AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397190 MtrunA17_Chr2g0331771 91.246 297 26 0 1 297 140 436 0.0 537
Msa1397190 MtrunA17_Chr2g0331771 92.537 67 5 0 216 282 17 83 9.61e-35 130
Msa1397190 MtrunA17_Chr4g0004571 62.081 298 109 4 1 297 1 295 5.67e-135 384
Msa1397190 MtrunA17_Chr8g0366791 36.213 301 173 6 9 294 1 297 3.86e-47 160
Msa1397190 MtrunA17_Chr5g0411411 33.887 301 180 6 9 294 1 297 1.76e-44 153
Msa1397190 MtrunA17_Chr4g0046981 28.328 293 195 5 15 294 10 300 1.58e-28 111
Msa1397190 MtrunA17_Chr8g0385571 29.242 277 188 4 15 288 225 496 5.04e-27 110
Msa1397190 MtrunA17_Chr8g0385571 29.688 192 118 7 14 196 319 502 8.13e-15 74.3
Msa1397190 MtrunA17_Chr3g0131501 26.429 280 198 4 12 288 200 474 1.05e-23 100
Msa1397190 MtrunA17_Chr3g0131501 28.814 177 116 3 93 269 190 356 1.15e-13 70.9
Msa1397190 MtrunA17_Chr4g0028531 31.734 271 163 9 18 275 23 284 3.98e-23 97.1
Msa1397190 MtrunA17_Chr1g0201361 30.038 263 148 9 18 274 52 284 5.69e-23 96.3
Msa1397190 MtrunA17_Chr6g0463351 29.286 280 140 8 32 286 82 328 4.56e-22 94.7
Msa1397190 MtrunA17_Chr7g0252401 27.083 288 189 7 15 294 205 479 5.36e-22 95.5
Msa1397190 MtrunA17_Chr7g0252401 23.232 198 136 5 5 196 292 479 8.00e-12 65.5
Msa1397190 MtrunA17_Chr1g0196921 23.735 257 180 5 30 275 27 278 1.38e-20 89.7
Msa1397190 MtrunA17_Chr1g0196921 27.976 168 111 3 126 288 30 192 7.52e-13 67.8
Msa1397190 MtrunA17_Chr3g0137941 30.270 185 117 3 104 288 117 289 9.41e-20 88.6
Msa1397190 MtrunA17_Chr3g0137941 23.077 286 208 5 15 297 120 396 4.01e-15 75.1
Msa1397190 MtrunA17_Chr7g0240341 33.511 188 115 5 112 292 28 212 1.35e-19 87.0
Msa1397190 MtrunA17_Chr7g0240341 24.453 274 179 8 16 269 24 289 1.13e-13 70.5
Msa1397190 MtrunA17_Chr8g0383321 29.433 282 164 10 23 297 55 308 1.38e-19 87.0
Msa1397190 MtrunA17_Chr8g0386871 29.893 281 160 10 23 288 323 581 3.81e-19 87.4
Msa1397190 MtrunA17_Chr1g0149111 29.213 178 115 2 111 288 140 306 6.00e-19 86.3
Msa1397190 MtrunA17_Chr1g0149111 25.338 296 197 9 9 295 131 411 1.58e-14 73.6
Msa1397190 MtrunA17_Chr3g0135861 25.253 297 195 7 15 289 33 324 1.28e-18 84.7
Msa1397190 MtrunA17_Chr4g0063561 28.902 173 112 4 102 274 116 277 5.29e-18 83.6
Msa1397190 MtrunA17_Chr4g0063561 23.509 285 208 4 15 297 121 397 2.55e-16 78.6
Msa1397190 MtrunA17_Chr7g0269701 34.826 201 119 5 97 288 3 200 9.52e-18 82.0
Msa1397190 MtrunA17_Chr7g0269701 26.990 289 193 8 23 297 25 309 6.97e-17 79.3
Msa1397190 MtrunA17_Chr6g0455381 23.232 297 202 8 19 297 21 309 1.50e-17 81.6
Msa1397190 MtrunA17_Chr6g0455381 29.101 189 120 7 114 294 19 201 1.22e-13 70.1
Msa1397190 MtrunA17_Chr6g0455381 29.885 174 97 7 18 172 115 282 4.06e-11 62.8
Msa1397190 MtrunA17_Chr4g0008061 24.818 274 179 7 12 269 10 272 3.83e-17 80.1
Msa1397190 MtrunA17_Chr4g0008061 27.647 170 115 3 126 288 31 199 3.33e-11 62.8
Msa1397190 MtrunA17_Chr6g0488081 31.373 204 121 4 97 288 7 203 5.05e-17 79.7
Msa1397190 MtrunA17_Chr6g0488081 23.022 278 194 6 13 275 15 287 3.63e-15 74.7
Msa1397190 MtrunA17_Chr8g0378951 25.806 279 189 6 15 284 19 288 9.41e-17 79.0
Msa1397190 MtrunA17_Chr8g0378951 26.087 184 121 3 113 292 24 196 6.40e-12 65.1
Msa1397190 MtrunA17_Chr5g0431531 27.969 261 166 6 18 268 40 288 1.35e-16 79.0
Msa1397190 MtrunA17_Chr5g0431531 28.125 224 142 5 74 294 5 212 5.11e-16 77.0
Msa1397190 MtrunA17_Chr7g0241521 23.881 268 179 6 17 269 17 274 7.17e-16 76.6
Msa1397190 MtrunA17_Chr1g0195101 27.208 283 175 9 33 296 35 305 1.57e-15 75.5
Msa1397190 MtrunA17_Chr8g0343381 24.585 301 191 7 32 297 48 347 2.34e-15 75.5
Msa1397190 MtrunA17_Chr5g0423111 27.178 287 168 10 33 295 37 306 2.46e-15 75.5
Msa1397190 MtrunA17_Chr5g0423111 33.333 171 101 6 123 288 34 196 2.99e-12 66.2
Msa1397190 MtrunA17_Chr5g0396801 31.250 160 98 4 116 268 44 198 3.11e-15 75.1
Msa1397190 MtrunA17_Chr5g0396801 24.430 307 191 9 15 289 36 333 4.98e-14 71.6
Msa1397190 MtrunA17_Chr8g0367641 28.041 296 168 12 17 275 6 293 4.98e-15 74.3
Msa1397190 MtrunA17_Chr8g0347451 30.818 159 100 4 116 268 57 211 5.29e-15 74.3
Msa1397190 MtrunA17_Chr8g0347451 23.642 313 208 9 5 289 39 348 2.93e-13 69.3
Msa1397190 MtrunA17_Chr5g0436041 29.518 166 108 3 103 260 24 188 8.45e-15 73.6
Msa1397190 MtrunA17_Chr3g0103681 24.567 289 192 7 12 284 10 288 1.51e-14 72.8
Msa1397190 MtrunA17_Chr7g0219891 22.884 319 212 12 3 297 5 313 1.52e-14 72.8
Msa1397190 MtrunA17_Chr2g0293621 26.154 195 133 3 110 296 130 321 3.33e-14 72.0
Msa1397190 MtrunA17_Chr3g0088301 24.915 293 202 7 16 295 92 379 3.93e-14 72.0
Msa1397190 MtrunA17_Chr3g0086811 26.132 287 172 9 15 268 26 305 9.18e-14 70.9
Msa1397190 MtrunA17_Chr3g0086811 29.570 186 101 5 113 275 31 209 6.69e-12 65.5
Msa1397190 MtrunA17_Chr2g0328891 26.786 168 118 3 122 288 183 346 9.36e-14 70.9
Msa1397190 MtrunA17_Chr5g0412401 26.510 298 177 10 17 275 6 300 1.00e-13 70.5
Msa1397190 MtrunA17_Chr8g0352031 30.657 137 91 2 152 288 217 349 3.98e-13 68.9
Msa1397190 MtrunA17_Chr1g0196161 29.677 155 99 4 116 268 3 149 9.59e-13 65.5
Msa1397190 MtrunA17_Chr2g0296061 25.758 198 130 5 17 197 128 325 1.54e-12 67.0
Msa1397190 MtrunA17_Chr2g0296061 22.436 312 194 9 19 290 17 320 4.07e-11 62.8
Msa1397190 MtrunA17_Chr4g0051841 25.417 240 158 6 17 243 29 260 4.18e-12 65.9
