AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677140 MtrunA17_Chr4g0021041 97.417 271 7 0 3 273 134 404 0.0 531
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677140 AT5G17520.1 70.079 254 76 0 17 270 161 414 5.42e-135 387
Msa0677140 AT5G17520.2 70.079 254 76 0 17 270 99 352 7.50e-135 385
Msa0677140 AT5G17523.1 58.333 72 30 0 17 88 161 232 9.86e-21 89.4

Find 88 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGACAGGAATGGCTTTC+TGG 0.164679 4_4:+29521808 Msa0677140:intron
ATGCTGGAATCTGGCGCTTT+TGG 0.199585 4_4:+29519403 Msa0677140:CDS
AAATTTGTTGGTGGAATATC+TGG 0.287335 4_4:+29520157 Msa0677140:CDS
TGGGAAGATTTCATTACAAT+TGG 0.310319 4_4:+29519423 Msa0677140:CDS
CAAGATGCTGTTAGGTAGAT+AGG 0.317684 4_4:-29519587 None:intergenic
TTTCAATTATGTGTATAGTA+TGG 0.327121 4_4:+29522003 Msa0677140:three_prime_UTR
GCTACCATATTCTATGGATA+TGG 0.332128 4_4:+29521030 Msa0677140:CDS
GCTTACTAAATGCTGGAATC+TGG 0.333611 4_4:+29519394 Msa0677140:CDS
TATCAACAAGGAATTCTTCT+TGG 0.335994 4_4:+29521182 Msa0677140:CDS
TCGTGGGCTACCATATTCTA+TGG 0.338875 4_4:+29521024 Msa0677140:CDS
GGGAAGATTTCATTACAATT+GGG 0.361219 4_4:+29519424 Msa0677140:CDS
CTTGGCAGCAACTGTCGGTT+TGG 0.363762 4_4:+29521200 Msa0677140:CDS
CTGAATTTCATGAATTACTT+TGG 0.367581 4_4:+29519372 Msa0677140:CDS
ATTCCCATATCCATAGAATA+TGG 0.373480 4_4:-29521034 None:intergenic
AAATTTAAAGTTTGTGATGC+TGG 0.377872 4_4:+29521898 Msa0677140:exon
ACACCAGTCTTCTCCCATCT+TGG 0.378370 4_4:+29522040 Msa0677140:three_prime_UTR
AAGCAACACTAACAATATAA+TGG 0.385819 4_4:-29522222 None:intergenic
GACAAGCCTTTCATGTTCTC+AGG 0.395948 4_4:-29520348 None:intergenic
GCATGGTTACAGTTCACCTT+TGG 0.396273 4_4:+29521845 Msa0677140:CDS
ATTTACTTACAGGCAAGAAC+TGG 0.402272 4_4:+29520112 Msa0677140:intron
TTGCTTGCGATGCTTGGAAA+TGG 0.404062 4_4:+29520384 Msa0677140:CDS
TACTTTGGCTTACTAAATGC+TGG 0.410058 4_4:+29519387 Msa0677140:CDS
CACTAAAGGTCAACCACATT+AGG 0.411694 4_4:-29519136 None:intergenic
CAACTGTCGGTTTGGTCTCA+TGG 0.412077 4_4:+29521208 Msa0677140:CDS
CACCAGTCTTCTCCCATCTT+GGG 0.416031 4_4:+29522041 Msa0677140:three_prime_UTR
TTGCGTTCACTTACAGGAAC+AGG 0.427574 4_4:-29521065 None:intergenic
GAGAAAGGTGTTAAATTTGT+TGG 0.432102 4_4:+29520145 Msa0677140:CDS
TCTATGTTGCTTGCGATGCT+TGG 0.432187 4_4:+29520378 Msa0677140:CDS
ACCGATGAAGTTTAGACATC+TGG 0.437558 4_4:+29521921 Msa0677140:three_prime_UTR
GCACCAGGCAAGATGCTGTT+AGG 0.438842 4_4:-29519595 None:intergenic
AACTATGATTGTAGGTTCAC+TGG 0.442842 4_4:+29520997 Msa0677140:intron
CTCAATCCTGAGAACATGAA+AGG 0.450928 4_4:+29520342 Msa0677140:CDS
AACGTTTACCATCTGAGAAA+CGG 0.456160 4_4:-29520212 None:intergenic
ATATGTTGTCATTGTTCAGT+TGG 0.460317 4_4:+29519281 Msa0677140:CDS
TTTGGCTTCTCTACGTGACT+TGG 0.461651 4_4:+29521863 Msa0677140:CDS
ACGTTTACCATCTGAGAAAC+GGG 0.463253 4_4:-29520211 None:intergenic
CTACCATATTCTATGGATAT+GGG 0.466317 4_4:+29521031 Msa0677140:CDS
CATTGTTCAGTTGGCATTAG+CGG 0.471343 4_4:+29519290 Msa0677140:CDS
GGAATGCTTACTAGTTTGCT+TGG 0.475196 4_4:+29519177 Msa0677140:CDS
TTCACTTGGCTGAATTAATG+AGG 0.484470 4_4:+29519002 Msa0677140:five_prime_UTR
TTCTTCTTGGCAGCAACTGT+CGG 0.491989 4_4:+29521195 Msa0677140:CDS
