AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108500 MtrunA17_Chr1g0165651 98.634 952 12 1 3 954 4 954 0.0 1940
Msa0108500 MtrunA17_Chr7g0257921 35.139 683 372 17 256 928 13 634 1.13e-107 347
Msa0108500 MtrunA17_Chr5g0400101 34.989 463 261 15 472 925 470 901 2.83e-56 212
Msa0108500 MtrunA17_Chr5g0422511 31.081 444 240 12 490 911 330 729 9.85e-40 158
Msa0108500 MtrunA17_Chr7g0228141 28.274 481 259 12 447 905 336 752 3.41e-36 147
Msa0108500 MtrunA17_Chr5g0394941 29.106 481 259 18 469 923 385 809 3.96e-36 147
Msa0108500 MtrunA17_Chr2g0304151 29.019 479 259 17 470 923 387 809 7.15e-36 147
Msa0108500 MtrunA17_Chr8g0343741 25.461 597 291 22 486 950 707 1281 7.23e-30 128
Msa0108500 MtrunA17_Chr2g0334291 27.811 507 235 16 524 922 1578 2061 7.43e-30 128
Msa0108500 MtrunA17_Chr1g0173701 32.812 256 148 7 664 911 111 350 1.56e-26 113
Msa0108500 MtrunA17_Chr5g0433321 33.663 303 168 10 630 919 557 839 1.05e-25 114
Msa0108500 MtrunA17_Chr8g0375181 33.333 294 166 10 630 911 631 906 2.44e-25 114
Msa0108500 MtrunA17_Chr3g0109551 31.293 294 173 9 630 911 614 890 4.27e-25 112
Msa0108500 MtrunA17_Chr3g0109541 31.447 318 186 11 607 911 557 855 9.04e-25 111
Msa0108500 MtrunA17_Chr5g0433371 32.667 300 175 10 630 919 581 863 2.34e-24 110
Msa0108500 MtrunA17_Chr5g0433471 32.237 304 172 10 630 919 579 862 4.94e-24 108
Msa0108500 MtrunA17_Chr5g0433421 32.660 297 164 11 630 911 664 939 5.41e-23 105
Msa0108500 MtrunA17_Chr8g0375151 31.399 293 170 11 630 911 526 798 5.94e-23 106
Msa0108500 MtrunA17_Chr5g0433361 31.864 295 160 13 630 911 559 825 7.82e-21 98.6
Msa0108500 MtrunA17_Chr3g0094211 28.053 303 190 9 630 921 547 832 4.24e-20 96.7
Msa0108500 MtrunA17_Chr8g0375191 30.795 302 173 12 623 911 551 829 6.87e-20 96.3
Msa0108500 MtrunA17_Chr5g0433511 29.070 258 153 10 630 875 598 837 6.50e-12 69.7
Msa0108500 MtrunA17_Chr5g0433331 36.735 98 58 1 826 919 8 105 1.77e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108500 AT5G35970.1 73.760 907 217 4 65 953 57 960 0.0 1349
Msa0108500 AT2G03270.1 34.453 685 375 16 256 928 7 629 2.90e-110 354
Msa0108500 AT5G47010.1 35.332 467 254 15 472 925 482 913 3.33e-57 215
Msa0108500 AT4G15570.3 30.297 472 250 17 489 933 337 756 9.04e-39 156
Msa0108500 AT4G15570.1 30.297 472 250 17 489 933 337 756 9.04e-39 156
Msa0108500 AT4G15570.2 30.297 472 250 17 489 933 248 667 1.31e-38 155
Msa0108500 AT4G15570.4 30.297 472 250 17 489 933 248 667 1.31e-38 155
Msa0108500 AT1G08840.1 28.942 463 256 12 473 925 882 1281 1.10e-37 154
Msa0108500 AT1G08840.4 28.942 463 256 12 473 925 914 1313 1.19e-37 154
Msa0108500 AT1G08840.3 28.942 463 256 12 473 925 917 1316 1.27e-37 153
Msa0108500 AT1G08840.2 28.942 463 256 12 473 925 901 1300 1.34e-37 153
Msa0108500 AT1G05460.2 29.556 450 244 16 493 921 412 809 1.59e-32 136
Msa0108500 AT1G05460.1 29.556 450 244 16 493 921 412 809 2.34e-32 136
Msa0108500 AT2G19120.1 32.440 336 190 12 633 952 753 1067 8.91e-30 128
Msa0108500 AT1G16800.3 27.778 504 219 19 525 911 1429 1904 5.27e-27 119
Msa0108500 AT1G16800.2 27.778 504 219 19 525 911 1499 1974 5.42e-27 119
Msa0108500 AT1G16800.1 27.778 504 219 19 525 911 1387 1862 6.27e-27 119
Msa0108500 AT4G30100.2 26.654 544 255 20 496 911 660 1187 3.57e-26 117
Msa0108500 AT4G30100.1 26.654 544 255 20 496 911 660 1187 3.57e-26 117
Msa0108500 AT5G52090.1 27.424 361 240 9 559 911 270 616 4.39e-26 115
Msa0108500 AT5G37150.1 30.743 296 172 10 630 911 503 779 7.24e-25 112