Msa1397190 MtrunA17_Chr3g0133111 28.495 186 107 6 126 288 22 204 5.80e-12 65.1
Msa1397190 MtrunA17_Chr3g0133111 23.418 316 202 8 15 297 4 312 6.67e-12 65.1
Msa1397190 MtrunA17_Chr4g0067231 27.513 189 119 4 104 275 4 191 8.66e-12 64.7
Msa1397190 MtrunA17_Chr4g0067231 23.737 198 134 4 17 197 129 326 6.85e-11 62.0
Msa1397190 MtrunA17_Chr8g0393031 24.254 268 182 7 24 274 22 285 9.86e-12 64.7
Msa1397190 MtrunA17_Chr8g0372531 31.892 185 100 9 124 296 28 198 2.22e-11 63.5
Msa1397190 MtrunA17_Chr4g0040341 27.778 144 100 2 145 288 216 355 6.88e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397190 AT1G79900.1 59.732 298 107 4 1 297 1 286 4.80e-111 323
Msa1397190 AT5G46800.2 33.663 303 179 7 10 294 1 299 1.87e-42 148
Msa1397190 AT5G46800.3 33.663 303 179 7 10 294 1 299 1.87e-42 148
Msa1397190 AT5G46800.1 33.663 303 179 7 10 294 1 299 1.87e-42 148
Msa1397190 AT2G33820.1 28.669 293 194 5 15 294 16 306 5.12e-32 121
Msa1397190 AT2G33820.3 27.907 301 194 6 15 294 16 314 3.20e-29 114
Msa1397190 AT1G34065.2 32.075 265 142 9 13 270 71 304 3.76e-24 100
Msa1397190 AT1G34065.1 32.075 265 142 9 13 270 78 311 3.97e-24 100
Msa1397190 AT2G33820.2 29.333 225 151 4 76 294 3 225 3.63e-23 95.5
Msa1397190 AT5G19760.1 28.674 279 181 6 15 284 16 285 3.12e-22 94.4
Msa1397190 AT5G19760.1 26.562 192 120 4 113 297 21 198 1.69e-13 70.1
Msa1397190 AT4G32400.1 33.516 182 109 3 111 292 115 284 4.00e-22 95.5
Msa1397190 AT4G32400.1 25.952 289 196 8 15 297 112 388 9.44e-19 85.9
Msa1397190 AT5G01340.1 29.478 268 174 7 18 275 18 280 6.47e-22 94.0
Msa1397190 AT2G33820.4 27.679 224 148 4 15 225 16 238 1.54e-21 92.0
Msa1397190 AT2G33820.4 27.807 187 119 6 111 288 19 198 3.48e-11 62.8
Msa1397190 AT4G39460.2 29.123 285 170 10 17 297 58 314 5.67e-21 91.7
Msa1397190 AT4G39460.1 29.123 285 170 10 17 297 58 314 5.67e-21 91.7
Msa1397190 AT4G39460.3 29.123 285 170 10 17 297 58 314 5.67e-21 91.7
Msa1397190 AT3G54110.1 26.471 272 177 7 12 269 10 272 4.61e-20 88.6
Msa1397190 AT3G54110.1 27.933 179 122 3 116 288 21 198 1.70e-12 67.0
Msa1397190 AT4G11440.1 28.028 289 174 8 15 288 328 597 7.35e-20 90.1
Msa1397190 AT4G11440.2 28.028 289 174 8 15 288 328 597 7.35e-20 90.1
Msa1397190 AT3G55640.2 32.738 168 106 3 112 274 41 206 5.57e-19 84.7
Msa1397190 AT3G55640.3 32.738 168 106 3 112 274 41 206 5.57e-19 84.7
Msa1397190 AT1G14140.1 24.907 269 161 9 31 275 30 281 1.07e-18 84.7
Msa1397190 AT4G03115.1 27.237 257 157 8 31 275 52 290 1.28e-18 84.7
Msa1397190 AT4G03115.3 27.237 257 157 8 31 275 84 322 1.35e-18 85.1
Msa1397190 AT3G55640.1 32.738 168 106 3 112 274 41 206 2.27e-18 84.3
Msa1397190 AT3G55640.1 32.474 194 123 6 1 190 130 319 2.43e-16 78.6
Msa1397190 AT3G55640.1 26.545 275 170 10 16 269 37 300 6.45e-15 74.3
Msa1397190 AT3G55640.4 32.738 168 106 3 112 274 41 206 2.27e-18 84.3
Msa1397190 AT3G55640.4 32.474 194 123 6 1 190 130 319 2.43e-16 78.6
Msa1397190 AT3G55640.4 26.545 275 170 10 16 269 37 300 6.45e-15 74.3
Msa1397190 AT5G51050.1 24.735 283 198 7 17 294 223 495 5.81e-18 84.3
Msa1397190 AT5G51050.1 30.769 169 107 3 108 274 221 381 1.39e-13 71.2
Msa1397190 AT4G03115.5 27.119 236 148 6 46 275 2 219 9.52e-18 81.3
Msa1397190 AT4G03115.6 30.233 172 106 4 106 275 68 227 1.48e-17 80.9
Msa1397190 AT4G26180.2 29.442 197 121 3 104 288 15 205 2.95e-17 80.5
Msa1397190 AT4G26180.2 22.300 287 193 10 5 269 6 284 2.93e-13 69.3
Msa1397190 AT4G26180.1 29.442 197 121 3 104 288 15 205 5.20e-17 80.5
Msa1397190 AT4G26180.1 21.498 307 211 10 5 289 6 304 3.25e-13 69.3
Msa1397190 AT3G53940.2 30.890 191 112 4 111 289 74 256 7.86e-17 79.3
Msa1397190 AT1G74240.1 28.975 283 166 8 15 268 34 310 8.31e-17 80.1
Msa1397190 AT2G37890.1 26.354 277 170 10 15 269 43 307 8.33e-17 79.7
Msa1397190 AT2G37890.1 29.907 214 135 5 68 274 8 213 1.62e-15 76.3
Msa1397190 AT2G37890.1 28.649 185 125 4 16 196 151 332 4.62e-14 72.0
Msa1397190 AT4G01100.1 31.111 180 114 3 95 268 27 202 1.19e-16 79.7
Msa1397190 AT4G01100.1 25.083 303 196 9 15 289 40 339 2.49e-14 72.8
Msa1397190 AT3G53940.1 31.053 190 111 4 111 288 74 255 2.18e-16 79.0
Msa1397190 AT3G53940.1 25.182 274 177 9 15 269 71 335 1.79e-13 70.5
Msa1397190 AT3G53940.1 28.571 189 120 5 16 196 179 360 4.91e-13 69.3
Msa1397190 AT1G25380.1 27.737 274 178 8 33 292 37 304 3.31e-16 78.6
Msa1397190 AT1G25380.2 27.737 274 178 8 33 292 37 304 3.31e-16 78.6
Msa1397190 AT4G01100.2 28.866 194 114 3 95 268 27 216 4.50e-16 78.2
Msa1397190 AT4G01100.2 24.534 322 198 10 10 289 35 353 6.70e-14 71.6
Msa1397190 AT5G61810.2 25.182 274 191 6 17 288 65 326 4.62e-16 77.8
Msa1397190 AT1G07030.1 27.113 284 164 8 1 268 34 290 5.61e-16 77.4
Msa1397190 AT4G01100.3 33.113 151 91 3 124 268 6 152 8.96e-16 76.6
Msa1397190 AT4G01100.3 24.561 285 184 8 33 289 8 289 4.01e-13 68.9
Msa1397190 AT5G58970.1 24.028 283 190 7 17 284 16 288 1.03e-15 76.3
Msa1397190 AT5G61810.1 25.182 274 191 6 17 288 208 469 1.58e-15 77.0
Msa1397190 AT2G30160.1 25.430 291 163 8 1 268 36 295 1.91e-15 75.9
Msa1397190 AT5G09470.1 27.232 224 152 4 55 275 98 313 2.08e-15 75.9
Msa1397190 AT5G15640.1 23.585 318 214 12 3 297 12 323 6.43e-15 74.3
Msa1397190 AT2G47490.1 28.159 277 181 8 33 297 33 303 7.66e-15 73.9