ACTTCAGTGGTTGTAGTGTC+AGG 0.495916 4_4:+29519342 Msa0677140:CDS
AAGATGCTGTTAGGTAGATA+GGG 0.497941 4_4:-29519586 None:intergenic
ATTAATTCAGCCAAGTGAAG+TGG 0.499480 4_4:-29518998 None:intergenic
GACAGCTATGACAAAGGAAA+TGG 0.500671 4_4:-29519617 None:intergenic
ACTGGAAAACTTTCTGAGAA+AGG 0.503327 4_4:+29520130 Msa0677140:CDS
CTACCTAACAGCATCTTGCC+TGG 0.509297 4_4:+29519592 Msa0677140:CDS
CTTTGCCAAGAAGAGAGAAA+AGG 0.511181 4_4:+29519221 Msa0677140:CDS
GAAGAGAGAAAAGGAAGCAA+TGG 0.519086 4_4:+29519230 Msa0677140:CDS
ATTGACAATCATGTCACTAA+AGG 0.520171 4_4:-29519150 None:intergenic
GGAAGATTTCATTACAATTG+GGG 0.526329 4_4:+29519425 Msa0677140:CDS
CAAAGTATGAAAGTAGTGAC+AGG 0.529455 4_4:-29519203 None:intergenic
AGCTGTCGTGGCTGTTACCA+TGG 0.536823 4_4:+29519633 Msa0677140:CDS
TCTTGCATACCCACTTCACT+TGG 0.538003 4_4:+29518988 Msa0677140:five_prime_UTR
AAAGGTGTTAAATTTGTTGG+TGG 0.539268 4_4:+29520148 Msa0677140:CDS
GTGGATGCCCGTTTCTCAGA+TGG 0.539333 4_4:+29520204 Msa0677140:CDS
AGTGACATGATTGTCAATGC+AGG 0.547592 4_4:+29519155 Msa0677140:exon
TCAATGACTCAATCCCAAGA+TGG 0.551212 4_4:-29522054 None:intergenic
CAATGACTCAATCCCAAGAT+GGG 0.552009 4_4:-29522053 None:intergenic
ATGACAAAGGAAATGGCACC+AGG 0.553392 4_4:-29519610 None:intergenic
AGCCACGACAGCTATGACAA+AGG 0.558295 4_4:-29519623 None:intergenic
GTCGGTTTGGTCTCATGGAT+AGG 0.558576 4_4:+29521213 Msa0677140:CDS
GTGACATGATTGTCAATGCA+GGG 0.560696 4_4:+29519156 Msa0677140:exon
TAGGTTCACTGGTTCATCGT+GGG 0.561359 4_4:+29521008 Msa0677140:intron
TTCCTTTGTCATAGCTGTCG+TGG 0.561699 4_4:+29519621 Msa0677140:CDS
CAGTTTAAACATTATCAACA+AGG 0.561755 4_4:+29521170 Msa0677140:intron
ATCCCAAGATGGGAGAAGAC+TGG 0.562821 4_4:-29522043 None:intergenic
CAGTGTGGATCAAGCATGAG+AGG 0.568358 4_4:-29521949 None:intergenic
GCAATGGTAGTGCAGACACT+TGG 0.582422 4_4:+29519246 Msa0677140:CDS
CAATCTGGATACAGATAATG+TGG 0.583147 4_4:+29519551 Msa0677140:intron
TATTCATTCGTGATTTCATG+TGG 0.586978 4_4:+29520427 Msa0677140:CDS
CTGCTACATTACTCTTCATG+TGG 0.600770 4_4:+29520185 Msa0677140:CDS
ACCAGATGTCTAAACTTCAT+CGG 0.603846 4_4:-29521922 None:intergenic
GTTGCTCTTATATCCTAATG+TGG 0.619857 4_4:+29519123 Msa0677140:five_prime_UTR
TTAATTCAGCCAAGTGAAGT+GGG 0.620752 4_4:-29518997 None:intergenic
TGGAGAGACAGTGTAGTGCA+TGG 0.624152 4_4:+29521828 Msa0677140:CDS
GAAGATTTCATTACAATTGG+GGG 0.629398 4_4:+29519426 Msa0677140:CDS
GTGGATCAAGCATGAGAGGG+AGG 0.633790 4_4:-29521945 None:intergenic
TTAATCAAACATGCACGGCG+TGG 0.643600 4_4:+29519099 Msa0677140:five_prime_UTR
AGATGCTGTTAGGTAGATAG+GGG 0.646554 4_4:-29519585 None:intergenic
TTGTTGGTGGAATATCTGGA+TGG 0.651433 4_4:+29520161 Msa0677140:CDS
GTACTTTAATCAAACATGCA+CGG 0.652645 4_4:+29519094 Msa0677140:five_prime_UTR
GTAGGTTCACTGGTTCATCG+TGG 0.663007 4_4:+29521007 Msa0677140:intron
AGTGTGGATCAAGCATGAGA+GGG 0.665716 4_4:-29521948 None:intergenic
TCACGAATGAATAAAGCACG+TGG 0.695307 4_4:-29520417 None:intergenic
GTATTGCATCTGCAGCACAC+AGG 0.699357 4_4:+29521971 Msa0677140:three_prime_UTR
AAGTCACGTAGAGAAGCCAA+AGG 0.721318 4_4:-29521861 None:intergenic
GCTGCAGATGCAATACAGTG+TGG 0.775167 4_4:-29521964 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCAATTTAAAAAATTTAT+GGG + chr4_4:29520779-29520798 Msa0677140:intron 10.0%