Msa0108500 AT5G37140.1 30.128 312 183 11 630 928 361 650 4.26e-23 105
Msa0108500 AT1G65780.1 32.459 305 181 8 626 919 536 826 7.06e-23 105
Msa0108500 AT1G65810.1 30.952 336 195 12 600 919 497 811 1.56e-22 104
Msa0108500 AT1G65810.2 30.952 336 195 12 600 919 497 811 1.62e-22 104
Msa0108500 AT1G65810.3 30.952 336 195 12 600 919 497 811 2.02e-22 104
Msa0108500 AT5G37030.1 27.174 460 259 19 473 912 198 601 3.04e-22 103
Msa0108500 AT4G05540.1 30.068 296 174 10 630 911 407 683 1.21e-21 101
Msa0108500 AT5G37165.1 26.207 290 194 5 630 911 89 366 2.41e-21 98.6

Find 211 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACTTTCTCTAAACTATT+TGG 0.122471 1_3:-20046436 Msa0108500:CDS
GTCGAAACCGATTGAGTTCT+TGG 0.178361 1_3:-20046959 Msa0108500:CDS
GAATCCAATGTTACCTTCTA+TGG 0.206751 1_3:-20043436 Msa0108500:CDS
CTTAAGGAGCTTGCAAATTC+AGG 0.240723 1_3:-20047958 Msa0108500:intron
CCCCTCAAACAATTGCTTAT+AGG 0.261799 1_3:+20043367 None:intergenic
ATACTCATGCATGAAAATTA+TGG 0.288033 1_3:-20043244 Msa0108500:three_prime_UTR
TGCTGAGTTACTTGAAGATT+TGG 0.290589 1_3:-20048214 Msa0108500:CDS
ATGCATAACACTTGCATCTA+TGG 0.290906 1_3:+20043154 None:intergenic
AGAAGAATAGTTTGGTAGAT+TGG 0.291762 1_3:-20045833 Msa0108500:CDS
TCTGTTGTTGCAACTCTATT+CGG 0.305233 1_3:-20045882 Msa0108500:CDS
TGAAGATGATGAAGCTAGTT+TGG 0.307407 1_3:+20048554 None:intergenic
TGAGAAGTTCTGACATGTTT+TGG 0.312836 1_3:+20047061 None:intergenic
CAATGCAGCTGTTGATAATA+TGG 0.324332 1_3:-20045610 Msa0108500:CDS
CAGCGTTTCGCCTGCAATAT+AGG 0.325159 1_3:+20045189 None:intergenic
CTAGCTTCATCATCTTCATT+TGG 0.327143 1_3:-20048549 Msa0108500:CDS
GGGAAAGTCGCTAAAGAAAA+AGG 0.330531 1_3:-20045364 Msa0108500:CDS
AAGTGTTATGCATGATACTA+TGG 0.335856 1_3:-20043144 Msa0108500:three_prime_UTR
CCCTACCAAAGTGTCGAATA+TGG 0.337657 1_3:+20043508 None:intergenic
GCGAAACGCTGCATTCTTGC+TGG 0.342576 1_3:-20045177 Msa0108500:CDS
ATAATTACCAGCATAAATTA+AGG 0.344105 1_3:+20044283 None:intergenic
AAGGCATTAGAAGGTGGTTT+AGG 0.346964 1_3:-20045117 Msa0108500:CDS
CACTCTTTCACCCGGAGAAA+TGG 0.354961 1_3:-20046581 Msa0108500:CDS
GACTGAACTACAATAGCATT+TGG 0.358638 1_3:+20044035 None:intergenic
AGCATTTAGCTTTCGAATCA+TGG 0.361465 1_3:+20045269 None:intergenic
CCAACATCTTTCCATCCAAT+AGG 0.361650 1_3:+20048297 None:intergenic
GTTGCAACAACAGAAATTGA+TGG 0.369280 1_3:+20045891 None:intergenic
TCGGAAGCATCATCTTGTTT+AGG 0.371391 1_3:+20046985 None:intergenic
TATTGAAAGGGATGTTGAAT+TGG 0.371567 1_3:-20047037 Msa0108500:CDS
GTTGAAAAGCTTTCAAATGT+TGG 0.374768 1_3:-20045588 Msa0108500:CDS
CAACATCTTTCCATCCAATA+GGG 0.376611 1_3:+20048298 None:intergenic
ACTTCAGTACCGGCAGCTTC+AGG 0.378086 1_3:+20043963 None:intergenic
AACCCTCCTCCAAAACTATC+TGG 0.381690 1_3:+20043471 None:intergenic
TTGCTGGATTCCTATATTGC+AGG 0.383652 1_3:-20045199 Msa0108500:CDS
GGGATCGGCTGCTCCGGTAT+TGG 0.385776 1_3:+20045290 None:intergenic
TTTGGAGGAGGGTTTGGACT+TGG 0.385868 1_3:-20043462 Msa0108500:CDS
AGAGGAAGAAATCTGATCTA+AGG 0.393500 1_3:-20045455 Msa0108500:CDS
ATAGGAACAGCATTCAAATA+AGG 0.395012 1_3:+20048132 None:intergenic
GAAGAATAGTTTGGTAGATT+GGG 0.397230 1_3:-20045832 Msa0108500:CDS
CACGTAGAACCAGATAGTTT+TGG 0.398663 1_3:-20043480 Msa0108500:CDS
AACAGTAGCATCAAAGTCCT+TGG 0.404986 1_3:-20045523 Msa0108500:CDS
GGAATAAATATTGTTCGAGT+TGG 0.408855 1_3:-20045567 Msa0108500:CDS
AAAACTCCTTGGACACTCTT+AGG 0.412479 1_3:+20047138 None:intergenic
ACAACTGGTGTCATGAGTTC+AGG 0.413264 1_3:+20043101 None:intergenic
