCACATATAATGATAAAT+TGG | 0.244397 | 1_1:+64148647 | None:intergenic |
| ATATGCTTTGGGACAGTAAT+TGG | 0.247452 | 1_1:-64148855 | Msa0035790:CDS |
| AAGACTTAAATTAGTTTAGA+TGG | 0.247828 | 1_1:+64150058 | None:intergenic |
| GCCATTCTTTCCAGATATAA+TGG | 0.250563 | 1_1:-64146987 | Msa0035790:CDS |
| GTTGGTTTGGAGGAGTAATT+TGG | 0.258662 | 1_1:-64149569 | Msa0035790:CDS |
| TTCACTCTTCTGGGTTGGTT+TGG | 0.267371 | 1_1:-64149582 | Msa0035790:CDS |
| ATTGAAAACTGTCCTTTCTT+TGG | 0.270053 | 1_1:+64147082 | None:intergenic |
| CCAAACAATGCCATTATATC+TGG | 0.276029 | 1_1:+64146977 | None:intergenic |
| TAAAGCTTCATTGATCCTTC+TGG | 0.278033 | 1_1:+64148670 | None:intergenic |
| TGGAGTTGTAACTATGCTTT+TGG | 0.281191 | 1_1:-64148629 | Msa0035790:CDS |
| ATCTCTGGTTATTGGGCATT+TGG | 0.283481 | 1_1:-64147703 | Msa0035790:CDS |
| CCAAACAAGGCATAATCTAT+TGG | 0.285091 | 1_1:-64146886 | Msa0035790:CDS |
| TGTTGCTATCTCTGGTTATT+GGG | 0.292003 | 1_1:-64147710 | Msa0035790:CDS |
| CCCAGAAGAGTGAATGAAAA+TGG | 0.300763 | 1_1:+64149591 | None:intergenic |
| CCAATAGATTATGCCTTGTT+TGG | 0.304670 | 1_1:+64146886 | None:intergenic |
| GATTCAAATAATTCATTTGT+TGG | 0.306422 | 1_1:+64147118 | None:intergenic |
| CCGAGAGAGTATTCTGTAAA+AGG | 0.306567 | 1_1:-64148387 | Msa0035790:CDS |
| TTCAATTTATCATATGCTTT+GGG | 0.330472 | 1_1:-64148866 | Msa0035790:CDS |
| GTAATTTGGTTGGTCCTTGC+AGG | 0.336273 | 1_1:-64149555 | Msa0035790:CDS |
| CCAGATATAATGGCATTGTT+TGG | 0.340494 | 1_1:-64146977 | Msa0035790:CDS |
| CTTCAATTTATCATATGCTT+TGG | 0.341049 | 1_1:-64148867 | Msa0035790:CDS |
| CTCATCCTTCTTCAAGTCTT+CGG | 0.352088 | 1_1:-64147592 | Msa0035790:CDS |
| ACTCTTCTGGGTTGGTTTGG+AGG | 0.360871 | 1_1:-64149579 | Msa0035790:CDS |
| TTCAAATGGCCTATAATTGC+AGG | 0.361568 | 1_1:+64146705 | None:intergenic |
| TATTGGGTGAATACATTGAT+TGG | 0.369575 | 1_1:-64146869 | Msa0035790:CDS |
| TATTTCAGTGTTGCTATCTC+TGG | 0.372416 | 1_1:-64147718 | Msa0035790:CDS |
| CCAGTTTAGATTCAGAGATA+TGG | 0.379682 | 1_1:-64149463 | Msa0035790:CDS |
| CAAACAAGGCATAATCTATT+GGG | 0.383365 | 1_1:-64146885 | Msa0035790:CDS |
| CCATATCTCTGAATCTAAAC+TGG | 0.388069 | 1_1:+64149463 | None:intergenic |
| CAAAACTATTGCTTCCCAAA+TGG | 0.410549 | 1_1:-64147636 | Msa0035790:CDS |
| CAATTCTTGCTAACTACATT+GGG | 0.412959 | 1_1:-64147663 | Msa0035790:CDS |
| TATACAAGTGATAGTGAAAA+GGG | 0.415951 | 1_1:-64149852 | Msa0035790:CDS |
| GCCATTATATCTGGAAAGAA+TGG | 0.421778 | 1_1:+64146986 | None:intergenic |
| TTTCATTCACTCTTCTGGGT+TGG | 0.422245 | 1_1:-64149587 | Msa0035790:CDS |
| AAGTTTGTTCTTGTTTCTAA+AGG | 0.431928 | 1_1:-64149777 | Msa0035790:intron |
| AAACTGTTTGGTGTCTTCAA+TGG | 0.434041 | 1_1:-64148351 | Msa0035790:CDS |
| TGGGCATTTGGAAATGCATC+TGG | 0.435496 | 1_1:-64147691 | Msa0035790:CDS |
| ACAATTCTTGCTAACTACAT+TGG | 0.436770 | 1_1:-64147664 | Msa0035790:CDS |
| GTAATTGGTGGTCCTCTTGT+GGG | 0.436804 | 1_1:-64148840 | Msa0035790:CDS |
| TCTCATGAAGATAAACTGTT+TGG | 0.440619 | 1_1:-64148363 | Msa0035790:CDS |
| ATATACAAGTGATAGTGAAA+AGG | 0.456820 | 1_1:-64149853 | Msa0035790:CDS |
| TACCAATTTATCATTATATG+TGG | 0.457634 | 1_1:-64148649 | Msa0035790:CDS |
| ATCCTTCTGGATGGTAAAGT+TGG | 0.467861 | 1_1:+64148683 | None:intergenic |
| TTGTTCCAAGGGTGCTCTCT+AGG | 0.470573 | 1_1:-64147051 | Msa0035790:CDS |
| AGTAATTGGTGGTCCTCTTG+TGG | 0.471430 | 1_1:-64148841 | Msa0035790:CDS |