!! AATAATCAAATATAACCTAA+AGG - chr4_4:29519673-29519692 None:intergenic 15.0%
!!! ATATATGATGAATATTTTTG+TGG + chr4_4:29520235-29520254 Msa0677140:intron 15.0%
!! GGTTCAATTTAAAAAATTTA+TGG + chr4_4:29520778-29520797 Msa0677140:intron 15.0%
!! AAAGATGTTATATATGAAAT+TGG + chr4_4:29521532-29521551 Msa0677140:intron 15.0%
!!! GTATTTTATTACTAGTATAA+AGG - chr4_4:29521566-29521585 None:intergenic 15.0%
!! TAAAAGTAGTATATAACATT+TGG + chr4_4:29521605-29521624 Msa0677140:intron 15.0%
!!! GAATTCATTTTAACATTTTG+AGG - chr4_4:29519826-29519845 None:intergenic 20.0%
!! CTAATAACATATAACAATCT+GGG - chr4_4:29519859-29519878 None:intergenic 20.0%
!! TTAAGTTATGTGTTTAACAT+TGG - chr4_4:29519892-29519911 None:intergenic 20.0%
!! AAGTACTTAAATGAAAATTC+AGG - chr4_4:29519922-29519941 None:intergenic 20.0%
!!! TTTCATTTTCATTTACTTAC+AGG + chr4_4:29520102-29520121 Msa0677140:intron 20.0%
!! CACTAGAAAAAACAAAAAAT+GGG - chr4_4:29520312-29520331 None:intergenic 20.0%
!! AAAAAAACTAATCTACAACA+AGG - chr4_4:29520635-29520654 None:intergenic 20.0%
!! TTTCTGTTGAATATTTGATT+TGG + chr4_4:29521349-29521368 Msa0677140:intron 20.0%
!!! CATTTTTATGAAATTATGAC+AGG + chr4_4:29521795-29521814 Msa0677140:intron 20.0%
!! TTTCAATTATGTGTATAGTA+TGG + chr4_4:29522003-29522022 Msa0677140:three_prime_UTR 20.0%
! CTGAATTTCATGAATTACTT+TGG + chr4_4:29519372-29519391 Msa0677140:CDS 25.0%
!! AATTTTACTAATACTAGGCT+GGG - chr4_4:29519490-29519509 None:intergenic 25.0%
!! TAATTTTACTAATACTAGGC+TGG - chr4_4:29519491-29519510 None:intergenic 25.0%
!! CGTCTAATTTTACTAATACT+AGG - chr4_4:29519495-29519514 None:intergenic 25.0%
!! GTAATCTTCTTATTTCCTTT+AGG + chr4_4:29519655-29519674 Msa0677140:intron 25.0%
! GCTAATAACATATAACAATC+TGG - chr4_4:29519860-29519879 None:intergenic 25.0%
! TGTTTAACATTGGTATGATA+GGG - chr4_4:29519882-29519901 None:intergenic 25.0%
! GTTAACTAAACCAAGAAATT+TGG + chr4_4:29520017-29520036 Msa0677140:intron 25.0%
! CCACTAGAAAAAACAAAAAA+TGG - chr4_4:29520313-29520332 None:intergenic 25.0%
!!! CCATTTTTTGTTTTTTCTAG+TGG + chr4_4:29520310-29520329 Msa0677140:intron 25.0%
!!! TAAGTTTGTTGTAGAATAGT+TGG + chr4_4:29520702-29520721 Msa0677140:intron 25.0%
! ACAGTAATATGTAGAAAATG+AGG + chr4_4:29520727-29520746 Msa0677140:intron 25.0%
! CACAATAAATCAATTATCAC+TGG - chr4_4:29520844-29520863 None:intergenic 25.0%
! ACCTACAATCATAGTTAAAT+CGG - chr4_4:29520993-29521012 None:intergenic 25.0%
!!! CTTGTTGATAATGTTTAAAC+TGG - chr4_4:29521172-29521191 None:intergenic 25.0%
! CAGTTTAAACATTATCAACA+AGG + chr4_4:29521170-29521189 Msa0677140:intron 25.0%
! AAAAAAAATGATTGCGTAAG+AGG - chr4_4:29521243-29521262 None:intergenic 25.0%
! GTAATAAAATACTGCTGAAA+TGG + chr4_4:29521574-29521593 Msa0677140:intron 25.0%
!! CTTTAAAGACTTTAGATAGT+AGG + chr4_4:29521657-29521676 Msa0677140:intron 25.0%
!! CTTTAGATAGTAGGTTTTTA+TGG + chr4_4:29521666-29521685 Msa0677140:intron 25.0%
! CCTAATTAAGAAACTATTCA+TGG - chr4_4:29521738-29521757 None:intergenic 25.0%
! CCATGAATAGTTTCTTAATT+AGG + chr4_4:29521735-29521754 Msa0677140:intron 25.0%
! TTATGAAATTATGACAGGAA+TGG + chr4_4:29521800-29521819 Msa0677140:intron 25.0%