AGGCAATTGAACCGTCTTGC+TGG 0.414062 1_3:-20045215 Msa0108500:CDS
CACATAGTTCTTGCTGAGGC+TGG 0.415148 1_3:+20046926 None:intergenic
ACGTGAGAGTATGAAATCTA+TGG 0.416536 1_3:-20048253 Msa0108500:CDS
GTAAAGGTTTGGTTGAAGAT+TGG 0.417519 1_3:-20048005 Msa0108500:CDS
TTCCCAACTGTTTCAGAAGT+TGG 0.421180 1_3:+20045382 None:intergenic
ATGGCTTGAGAAGAATAGTT+TGG 0.421263 1_3:-20045841 Msa0108500:CDS
AGTTGAACTTGAGCAACATA+TGG 0.426082 1_3:+20044011 None:intergenic
AGATATGCAGAGTAAAGGTT+TGG 0.428977 1_3:-20048016 Msa0108500:CDS
TTCTGAAATGAAACAAAGAA+TGG 0.429448 1_3:-20048187 Msa0108500:CDS
GTGCGCATTGATCGTATTCA+AGG 0.431412 1_3:-20046406 Msa0108500:CDS
GAATGATGCCATTGCAAGTT+GGG 0.434868 1_3:-20045019 Msa0108500:CDS
TCAGTCTTGGAAATTGCTTA+AGG 0.436272 1_3:-20047974 Msa0108500:CDS
TATTATTTGCTTGAGTAAAC+CGG 0.436762 1_3:+20045680 None:intergenic
CAGCAGAGAGCAATTGCGTT+AGG 0.442940 1_3:-20045759 Msa0108500:CDS
CTTCTCGTGCATGAGAATAT+AGG 0.443297 1_3:-20048324 Msa0108500:CDS
CATCTAGATCAGGCTGGAAC+AGG 0.444736 1_3:-20044356 Msa0108500:CDS
GAATAAGAAGAGGCCACTAT+TGG 0.445426 1_3:-20045733 Msa0108500:CDS
CAAGGAGTTGTGGAAAATCT+AGG 0.450398 1_3:-20046508 Msa0108500:CDS
GATAGAAATCAGTACCTCAT+AGG 0.456201 1_3:+20046366 None:intergenic
CTGGTGTTATTCAAGATTGA+AGG 0.459300 1_3:-20046625 Msa0108500:CDS
ATCCAAGGACCTCCCGGTAC+AGG 0.464985 1_3:-20045708 Msa0108500:CDS
GCCTATAAGCAATTGTTTGA+GGG 0.466799 1_3:-20043368 Msa0108500:three_prime_UTR
TTGGGAGCTGTAGGATTCCT+TGG 0.468710 1_3:-20043639 Msa0108500:CDS
CTTCAAGATATGCAGAGTAA+AGG 0.468784 1_3:-20048021 Msa0108500:CDS
CATATTATCAACAGCTGCAT+TGG 0.469527 1_3:+20045611 None:intergenic
TTGCAACACTAATCCATAGA+AGG 0.470626 1_3:+20043423 None:intergenic
TGCCTATAAGCAATTGTTTG+AGG 0.471982 1_3:-20043369 Msa0108500:three_prime_UTR
CCAAATAGTTTAGAGAAAGT+AGG 0.472362 1_3:+20046436 None:intergenic
GAGTTTAATACCTTAACAAA+AGG 0.472809 1_3:+20044925 None:intergenic
CATTGATCGTATTCAAGGAT+TGG 0.479648 1_3:-20046401 Msa0108500:CDS
TTCTTGCATGCAAGGAGTTG+TGG 0.480322 1_3:-20046518 Msa0108500:CDS
TGCCTGTACCGGGAGGTCCT+TGG 0.481597 1_3:+20045706 None:intergenic
CATTGCAAGTTGGGCTTCGA+AGG 0.482049 1_3:-20045010 Msa0108500:CDS
CGCATTTACAATTTCTCCCA+AGG 0.484487 1_3:+20045506 None:intergenic
GTTCTTGCTGAGGCTGGCTA+TGG 0.485427 1_3:+20046932 None:intergenic
AGGGATGATTCATTAGCTGC+AGG 0.486808 1_3:-20045411 Msa0108500:CDS
ACTGAACTACAATAGCATTT+GGG 0.487577 1_3:+20044036 None:intergenic
TGAAGTTCTATCTAGTGCTC+AGG 0.488890 1_3:-20045325 Msa0108500:CDS
AAGATCTAAGACAATGTTTG+AGG 0.490016 1_3:-20045431 Msa0108500:CDS
TCTGAAATGAAACAAAGAAT+GGG 0.491088 1_3:-20048186 Msa0108500:CDS
AAAATATCACAGGAGCTAGT+TGG 0.492157 1_3:+20045145 None:intergenic
TCTCACACAAACCATTTCTC+CGG 0.493829 1_3:+20046570 None:intergenic
GCATTTAGCTTTCGAATCAT+GGG 0.496716 1_3:+20045270 None:intergenic
GAGAATATAGGTGACCCTAT+TGG 0.497072 1_3:-20048312 Msa0108500:CDS
AATCATGGGATCGGCTGCTC+CGG 0.497771 1_3:+20045284 None:intergenic
GTTGAACTTGAGCAACATAT+GGG 0.498421 1_3:+20044012 None:intergenic
CGCCAACTTCTGAAACAGTT+GGG 0.498428 1_3:-20045384 Msa0108500:CDS
CTCAATCGGTTTCGACGGAT+CGG 0.498763 1_3:+20046966 None:intergenic
AACCCTTTCACCTTGTTCCA+CGG 0.498978 1_3:+20045650 None:intergenic
ATCGGCTGCTCCGGTATTGG+TGG 0.499889 1_3:+20045293 None:intergenic
TGATGTTGTTGCAGCCTACA+TGG 0.499973 1_3:-20044451 Msa0108500:intron
TAAACCGGTCTTGCCTGTAC+CGG 0.501079 1_3:+20045695 None:intergenic
ATTCTTGTTCGTATTCTCAA+AGG 0.503307 1_3:+20048347 None:intergenic