Msa1397190 AT5G15640.2 23.607 305 205 11 15 297 18 316 1.10e-14 73.6
Msa1397190 AT5G42130.1 25.448 279 178 8 33 297 134 396 3.29e-14 72.8
Msa1397190 AT5G07320.1 24.138 261 184 6 30 288 222 470 3.37e-14 73.2
Msa1397190 AT4G24570.1 23.232 297 183 6 15 275 4 291 5.79e-14 71.6
Msa1397190 AT4G24570.1 29.688 192 103 4 126 288 22 210 7.56e-13 68.2
Msa1397190 AT1G72820.1 26.006 323 205 10 7 297 21 341 9.45e-14 71.2
Msa1397190 AT1G72820.2 26.006 323 205 10 7 297 21 341 9.45e-14 71.2
Msa1397190 AT1G74240.2 28.571 266 155 8 32 268 3 262 1.19e-13 70.5
Msa1397190 AT3G08580.2 29.927 137 92 2 152 288 233 365 3.02e-13 69.7
Msa1397190 AT3G08580.1 29.927 137 92 2 152 288 233 365 3.02e-13 69.7
Msa1397190 AT5G26200.1 24.026 308 205 9 4 288 30 331 3.37e-13 69.3
Msa1397190 AT5G13490.1 29.861 144 97 2 145 288 230 369 3.59e-13 69.7
Msa1397190 AT5G13490.2 29.861 144 97 2 145 288 230 369 3.59e-13 69.7
Msa1397190 AT1G14560.2 22.593 270 183 5 33 281 43 307 1.03e-12 67.8
Msa1397190 AT1G14560.1 22.727 264 178 5 33 275 43 301 1.32e-12 67.8
Msa1397190 AT5G17400.1 21.245 273 197 5 16 274 13 281 1.72e-12 67.0
Msa1397190 AT5G48970.2 25.871 201 129 5 17 197 64 264 2.71e-12 66.2
Msa1397190 AT5G48970.1 25.871 201 129 5 17 197 135 335 6.99e-12 65.5
Msa1397190 AT5G48970.1 26.471 204 135 5 105 296 18 218 9.71e-11 62.0
Msa1397190 AT2G39970.1 21.017 295 187 7 31 284 22 311 7.79e-12 65.5
Msa1397190 AT4G28390.1 28.467 137 94 2 152 288 231 363 1.28e-11 65.1
Msa1397190 AT4G28390.2 28.467 137 94 2 152 288 231 363 1.28e-11 65.1
Msa1397190 AT5G66380.1 27.181 298 186 10 19 294 12 300 2.00e-11 63.9
Msa1397190 AT2G26360.1 25.287 261 171 10 12 268 110 350 3.03e-11 63.9

Find 74 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCTTTGATTATCTTTA+AGG 0.014724 tig0022138:+26932 None:intergenic
AAATGTTGTGATGAACAATT+TGG 0.242168 tig0022138:-29000 Msa1397190:CDS
GAGAAGAGAGAATGGAGTTT+TGG 0.274701 tig0022138:-29028 Msa1397190:exon
GAGTTTGTAGCTGGTGGATT+TGG 0.292105 tig0022138:-28972 Msa1397190:CDS
CGCGGCATTTATCGAGGATT+TGG 0.311079 tig0022138:-27197 Msa1397190:CDS
CCTGCTCTAGCCTTATACTT+TGG 0.317029 tig0022138:-27152 Msa1397190:CDS
CTCATATGTCCCAAAGTATA+AGG 0.332931 tig0022138:+27142 None:intergenic
ATTGTCCTATGGAGAGGTTT+AGG 0.345579 tig0022138:-26903 Msa1397190:CDS
CAACATCGTTAGAAATTTGT+TGG 0.348347 tig0022138:-28868 Msa1397190:CDS
CTGCTTATCAAGTCTCTCTA+AGG 0.354957 tig0022138:-26836 Msa1397190:CDS
TGAGTCTTGCTAAGAACATT+TGG 0.357193 tig0022138:-27235 Msa1397190:CDS
TCCATGGTGAATGTTGCTTT+AGG 0.368395 tig0022138:-27377 Msa1397190:CDS
AATGTTGTGATGAACAATTT+GGG 0.376857 tig0022138:-28999 Msa1397190:CDS
CTGCTCTAGCCTTATACTTT+GGG 0.383027 tig0022138:-27151 Msa1397190:CDS
TTTCTCTTTGATGTAACAAC+AGG 0.399037 tig0022138:-29059 Msa1397190:five_prime_UTR
TTTATCTCCTCAACCATTGA+AGG 0.399256 tig0022138:+26765 None:intergenic
AAAATTGAGAGAAGAGAGAA+TGG 0.403716 tig0022138:-29036 Msa1397190:exon
TCGTGGGATGGCTGTTCCTT+TGG 0.409968 tig0022138:-28820 Msa1397190:CDS
GTTGAAATACAAAGGCATCT+TGG 0.418743 tig0022138:-26961 Msa1397190:CDS
CGTGTCATGCAACAACAATC+TGG 0.425877 tig0022138:-28906 Msa1397190:CDS
GGGAGAGAGTTTGTAGCTGG+TGG 0.429135 tig0022138:-28978 Msa1397190:CDS
CTCCCTTAAGAAAATATTGA+GGG 0.432220 tig0022138:+26659 None:intergenic
TAAAAGCATTACTCCTTCAA+TGG 0.435285 tig0022138:-26778 Msa1397190:three_prime_UTR
GCTGTTCCTTTGGCCTCTGT+TGG 0.447549 tig0022138:-28810 Msa1397190:CDS
CTTGTCTTTATAACATCAGT+AGG 0.452605 tig0022138:+27008 None:intergenic
TTCACATGGACCTCCTTCCA+TGG 0.462240 tig0022138:-27393 Msa1397190:CDS
TTTGTAGCAGGAGGATTAGC+AGG 0.467430 tig0022138:-27056 Msa1397190:CDS
CGTTAGAAATTTGTTGGCTA+AGG 0.470910 tig0022138:-28862 Msa1397190:CDS
CATTACTCCTTCAATGGTTG+AGG 0.474190 tig0022138:-26772 Msa1397190:three_prime_UTR
AATGTTGCTTTAGGAGGACT+TGG 0.477406 tig0022138:-27368 Msa1397190:CDS
TTTGTAGCTGGTGGATTTGG+AGG 0.479219 tig0022138:-28969 Msa1397190:CDS
CAGGGGAGATCAAAATACTT+TGG 0.481107 tig0022138:+27333 None:intergenic
GGTGGATTTGGAGGCACAGC+AGG 0.491842 tig0022138:-28960 Msa1397190:CDS
TTGGGGAGAGAGTTTGTAGC+TGG 0.494346 tig0022138:-28981 Msa1397190:CDS
AGAAATTTGTTGGCTAAGGA+AGG 0.495551 tig0022138:-28858 Msa1397190:CDS
ACTCCCTTAAGAAAATATTG+AGG 0.497391 tig0022138:+26658 None:intergenic
GCTTTAGGAGGACTTGGTGC+AGG 0.499633 tig0022138:-27362 Msa1397190:CDS
TGACAACTTTCTCTGCAACC+AGG 0.506703 tig0022138:+27098 None:intergenic
GTGAGTACTATGTTTGTAGC+AGG 0.516409 tig0022138:-27068 Msa1397190:CDS
TATAATCTCAAGTTATCCAT+TGG 0.519724 tig0022138:-28937 Msa1397190:CDS
ATGGTGAATGTTGCTTTAGG+AGG 0.521494 tig0022138:-27374 Msa1397190:CDS
GACCTACTGCTTTGTATCGT+GGG 0.535570 tig0022138:-28836 Msa1397190:CDS
GGCCCCTCTACTTCTTCACA+TGG 0.536333 tig0022138:-27407 Msa1397190:CDS
TCTTGTGTATAACTTGTGGT+TGG 0.539629 tig0022138:-29083 None:intergenic
ATGAAGGTTCTATTGTCCTA+TGG 0.539984 tig0022138:-26914 Msa1397190:CDS
TACTGCTTTGTATCGTGGGA+TGG 0.540002 tig0022138:-28832 Msa1397190:CDS
GACAACTTTCTCTGCAACCA+GGG 0.546362 tig0022138:+27099 None:intergenic
TTAAAGATAATCAAAGATGA+AGG 0.551996 tig0022138:-26930 Msa1397190:CDS
GATTAGCAGGGATAGCAAGT+TGG 0.552263 tig0022138:-27043 Msa1397190:CDS
CTTAGAGAGACTTGATAAGC+AGG 0.553970 tig0022138:+26837 None:intergenic