!! AAATTTAAAGTTTGTGATGC+TGG + chr4_4:29521898-29521917 Msa0677140:exon 25.0%
!! GTAATTAATTAGCGTTTTAC+AGG + chr4_4:29522089-29522108 Msa0677140:three_prime_UTR 25.0%
GTACTTTAATCAAACATGCA+CGG + chr4_4:29519094-29519113 Msa0677140:five_prime_UTR 30.0%
ATTGACAATCATGTCACTAA+AGG - chr4_4:29519153-29519172 None:intergenic 30.0%
ATATGTTGTCATTGTTCAGT+TGG + chr4_4:29519281-29519300 Msa0677140:CDS 30.0%
ACTGAAGTTGCTAAAAAGTA+CGG - chr4_4:29519330-29519349 None:intergenic 30.0%
TGGGAAGATTTCATTACAAT+TGG + chr4_4:29519423-29519442 Msa0677140:CDS 30.0%
GGGAAGATTTCATTACAATT+GGG + chr4_4:29519424-29519443 Msa0677140:CDS 30.0%
GGAAGATTTCATTACAATTG+GGG + chr4_4:29519425-29519444 Msa0677140:CDS 30.0%
GAAGATTTCATTACAATTGG+GGG + chr4_4:29519426-29519445 Msa0677140:CDS 30.0%
AAGGAAAACACTATTACTTG+AGG - chr4_4:29519465-29519484 None:intergenic 30.0%
CTGTATCCAGATTGTAAATT+GGG - chr4_4:29519545-29519564 None:intergenic 30.0%
TCTGTATCCAGATTGTAAAT+TGG - chr4_4:29519546-29519565 None:intergenic 30.0%
AGGAAATAAGAAGATTACCA+TGG - chr4_4:29519653-29519672 None:intergenic 30.0%
! TTATTTCTCAGAACTTAGTC+CGG + chr4_4:29519688-29519707 Msa0677140:intron 30.0%
TAACATATAACAATCTGGGT+GGG - chr4_4:29519855-29519874 None:intergenic 30.0%
ATAACATATAACAATCTGGG+TGG - chr4_4:29519856-29519875 None:intergenic 30.0%
GTGTTTAACATTGGTATGAT+AGG - chr4_4:29519883-29519902 None:intergenic 30.0%
ACATGGAATTCCAAATTTCT+TGG - chr4_4:29520030-29520049 None:intergenic 30.0%
!! GAGAAAGGTGTTAAATTTGT+TGG + chr4_4:29520145-29520164 Msa0677140:CDS 30.0%
!! AAAGGTGTTAAATTTGTTGG+TGG + chr4_4:29520148-29520167 Msa0677140:CDS 30.0%
!! AAATTTGTTGGTGGAATATC+TGG + chr4_4:29520157-29520176 Msa0677140:CDS 30.0%
GTCATAAGAAAAATGCATAG+GGG - chr4_4:29520290-29520309 None:intergenic 30.0%
GGTCATAAGAAAAATGCATA+GGG - chr4_4:29520291-29520310 None:intergenic 30.0%
TATTCATTCGTGATTTCATG+TGG + chr4_4:29520427-29520446 Msa0677140:CDS 30.0%
AACAAGGATTTAACCATAAC+GGG - chr4_4:29520619-29520638 None:intergenic 30.0%
CAACAAGGATTTAACCATAA+CGG - chr4_4:29520620-29520639 None:intergenic 30.0%
! ACCGATTTAACTATGATTGT+AGG + chr4_4:29520989-29521008 Msa0677140:intron 30.0%
CTACCATATTCTATGGATAT+GGG + chr4_4:29521031-29521050 Msa0677140:CDS 30.0%
ATTCCCATATCCATAGAATA+TGG - chr4_4:29521037-29521056 None:intergenic 30.0%
TATCAACAAGGAATTCTTCT+TGG + chr4_4:29521182-29521201 Msa0677140:CDS 30.0%
ATTATTCAAAACCGACACTT+CGG - chr4_4:29521285-29521304 None:intergenic 30.0%
!!! ACCTAAGAGGTACTTTTAAT+TGG + chr4_4:29521386-29521405 Msa0677140:intron 30.0%
!! ACCAATTAAAAGTACCTCTT+AGG - chr4_4:29521390-29521409 None:intergenic 30.0%
TGTCTTCACAATCAATTTGT+AGG + chr4_4:29521419-29521438 Msa0677140:intron 30.0%
TTGTCAAGTTAGTCGTTATA+AGG + chr4_4:29521478-29521497 Msa0677140:intron 30.0%
TTAGGAATCCTTAAAGAGTT+AGG + chr4_4:29521753-29521772 Msa0677140:intron 30.0%
TAGGAATCCTTAAAGAGTTA+GGG + chr4_4:29521754-29521773 Msa0677140:intron 30.0%
TTAATTCAGCCAAGTGAAGT+GGG - chr4_4:29519000-29519019 None:intergenic 35.0%
ATTAATTCAGCCAAGTGAAG+TGG - chr4_4:29519001-29519020 None:intergenic 35.0%
TTCACTTGGCTGAATTAATG+AGG + chr4_4:29519002-29519021 Msa0677140:five_prime_UTR 35.0%