GTTGTGCTTGCCACCAATAC+CGG 0.504279 1_3:-20045303 Msa0108500:CDS
CGCCGTGGAACAAGGTGAAA+GGG 0.506862 1_3:-20045652 Msa0108500:CDS
ATGCTTGCGCGCTCTTGTGA+TGG 0.509880 1_3:+20043593 None:intergenic
TGTCATAGATGAAGCTGGAC+AGG 0.510157 1_3:-20045235 Msa0108500:CDS
TAGGTACGATCAAACACATT+GGG 0.510293 1_3:-20043657 Msa0108500:CDS
AATGCTGTTCCTATGCCACT+TGG 0.510987 1_3:-20048123 Msa0108500:CDS
ACAGTAGCATCAAAGTCCTT+GGG 0.511117 1_3:-20045522 Msa0108500:CDS
GGCTGATACACTTACCTATG+AGG 0.511446 1_3:-20046380 Msa0108500:intron
GCCATATTCGACACTTTGGT+AGG 0.513271 1_3:-20043509 Msa0108500:CDS
CAGAACTTCTCAATATTGAA+AGG 0.513339 1_3:-20047050 Msa0108500:CDS
TGTCCATTCCTAAAACTCCT+TGG 0.515753 1_3:+20047127 None:intergenic
AATGCCATCAGTACCTCTAC+AGG 0.516644 1_3:-20046886 Msa0108500:intron
ATGAGAAAAGACAGTCTTGG+AGG 0.517016 1_3:+20044963 None:intergenic
CCTCCCGGTACAGGCAAGAC+CGG 0.518071 1_3:-20045699 Msa0108500:CDS
TTCTTGTTCGTATTCTCAAA+GGG 0.518235 1_3:+20048348 None:intergenic
AGGATTGGGAGGAATGCATC+TGG 0.522459 1_3:-20046644 Msa0108500:CDS
GTCTCATGTTACAATTATTG+TGG 0.524185 1_3:+20043211 None:intergenic
ATTGGCGTCAAACTCAGTCT+TGG 0.527994 1_3:-20047987 Msa0108500:CDS
TGGCTAACCAAGAACTCAAT+CGG 0.529869 1_3:+20046952 None:intergenic
AGAACTTCTCAATATTGAAA+GGG 0.529997 1_3:-20047049 Msa0108500:CDS
TTGCGAAGAGCATCTAGATC+AGG 0.532387 1_3:-20044366 Msa0108500:CDS
GACGGGGTTCCTGAAGCTGC+CGG 0.532397 1_3:-20043972 Msa0108500:CDS
CTCACACAAACCATTTCTCC+GGG 0.532657 1_3:+20046571 None:intergenic
CCGTATGGAAGTCTATCAAT+TGG 0.532960 1_3:-20044389 Msa0108500:CDS
ATGCGCCATATTCGACACTT+TGG 0.533794 1_3:-20043513 Msa0108500:CDS
TGGGCTTCGAAGGAGATGTA+TGG 0.534352 1_3:-20045000 Msa0108500:CDS
GTTACAACTTCTTGCATGCA+AGG 0.534893 1_3:-20046526 Msa0108500:CDS
CCTATTGGATGGAAAGATGT+TGG 0.535687 1_3:-20048297 Msa0108500:CDS
GTTCAATTGCAGCTCAGCAC+AGG 0.536033 1_3:-20047185 Msa0108500:intron
TTTAGGAATGGACAGAGAAA+GGG 0.536782 1_3:-20047118 Msa0108500:CDS
GCGCCGTGGAACAAGGTGAA+AGG 0.540009 1_3:-20045653 Msa0108500:CDS
CTTCGAAGCCCAACTTGCAA+TGG 0.540846 1_3:+20045011 None:intergenic
GGTCCTTGGATAACCAATAG+TGG 0.541765 1_3:+20045720 None:intergenic
AAAGAGTGGTAGGTGGCAAT+CGG 0.542226 1_3:+20046596 None:intergenic
CTCAGCACAGGGCAGTTGCA+AGG 0.542941 1_3:-20047173 Msa0108500:CDS
GAGCTGCAACTCTGCATGAA+GGG 0.544095 1_3:-20045077 Msa0108500:CDS
AGAGCTGCAACTCTGCATGA+AGG 0.548566 1_3:-20045078 Msa0108500:CDS
AAGATGAGAAAAGACAGTCT+TGG 0.548973 1_3:+20044960 None:intergenic
TGTTGAATTGGAGTTTACTC+AGG 0.549406 1_3:-20047025 Msa0108500:CDS
CCTATAAGCAATTGTTTGAG+GGG 0.551618 1_3:-20043367 Msa0108500:three_prime_UTR
AAACCGGTCTTGCCTGTACC+GGG 0.552229 1_3:+20045696 None:intergenic
ACAGGCTCGTTGTATAATGA+AGG 0.558434 1_3:-20044338 Msa0108500:CDS
GAGGATGTTGTTGACAAAGA+AGG 0.558454 1_3:+20048730 None:intergenic
TAGCTTTCGAATCATGGGAT+CGG 0.559505 1_3:+20045275 None:intergenic
ACGCCAACTTCTGAAACAGT+TGG 0.559556 1_3:-20045385 Msa0108500:CDS
ACTTCAAGACCAAGTGGCAT+AGG 0.563752 1_3:+20048114 None:intergenic
AGATCTAAGACAATGTTTGA+GGG 0.563780 1_3:-20045430 Msa0108500:CDS
CCACCTACCACTCTTTCACC+CGG 0.565373 1_3:-20046589 Msa0108500:CDS
TTGCAACTCTATTCGGCGAA+GGG 0.566204 1_3:-20045875 Msa0108500:CDS
CTTGACACTCGAATGCCGTA+TGG 0.566576 1_3:-20044404 Msa0108500:CDS
GTTGCAACTCTATTCGGCGA+AGG 0.568653 1_3:-20045876 Msa0108500:CDS
ATAACATGCGCCGTGGAACA+AGG 0.575282 1_3:-20045660 Msa0108500:CDS
TTGGTTATCCAAGGACCTCC+CGG 0.575336 1_3:-20045714 Msa0108500:CDS
GATGGCATTTAAATTACAGA+TGG 0.575768 1_3:+20046900 None:intergenic