| TAGATTATGCCTTGTTTGGA+AGG | 0.476875 | 1_1:+64146890 | None:intergenic |
| TCATTTGACAACATCTATTG+TGG | 0.482815 | 1_1:-64149634 | Msa0035790:CDS |
| CATTTGACAACATCTATTGT+GGG | 0.484467 | 1_1:-64149633 | Msa0035790:CDS |
| CAATGCGCAATGTTGTTCCA+AGG | 0.494420 | 1_1:-64147063 | Msa0035790:CDS |
| GATTCAGCAAGAAAATAAGA+TGG | 0.496713 | 1_1:-64149904 | Msa0035790:CDS |
| AACTTTGGCACCTCCTGTGA+AGG | 0.500740 | 1_1:-64147791 | Msa0035790:CDS |
| AAGAAGGATGAGTATATTAG+TGG | 0.500852 | 1_1:+64147603 | None:intergenic |
| TGGGATTATTCCAGAAATCC+AGG | 0.501151 | 1_1:-64148298 | Msa0035790:intron |
| AATGGAAGTGTAAGAATCAC+TGG | 0.501324 | 1_1:+64149609 | None:intergenic |
| CCCTATCACAACTAAAATTG+AGG | 0.506614 | 1_1:+64146838 | None:intergenic |
| CATAATTATTTGCTAGCTCA+AGG | 0.512919 | 1_1:-64149973 | Msa0035790:five_prime_UTR |
| GTGAATACATTGATTGGAGG+AGG | 0.520319 | 1_1:-64146863 | Msa0035790:CDS |
| CTCAGGGACGAAAATTCAAA+TGG | 0.522874 | 1_1:+64146691 | None:intergenic |
| ACTTCACCTGAGTTAGATGC+AGG | 0.525979 | 1_1:-64149804 | Msa0035790:CDS |
| ATTGACCTAGAGAGCACCCT+TGG | 0.527945 | 1_1:+64147046 | None:intergenic |
| AATAATCCCACTAGCATATG+TGG | 0.533821 | 1_1:+64148311 | None:intergenic |
| TATCTCAAGGAGTGAAAGGA+TGG | 0.534203 | 1_1:+64148598 | None:intergenic |
| ATTCAGCAAGAAAATAAGAT+GGG | 0.537062 | 1_1:-64149903 | Msa0035790:CDS |
| CTCTGAATCTAAACTGGCGG+CGG | 0.546660 | 1_1:+64149469 | None:intergenic |
| TTAGAACATCATGCTCAACT+TGG | 0.548316 | 1_1:-64149492 | Msa0035790:CDS |
| AGACTCTTTCCTCCCACAAG+AGG | 0.553648 | 1_1:+64148828 | None:intergenic |
| TGGGTGAATACATTGATTGG+AGG | 0.555938 | 1_1:-64146866 | Msa0035790:CDS |
| TGCTTTGGGACAGTAATTGG+TGG | 0.556122 | 1_1:-64148852 | Msa0035790:CDS |
| AATGTATCTCAAGGAGTGAA+AGG | 0.559352 | 1_1:+64148594 | None:intergenic |
| AATGCGCAATGTTGTTCCAA+GGG | 0.561895 | 1_1:-64147062 | Msa0035790:CDS |
| ACTTTCAAGCCTTCCAAACA+AGG | 0.562223 | 1_1:-64146899 | Msa0035790:CDS |
| GTTTGGAGGAGTAATTTGGT+TGG | 0.564814 | 1_1:-64149565 | Msa0035790:CDS |
| AATCAGATTAATGTATCTCA+AGG | 0.567736 | 1_1:+64148585 | None:intergenic |
| GAAACATGTTTGAATGATGA+TGG | 0.569231 | 1_1:+64150082 | None:intergenic |
| TACCAACTTTACCATCCAGA+AGG | 0.580856 | 1_1:-64148685 | Msa0035790:CDS |
| AGCATATGATAAATTGAAGA+GGG | 0.583245 | 1_1:+64148871 | None:intergenic |
| TTGCTACCACATATGCTAGT+GGG | 0.592496 | 1_1:-64148317 | Msa0035790:CDS |
| TTTGCTCCTGCATCTAACTC+AGG | 0.601599 | 1_1:+64149798 | None:intergenic |
| ATTGCTACCACATATGCTAG+TGG | 0.604816 | 1_1:-64148318 | Msa0035790:CDS |
| TATGCAACATTTCTCACCGT+CGG | 0.606735 | 1_1:-64148541 | Msa0035790:CDS |
| TCAATCCGAAGACTTGAAGA+AGG | 0.606882 | 1_1:+64147587 | None:intergenic |
| ACTTTGGCACCTCCTGTGAA+GGG | 0.608006 | 1_1:-64147790 | Msa0035790:CDS |
| ATTGGCAAAATGAAATCTAG+AGG | 0.608137 | 1_1:+64146938 | None:intergenic |
| TCAAATGGCCTATAATTGCA+GGG | 0.609462 | 1_1:+64146706 | None:intergenic |
| AAGCATATGATAAATTGAAG+AGG | 0.610873 | 1_1:+64148870 | None:intergenic |
| GCTTCATTGATCCTTCTGGA+TGG | 0.631067 | 1_1:+64148674 | None:intergenic |
| TGTGGGAGGAAAGAGTCTCA+AGG | 0.646216 | 1_1:-64148823 | Msa0035790:intron |
| TGAATACATTGATTGGAGGA+GGG | 0.653687 | 1_1:-64146862 | Msa0035790:CDS |
| ATACATATGAATCATAACAC+TGG | 0.653980 | 1_1:-64149945 | Msa0035790:exon |
| TCAAGTCTTCGGATTGACTG+CGG | 0.656105 | 1_1:-64147581 | Msa0035790:intron |