GGTTCTATTGTCCTATGGAG+AGG 0.556965 tig0022138:-26909 Msa1397190:CDS
GGACCTACTGCTTTGTATCG+TGG 0.558858 tig0022138:-28837 Msa1397190:CDS
CCAAAGTATAAGGCTAGAGC+AGG 0.559278 tig0022138:+27152 None:intergenic
AGGTCCATGTGAAGAAGTAG+AGG 0.566149 tig0022138:+27403 None:intergenic
TCTTCTTCGTTGAAATACAA+AGG 0.570873 tig0022138:-26969 Msa1397190:CDS
ATGTTCTTAGCAAGACTCAT+GGG 0.580615 tig0022138:+27239 None:intergenic
AAAGCAACATTCACCATGGA+AGG 0.582192 tig0022138:+27380 None:intergenic
AATGTTCTTAGCAAGACTCA+TGG 0.587401 tig0022138:+27238 None:intergenic
GGCCTTCGCGGCATTTATCG+AGG 0.588676 tig0022138:-27203 Msa1397190:CDS
AGTACTATGTTTGTAGCAGG+AGG 0.589645 tig0022138:-27065 Msa1397190:CDS
TTGCTCCTAAACCTCTCCAT+AGG 0.593048 tig0022138:+26898 None:intergenic
ATCCTCGATAAATGCCGCGA+AGG 0.596054 tig0022138:+27201 None:intergenic
GGTCCATGTGAAGAAGTAGA+GGG 0.615402 tig0022138:+27404 None:intergenic
TTGTCTTTATAACATCAGTA+GGG 0.620200 tig0022138:+27009 None:intergenic
TGAAAACCAACAGAGGCCAA+AGG 0.633415 tig0022138:+28804 None:intergenic
ATGACACGAATTGTATCCAA+TGG 0.642830 tig0022138:+28921 None:intergenic
GCAACATTCACCATGGAAGG+AGG 0.658325 tig0022138:+27383 None:intergenic
TTGTAGCAGGAGGATTAGCA+GGG 0.660168 tig0022138:-27055 Msa1397190:CDS
TCCTAAAGCAACATTCACCA+TGG 0.660244 tig0022138:+27376 None:intergenic
ATGTTGTGATGAACAATTTG+GGG 0.663183 tig0022138:-28998 Msa1397190:CDS
ATCCCACGATACAAAGCAGT+AGG 0.668316 tig0022138:+28834 None:intergenic
GTCCATGTGAAGAAGTAGAG+GGG 0.690759 tig0022138:+27405 None:intergenic
CCTAACCTGAAAACCAACAG+AGG 0.709999 tig0022138:+28797 None:intergenic
ACAAGAGAGAAACTTCACCC+TGG 0.733018 tig0022138:-27116 Msa1397190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAATTAAATAAAAAA+AGG + tig0022138:27552-27571 None:intergenic 0.0%
!! TAAATTAATTAAATAAAAAA+AGG + tig0022138:27552-27571 None:intergenic 0.0%
!! TCATATCTAATTTAATATAT+CGG - tig0022138:27455-27474 Msa1397190:CDS 10.0%
!!! TTATATAACTTTTATTTTTG+AGG - tig0022138:27572-27591 Msa1397190:intron 10.0%
!!! TTTCTAAAATGTTTAATAAT+AGG + tig0022138:28034-28053 None:intergenic 10.0%
!! TCATATCTAATTTAATATAT+CGG - tig0022138:27455-27474 Msa1397190:CDS 10.0%
!!! TTATATAACTTTTATTTTTG+AGG - tig0022138:27572-27591 Msa1397190:intron 10.0%
!!! TTTCTAAAATGTTTAATAAT+AGG + tig0022138:28034-28053 None:intergenic 10.0%
!! AAACAAGAAAACAAAAATAA+AGG + tig0022138:27365-27384 None:intergenic 15.0%
!!! ATTAAACATTTTAGAAAGAA+TGG - tig0022138:28037-28056 Msa1397190:intron 15.0%
!! TTGTTGTCATAAAAAAAAAA+TGG + tig0022138:29060-29079 None:intergenic 15.0%
!! AAACAAGAAAACAAAAATAA+AGG + tig0022138:27365-27384 None:intergenic 15.0%
!!! ATTAAACATTTTAGAAAGAA+TGG - tig0022138:28037-28056 Msa1397190:intron 15.0%
!! TTGTTGTCATAAAAAAAAAA+TGG + tig0022138:29060-29079 None:intergenic 15.0%
!! TTATTATAATGAAGGGATTA+AGG + tig0022138:26981-27000 None:intergenic 20.0%
!! ATCAAACAATTCAAATTTAG+TGG - tig0022138:27032-27051 Msa1397190:CDS 20.0%
!! TCAATCACAATTTAAAAACA+AGG + tig0022138:27102-27121 None:intergenic 20.0%
!!! GTTTTTAAATTGTGATTGAA+TGG - tig0022138:27103-27122 Msa1397190:CDS 20.0%
!! GAAAACAAAAATAAAGGAAA+TGG + tig0022138:27359-27378 None:intergenic 20.0%
!! TAAAAAAAGGACAATTCTAT+AGG + tig0022138:27539-27558 None:intergenic 20.0%
!! ATCTAGTTGTTAAAATACTA+CGG - tig0022138:27660-27679 Msa1397190:intron 20.0%
!! AGAAAAATACTATAATTGCA+GGG + tig0022138:28082-28101 None:intergenic 20.0%
!! AAGAAAAATACTATAATTGC+AGG + tig0022138:28083-28102 None:intergenic 20.0%
!! TTCATCTTTGATTATCTTTA+AGG + tig0022138:28810-28829 None:intergenic 20.0%
!! TTAAAGATAATCAAAGATGA+AGG - tig0022138:28809-28828 Msa1397190:CDS 20.0%
!!! ACTTTTTATTGCAATCTTTT+TGG + tig0022138:29003-29022 None:intergenic 20.0%
!! TTATTATAATGAAGGGATTA+AGG + tig0022138:26981-27000 None:intergenic 20.0%
!! ATCAAACAATTCAAATTTAG+TGG - tig0022138:27032-27051 Msa1397190:CDS 20.0%
!! TCAATCACAATTTAAAAACA+AGG + tig0022138:27102-27121 None:intergenic 20.0%
!!! GTTTTTAAATTGTGATTGAA+TGG - tig0022138:27103-27122 Msa1397190:CDS 20.0%
!! GAAAACAAAAATAAAGGAAA+TGG + tig0022138:27359-27378 None:intergenic 20.0%
!! TAAAAAAAGGACAATTCTAT+AGG + tig0022138:27539-27558 None:intergenic 20.0%
!! ATCTAGTTGTTAAAATACTA+CGG - tig0022138:27660-27679 Msa1397190:intron 20.0%
!! AGAAAAATACTATAATTGCA+GGG + tig0022138:28082-28101 None:intergenic 20.0%
!! AAGAAAAATACTATAATTGC+AGG + tig0022138:28083-28102 None:intergenic 20.0%
!! TTCATCTTTGATTATCTTTA+AGG + tig0022138:28810-28829 None:intergenic 20.0%
!! TTAAAGATAATCAAAGATGA+AGG - tig0022138:28809-28828 Msa1397190:CDS 20.0%
!!! ACTTTTTATTGCAATCTTTT+TGG + tig0022138:29003-29022 None:intergenic 20.0%
! AAATGTTGTGATGAACAATT+TGG - tig0022138:26739-26758 Msa1397190:three_prime_UTR 25.0%
! AATGTTGTGATGAACAATTT+GGG - tig0022138:26740-26759 Msa1397190:three_prime_UTR 25.0%
! TATAATCTCAAGTTATCCAT+TGG - tig0022138:26802-26821 Msa1397190:exon 25.0%
! CACTTCGTTATTATAATGAA+GGG + tig0022138:26988-27007 None:intergenic 25.0%
! CTTCATTATAATAACGAAGT+GGG - tig0022138:26987-27006 Msa1397190:CDS 25.0%
! AATTTGATCAAGATTGACTA+TGG + tig0022138:27220-27239 None:intergenic 25.0%
!! GCGCATTTTTAAATCAATTT+TGG - tig0022138:27273-27292 Msa1397190:CDS 25.0%