TCAAACACATTGGGAGCTGT+AGG 0.575959 1_3:-20043648 Msa0108500:CDS
ACCTTGAAAACTATCAATTG+TGG 0.580698 1_3:+20043938 None:intergenic
AATTGTGGAAACTTCAGTAC+CGG 0.581431 1_3:+20043953 None:intergenic
TTGGTTGTCATAGATGAAGC+TGG 0.583914 1_3:-20045240 Msa0108500:CDS
GGGTCAAAGTGTTACAGCAA+AGG 0.584641 1_3:-20047098 Msa0108500:CDS
CGTTAGGTTTGAATAAGAAG+AGG 0.584662 1_3:-20045743 Msa0108500:CDS
CATTTCTCCGGGTGAAAGAG+TGG 0.585965 1_3:+20046582 None:intergenic
TTGCAATGGCATCATTCATA+CGG 0.586486 1_3:+20045025 None:intergenic
ACACAGCCTAAGAGTGTCCA+AGG 0.588984 1_3:-20047144 Msa0108500:CDS
TAATCCATAGAAGGTAACAT+TGG 0.591798 1_3:+20043432 None:intergenic
TATGGCGCATAAGTCTTGCT+AGG 0.591965 1_3:+20043526 None:intergenic
TGAATTGGAGTTTACTCAGG+AGG 0.593494 1_3:-20047022 Msa0108500:CDS
GCCTTTCTAGAAAATATCAC+AGG 0.593978 1_3:+20045135 None:intergenic
CCATATTCGACACTTTGGTA+GGG 0.594215 1_3:-20043508 Msa0108500:CDS
CGAGTGTCAAGCAGTAGCAG+AGG 0.594998 1_3:+20044416 None:intergenic
TGAATGATGCCATTGCAAGT+TGG 0.596245 1_3:-20045020 Msa0108500:CDS
TCTAGAAAGGCATTAGAAGG+TGG 0.596468 1_3:-20045123 Msa0108500:CDS
TTCAATTGCAGCTCAGCACA+GGG 0.597992 1_3:-20047184 Msa0108500:intron
ATATAGGTGACCCTATTGGA+TGG 0.598984 1_3:-20048308 Msa0108500:CDS
TTATCAACAGCTGCATTGGT+AGG 0.599783 1_3:+20045615 None:intergenic
CACAAACAGCAATGAAACAA+AGG 0.600512 1_3:-20048439 Msa0108500:CDS
GGGCACTGTGTTATCCATGT+AGG 0.602151 1_3:+20044437 None:intergenic
GCGAAGGGGAAGATGCTGCA+TGG 0.603321 1_3:-20045860 Msa0108500:CDS
ACATCAACTTGCTTCTTCTG+TGG 0.603336 1_3:-20048594 Msa0108500:CDS
AATACCTGTAGAGGTACTGA+TGG 0.603865 1_3:+20046882 None:intergenic
AGTGGTTAAGTATATAAGCA+TGG 0.604206 1_3:+20048681 None:intergenic
GTGTCACATAGTTCTTGCTG+AGG 0.609780 1_3:+20046922 None:intergenic
AGTGTTATGCATGATACTAT+GGG 0.610221 1_3:-20043143 Msa0108500:three_prime_UTR
GAGTGGTAGGTGGCAATCGG+TGG 0.614362 1_3:+20046599 None:intergenic
TCTCCGGGTGAAAGAGTGGT+AGG 0.619341 1_3:+20046586 None:intergenic
AGGCCACTATTGGTTATCCA+AGG 0.620754 1_3:-20045723 Msa0108500:CDS
TGATTCTTCTGCTATCGCCA+AGG 0.623622 1_3:+20043622 None:intergenic
TGCAACTCTATTCGGCGAAG+GGG 0.630223 1_3:-20045874 Msa0108500:CDS
GTCTTGCTAGGAACGTGTTG+TGG 0.630547 1_3:+20043538 None:intergenic
GAGTGTCAAGCAGTAGCAGA+GGG 0.632998 1_3:+20044417 None:intergenic
TCTCTGCTGAGATTTATCAA+AGG 0.633256 1_3:+20045773 None:intergenic
AAGAACTCAATCGGTTTCGA+CGG 0.634115 1_3:+20046961 None:intergenic
TGTGAGAACATGTGACAGCA+AGG 0.642149 1_3:-20046554 Msa0108500:CDS
CCAATTGATAGACTTCCATA+CGG 0.644576 1_3:+20044389 None:intergenic
GCAAATAATAACATGCGCCG+TGG 0.645010 1_3:-20045667 Msa0108500:CDS
GTAAAAGAGAATACCTGTAG+AGG 0.649202 1_3:+20046873 None:intergenic
GAAGAGCATCTAGATCAGGC+TGG 0.650620 1_3:-20044362 Msa0108500:CDS
ATGGCGTGACTCTAAAGCAA+CGG 0.651052 1_3:+20046465 None:intergenic
CAAGTAACTTCAAGACCAAG+TGG 0.651955 1_3:+20048108 None:intergenic
ATAGGTACGATCAAACACAT+TGG 0.652032 1_3:-20043658 Msa0108500:intron
ATGAAGGGATTCTCACCACT+AGG 0.660150 1_3:-20045062 Msa0108500:CDS
AATATAGGAATCCAGCAAGA+CGG 0.662472 1_3:+20045204 None:intergenic
GCTTCGAAGGAGATGTATGG+AGG 0.667867 1_3:-20044997 Msa0108500:CDS
TGAATAACAAACGTAAGACC+TGG 0.668047 1_3:+20048162 None:intergenic
ATGAAACAAAGAATGGGACC+AGG 0.673070 1_3:-20048180 Msa0108500:CDS
GTGGAAAATCTAGGTGACGA+TGG 0.673584 1_3:-20046499 Msa0108500:CDS
GTATTGTGTCGTTAACCTAG+TGG 0.677271 1_3:+20045047 None:intergenic
GTTGCTTTAGAGTCACGCCA+TGG 0.679288 1_3:-20046463 Msa0108500:CDS