| TATCTCTGAATCTAAACTGG+CGG | 0.664050 | 1_1:+64149466 | None:intergenic |
| AGAATGTGATCACTCCTGCA+AGG | 0.671411 | 1_1:+64149541 | None:intergenic |
| ATTGGTGGTCCTCTTGTGGG+AGG | 0.671489 | 1_1:-64148837 | Msa0035790:CDS |
| TTTACAGAATACTCTCTCGG+CGG | 0.727989 | 1_1:+64148390 | None:intergenic |
| ACCGACGTATATCGAGCCGA+CGG | 0.742222 | 1_1:+64148525 | None:intergenic |
| GTAGGATCATGGTTACACTG+TGG | 0.750740 | 1_1:-64149660 | Msa0035790:intron |
| ACCGTCGGCTCGATATACGT+CGG | 0.773213 | 1_1:-64148526 | Msa0035790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTAATTAATTTACTATA+TGG | - | chr1_1:64147094-64147113 | Msa0035790:CDS | 10.0% |
| !! | AATTAATTTACTATATGGTT+TGG | - | chr1_1:64147099-64147118 | Msa0035790:CDS | 15.0% |
| !! | ATAAGCATTACTATATAATA+AGG | + | chr1_1:64149533-64149552 | None:intergenic | 15.0% |
| !!! | GAATTATTTGAATCAATTTT+CGG | - | chr1_1:64149686-64149705 | Msa0035790:intron | 15.0% |
| !!! | ATAATCATTTTTACATATTC+AGG | + | chr1_1:64150044-64150063 | None:intergenic | 15.0% |
| !! | TGAATATGTAAAAATGATTA+TGG | - | chr1_1:64150043-64150062 | Msa0035790:five_prime_UTR | 15.0% |
| !!! | AAGACTTAAATTAGTTTAGA+TGG | + | chr1_1:64146740-64146759 | None:intergenic | 20.0% |
| !!! | AAAGAAAGAAAAGTACTAAA+AGG | + | chr1_1:64147392-64147411 | None:intergenic | 20.0% |
| !!! | TCATTGTTGTTATTAATCAT+TGG | - | chr1_1:64147413-64147432 | Msa0035790:intron | 20.0% |
| !! | TTCAATTTATCATATGCTTT+GGG | - | chr1_1:64147929-64147948 | Msa0035790:intron | 20.0% |
| !! | TACCAATTTATCATTATATG+TGG | - | chr1_1:64148146-64148165 | Msa0035790:intron | 20.0% |
| !!! | AGAATTGATTTTGACATTTT+TGG | - | chr1_1:64148626-64148645 | Msa0035790:CDS | 20.0% |
| !! | AGAGTTTATGTTATATATGT+TGG | - | chr1_1:64149383-64149402 | Msa0035790:intron | 20.0% |
| !! | TTATAACTTGATTATATTGC+AGG | - | chr1_1:64149643-64149662 | Msa0035790:CDS | 20.0% |
| !! | GATTCAAATAATTCATTTGT+TGG | + | chr1_1:64149680-64149699 | None:intergenic | 20.0% |
| !! | GTTATATTGTAAAAAACCAT+TGG | + | chr1_1:64149878-64149897 | None:intergenic | 20.0% |
| ! | ATACATATGAATCATAACAC+TGG | - | chr1_1:64146850-64146869 | Msa0035790:CDS | 25.0% |
| ! | ATTCAGCAAGAAAATAAGAT+GGG | - | chr1_1:64146892-64146911 | Msa0035790:CDS | 25.0% |
| !! | ATATACAAGTGATAGTGAAA+AGG | - | chr1_1:64146942-64146961 | Msa0035790:CDS | 25.0% |
| !! | TATACAAGTGATAGTGAAAA+GGG | - | chr1_1:64146943-64146962 | Msa0035790:CDS | 25.0% |
| !!! | AAGTTTGTTCTTGTTTCTAA+AGG | - | chr1_1:64147018-64147037 | Msa0035790:CDS | 25.0% |
| !! | TTTGGTTGTGTATATTTTGT+AGG | - | chr1_1:64147117-64147136 | Msa0035790:CDS | 25.0% |
| ! | AATATTGTGCTTATATGAGT+AGG | + | chr1_1:64147521-64147540 | None:intergenic | 25.0% |
| ! | GTAACTTAAAGTGACTAAAT+TGG | + | chr1_1:64147566-64147585 | None:intergenic | 25.0% |
| !! | AATTGAGATTGTAGCTTTTA+AGG | - | chr1_1:64147726-64147745 | Msa0035790:CDS | 25.0% |
| !!! | TCTCTAAAATTGTATACAGT+AGG | + | chr1_1:64147758-64147777 | None:intergenic | 25.0% |
| ! | AGCATATGATAAATTGAAGA+GGG | + | chr1_1:64147927-64147946 | None:intergenic | 25.0% |
| ! | AAGCATATGATAAATTGAAG+AGG | + | chr1_1:64147928-64147947 | None:intergenic | 25.0% |
| ! | CTTCAATTTATCATATGCTT+TGG | - | chr1_1:64147928-64147947 | Msa0035790:intron | 25.0% |
| ! | CTCAAGGTAATAACATAAAA+AGG | - | chr1_1:64147988-64148007 | Msa0035790:intron | 25.0% |