! GTATCTGAAAAATATGCTAT+TGG + tig0022138:27817-27836 None:intergenic 25.0%
! TTTGTAGAACACATATATGT+TGG + tig0022138:27964-27983 None:intergenic 25.0%
! GCTCATTTGAAAAATACATT+TGG - tig0022138:27992-28011 Msa1397190:intron 25.0%
!!! AATTTTAATCAACTCAACAG+GGG + tig0022138:28426-28445 None:intergenic 25.0%
!!! GAATTTTAATCAACTCAACA+GGG + tig0022138:28427-28446 None:intergenic 25.0%
!! TTAAGTTCTTTTGTAGTTGA+AGG + tig0022138:28451-28470 None:intergenic 25.0%
! TAAGAACATTTGGAAAAATG+AGG - tig0022138:28514-28533 Msa1397190:intron 25.0%
! AAGAACATTTGGAAAAATGA+GGG - tig0022138:28515-28534 Msa1397190:intron 25.0%
! TTGTCTTTATAACATCAGTA+GGG + tig0022138:28733-28752 None:intergenic 25.0%
! TGCAATAAAAAGTTAGTAAG+AGG - tig0022138:29010-29029 Msa1397190:CDS 25.0%
! AAATGTTGTGATGAACAATT+TGG - tig0022138:26739-26758 Msa1397190:three_prime_UTR 25.0%
! AATGTTGTGATGAACAATTT+GGG - tig0022138:26740-26759 Msa1397190:three_prime_UTR 25.0%
! TATAATCTCAAGTTATCCAT+TGG - tig0022138:26802-26821 Msa1397190:exon 25.0%
! CACTTCGTTATTATAATGAA+GGG + tig0022138:26988-27007 None:intergenic 25.0%
! CTTCATTATAATAACGAAGT+GGG - tig0022138:26987-27006 Msa1397190:CDS 25.0%
! AATTTGATCAAGATTGACTA+TGG + tig0022138:27220-27239 None:intergenic 25.0%
!! GCGCATTTTTAAATCAATTT+TGG - tig0022138:27273-27292 Msa1397190:CDS 25.0%
! GTATCTGAAAAATATGCTAT+TGG + tig0022138:27817-27836 None:intergenic 25.0%
! TTTGTAGAACACATATATGT+TGG + tig0022138:27964-27983 None:intergenic 25.0%
! GCTCATTTGAAAAATACATT+TGG - tig0022138:27992-28011 Msa1397190:intron 25.0%
!!! AATTTTAATCAACTCAACAG+GGG + tig0022138:28426-28445 None:intergenic 25.0%
!!! GAATTTTAATCAACTCAACA+GGG + tig0022138:28427-28446 None:intergenic 25.0%
!! TTAAGTTCTTTTGTAGTTGA+AGG + tig0022138:28451-28470 None:intergenic 25.0%
! TAAGAACATTTGGAAAAATG+AGG - tig0022138:28514-28533 Msa1397190:intron 25.0%
! AAGAACATTTGGAAAAATGA+GGG - tig0022138:28515-28534 Msa1397190:intron 25.0%
! TTGTCTTTATAACATCAGTA+GGG + tig0022138:28733-28752 None:intergenic 25.0%
! TGCAATAAAAAGTTAGTAAG+AGG - tig0022138:29010-29029 Msa1397190:CDS 25.0%
TTTCTCTTTGATGTAACAAC+AGG - tig0022138:26680-26699 Msa1397190:three_prime_UTR 30.0%
AAAATTGAGAGAAGAGAGAA+TGG - tig0022138:26703-26722 Msa1397190:three_prime_UTR 30.0%
ATGTTGTGATGAACAATTTG+GGG - tig0022138:26741-26760 Msa1397190:three_prime_UTR 30.0%
CAACATCGTTAGAAATTTGT+TGG - tig0022138:26871-26890 Msa1397190:CDS 30.0%
CCACTTCGTTATTATAATGA+AGG + tig0022138:26989-27008 None:intergenic 30.0%
CCTTCATTATAATAACGAAG+TGG - tig0022138:26986-27005 Msa1397190:CDS 30.0%
GATGTGAATTATTGATGCAA+TGG + tig0022138:27437-27456 None:intergenic 30.0%
GGTAAGATTTATTGATCCAA+CGG - tig0022138:27476-27495 Msa1397190:intron 30.0%
CATAAAATAGTTTCTACCGT+TGG + tig0022138:27495-27514 None:intergenic 30.0%
TTAAAATACTACGGTTCAAG+TGG - tig0022138:27669-27688 Msa1397190:intron 30.0%
CCTAGTAAGAAACTTATAGA+GGG + tig0022138:27773-27792 None:intergenic 30.0%
TCCTAGTAAGAAACTTATAG+AGG + tig0022138:27774-27793 None:intergenic 30.0%
AGTTTCTTACTAGGATAACT+AGG - tig0022138:27779-27798 Msa1397190:intron 30.0%
GTTTCTTACTAGGATAACTA+GGG - tig0022138:27780-27799 Msa1397190:intron 30.0%
! TATGTTGGACAGTGTTTTAT+AGG + tig0022138:27949-27968 None:intergenic 30.0%
TTAACCATTGATGTCATACA+TGG - tig0022138:28165-28184 Msa1397190:intron 30.0%
TATTGTCGCATCAACTTATT+GGG + tig0022138:28215-28234 None:intergenic 30.0%
ATATTGTCGCATCAACTTAT+TGG + tig0022138:28216-28235 None:intergenic 30.0%
!! ACCGTTTTTACAAGAATTGT+TGG - tig0022138:28311-28330 Msa1397190:intron 30.0%
GCCAACAATTCTTGTAAAAA+CGG + tig0022138:28315-28334 None:intergenic 30.0%
!! CGAATTTTAATCAACTCAAC+AGG + tig0022138:28428-28447 None:intergenic 30.0%
CTTGTCTTTATAACATCAGT+AGG + tig0022138:28734-28753 None:intergenic 30.0%
TCTTCTTCGTTGAAATACAA+AGG - tig0022138:28770-28789 Msa1397190:intron 30.0%
!! TAAAAGCATTACTCCTTCAA+TGG - tig0022138:28961-28980 Msa1397190:CDS 30.0%
TTTCTCTTTGATGTAACAAC+AGG - tig0022138:26680-26699 Msa1397190:three_prime_UTR 30.0%
AAAATTGAGAGAAGAGAGAA+TGG - tig0022138:26703-26722 Msa1397190:three_prime_UTR 30.0%
ATGTTGTGATGAACAATTTG+GGG - tig0022138:26741-26760 Msa1397190:three_prime_UTR 30.0%
CAACATCGTTAGAAATTTGT+TGG - tig0022138:26871-26890 Msa1397190:CDS 30.0%
CCACTTCGTTATTATAATGA+AGG + tig0022138:26989-27008 None:intergenic 30.0%
CCTTCATTATAATAACGAAG+TGG - tig0022138:26986-27005 Msa1397190:CDS 30.0%
GATGTGAATTATTGATGCAA+TGG + tig0022138:27437-27456 None:intergenic 30.0%
GGTAAGATTTATTGATCCAA+CGG - tig0022138:27476-27495 Msa1397190:intron 30.0%
CATAAAATAGTTTCTACCGT+TGG + tig0022138:27495-27514 None:intergenic 30.0%
TTAAAATACTACGGTTCAAG+TGG - tig0022138:27669-27688 Msa1397190:intron 30.0%
CCTAGTAAGAAACTTATAGA+GGG + tig0022138:27773-27792 None:intergenic 30.0%
TCCTAGTAAGAAACTTATAG+AGG + tig0022138:27774-27793 None:intergenic 30.0%
AGTTTCTTACTAGGATAACT+AGG - tig0022138:27779-27798 Msa1397190:intron 30.0%
GTTTCTTACTAGGATAACTA+GGG - tig0022138:27780-27799 Msa1397190:intron 30.0%
! TATGTTGGACAGTGTTTTAT+AGG + tig0022138:27949-27968 None:intergenic 30.0%
TTAACCATTGATGTCATACA+TGG - tig0022138:28165-28184 Msa1397190:intron 30.0%
TATTGTCGCATCAACTTATT+GGG + tig0022138:28215-28234 None:intergenic 30.0%