TTGAACTTGAGCAACATATG+GGG 0.689568 1_3:+20044013 None:intergenic
TTTGAGGGACATGCTTGACG+GGG 0.689897 1_3:-20043988 Msa0108500:CDS
TAGTGTTGCAAGTGTGACAG+TGG 0.691939 1_3:-20043411 Msa0108500:three_prime_UTR
CCGGGTGAAAGAGTGGTAGG+TGG 0.693784 1_3:+20046589 None:intergenic
GTGTTATGCATGATACTATG+GGG 0.698502 1_3:-20043142 Msa0108500:three_prime_UTR
CCGGTCTTGCCTGTACCGGG+AGG 0.700623 1_3:+20045699 None:intergenic
TAGAGAAAGTAGGATCACCA+TGG 0.723561 1_3:+20046446 None:intergenic
GTGAGAACATGTGACAGCAA+GGG 0.734905 1_3:-20046553 Msa0108500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATATTTTTTTTTTTTT+GGG - chr1_3:20048520-20048539 Msa0108500:CDS 0.0%
!!! TTATATTTTTTTTTTTTTGG+GGG - chr1_3:20048522-20048541 Msa0108500:CDS 10.0%
!!! TTTTAGATTTTTTTTGTTCA+TGG + chr1_3:20043159-20043178 None:intergenic 15.0%
!! TTTATTTGTTTATCTAAAGA+TGG - chr1_3:20044164-20044183 Msa0108500:intron 15.0%
!!! TGGTTTTTGATATTTATATA+AGG - chr1_3:20044365-20044384 Msa0108500:CDS 15.0%
!!! GGTTTTTGATATTTATATAA+GGG - chr1_3:20044366-20044385 Msa0108500:CDS 15.0%
!! TTCAAAGTAAAATAGAATTT+GGG + chr1_3:20044490-20044509 None:intergenic 15.0%
!! TTTCAAAGTAAAATAGAATT+TGG + chr1_3:20044491-20044510 None:intergenic 15.0%
!!! ACTTATTTTTATTAGATGAA+TGG - chr1_3:20047378-20047397 Msa0108500:intron 15.0%
!! TAAAAATATTTATCATCGTT+TGG - chr1_3:20048121-20048140 Msa0108500:CDS 15.0%
!!! TATATTTTTTTTTTTTTGGG+GGG - chr1_3:20048523-20048542 Msa0108500:CDS 15.0%
!! TTCCAAAAAAAATTCAGTAA+TGG - chr1_3:20043242-20043261 Msa0108500:three_prime_UTR 20.0%
!!! TTCCATTACTGAATTTTTTT+TGG + chr1_3:20043247-20043266 None:intergenic 20.0%
!! ATAATCTCTAATAAGCTAAT+AGG + chr1_3:20043952-20043971 None:intergenic 20.0%
!! TACTAAAACAACATGAATAA+AGG - chr1_3:20044258-20044277 Msa0108500:intron 20.0%
!!! TTCACATCTTATATTTTTGT+TGG + chr1_3:20044597-20044616 None:intergenic 20.0%
!!! CATTTATGAACTTTTTAAAC+AGG - chr1_3:20045200-20045219 Msa0108500:CDS 20.0%
!!! TTATGTAAGTTGAAATTAAG+AGG - chr1_3:20045593-20045612 Msa0108500:CDS 20.0%
!! AAACTAAATTTATGCCAAAT+AGG + chr1_3:20045706-20045725 None:intergenic 20.0%
!! GAAAAATAATTAGCTCATAT+GGG + chr1_3:20045729-20045748 None:intergenic 20.0%
!! AGAAAAATAATTAGCTCATA+TGG + chr1_3:20045730-20045749 None:intergenic 20.0%
!!! CTTTTGTTATAGAAATAACT+TGG + chr1_3:20047060-20047079 None:intergenic 20.0%
!! TCAAATAAACCAATTCAAAT+AGG - chr1_3:20047222-20047241 Msa0108500:intron 20.0%
!! AAGTACATGTAGTATATATA+TGG + chr1_3:20047350-20047369 None:intergenic 20.0%
!! ATAATTACCAGCATAAATTA+AGG + chr1_3:20047584-20047603 None:intergenic 20.0%
!! AAAAGGAAAAACAAAGATAA+AGG + chr1_3:20047637-20047656 None:intergenic 20.0%
!!! ATGCAATAATTTCTTTTTCT+TGG + chr1_3:20047670-20047689 None:intergenic 20.0%
!!! GTTTCAACAAATTTTTTACT+TGG - chr1_3:20048010-20048029 Msa0108500:CDS 20.0%
!!! TACTTGGTGAAAAAATAAAA+TGG - chr1_3:20048026-20048045 Msa0108500:CDS 20.0%
!!! ACTTGGTGAAAAAATAAAAT+GGG - chr1_3:20048027-20048046 Msa0108500:CDS 20.0%
!! AACAAAGAAAATCAAGTATA+GGG + chr1_3:20048070-20048089 None:intergenic 20.0%
!! AAACAAAGAAAATCAAGTAT+AGG + chr1_3:20048071-20048090 None:intergenic 20.0%
!!! TAGATTTTTTTTGTTCATGG+AGG + chr1_3:20043156-20043175 None:intergenic 25.0%
!!! CAGTTTTTGTTATTCAATAG+TGG + chr1_3:20043204-20043223 None:intergenic 25.0%
!!! TTCTGAAATGAAACAAAGAA+TGG - chr1_3:20043677-20043696 Msa0108500:intron 25.0%
!! TCTGAAATGAAACAAAGAAT+GGG - chr1_3:20043678-20043697 Msa0108500:intron 25.0%