| ! | GAAACTATAGTATAAGAATG+TGG | + | chr1_1:64148050-64148069 | None:intergenic | 25.0% |
| ! | CTTATACTATAGTTTCACTA+AGG | - | chr1_1:64148054-64148073 | Msa0035790:intron | 25.0% |
| ! | CTCCACATATAATGATAAAT+TGG | + | chr1_1:64148151-64148170 | None:intergenic | 25.0% |
| ! | AATCAGATTAATGTATCTCA+AGG | + | chr1_1:64148213-64148232 | None:intergenic | 25.0% |
| ! | TAGAGAACAAATGTTGTAAA+TGG | - | chr1_1:64148548-64148567 | Msa0035790:CDS | 25.0% |
| !!! | TTTTGTTTCACTTTATGAAG+AGG | - | chr1_1:64148582-64148601 | Msa0035790:CDS | 25.0% |
| !!! | CACTTTAGAAACAATTTTGA+AGG | + | chr1_1:64148677-64148696 | None:intergenic | 25.0% |
| ! | TTGGTTATTCTAAACTCAAA+AGG | + | chr1_1:64148932-64148951 | None:intergenic | 25.0% |
| ! | ATGTATATGCATAACAGTTT+AGG | + | chr1_1:64149248-64149267 | None:intergenic | 25.0% |
| !! | TCAATTTTGCGATTCAAATT+CGG | - | chr1_1:64149271-64149290 | Msa0035790:intron | 25.0% |
| ! | GAACTTATTTATAGCTTAGT+TGG | - | chr1_1:64149308-64149327 | Msa0035790:intron | 25.0% |
| ! | TAAATGTACATGTTACTGTT+TGG | - | chr1_1:64149346-64149365 | Msa0035790:intron | 25.0% |
| !! | GCTTTATTGAAATAAGCTTA+AGG | + | chr1_1:64149416-64149435 | None:intergenic | 25.0% |
| ! | TTATTTCAATAAAGCTTCGA+TGG | - | chr1_1:64149421-64149440 | Msa0035790:intron | 25.0% |
| ! | TCAAGTTATAATCATTCATC+AGG | + | chr1_1:64149634-64149653 | None:intergenic | 25.0% |
| ! | ATGTAAAAATGATTATGGCA+AGG | - | chr1_1:64150048-64150067 | Msa0035790:five_prime_UTR | 25.0% |
| ! | TGTAAAAATGATTATGGCAA+GGG | - | chr1_1:64150049-64150068 | Msa0035790:five_prime_UTR | 25.0% |
| GAAACATGTTTGAATGATGA+TGG | + | chr1_1:64146716-64146735 | None:intergenic | 30.0% | |
| ! | CATAATTATTTGCTAGCTCA+AGG | - | chr1_1:64146822-64146841 | Msa0035790:CDS | 30.0% |
| GATTCAGCAAGAAAATAAGA+TGG | - | chr1_1:64146891-64146910 | Msa0035790:CDS | 30.0% | |
| ! | GTGTATATTTTGTAGGATCA+TGG | - | chr1_1:64147124-64147143 | Msa0035790:CDS | 30.0% |
| TCATTTGACAACATCTATTG+TGG | - | chr1_1:64147161-64147180 | Msa0035790:intron | 30.0% | |
| CATTTGACAACATCTATTGT+GGG | - | chr1_1:64147162-64147181 | Msa0035790:intron | 30.0% | |
| ! | GATATGGCTAGAGATATTTT+AGG | - | chr1_1:64147348-64147367 | Msa0035790:intron | 30.0% |
| ATATGAGTAGGAATCAAACT+CGG | + | chr1_1:64147509-64147528 | None:intergenic | 30.0% | |
| AAAATTGTATACAGTAGGCA+AGG | + | chr1_1:64147753-64147772 | None:intergenic | 30.0% | |
| ! | ATATAGTATTTTGCCCATCT+TGG | + | chr1_1:64147901-64147920 | None:intergenic | 30.0% |
| AGATGGGCAAAATACTATAT+AGG | - | chr1_1:64147901-64147920 | Msa0035790:intron | 30.0% | |
| GTAAGGAGATAAAAACACAA+TGG | - | chr1_1:64148291-64148310 | Msa0035790:intron | 30.0% | |
| AGATAAAAACACAATGGCAT+TGG | - | chr1_1:64148297-64148316 | Msa0035790:intron | 30.0% | |
| TCTCATGAAGATAAACTGTT+TGG | - | chr1_1:64148432-64148451 | Msa0035790:intron | 30.0% | |
| AAGTTAAAAATCGACTGTAG+AGG | + | chr1_1:64148722-64148741 | None:intergenic | 30.0% | |
| ! | AATTTTGTCTTCTCCAAAAG+TGG | - | chr1_1:64148817-64148836 | Msa0035790:intron | 30.0% |
| AATAATTGTGTTTGGATCTG+CGG | + | chr1_1:64148878-64148897 | None:intergenic | 30.0% | |
| CACAACGAAATAATTGTGTT+TGG | + | chr1_1:64148886-64148905 | None:intergenic | 30.0% | |
| ! | CAATTCTTGTGCAATTTTGT+AGG | - | chr1_1:64148980-64148999 | Msa0035790:intron | 30.0% |
| ACAATTCTTGCTAACTACAT+TGG | - | chr1_1:64149131-64149150 | Msa0035790:intron | 30.0% | |