GTTGCTCTTATATCCTAATG+TGG + chr4_4:29519123-29519142 Msa0677140:five_prime_UTR 35.0%
CAAAGTATGAAAGTAGTGAC+AGG - chr4_4:29519206-29519225 None:intergenic 35.0%
!! GTACTTTTTAGCAACTTCAG+TGG + chr4_4:29519329-29519348 Msa0677140:CDS 35.0%
! TACTTTGGCTTACTAAATGC+TGG + chr4_4:29519387-29519406 Msa0677140:CDS 35.0%
CATTACAATTGGGGGTTTAT+CGG + chr4_4:29519434-29519453 Msa0677140:CDS 35.0%
TAAATTGGGAAATGCGAGTT+AGG - chr4_4:29519531-29519550 None:intergenic 35.0%
GCATTTCCCAATTTACAATC+TGG + chr4_4:29519536-29519555 Msa0677140:intron 35.0%
CAATCTGGATACAGATAATG+TGG + chr4_4:29519551-29519570 Msa0677140:intron 35.0%
AAGATGCTGTTAGGTAGATA+GGG - chr4_4:29519589-29519608 None:intergenic 35.0%
TATTTCTCAGAACTTAGTCC+GGG + chr4_4:29519689-29519708 Msa0677140:intron 35.0%
! GTACATTTTATCATGCAACC+CGG - chr4_4:29519710-29519729 None:intergenic 35.0%
TGGGGTACAGTATTTGTAAT+GGG - chr4_4:29519744-29519763 None:intergenic 35.0%
ATGGGGTACAGTATTTGTAA+TGG - chr4_4:29519745-29519764 None:intergenic 35.0%
!! TTCTTCCACTGATTCACAAT+GGG - chr4_4:29519763-29519782 None:intergenic 35.0%
!! TTTCTTCCACTGATTCACAA+TGG - chr4_4:29519764-29519783 None:intergenic 35.0%
TTCACCAACTTATGCAAAAG+AGG + chr4_4:29519944-29519963 Msa0677140:intron 35.0%
! TCATCCTCTTTTGCATAAGT+TGG - chr4_4:29519951-29519970 None:intergenic 35.0%
ACTTATGCAAAAGAGGATGA+TGG + chr4_4:29519951-29519970 Msa0677140:intron 35.0%
CCTAATCTAGAAACAAGACA+TGG - chr4_4:29520047-29520066 None:intergenic 35.0%
!! CCATGTCTTGTTTCTAGATT+AGG + chr4_4:29520044-29520063 Msa0677140:intron 35.0%
!! GTCTTGTTTCTAGATTAGGT+CGG + chr4_4:29520048-29520067 Msa0677140:intron 35.0%
ATTTACTTACAGGCAAGAAC+TGG + chr4_4:29520112-29520131 Msa0677140:intron 35.0%
! ACTGGAAAACTTTCTGAGAA+AGG + chr4_4:29520130-29520149 Msa0677140:CDS 35.0%
AACGTTTACCATCTGAGAAA+CGG - chr4_4:29520215-29520234 None:intergenic 35.0%
GGGTCATAAGAAAAATGCAT+AGG - chr4_4:29520292-29520311 None:intergenic 35.0%
GACAAATTTGCAACAGTCAA+AGG - chr4_4:29520533-29520552 None:intergenic 35.0%
ACAAGGATTTAACCATAACG+GGG - chr4_4:29520618-29520637 None:intergenic 35.0%
!! AGGTGTTACTCTAATTGTCA+TGG + chr4_4:29520747-29520766 Msa0677140:intron 35.0%
TGTTACTCTAATTGTCATGG+TGG + chr4_4:29520750-29520769 Msa0677140:intron 35.0%
GTTACTCTAATTGTCATGGT+GGG + chr4_4:29520751-29520770 Msa0677140:intron 35.0%
TGCAACACAGCATTTAGAAA+TGG - chr4_4:29520942-29520961 None:intergenic 35.0%
AACTATGATTGTAGGTTCAC+TGG + chr4_4:29520997-29521016 Msa0677140:intron 35.0%
GCTACCATATTCTATGGATA+TGG + chr4_4:29521030-29521049 Msa0677140:CDS 35.0%
! TCCAGTTTTCATCTGCATTT+TGG + chr4_4:29521089-29521108 Msa0677140:intron 35.0%
! CCAGTTTTCATCTGCATTTT+GGG + chr4_4:29521090-29521109 Msa0677140:intron 35.0%
AGATAACATGATTGCTCAAG+AGG - chr4_4:29521308-29521327 None:intergenic 35.0%
AAATCAATAGCTGACCTAAG+AGG + chr4_4:29521373-29521392 Msa0677140:intron 35.0%
! ATCTCTACTCTAGTTGATGT+GGG - chr4_4:29521456-29521475 None:intergenic 35.0%
AAATGCTAACGAGTGTCTTA+AGG + chr4_4:29521629-29521648 Msa0677140:intron 35.0%
AATGCTAACGAGTGTCTTAA+GGG + chr4_4:29521630-29521649 Msa0677140:intron 35.0%
CCTTTAACCCTAACTCTTTA+AGG - chr4_4:29521764-29521783 None:intergenic 35.0%