! TGAAAATGATCAAAAAGAGT+AGG + chr1_3:20043804-20043823 None:intergenic 25.0%
! AATCACTTGTAAGATTGTTT+AGG - chr1_3:20043982-20044001 Msa0108500:CDS 25.0%
! AACAACATGAATAAAGGTTA+AGG - chr1_3:20044264-20044283 Msa0108500:intron 25.0%
!!! TTTTGAAAGATGTTACAAAG+TGG - chr1_3:20044345-20044364 Msa0108500:CDS 25.0%
! TATTTATATAAGGGTCTTCA+AGG - chr1_3:20044375-20044394 Msa0108500:CDS 25.0%
! AGAACTTCTCAATATTGAAA+GGG - chr1_3:20044815-20044834 Msa0108500:intron 25.0%
! TAATTATAAATGTGATCCAG+TGG - chr1_3:20045023-20045042 Msa0108500:CDS 25.0%
!!! CTTTTTAAGTTACACAGAAT+TGG + chr1_3:20045170-20045189 None:intergenic 25.0%
! AAGTTCATAAATGATCATAG+AGG + chr1_3:20045193-20045212 None:intergenic 25.0%
!! ATGAACTTTTTAAACAGGAT+TGG - chr1_3:20045205-20045224 Msa0108500:CDS 25.0%
!! TGAACTTTTTAAACAGGATT+GGG - chr1_3:20045206-20045225 Msa0108500:CDS 25.0%
!! ATTACAGCAACAAAATGTTT+TGG + chr1_3:20045545-20045564 None:intergenic 25.0%
! AATAGGTGAAGTTATATTGA+TGG + chr1_3:20045689-20045708 None:intergenic 25.0%
! TCAATATAACTTCACCTATT+TGG - chr1_3:20045689-20045708 Msa0108500:CDS 25.0%
! ATACGAACATGAATCTTATT+TGG + chr1_3:20045857-20045876 None:intergenic 25.0%
!! GAAAAAACAAATGGAGTATT+AGG - chr1_3:20046060-20046079 Msa0108500:intron 25.0%
! TATTATTTGCTTGAGTAAAC+CGG + chr1_3:20046187-20046206 None:intergenic 25.0%
! GAGTTTAATACCTTAACAAA+AGG + chr1_3:20046942-20046961 None:intergenic 25.0%
! TTTAGAGATGTAACTCAAAA+TGG - chr1_3:20047266-20047285 Msa0108500:intron 25.0%
!! GTATTTTCCTTAATTTATGC+TGG - chr1_3:20047574-20047593 Msa0108500:intron 25.0%
! TTCTTGGATCAAAGAATAAA+AGG + chr1_3:20047654-20047673 None:intergenic 25.0%
! AAGAAATTATTGCATTCCAT+TGG - chr1_3:20047675-20047694 Msa0108500:intron 25.0%
! AATTTCAGATTCAAATTGAC+AGG + chr1_3:20047798-20047817 None:intergenic 25.0%
!! TCAATTTGAATCTGAAATTC+AGG - chr1_3:20047799-20047818 Msa0108500:intron 25.0%
!! TGATGCTGTAATTTTATCAA+TGG - chr1_3:20047957-20047976 Msa0108500:intron 25.0%
!!! TAAAAAATTTGTTGAAACCG+TGG + chr1_3:20048008-20048027 None:intergenic 25.0%
! ATACTCATGCATGAAAATTA+TGG - chr1_3:20048620-20048639 Msa0108500:exon 25.0%
AGTGGTTAAGTATATAAGCA+TGG + chr1_3:20043186-20043205 None:intergenic 30.0%
!! AAGCTAGTTTGGATTTTGAT+GGG + chr1_3:20043302-20043321 None:intergenic 30.0%
!! TTGTGATGTTTTGAACTACA+CGG + chr1_3:20043410-20043429 None:intergenic 30.0%
TTCTTGTTCGTATTCTCAAA+GGG + chr1_3:20043519-20043538 None:intergenic 30.0%
ATTCTTGTTCGTATTCTCAA+AGG + chr1_3:20043520-20043539 None:intergenic 30.0%
ATAGGAACAGCATTCAAATA+AGG + chr1_3:20043735-20043754 None:intergenic 30.0%
TGAATAAAGGTTAAGGACTA+AGG - chr1_3:20044271-20044290 Msa0108500:intron 30.0%
TTAAGGACTAAGGATATGTT+TGG - chr1_3:20044281-20044300 Msa0108500:intron 30.0%
CAGAACTTCTCAATATTGAA+AGG - chr1_3:20044814-20044833 Msa0108500:intron 30.0%
TATTGAAAGGGATGTTGAAT+TGG - chr1_3:20044827-20044846 Msa0108500:intron 30.0%
GATGGCATTTAAATTACAGA+TGG + chr1_3:20044967-20044986 None:intergenic 30.0%
ATTAGAACATATACATCCAC+TGG + chr1_3:20045042-20045061 None:intergenic 30.0%
CCAAATAGTTTAGAGAAAGT+AGG + chr1_3:20045431-20045450 None:intergenic 30.0%
CCTACTTTCTCTAAACTATT+TGG - chr1_3:20045428-20045447 Msa0108500:CDS 30.0%
ACAATAATGATGAACAGAAG+CGG + chr1_3:20045652-20045671 None:intergenic 30.0%
CTTATTTGAACTGCAATACA+TGG + chr1_3:20045782-20045801 None:intergenic 30.0%
!!! ATTTTTCTGAAGCAGCATTA+GGG + chr1_3:20045935-20045954 None:intergenic 30.0%
AGAAGAATAGTTTGGTAGAT+TGG - chr1_3:20046031-20046050 Msa0108500:intron 30.0%