| CAATTCTTGCTAACTACATT+GGG | - | chr1_1:64149132-64149151 | Msa0035790:intron | 30.0% | |
| AAGAAGGATGAGTATATTAG+TGG | + | chr1_1:64149195-64149214 | None:intergenic | 30.0% | |
| ! | CAATTTTGCGATTCAAATTC+GGG | - | chr1_1:64149272-64149291 | Msa0035790:intron | 30.0% |
| ! | TCCTCTTTGATAATAGACAT+AGG | - | chr1_1:64149463-64149482 | Msa0035790:CDS | 30.0% |
| ACCTATGTCTATTATCAAAG+AGG | + | chr1_1:64149467-64149486 | None:intergenic | 30.0% | |
| ATTGAAAACTGTCCTTTCTT+TGG | + | chr1_1:64149716-64149735 | None:intergenic | 30.0% | |
| ATTGGCAAAATGAAATCTAG+AGG | + | chr1_1:64149860-64149879 | None:intergenic | 30.0% | |
| ! | TCTAGATTTCATTTTGCCAA+TGG | - | chr1_1:64149859-64149878 | Msa0035790:CDS | 30.0% |
| CAAACAAGGCATAATCTATT+GGG | - | chr1_1:64149910-64149929 | Msa0035790:CDS | 30.0% | |
| TATTGGGTGAATACATTGAT+TGG | - | chr1_1:64149926-64149945 | Msa0035790:CDS | 30.0% | |
| !!! | TCCTCAATTTTAGTTGTGAT+AGG | - | chr1_1:64149956-64149975 | Msa0035790:exon | 30.0% |
| !!! | CCTCAATTTTAGTTGTGATA+GGG | - | chr1_1:64149957-64149976 | Msa0035790:exon | 30.0% |
| !!! | CTCAATTTTAGTTGTGATAG+GGG | - | chr1_1:64149958-64149977 | Msa0035790:exon | 30.0% |
| !!! | TCAATTTTAGTTGTGATAGG+GGG | - | chr1_1:64149959-64149978 | Msa0035790:exon | 30.0% |
| ! | AATGGAAGTGTAAGAATCAC+TGG | + | chr1_1:64147189-64147208 | None:intergenic | 35.0% |
| ! | TCCATTTTCATTCACTCTTC+TGG | - | chr1_1:64147203-64147222 | Msa0035790:intron | 35.0% |
| ! | CCATTTTCATTCACTCTTCT+GGG | - | chr1_1:64147204-64147223 | Msa0035790:intron | 35.0% |
| TTAGAACATCATGCTCAACT+TGG | - | chr1_1:64147303-64147322 | Msa0035790:intron | 35.0% | |
| TATCTCTGAATCTAAACTGG+CGG | + | chr1_1:64147332-64147351 | None:intergenic | 35.0% | |
| CCATATCTCTGAATCTAAAC+TGG | + | chr1_1:64147335-64147354 | None:intergenic | 35.0% | |
| CCAGTTTAGATTCAGAGATA+TGG | - | chr1_1:64147332-64147351 | Msa0035790:intron | 35.0% | |
| ! | GACTAAATTGGTGATTCTCT+CGG | + | chr1_1:64147554-64147573 | None:intergenic | 35.0% |
| !! | TGATGCATTGCTTTGTTTGT+TGG | - | chr1_1:64147784-64147803 | Msa0035790:CDS | 35.0% |
| !! | ATTGCTTTGTTTGTTGGACA+CGG | - | chr1_1:64147790-64147809 | Msa0035790:CDS | 35.0% |
| TTGCTTGAAAATGTTGTGAC+AGG | - | chr1_1:64147874-64147893 | Msa0035790:intron | 35.0% | |
| !! | ATATGCTTTGGGACAGTAAT+TGG | - | chr1_1:64147940-64147959 | Msa0035790:intron | 35.0% |
| TAAAGCTTCATTGATCCTTC+TGG | + | chr1_1:64148128-64148147 | None:intergenic | 35.0% | |
| ! | TGGAGTTGTAACTATGCTTT+TGG | - | chr1_1:64148166-64148185 | Msa0035790:intron | 35.0% |
| AATGTATCTCAAGGAGTGAA+AGG | + | chr1_1:64148204-64148223 | None:intergenic | 35.0% | |
| !! | AATTGACTGTGTTGATTGCA+TGG | - | chr1_1:64148355-64148374 | Msa0035790:CDS | 35.0% |
| ! | CCTTTTACAGAATACTCTCT+CGG | + | chr1_1:64148411-64148430 | None:intergenic | 35.0% |
| !! | AAACTGTTTGGTGTCTTCAA+TGG | - | chr1_1:64148444-64148463 | Msa0035790:intron | 35.0% |
| AATAATCCCACTAGCATATG+TGG | + | chr1_1:64148487-64148506 | None:intergenic | 35.0% | |
| AACAAGATGCAAAACTAACC+TGG | + | chr1_1:64148518-64148537 | None:intergenic | 35.0% | |
| GAAGACAAAATTCAGTCTAG+AGG | + | chr1_1:64148809-64148828 | None:intergenic | 35.0% | |
| TGATTCTGGATATGTACGTT+TGG | + | chr1_1:64148845-64148864 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGTAGGCAACTT+TGG | - | chr1_1:64148989-64149008 | Msa0035790:intron | 35.0% |