ATATTGTCGCATCAACTTAT+TGG + tig0022138:28216-28235 None:intergenic 30.0%
!! ACCGTTTTTACAAGAATTGT+TGG - tig0022138:28311-28330 Msa1397190:intron 30.0%
GCCAACAATTCTTGTAAAAA+CGG + tig0022138:28315-28334 None:intergenic 30.0%
!! CGAATTTTAATCAACTCAAC+AGG + tig0022138:28428-28447 None:intergenic 30.0%
CTTGTCTTTATAACATCAGT+AGG + tig0022138:28734-28753 None:intergenic 30.0%
TCTTCTTCGTTGAAATACAA+AGG - tig0022138:28770-28789 Msa1397190:intron 30.0%
!! TAAAAGCATTACTCCTTCAA+TGG - tig0022138:28961-28980 Msa1397190:CDS 30.0%
ATGACACGAATTGTATCCAA+TGG + tig0022138:26821-26840 None:intergenic 35.0%
!! CGTTAGAAATTTGTTGGCTA+AGG - tig0022138:26877-26896 Msa1397190:CDS 35.0%
!! AGAAATTTGTTGGCTAAGGA+AGG - tig0022138:26881-26900 Msa1397190:CDS 35.0%
! ACATGCAGTCGATTTAACTT+TGG + tig0022138:27180-27199 None:intergenic 35.0%
TGATCAAGATTGACTATGGT+CGG + tig0022138:27216-27235 None:intergenic 35.0%
TTATTGATGCAATGGTGAAG+TGG + tig0022138:27429-27448 None:intergenic 35.0%
GAGTACTCAAGTTTAATCCT+TGG - tig0022138:27736-27755 Msa1397190:intron 35.0%
AGAAACTTATAGAGGGATCA+GGG + tig0022138:27766-27785 None:intergenic 35.0%
AAGAAACTTATAGAGGGATC+AGG + tig0022138:27767-27786 None:intergenic 35.0%
CCCTCTATAAGTTTCTTACT+AGG - tig0022138:27770-27789 Msa1397190:intron 35.0%
!! TGCAAGTTAAATGGTTTGGT+AGG + tig0022138:27900-27919 None:intergenic 35.0%
GAAGTGCAAGTTAAATGGTT+TGG + tig0022138:27904-27923 None:intergenic 35.0%
CACATGAAGTGCAAGTTAAA+TGG + tig0022138:27909-27928 None:intergenic 35.0%
ATTGTCGCATCAACTTATTG+GGG + tig0022138:28214-28233 None:intergenic 35.0%
ATGTTCTTAGCAAGACTCAT+GGG + tig0022138:28503-28522 None:intergenic 35.0%
AATGTTCTTAGCAAGACTCA+TGG + tig0022138:28504-28523 None:intergenic 35.0%
TGAGTCTTGCTAAGAACATT+TGG - tig0022138:28504-28523 Msa1397190:intron 35.0%
CTCATATGTCCCAAAGTATA+AGG + tig0022138:28600-28619 None:intergenic 35.0%
!! GTTGAAATACAAAGGCATCT+TGG - tig0022138:28778-28797 Msa1397190:intron 35.0%
ATGAAGGTTCTATTGTCCTA+TGG - tig0022138:28825-28844 Msa1397190:CDS 35.0%
TTTATCTCCTCAACCATTGA+AGG + tig0022138:28977-28996 None:intergenic 35.0%
ATGACACGAATTGTATCCAA+TGG + tig0022138:26821-26840 None:intergenic 35.0%
!! CGTTAGAAATTTGTTGGCTA+AGG - tig0022138:26877-26896 Msa1397190:CDS 35.0%
!! AGAAATTTGTTGGCTAAGGA+AGG - tig0022138:26881-26900 Msa1397190:CDS 35.0%
! ACATGCAGTCGATTTAACTT+TGG + tig0022138:27180-27199 None:intergenic 35.0%
TGATCAAGATTGACTATGGT+CGG + tig0022138:27216-27235 None:intergenic 35.0%
TTATTGATGCAATGGTGAAG+TGG + tig0022138:27429-27448 None:intergenic 35.0%
GAGTACTCAAGTTTAATCCT+TGG - tig0022138:27736-27755 Msa1397190:intron 35.0%
AGAAACTTATAGAGGGATCA+GGG + tig0022138:27766-27785 None:intergenic 35.0%
AAGAAACTTATAGAGGGATC+AGG + tig0022138:27767-27786 None:intergenic 35.0%
CCCTCTATAAGTTTCTTACT+AGG - tig0022138:27770-27789 Msa1397190:intron 35.0%
!! TGCAAGTTAAATGGTTTGGT+AGG + tig0022138:27900-27919 None:intergenic 35.0%
GAAGTGCAAGTTAAATGGTT+TGG + tig0022138:27904-27923 None:intergenic 35.0%
CACATGAAGTGCAAGTTAAA+TGG + tig0022138:27909-27928 None:intergenic 35.0%
ATTGTCGCATCAACTTATTG+GGG + tig0022138:28214-28233 None:intergenic 35.0%
ATGTTCTTAGCAAGACTCAT+GGG + tig0022138:28503-28522 None:intergenic 35.0%
AATGTTCTTAGCAAGACTCA+TGG + tig0022138:28504-28523 None:intergenic 35.0%
TGAGTCTTGCTAAGAACATT+TGG - tig0022138:28504-28523 Msa1397190:intron 35.0%
CTCATATGTCCCAAAGTATA+AGG + tig0022138:28600-28619 None:intergenic 35.0%
!! GTTGAAATACAAAGGCATCT+TGG - tig0022138:28778-28797 Msa1397190:intron 35.0%
ATGAAGGTTCTATTGTCCTA+TGG - tig0022138:28825-28844 Msa1397190:CDS 35.0%
TTTATCTCCTCAACCATTGA+AGG + tig0022138:28977-28996 None:intergenic 35.0%
! GAGAAGAGAGAATGGAGTTT+TGG - tig0022138:26711-26730 Msa1397190:three_prime_UTR 40.0%
!! ATTTTTCAGATACCCTGACC+CGG - tig0022138:27824-27843 Msa1397190:intron 40.0%
AGCAAAACATACGAGTCAGT+TGG + tig0022138:27852-27871 None:intergenic 40.0%
TGGACCATGTATGACATCAA+TGG + tig0022138:28172-28191 None:intergenic 40.0%
TTGTCGCATCAACTTATTGG+GGG + tig0022138:28213-28232 None:intergenic 40.0%
AAAGCAACATTCACCATGGA+AGG + tig0022138:28362-28381 None:intergenic 40.0%
!! TCCATGGTGAATGTTGCTTT+AGG - tig0022138:28362-28381 Msa1397190:intron 40.0%
TCCTAAAGCAACATTCACCA+TGG + tig0022138:28366-28385 None:intergenic 40.0%
!! ATGGTGAATGTTGCTTTAGG+AGG - tig0022138:28365-28384 Msa1397190:intron 40.0%
!! AATGTTGCTTTAGGAGGACT+TGG - tig0022138:28371-28390 Msa1397190:intron 40.0%
CAGGGGAGATCAAAATACTT+TGG + tig0022138:28409-28428 None:intergenic 40.0%
!! CTGCTCTAGCCTTATACTTT+GGG - tig0022138:28588-28607 Msa1397190:intron 40.0%
GTGAGTACTATGTTTGTAGC+AGG - tig0022138:28671-28690 Msa1397190:intron 40.0%
AGTACTATGTTTGTAGCAGG+AGG - tig0022138:28674-28693 Msa1397190:intron 40.0%
ATTGTCCTATGGAGAGGTTT+AGG - tig0022138:28836-28855 Msa1397190:CDS 40.0%
CTTAGAGAGACTTGATAAGC+AGG + tig0022138:28905-28924 None:intergenic 40.0%
CTGCTTATCAAGTCTCTCTA+AGG - tig0022138:28903-28922 Msa1397190:CDS 40.0%
CATTACTCCTTCAATGGTTG+AGG - tig0022138:28967-28986 Msa1397190:CDS 40.0%
! GAGAAGAGAGAATGGAGTTT+TGG - tig0022138:26711-26730 Msa1397190:three_prime_UTR 40.0%
!! ATTTTTCAGATACCCTGACC+CGG - tig0022138:27824-27843 Msa1397190:intron 40.0%