CCTTAAAGAGTTAGGGTTAA+AGG + chr4_4:29521761-29521780 Msa0677140:intron 35.0%
ACCAGATGTCTAAACTTCAT+CGG - chr4_4:29521925-29521944 None:intergenic 35.0%
CACTAAAGGTCAACCACATT+AGG - chr4_4:29519139-29519158 None:intergenic 40.0%
AGTGACATGATTGTCAATGC+AGG + chr4_4:29519155-29519174 Msa0677140:exon 40.0%
GTGACATGATTGTCAATGCA+GGG + chr4_4:29519156-29519175 Msa0677140:exon 40.0%
!! GGAATGCTTACTAGTTTGCT+TGG + chr4_4:29519177-29519196 Msa0677140:CDS 40.0%
CTTTGCCAAGAAGAGAGAAA+AGG + chr4_4:29519221-29519240 Msa0677140:CDS 40.0%
! TGCTTCCTTTTCTCTCTTCT+TGG - chr4_4:29519229-29519248 None:intergenic 40.0%
GAAGAGAGAAAAGGAAGCAA+TGG + chr4_4:29519230-29519249 Msa0677140:CDS 40.0%
CATTGTTCAGTTGGCATTAG+CGG + chr4_4:29519290-29519309 Msa0677140:CDS 40.0%
! GTTGCTAAAAAGTACGGCAA+AGG - chr4_4:29519324-29519343 None:intergenic 40.0%
GCTTACTAAATGCTGGAATC+TGG + chr4_4:29519394-29519413 Msa0677140:CDS 40.0%
GGAAATGCGAGTTAGGAAAT+CGG - chr4_4:29519524-29519543 None:intergenic 40.0%
AGATGCTGTTAGGTAGATAG+GGG - chr4_4:29519588-29519607 None:intergenic 40.0%
CAAGATGCTGTTAGGTAGAT+AGG - chr4_4:29519590-29519609 None:intergenic 40.0%
GACAGCTATGACAAAGGAAA+TGG - chr4_4:29519620-29519639 None:intergenic 40.0%
!! TCTTCCACTGATTCACAATG+GGG - chr4_4:29519762-29519781 None:intergenic 40.0%
!! TGTTTCTAGATTAGGTCGGA+TGG + chr4_4:29520052-29520071 Msa0677140:intron 40.0%
TGGAATTGAAGCAGGGAAAT+AGG + chr4_4:29520072-29520091 Msa0677140:intron 40.0%
! TTGTTGGTGGAATATCTGGA+TGG + chr4_4:29520161-29520180 Msa0677140:CDS 40.0%
CTGCTACATTACTCTTCATG+TGG + chr4_4:29520185-29520204 Msa0677140:CDS 40.0%
ACGTTTACCATCTGAGAAAC+GGG - chr4_4:29520214-29520233 None:intergenic 40.0%
CTCAATCCTGAGAACATGAA+AGG + chr4_4:29520342-29520361 Msa0677140:CDS 40.0%
TCACGAATGAATAAAGCACG+TGG - chr4_4:29520420-29520439 None:intergenic 40.0%
! CTCAGGAAATTTTCAGCGAA+TGG - chr4_4:29520584-29520603 None:intergenic 40.0%
CAAGGATTTAACCATAACGG+GGG - chr4_4:29520617-29520636 None:intergenic 40.0%
CCCAAAATGCAGATGAAAAC+TGG - chr4_4:29521093-29521112 None:intergenic 40.0%
!! TTTCATCTGCATTTTGGGTC+TGG + chr4_4:29521095-29521114 Msa0677140:intron 40.0%
AAATTAACCCACCGAAGTGT+CGG + chr4_4:29521271-29521290 Msa0677140:intron 40.0%
! CATCTCTACTCTAGTTGATG+TGG - chr4_4:29521457-29521476 None:intergenic 40.0%
AACTTGTGCATTCAACGCAT+CGG + chr4_4:29521690-29521709 Msa0677140:intron 40.0%
TTATGACAGGAATGGCTTTC+TGG + chr4_4:29521808-29521827 Msa0677140:intron 40.0%
!!! TCTCTACGTGACTTGGTTTT+TGG + chr4_4:29521870-29521889 Msa0677140:CDS 40.0%
ACCGATGAAGTTTAGACATC+TGG + chr4_4:29521921-29521940 Msa0677140:three_prime_UTR 40.0%
CAATGACTCAATCCCAAGAT+GGG - chr4_4:29522056-29522075 None:intergenic 40.0%
TCAATGACTCAATCCCAAGA+TGG - chr4_4:29522057-29522076 None:intergenic 40.0%
TCTTGCATACCCACTTCACT+TGG + chr4_4:29518988-29519007 Msa0677140:five_prime_UTR 45.0%
TTAATCAAACATGCACGGCG+TGG + chr4_4:29519099-29519118 Msa0677140:five_prime_UTR 45.0%
ACTTCAGTGGTTGTAGTGTC+AGG + chr4_4:29519342-29519361 Msa0677140:CDS 45.0%
ACTAATACTAGGCTGGGAGA+AGG - chr4_4:29519484-29519503 None:intergenic 45.0%
ATGACAAAGGAAATGGCACC+AGG - chr4_4:29519613-29519632 None:intergenic 45.0%
TTCCTTTGTCATAGCTGTCG+TGG + chr4_4:29519621-29519640 Msa0677140:CDS 45.0%