| ! | TTGAACATTTTTCCCTTCAC+AGG | + | chr1_1:64149020-64149039 | None:intergenic | 35.0% |
| GTGAAGGGAAAAATGTTCAA+AGG | - | chr1_1:64149020-64149039 | Msa0035790:intron | 35.0% | |
| ! | TATTTCAGTGTTGCTATCTC+TGG | - | chr1_1:64149077-64149096 | Msa0035790:intron | 35.0% |
| TGTTGCTATCTCTGGTTATT+GGG | - | chr1_1:64149085-64149104 | Msa0035790:intron | 35.0% | |
| CAAAACTATTGCTTCCCAAA+TGG | - | chr1_1:64149159-64149178 | Msa0035790:intron | 35.0% | |
| GTGGTCAAGAAAAACCATTT+GGG | + | chr1_1:64149176-64149195 | None:intergenic | 35.0% | |
| AGTGGTCAAGAAAAACCATT+TGG | + | chr1_1:64149177-64149196 | None:intergenic | 35.0% | |
| ! | ATTTTCGGAGATCCAAAGAA+AGG | - | chr1_1:64149701-64149720 | Msa0035790:intron | 35.0% |
| GCCATTCTTTCCAGATATAA+TGG | - | chr1_1:64149808-64149827 | Msa0035790:CDS | 35.0% | |
| GCCATTATATCTGGAAAGAA+TGG | + | chr1_1:64149812-64149831 | None:intergenic | 35.0% | |
| CCAAACAATGCCATTATATC+TGG | + | chr1_1:64149821-64149840 | None:intergenic | 35.0% | |
| CCAGATATAATGGCATTGTT+TGG | - | chr1_1:64149818-64149837 | Msa0035790:CDS | 35.0% | |
| !! | TAGATTATGCCTTGTTTGGA+AGG | + | chr1_1:64149908-64149927 | None:intergenic | 35.0% |
| ! | CCAATAGATTATGCCTTGTT+TGG | + | chr1_1:64149912-64149931 | None:intergenic | 35.0% |
| CCAAACAAGGCATAATCTAT+TGG | - | chr1_1:64149909-64149928 | Msa0035790:CDS | 35.0% | |
| ! | TGAATACATTGATTGGAGGA+GGG | - | chr1_1:64149933-64149952 | Msa0035790:CDS | 35.0% |
| CCCTATCACAACTAAAATTG+AGG | + | chr1_1:64149960-64149979 | None:intergenic | 35.0% | |
| ! | TTTTTCGTCCCTGCAATTAT+AGG | - | chr1_1:64150081-64150100 | Msa0035790:five_prime_UTR | 35.0% |
| TCAAATGGCCTATAATTGCA+GGG | + | chr1_1:64150092-64150111 | None:intergenic | 35.0% | |
| TTCAAATGGCCTATAATTGC+AGG | + | chr1_1:64150093-64150112 | None:intergenic | 35.0% | |
| CCCAGAAGAGTGAATGAAAA+TGG | + | chr1_1:64147207-64147226 | None:intergenic | 40.0% | |
| TTTCATTCACTCTTCTGGGT+TGG | - | chr1_1:64147208-64147227 | Msa0035790:intron | 40.0% | |
| !! | GTTGGTTTGGAGGAGTAATT+TGG | - | chr1_1:64147226-64147245 | Msa0035790:intron | 40.0% |
| GTTTGGAGGAGTAATTTGGT+TGG | - | chr1_1:64147230-64147249 | Msa0035790:intron | 40.0% | |
| !! | TGTTTCGAACCTTTGAAGCA+CGG | + | chr1_1:64147846-64147865 | None:intergenic | 40.0% |
| TACCAACTTTACCATCCAGA+AGG | - | chr1_1:64148110-64148129 | Msa0035790:intron | 40.0% | |
| ATCCTTCTGGATGGTAAAGT+TGG | + | chr1_1:64148115-64148134 | None:intergenic | 40.0% | |
| TATCTCAAGGAGTGAAAGGA+TGG | + | chr1_1:64148200-64148219 | None:intergenic | 40.0% | |
| TATGCAACATTTCTCACCGT+CGG | - | chr1_1:64148254-64148273 | Msa0035790:intron | 40.0% | |
| TTTACAGAATACTCTCTCGG+CGG | + | chr1_1:64148408-64148427 | None:intergenic | 40.0% | |
| !! | CCGAGAGAGTATTCTGTAAA+AGG | - | chr1_1:64148408-64148427 | Msa0035790:CDS | 40.0% |
| ATTGCTACCACATATGCTAG+TGG | - | chr1_1:64148477-64148496 | Msa0035790:intron | 40.0% | |
| TTGCTACCACATATGCTAGT+GGG | - | chr1_1:64148478-64148497 | Msa0035790:intron | 40.0% | |
| TGGGATTATTCCAGAAATCC+AGG | - | chr1_1:64148497-64148516 | Msa0035790:intron | 40.0% | |
| GCAAAACTAACCTGGATTTC+TGG | + | chr1_1:64148510-64148529 | None:intergenic | 40.0% | |
| !! | TGTACGTTTGGTTCCACTTT+TGG | + | chr1_1:64148833-64148852 | None:intergenic | 40.0% |
| AGTCACTTGACATGTGCATT+TGG | + | chr1_1:64148951-64148970 | None:intergenic | 40.0% | |