AGCAAAACATACGAGTCAGT+TGG + tig0022138:27852-27871 None:intergenic 40.0%
TGGACCATGTATGACATCAA+TGG + tig0022138:28172-28191 None:intergenic 40.0%
TTGTCGCATCAACTTATTGG+GGG + tig0022138:28213-28232 None:intergenic 40.0%
AAAGCAACATTCACCATGGA+AGG + tig0022138:28362-28381 None:intergenic 40.0%
!! TCCATGGTGAATGTTGCTTT+AGG - tig0022138:28362-28381 Msa1397190:intron 40.0%
TCCTAAAGCAACATTCACCA+TGG + tig0022138:28366-28385 None:intergenic 40.0%
!! ATGGTGAATGTTGCTTTAGG+AGG - tig0022138:28365-28384 Msa1397190:intron 40.0%
!! AATGTTGCTTTAGGAGGACT+TGG - tig0022138:28371-28390 Msa1397190:intron 40.0%
CAGGGGAGATCAAAATACTT+TGG + tig0022138:28409-28428 None:intergenic 40.0%
!! CTGCTCTAGCCTTATACTTT+GGG - tig0022138:28588-28607 Msa1397190:intron 40.0%
GTGAGTACTATGTTTGTAGC+AGG - tig0022138:28671-28690 Msa1397190:intron 40.0%
AGTACTATGTTTGTAGCAGG+AGG - tig0022138:28674-28693 Msa1397190:intron 40.0%
ATTGTCCTATGGAGAGGTTT+AGG - tig0022138:28836-28855 Msa1397190:CDS 40.0%
CTTAGAGAGACTTGATAAGC+AGG + tig0022138:28905-28924 None:intergenic 40.0%
CTGCTTATCAAGTCTCTCTA+AGG - tig0022138:28903-28922 Msa1397190:CDS 40.0%
CATTACTCCTTCAATGGTTG+AGG - tig0022138:28967-28986 Msa1397190:CDS 40.0%
!! GAGTTTGTAGCTGGTGGATT+TGG - tig0022138:26767-26786 Msa1397190:three_prime_UTR 45.0%
!! TTTGTAGCTGGTGGATTTGG+AGG - tig0022138:26770-26789 Msa1397190:three_prime_UTR 45.0%
CGTGTCATGCAACAACAATC+TGG - tig0022138:26833-26852 Msa1397190:CDS 45.0%
GACCTACTGCTTTGTATCGT+GGG - tig0022138:26903-26922 Msa1397190:CDS 45.0%
ATCCCACGATACAAAGCAGT+AGG + tig0022138:26908-26927 None:intergenic 45.0%
TACTGCTTTGTATCGTGGGA+TGG - tig0022138:26907-26926 Msa1397190:CDS 45.0%
TGAAAACCAACAGAGGCCAA+AGG + tig0022138:26938-26957 None:intergenic 45.0%
!!! TTTGGCCTCTGTTGGTTTTC+AGG - tig0022138:26937-26956 Msa1397190:CDS 45.0%
CCTAACCTGAAAACCAACAG+AGG + tig0022138:26945-26964 None:intergenic 45.0%
!!! CCTCTGTTGGTTTTCAGGTT+AGG - tig0022138:26942-26961 Msa1397190:CDS 45.0%
AATAACGAAGTGGGCAACTG+TGG - tig0022138:26996-27015 Msa1397190:CDS 45.0%
GTGAAGTGGACACTTGTGTA+CGG + tig0022138:27415-27434 None:intergenic 45.0%
GGCACACGGTGTGATTTAAT+TGG + tig0022138:28192-28211 None:intergenic 45.0%
! ATCAACTTATTGGGGGCACA+CGG + tig0022138:28206-28225 None:intergenic 45.0%
GTCCATGTGAAGAAGTAGAG+GGG + tig0022138:28337-28356 None:intergenic 45.0%
GGTCCATGTGAAGAAGTAGA+GGG + tig0022138:28338-28357 None:intergenic 45.0%
AGGTCCATGTGAAGAAGTAG+AGG + tig0022138:28339-28358 None:intergenic 45.0%
CCAAAGTATAAGGCTAGAGC+AGG + tig0022138:28590-28609 None:intergenic 45.0%
!! CCTGCTCTAGCCTTATACTT+TGG - tig0022138:28587-28606 Msa1397190:intron 45.0%
ACAAGAGAGAAACTTCACCC+TGG - tig0022138:28623-28642 Msa1397190:intron 45.0%
GACAACTTTCTCTGCAACCA+GGG + tig0022138:28643-28662 None:intergenic 45.0%
TGACAACTTTCTCTGCAACC+AGG + tig0022138:28644-28663 None:intergenic 45.0%
! TTTGTAGCAGGAGGATTAGC+AGG - tig0022138:28683-28702 Msa1397190:intron 45.0%
! TTGTAGCAGGAGGATTAGCA+GGG - tig0022138:28684-28703 Msa1397190:intron 45.0%
GATTAGCAGGGATAGCAAGT+TGG - tig0022138:28696-28715 Msa1397190:intron 45.0%
GGTTCTATTGTCCTATGGAG+AGG - tig0022138:28830-28849 Msa1397190:CDS 45.0%
TTGCTCCTAAACCTCTCCAT+AGG + tig0022138:28844-28863 None:intergenic 45.0%
!! GAGTTTGTAGCTGGTGGATT+TGG - tig0022138:26767-26786 Msa1397190:three_prime_UTR 45.0%
!! TTTGTAGCTGGTGGATTTGG+AGG - tig0022138:26770-26789 Msa1397190:three_prime_UTR 45.0%
CGTGTCATGCAACAACAATC+TGG - tig0022138:26833-26852 Msa1397190:CDS 45.0%
GACCTACTGCTTTGTATCGT+GGG - tig0022138:26903-26922 Msa1397190:CDS 45.0%
ATCCCACGATACAAAGCAGT+AGG + tig0022138:26908-26927 None:intergenic 45.0%
TACTGCTTTGTATCGTGGGA+TGG - tig0022138:26907-26926 Msa1397190:CDS 45.0%
TGAAAACCAACAGAGGCCAA+AGG + tig0022138:26938-26957 None:intergenic 45.0%
!!! TTTGGCCTCTGTTGGTTTTC+AGG - tig0022138:26937-26956 Msa1397190:CDS 45.0%
CCTAACCTGAAAACCAACAG+AGG + tig0022138:26945-26964 None:intergenic 45.0%
!!! CCTCTGTTGGTTTTCAGGTT+AGG - tig0022138:26942-26961 Msa1397190:CDS 45.0%
AATAACGAAGTGGGCAACTG+TGG - tig0022138:26996-27015 Msa1397190:CDS 45.0%
GTGAAGTGGACACTTGTGTA+CGG + tig0022138:27415-27434 None:intergenic 45.0%
GGCACACGGTGTGATTTAAT+TGG + tig0022138:28192-28211 None:intergenic 45.0%
! ATCAACTTATTGGGGGCACA+CGG + tig0022138:28206-28225 None:intergenic 45.0%
GTCCATGTGAAGAAGTAGAG+GGG + tig0022138:28337-28356 None:intergenic 45.0%
GGTCCATGTGAAGAAGTAGA+GGG + tig0022138:28338-28357 None:intergenic 45.0%
AGGTCCATGTGAAGAAGTAG+AGG + tig0022138:28339-28358 None:intergenic 45.0%
CCAAAGTATAAGGCTAGAGC+AGG + tig0022138:28590-28609 None:intergenic 45.0%
!! CCTGCTCTAGCCTTATACTT+TGG - tig0022138:28587-28606 Msa1397190:intron 45.0%
ACAAGAGAGAAACTTCACCC+TGG - tig0022138:28623-28642 Msa1397190:intron 45.0%
GACAACTTTCTCTGCAACCA+GGG + tig0022138:28643-28662 None:intergenic 45.0%
TGACAACTTTCTCTGCAACC+AGG + tig0022138:28644-28663 None:intergenic 45.0%
! TTTGTAGCAGGAGGATTAGC+AGG - tig0022138:28683-28702 Msa1397190:intron 45.0%
! TTGTAGCAGGAGGATTAGCA+GGG - tig0022138:28684-28703 Msa1397190:intron 45.0%
GATTAGCAGGGATAGCAAGT+TGG - tig0022138:28696-28715 Msa1397190:intron 45.0%
GGTTCTATTGTCCTATGGAG+AGG - tig0022138:28830-28849 Msa1397190:CDS 45.0%