TGTACCCCATTGTGAATCAG+TGG + chr4_4:29519755-29519774 Msa0677140:intron 45.0%
GACAAGCCTTTCATGTTCTC+AGG - chr4_4:29520351-29520370 None:intergenic 45.0%
! TCTATGTTGCTTGCGATGCT+TGG + chr4_4:29520378-29520397 Msa0677140:CDS 45.0%
TTGCTTGCGATGCTTGGAAA+TGG + chr4_4:29520384-29520403 Msa0677140:CDS 45.0%
GTTACTTACAACCCCCGTTA+TGG + chr4_4:29520603-29520622 Msa0677140:intron 45.0%
! ACTCTAATTGTCATGGTGGG+TGG + chr4_4:29520754-29520773 Msa0677140:intron 45.0%
!! TAGGTTCACTGGTTCATCGT+GGG + chr4_4:29521008-29521027 Msa0677140:intron 45.0%
! TCGTGGGCTACCATATTCTA+TGG + chr4_4:29521024-29521043 Msa0677140:CDS 45.0%
TTGCGTTCACTTACAGGAAC+AGG - chr4_4:29521068-29521087 None:intergenic 45.0%
TTCTTCTTGGCAGCAACTGT+CGG + chr4_4:29521195-29521214 Msa0677140:CDS 45.0%
!! GACACTTCGGTGGGTTAATT+TGG - chr4_4:29521272-29521291 None:intergenic 45.0%
TTCAAAACCGACACTTCGGT+GGG - chr4_4:29521281-29521300 None:intergenic 45.0%
ATTCAAAACCGACACTTCGG+TGG - chr4_4:29521282-29521301 None:intergenic 45.0%
GCATGGTTACAGTTCACCTT+TGG + chr4_4:29521845-29521864 Msa0677140:CDS 45.0%
AAGTCACGTAGAGAAGCCAA+AGG - chr4_4:29521864-29521883 None:intergenic 45.0%
! TTTGGCTTCTCTACGTGACT+TGG + chr4_4:29521863-29521882 Msa0677140:CDS 45.0%
AGTGTGGATCAAGCATGAGA+GGG - chr4_4:29521951-29521970 None:intergenic 45.0%
!!! ATTAGTTTTTTTTTTTTTTT+TGG + chr4_4:29520643-29520662 Msa0677140:intron 5.0%
! GCAATGGTAGTGCAGACACT+TGG + chr4_4:29519246-29519265 Msa0677140:CDS 50.0%
! ATGCTGGAATCTGGCGCTTT+TGG + chr4_4:29519403-29519422 Msa0677140:CDS 50.0%
! TGCTGGAATCTGGCGCTTTT+GGG + chr4_4:29519404-29519423 Msa0677140:CDS 50.0%
CTACCTAACAGCATCTTGCC+TGG + chr4_4:29519592-29519611 Msa0677140:CDS 50.0%
AGCCACGACAGCTATGACAA+AGG - chr4_4:29519626-29519645 None:intergenic 50.0%
AGGTCGGATGGAATTGAAGC+AGG + chr4_4:29520064-29520083 Msa0677140:intron 50.0%
GGTCGGATGGAATTGAAGCA+GGG + chr4_4:29520065-29520084 Msa0677140:intron 50.0%
ACGGGGGTTGTAAGTAACTC+AGG - chr4_4:29520601-29520620 None:intergenic 50.0%
!! CTAATTGTCATGGTGGGTGG+TGG + chr4_4:29520757-29520776 Msa0677140:intron 50.0%
!! GTAGGTTCACTGGTTCATCG+TGG + chr4_4:29521007-29521026 Msa0677140:intron 50.0%
CTGGACTTGCGTTCACTTAC+AGG - chr4_4:29521074-29521093 None:intergenic 50.0%
!! CAACTGTCGGTTTGGTCTCA+TGG + chr4_4:29521208-29521227 Msa0677140:CDS 50.0%
!! GTCGGTTTGGTCTCATGGAT+AGG + chr4_4:29521213-29521232 Msa0677140:CDS 50.0%
TGGAGAGACAGTGTAGTGCA+TGG + chr4_4:29521828-29521847 Msa0677140:CDS 50.0%
CAGTGTGGATCAAGCATGAG+AGG - chr4_4:29521952-29521971 None:intergenic 50.0%
GCTGCAGATGCAATACAGTG+TGG - chr4_4:29521967-29521986 None:intergenic 50.0%
GTATTGCATCTGCAGCACAC+AGG + chr4_4:29521971-29521990 Msa0677140:three_prime_UTR 50.0%
ACACCAGTCTTCTCCCATCT+TGG + chr4_4:29522040-29522059 Msa0677140:three_prime_UTR 50.0%
CACCAGTCTTCTCCCATCTT+GGG + chr4_4:29522041-29522060 Msa0677140:three_prime_UTR 50.0%
ATCCCAAGATGGGAGAAGAC+TGG - chr4_4:29522046-29522065 None:intergenic 50.0%
GCACCAGGCAAGATGCTGTT+AGG - chr4_4:29519598-29519617 None:intergenic 55.0%
AGCTGTCGTGGCTGTTACCA+TGG + chr4_4:29519633-29519652 Msa0677140:CDS 55.0%
GTGGATGCCCGTTTCTCAGA+TGG + chr4_4:29520204-29520223 Msa0677140:CDS 55.0%