| ! | AACATTTTTCCCTTCACAGG+AGG | + | chr1_1:64149017-64149036 | None:intergenic | 40.0% |
| ! | GTGTTGCTATCTCTGGTTAT+TGG | - | chr1_1:64149084-64149103 | Msa0035790:intron | 40.0% |
| ATCTCTGGTTATTGGGCATT+TGG | - | chr1_1:64149092-64149111 | Msa0035790:intron | 40.0% | |
| CTCATCCTTCTTCAAGTCTT+CGG | - | chr1_1:64149203-64149222 | Msa0035790:intron | 40.0% | |
| TCAATCCGAAGACTTGAAGA+AGG | + | chr1_1:64149211-64149230 | None:intergenic | 40.0% | |
| AATGCGCAATGTTGTTCCAA+GGG | - | chr1_1:64149733-64149752 | Msa0035790:intron | 40.0% | |
| CAACATTGCTGCAAAAAGTG+TGG | + | chr1_1:64149789-64149808 | None:intergenic | 40.0% | |
| ACTTTCAAGCCTTCCAAACA+AGG | - | chr1_1:64149896-64149915 | Msa0035790:CDS | 40.0% | |
| ! | TGGGTGAATACATTGATTGG+AGG | - | chr1_1:64149929-64149948 | Msa0035790:CDS | 40.0% |
| ! | GTGAATACATTGATTGGAGG+AGG | - | chr1_1:64149932-64149951 | Msa0035790:CDS | 40.0% |
| ACTTCACCTGAGTTAGATGC+AGG | - | chr1_1:64146991-64147010 | Msa0035790:CDS | 45.0% | |
| TTTGCTCCTGCATCTAACTC+AGG | + | chr1_1:64147000-64147019 | None:intergenic | 45.0% | |
| GTAGGATCATGGTTACACTG+TGG | - | chr1_1:64147135-64147154 | Msa0035790:intron | 45.0% | |
| !! | TTCACTCTTCTGGGTTGGTT+TGG | - | chr1_1:64147213-64147232 | Msa0035790:intron | 45.0% |
| ! | GTAATTTGGTTGGTCCTTGC+AGG | - | chr1_1:64147240-64147259 | Msa0035790:intron | 45.0% |
| AGAATGTGATCACTCCTGCA+AGG | + | chr1_1:64147257-64147276 | None:intergenic | 45.0% | |
| TCATTGGACCACTAGTGCTA+AGG | - | chr1_1:64147429-64147448 | Msa0035790:intron | 45.0% | |
| TAAGGTCTAGCGCAAGTGAT+TGG | - | chr1_1:64147447-64147466 | Msa0035790:intron | 45.0% | |
| GTGATTCTCTCGGTTCAATC+AGG | + | chr1_1:64147544-64147563 | None:intergenic | 45.0% | |
| ! | TTGTTTGTTGGACACGGACA+TGG | - | chr1_1:64147796-64147815 | Msa0035790:CDS | 45.0% |
| ATGTTGTGACAGGACCAAGA+TGG | - | chr1_1:64147884-64147903 | Msa0035790:intron | 45.0% | |
| TGTTGTGACAGGACCAAGAT+GGG | - | chr1_1:64147885-64147904 | Msa0035790:intron | 45.0% | |
| !! | TGCTTTGGGACAGTAATTGG+TGG | - | chr1_1:64147943-64147962 | Msa0035790:intron | 45.0% |
| ! | AGTAATTGGTGGTCCTCTTG+TGG | - | chr1_1:64147954-64147973 | Msa0035790:intron | 45.0% |
| ! | GTAATTGGTGGTCCTCTTGT+GGG | - | chr1_1:64147955-64147974 | Msa0035790:intron | 45.0% |
| GCTTCATTGATCCTTCTGGA+TGG | + | chr1_1:64148124-64148143 | None:intergenic | 45.0% | |
| TTGATTGCATGGTCCAATGC+AGG | - | chr1_1:64148366-64148385 | Msa0035790:CDS | 45.0% | |
| ! | ATCTTTCGAGTGACCTGCAT+TGG | + | chr1_1:64148382-64148401 | None:intergenic | 45.0% |
| ! | GCGGTGACAAAAACTGATTC+TGG | + | chr1_1:64148859-64148878 | None:intergenic | 45.0% |
| TGGGCATTTGGAAATGCATC+TGG | - | chr1_1:64149104-64149123 | Msa0035790:intron | 45.0% | |
| TCAAGTCTTCGGATTGACTG+CGG | - | chr1_1:64149214-64149233 | Msa0035790:intron | 45.0% | |
| TTGCGATTCAAATTCGGGTG+CGG | - | chr1_1:64149277-64149296 | Msa0035790:intron | 45.0% | |
| CAATGCGCAATGTTGTTCCA+AGG | - | chr1_1:64149732-64149751 | Msa0035790:intron | 45.0% | |
| !! | ACTCTTCTGGGTTGGTTTGG+AGG | - | chr1_1:64147216-64147235 | Msa0035790:intron | 50.0% |
| CTCTGAATCTAAACTGGCGG+CGG | + | chr1_1:64147329-64147348 | None:intergenic | 50.0% | |
| AGACTCTTTCCTCCCACAAG+AGG | + | chr1_1:64147970-64147989 | None:intergenic | 50.0% | |
| TGTGGGAGGAAAGAGTCTCA+AGG | - | chr1_1:64147972-64147991 | Msa0035790:intron | 50.0% | |