TTGCTCCTAAACCTCTCCAT+AGG + tig0022138:28844-28863 None:intergenic 45.0%
!!! AAAAAATATGTTTATTTTTA+TGG - tig0022138:28258-28277 Msa1397190:intron 5.0%
!!! AAAAAATATGTTTATTTTTA+TGG - tig0022138:28258-28277 Msa1397190:intron 5.0%
TTGGGGAGAGAGTTTGTAGC+TGG - tig0022138:26758-26777 Msa1397190:three_prime_UTR 50.0%
GGACCTACTGCTTTGTATCG+TGG - tig0022138:26902-26921 Msa1397190:CDS 50.0%
! ACATACGAGTCAGTTGGCTC+CGG + tig0022138:27846-27865 None:intergenic 50.0%
TTCACATGGACCTCCTTCCA+TGG - tig0022138:28346-28365 Msa1397190:intron 50.0%
GCAACATTCACCATGGAAGG+AGG + tig0022138:28359-28378 None:intergenic 50.0%
TGGAAAAATGAGGGCCTTCG+CGG - tig0022138:28524-28543 Msa1397190:intron 50.0%
ATCCTCGATAAATGCCGCGA+AGG + tig0022138:28541-28560 None:intergenic 50.0%
CGCGGCATTTATCGAGGATT+TGG - tig0022138:28542-28561 Msa1397190:intron 50.0%
TTGGGGAGAGAGTTTGTAGC+TGG - tig0022138:26758-26777 Msa1397190:three_prime_UTR 50.0%
GGACCTACTGCTTTGTATCG+TGG - tig0022138:26902-26921 Msa1397190:CDS 50.0%
! ACATACGAGTCAGTTGGCTC+CGG + tig0022138:27846-27865 None:intergenic 50.0%
TTCACATGGACCTCCTTCCA+TGG - tig0022138:28346-28365 Msa1397190:intron 50.0%
GCAACATTCACCATGGAAGG+AGG + tig0022138:28359-28378 None:intergenic 50.0%
TGGAAAAATGAGGGCCTTCG+CGG - tig0022138:28524-28543 Msa1397190:intron 50.0%
ATCCTCGATAAATGCCGCGA+AGG + tig0022138:28541-28560 None:intergenic 50.0%
CGCGGCATTTATCGAGGATT+TGG - tig0022138:28542-28561 Msa1397190:intron 50.0%
GGGAGAGAGTTTGTAGCTGG+TGG - tig0022138:26761-26780 Msa1397190:three_prime_UTR 55.0%
TCGTGGGATGGCTGTTCCTT+TGG - tig0022138:26919-26938 Msa1397190:CDS 55.0%
GCTGTTCCTTTGGCCTCTGT+TGG - tig0022138:26929-26948 Msa1397190:CDS 55.0%
AGAGGGATCAGGGAGATCCA+AGG + tig0022138:27756-27775 None:intergenic 55.0%
! CATACGAGTCAGTTGGCTCC+GGG + tig0022138:27845-27864 None:intergenic 55.0%
GGCCCCTCTACTTCTTCACA+TGG - tig0022138:28332-28351 Msa1397190:intron 55.0%
!! GCTTTAGGAGGACTTGGTGC+AGG - tig0022138:28377-28396 Msa1397190:intron 55.0%
GGGAGAGAGTTTGTAGCTGG+TGG - tig0022138:26761-26780 Msa1397190:three_prime_UTR 55.0%
TCGTGGGATGGCTGTTCCTT+TGG - tig0022138:26919-26938 Msa1397190:CDS 55.0%
GCTGTTCCTTTGGCCTCTGT+TGG - tig0022138:26929-26948 Msa1397190:CDS 55.0%
AGAGGGATCAGGGAGATCCA+AGG + tig0022138:27756-27775 None:intergenic 55.0%
! CATACGAGTCAGTTGGCTCC+GGG + tig0022138:27845-27864 None:intergenic 55.0%
GGCCCCTCTACTTCTTCACA+TGG - tig0022138:28332-28351 Msa1397190:intron 55.0%
!! GCTTTAGGAGGACTTGGTGC+AGG - tig0022138:28377-28396 Msa1397190:intron 55.0%
! GGTGGATTTGGAGGCACAGC+AGG - tig0022138:26779-26798 Msa1397190:three_prime_UTR 60.0%
! AGTCAGTTGGCTCCGGGTCA+GGG + tig0022138:27839-27858 None:intergenic 60.0%
GGCCTTCGCGGCATTTATCG+AGG - tig0022138:28536-28555 Msa1397190:intron 60.0%
! GGTGGATTTGGAGGCACAGC+AGG - tig0022138:26779-26798 Msa1397190:three_prime_UTR 60.0%
! AGTCAGTTGGCTCCGGGTCA+GGG + tig0022138:27839-27858 None:intergenic 60.0%
GGCCTTCGCGGCATTTATCG+AGG - tig0022138:28536-28555 Msa1397190:intron 60.0%
! GAGTCAGTTGGCTCCGGGTC+AGG + tig0022138:27840-27859 None:intergenic 65.0%
! GAGTCAGTTGGCTCCGGGTC+AGG + tig0022138:27840-27859 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0022138 gene 26669 29092 26669 ID=Msa1397190;Name=Msa1397190
tig0022138 mRNA 26669 29092 26669 ID=Msa1397190-mRNA-1;Parent=Msa1397190;Name=Msa1397190-mRNA-1;_AED=0.24;_eAED=0.24;_QI=53|1|1|1|1|1|2|149|297
tig0022138 exon 26669 27474 26669 ID=Msa1397190-mRNA-1:exon:15963;Parent=Msa1397190-mRNA-1
tig0022138 exon 28803 29092 28803 ID=Msa1397190-mRNA-1:exon:15962;Parent=Msa1397190-mRNA-1
tig0022138 five_prime_UTR 29040 29092 29040 ID=Msa1397190-mRNA-1:five_prime_utr;Parent=Msa1397190-mRNA-1
tig0022138 CDS 28803 29039 28803 ID=Msa1397190-mRNA-1:cds;Parent=Msa1397190-mRNA-1
tig0022138 CDS 26818 27474 26818 ID=Msa1397190-mRNA-1:cds;Parent=Msa1397190-mRNA-1
tig0022138 three_prime_UTR 26669 26817 26669 ID=Msa1397190-mRNA-1:three_prime_utr;Parent=Msa1397190-mRNA-1
Gene Sequence

>Msa1397190

ATGGAGTTTTGGCAAGAAAATGTTGTGATGAACAATTTGGGGAGAGAGTTTGTAGCTGGTGGATTTGGAGGCACAGCAGGTATAATCTCAAGTTATCCATTGGATACAATTCGTGTCATGCAACAACAATCTGGCAATGCATCTGCTAGCAACATCGTTAGAAATTTGTTGGCTAAGGAAGGACCTACTGCTTTGTATCGTGGGATGGCTGTTCCTTTGGCCTCTGTTGGTTTTCAGAATGCTATGATTTTTCAAAGTTATACCGTTTTTACAAGAATTGTTGGCCCCTCTACTTCTTCACATGGACCTCCTTCCATGGTGAATGTTGCTTTAGGAGGACTTGGTGCAGGTGCACTCCAAAGTATTTTGATCTCCCCTGTTGAGTTGATTAAAATTCGCCTTCAACTACAAAAGAACTTAAATCATTTTTCTGAAAACAAAAAGAGTGCTCCCATGAGTCTTGCTAAGAACATTTGGAAAAATGAGGGCCTTCGCGGCATTTATCGAGGATTTGGCATCACTGTTCTTAGAGATGCACCTGCTCTAGCCTTATACTTTGGGACATATGAGTACACAAGAGAGAAACTTCACCCTGGTTGCAGAGAAAGTTGTCAAGAAAGTGTGAGTACTATGTTTGTAGCAGGAGGATTAGCAGGGATAGCAAGTTGGCTTTTCAACTACCCTACTGATGTTATAAAGACAAGATTACAAGCTCAAACATCTTCTTCGTTGAAATACAAAGGCATCTTGGATTGCACCTTAAAGATAATCAAAGATGAAGGTTCTATTGTCCTATGGAGAGGTTTAGGAGCAACACTTGTTAGAGCATTTGTTATGAATAGTGCTATATTTCCTGCTTATCAAGTCTCTCTAAGGTGTCTTGTCAACAATTAA
Protein sequence

>Msa1397190

MEFWQENVVMNNLGREFVAGGFGGTAGIISSYPLDTIRVMQQQSGNASASNIVRNLLAKEGPTALYRGMAVPLASVGFQNAMIFQSYTVFTRIVGPSTSSHGPPSMVNVALGGLGAGALQSILISPVELIKIRLQLQKNLNHFSENKKSAPMSLAKNIWKNEGLRGIYRGFGITVLRDAPALALYFGTYEYTREKLHPGCRESCQESVSTMFVAGGLAGIASWLFNYPTDVIKTRLQAQTSSSLKYKGILDCTLKIIKDEGSIVLWRGLGATLVRAFVMNSAIFPAYQVSLRCLVNN*