! CTTGGCAGCAACTGTCGGTT+TGG + chr4_4:29521200-29521219 Msa0677140:CDS 55.0%
GTGGATCAAGCATGAGAGGG+AGG - chr4_4:29521948-29521967 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 29518970 29522236 29518970 ID=Msa0677140;Name=Msa0677140
chr4_4 mRNA 29518970 29522236 29518970 ID=Msa0677140-mRNA-1;Parent=Msa0677140;Name=Msa0677140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=201|1|1|1|1|1|7|331|273
chr4_4 exon 29518970 29519467 29518970 ID=Msa0677140-mRNA-1:exon:7574;Parent=Msa0677140-mRNA-1
chr4_4 exon 29519565 29519654 29519565 ID=Msa0677140-mRNA-1:exon:7575;Parent=Msa0677140-mRNA-1
chr4_4 exon 29520124 29520225 29520124 ID=Msa0677140-mRNA-1:exon:7576;Parent=Msa0677140-mRNA-1
chr4_4 exon 29520330 29520448 29520330 ID=Msa0677140-mRNA-1:exon:7577;Parent=Msa0677140-mRNA-1
chr4_4 exon 29521011 29521073 29521011 ID=Msa0677140-mRNA-1:exon:7578;Parent=Msa0677140-mRNA-1
chr4_4 exon 29521173 29521234 29521173 ID=Msa0677140-mRNA-1:exon:7579;Parent=Msa0677140-mRNA-1
chr4_4 exon 29521817 29522236 29521817 ID=Msa0677140-mRNA-1:exon:7580;Parent=Msa0677140-mRNA-1
chr4_4 five_prime_UTR 29518970 29519170 29518970 ID=Msa0677140-mRNA-1:five_prime_utr;Parent=Msa0677140-mRNA-1
chr4_4 CDS 29519171 29519467 29519171 ID=Msa0677140-mRNA-1:cds;Parent=Msa0677140-mRNA-1
chr4_4 CDS 29519565 29519654 29519565 ID=Msa0677140-mRNA-1:cds;Parent=Msa0677140-mRNA-1
chr4_4 CDS 29520124 29520225 29520124 ID=Msa0677140-mRNA-1:cds;Parent=Msa0677140-mRNA-1
chr4_4 CDS 29520330 29520448 29520330 ID=Msa0677140-mRNA-1:cds;Parent=Msa0677140-mRNA-1
chr4_4 CDS 29521011 29521073 29521011 ID=Msa0677140-mRNA-1:cds;Parent=Msa0677140-mRNA-1
chr4_4 CDS 29521173 29521234 29521173 ID=Msa0677140-mRNA-1:cds;Parent=Msa0677140-mRNA-1
chr4_4 CDS 29521817 29521905 29521817 ID=Msa0677140-mRNA-1:cds;Parent=Msa0677140-mRNA-1
chr4_4 three_prime_UTR 29521906 29522236 29521906 ID=Msa0677140-mRNA-1:three_prime_utr;Parent=Msa0677140-mRNA-1
Gene Sequence

>Msa0677140

ATGCAGGGAATGCTTACTAGTTTGCTTGGAAACCTGTCACTACTTTCATACTTTGCCAAGAAGAGAGAAAAGGAAGCAATGGTAGTGCAGACACTTGGTGTAATTTCAACATATGTTGTCATTGTTCAGTTGGCATTAGCGGAATCTATGCCTTTGCCGTACTTTTTAGCAACTTCAGTGGTTGTAGTGTCAGGTCTTTTTCTGAATTTCATGAATTACTTTGGCTTACTAAATGCTGGAATCTGGCGCTTTTGGGAAGATTTCATTACAATTGGGGGTTTATCGGTGCTTCCTCAAATAATGTGGTCTACATTTGTCCCCTATCTACCTAACAGCATCTTGCCTGGTGCCATTTCCTTTGTCATAGCTGTCGTGGCTGTTACCATGGCAAGAACTGGAAAACTTTCTGAGAAAGGTGTTAAATTTGTTGGTGGAATATCTGGATGGACTGCTACATTACTCTTCATGTGGATGCCCGTTTCTCAGATGTGGACAAATTTTCTCAATCCTGAGAACATGAAAGGCTTGTCTGCTTTTTCTATGTTGCTTGCGATGCTTGGAAATGGACTCATGCTTCCACGTGCTTTATTCATTCGTGATTTCATGTGGTTCACTGGTTCATCGTGGGCTACCATATTCTATGGATATGGGAATCTTGCATGCCTGTTCCTTTTAAACATTATCAACAAGGAATTCTTCTTGGCAGCAACTGTCGGTTTGGTCTCATGGATAGGAATGGCTTTCTGGAGAGACAGTGTAGTGCATGGTTACAGTTCACCTTTGGCTTCTCTACGTGACTTGGTTTTTGGATCTCAAATTTAA

Protein sequence

>Msa0677140

MQGMLTSLLGNLSLLSYFAKKREKEAMVVQTLGVISTYVVIVQLALAESMPLPYFLATSVVVVSGLFLNFMNYFGLLNAGIWRFWEDFITIGGLSVLPQIMWSTFVPYLPNSILPGAISFVIAVVAVTMARTGKLSEKGVKFVGGISGWTATLLFMWMPVSQMWTNFLNPENMKGLSAFSMLLAMLGNGLMLPRALFIRDFMWFTGSSWATIFYGYGNLACLFLLNIINKEFFLAATVGLVSWIGMAFWRDSVVHGYSSPLASLRDLVFGSQI*