| AACTTTGGCACCTCCTGTGA+AGG | - | chr1_1:64149004-64149023 | Msa0035790:intron | 50.0% | |
| ACTTTGGCACCTCCTGTGAA+GGG | - | chr1_1:64149005-64149024 | Msa0035790:intron | 50.0% | |
| TGCGATTCAAATTCGGGTGC+GGG | - | chr1_1:64149278-64149297 | Msa0035790:intron | 50.0% | |
| !! | TTGTTCCAAGGGTGCTCTCT+AGG | - | chr1_1:64149744-64149763 | Msa0035790:intron | 50.0% |
| !! | ATTGACCTAGAGAGCACCCT+TGG | + | chr1_1:64149752-64149771 | None:intergenic | 50.0% |
| GCGCTAGACCTTAGCACTAG+TGG | + | chr1_1:64147440-64147459 | None:intergenic | 55.0% | |
| !! | GCACGGACACCTCTGGAATT+AGG | + | chr1_1:64147829-64147848 | None:intergenic | 55.0% |
| !! | CTTTGAAGCACGGACACCTC+TGG | + | chr1_1:64147836-64147855 | None:intergenic | 55.0% |
| !! | CAGAGGTGTCCGTGCTTCAA+AGG | - | chr1_1:64147834-64147853 | Msa0035790:intron | 55.0% |
| ! | ATTGGTGGTCCTCTTGTGGG+AGG | - | chr1_1:64147958-64147977 | Msa0035790:intron | 55.0% |
| !! | ACCGTCGGCTCGATATACGT+CGG | - | chr1_1:64148269-64148288 | Msa0035790:intron | 55.0% |
| ACCGACGTATATCGAGCCGA+CGG | + | chr1_1:64148273-64148292 | None:intergenic | 55.0% | |
| CGGCTCGATATACGTCGGTA+AGG | - | chr1_1:64148274-64148293 | Msa0035790:intron | 55.0% | |
| GGCGACACGCCTAATTCCAG+AGG | - | chr1_1:64147817-64147836 | Msa0035790:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64146699 | 64150118 | 64146699 | ID=Msa0035790;Name=Msa0035790 |
| chr1_1 | mRNA | 64146699 | 64150118 | 64146699 | ID=Msa0035790-mRNA-1;Parent=Msa0035790;Name=Msa0035790-mRNA-1;_AED=0.13;_eAED=0.13;_QI=157|0.83|0.85|1|1|1|7|73|472 |
| chr1_1 | exon | 64146699 | 64147152 | 64146699 | ID=Msa0035790-mRNA-1:exon:20508;Parent=Msa0035790-mRNA-1 |
| chr1_1 | exon | 64147582 | 64147815 | 64147582 | ID=Msa0035790-mRNA-1:exon:20507;Parent=Msa0035790-mRNA-1 |
| chr1_1 | exon | 64148299 | 64148429 | 64148299 | ID=Msa0035790-mRNA-1:exon:20506;Parent=Msa0035790-mRNA-1 |
| chr1_1 | exon | 64148527 | 64148713 | 64148527 | ID=Msa0035790-mRNA-1:exon:20505;Parent=Msa0035790-mRNA-1 |
| chr1_1 | exon | 64148824 | 64148894 | 64148824 | ID=Msa0035790-mRNA-1:exon:20504;Parent=Msa0035790-mRNA-1 |
| chr1_1 | exon | 64149448 | 64149678 | 64149448 | ID=Msa0035790-mRNA-1:exon:20503;Parent=Msa0035790-mRNA-1 |
| chr1_1 | exon | 64149778 | 64150118 | 64149778 | ID=Msa0035790-mRNA-1:exon:20502;Parent=Msa0035790-mRNA-1 |
| chr1_1 | five_prime_UTR | 64149962 | 64150118 | 64149962 | ID=Msa0035790-mRNA-1:five_prime_utr;Parent=Msa0035790-mRNA-1 |
| chr1_1 | CDS | 64149778 | 64149961 | 64149778 | ID=Msa0035790-mRNA-1:cds;Parent=Msa0035790-mRNA-1 |
| chr1_1 | CDS | 64149448 | 64149678 | 64149448 | ID=Msa0035790-mRNA-1:cds;Parent=Msa0035790-mRNA-1 |
| chr1_1 | CDS | 64148824 | 64148894 | 64148824 | ID=Msa0035790-mRNA-1:cds;Parent=Msa0035790-mRNA-1 |
| chr1_1 | CDS | 64148527 | 64148713 | 64148527 | ID=Msa0035790-mRNA-1:cds;Parent=Msa0035790-mRNA-1 |
| chr1_1 | CDS | 64148299 | 64148429 | 64148299 | ID=Msa0035790-mRNA-1:cds;Parent=Msa0035790-mRNA-1 |
| chr1_1 | CDS | 64147582 | 64147815 | 64147582 | ID=Msa0035790-mRNA-1:cds;Parent=Msa0035790-mRNA-1 |
| chr1_1 | CDS | 64146772 | 64147152 | 64146772 | ID=Msa0035790-mRNA-1:cds;Parent=Msa0035790-mRNA-1 |
| chr1_1 | three_prime_UTR | 64146699 | 64146771 | 64146699 | ID=Msa0035790-mRNA-1:three_prime_utr;Parent=Msa0035790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