GAAGAATAGTTTGGTAGATT+GGG - chr1_3:20046032-20046051 Msa0108500:intron 30.0%
TGGGAAGAAGAAAAAACAAA+TGG - chr1_3:20046051-20046070 Msa0108500:intron 30.0%
GTTGAAAAGCTTTCAAATGT+TGG - chr1_3:20046276-20046295 Msa0108500:intron 30.0%
GGAATAAATATTGTTCGAGT+TGG - chr1_3:20046297-20046316 Msa0108500:intron 30.0%
!!! TACTGTTTTTGATATACGAG+CGG + chr1_3:20046328-20046347 None:intergenic 30.0%
! AAGATCTAAGACAATGTTTG+AGG - chr1_3:20046433-20046452 Msa0108500:CDS 30.0%
! AGATCTAAGACAATGTTTGA+GGG - chr1_3:20046434-20046453 Msa0108500:CDS 30.0%
!! AAAGCTAAATGCTTTTGACT+TGG - chr1_3:20046605-20046624 Msa0108500:CDS 30.0%
!! TCCTGTGATATTTTCTAGAA+AGG - chr1_3:20046728-20046747 Msa0108500:intron 30.0%
!!! TTTTCTAGAAAGGCATTAGA+AGG - chr1_3:20046738-20046757 Msa0108500:intron 30.0%
AGAGAATGGAGATATCAATT+AGG + chr1_3:20046964-20046983 None:intergenic 30.0%
AAGGCTTCTATTTACATCTT+AGG - chr1_3:20046994-20047013 Msa0108500:CDS 30.0%
! TTTTCATAAGCTATCTACGA+GGG - chr1_3:20047099-20047118 Msa0108500:CDS 30.0%
AAACAAGGACCTATTTGAAT+TGG + chr1_3:20047234-20047253 None:intergenic 30.0%
AAACTCCTCTAGTTAAAACA+AGG + chr1_3:20047249-20047268 None:intergenic 30.0%
! TCCATTGGATATTGTAGTTT+TGG - chr1_3:20047690-20047709 Msa0108500:intron 30.0%
TCCAAAACTACAATATCCAA+TGG + chr1_3:20047694-20047713 None:intergenic 30.0%
GAAAATTCTTATGTCAGCAA+AGG + chr1_3:20047776-20047795 None:intergenic 30.0%
ACTGAACTACAATAGCATTT+GGG + chr1_3:20047831-20047850 None:intergenic 30.0%
!! TCCACAATTGATAGTTTTCA+AGG - chr1_3:20047925-20047944 Msa0108500:intron 30.0%
ACCTTGAAAACTATCAATTG+TGG + chr1_3:20047929-20047948 None:intergenic 30.0%
!! CAATTGATAGTTTTCAAGGT+CGG - chr1_3:20047929-20047948 Msa0108500:intron 30.0%
!! AATTGATAGTTTTCAAGGTC+GGG - chr1_3:20047930-20047949 Msa0108500:intron 30.0%
TAATCCATAGAAGGTAACAT+TGG + chr1_3:20048435-20048454 None:intergenic 30.0%
GTCTCATGTTACAATTATTG+TGG + chr1_3:20048656-20048675 None:intergenic 30.0%
AAGTGTTATGCATGATACTA+TGG - chr1_3:20048720-20048739 Msa0108500:five_prime_UTR 30.0%
AGTGTTATGCATGATACTAT+GGG - chr1_3:20048721-20048740 Msa0108500:five_prime_UTR 30.0%
ATGGGGTAAAAATTGTTTGA+TGG - chr1_3:20048739-20048758 Msa0108500:five_prime_UTR 30.0%
!! GAAGCTAGTTTGGATTTTGA+TGG + chr1_3:20043303-20043322 None:intergenic 35.0%
TGAAGATGATGAAGCTAGTT+TGG + chr1_3:20043313-20043332 None:intergenic 35.0%
CTAGCTTCATCATCTTCATT+TGG - chr1_3:20043315-20043334 Msa0108500:three_prime_UTR 35.0%
CACAAACAGCAATGAAACAA+AGG - chr1_3:20043425-20043444 Msa0108500:exon 35.0%
! TCTCCTTCTTCTTCTTTTTG+TGG + chr1_3:20043460-20043479 None:intergenic 35.0%
CAACATCTTTCCATCCAATA+GGG + chr1_3:20043569-20043588 None:intergenic 35.0%
! TTGGAAAAAGTGTAGTGAGT+TGG - chr1_3:20043586-20043605 Msa0108500:CDS 35.0%
! ACGTGAGAGTATGAAATCTA+TGG - chr1_3:20043611-20043630 Msa0108500:CDS 35.0%
TGCTGAGTTACTTGAAGATT+TGG - chr1_3:20043650-20043669 Msa0108500:CDS 35.0%
TGAATAACAAACGTAAGACC+TGG + chr1_3:20043705-20043724 None:intergenic 35.0%
CTTCAAGATATGCAGAGTAA+AGG - chr1_3:20043843-20043862 Msa0108500:intron 35.0%
AGATATGCAGAGTAAAGGTT+TGG - chr1_3:20043848-20043867 Msa0108500:intron 35.0%
! GTAAAGGTTTGGTTGAAGAT+TGG - chr1_3:20043859-20043878 Msa0108500:intron 35.0%
TCAGTCTTGGAAATTGCTTA+AGG - chr1_3:20043890-20043909 Msa0108500:intron 35.0%
! ATGTCAAAGTGCTCAAAAAC+TGG + chr1_3:20044520-20044539 None:intergenic 35.0%
!! TTTTAGGAATGGACAGAGAA+AGG - chr1_3:20044745-20044764 Msa0108500:intron 35.0%
TTTAGGAATGGACAGAGAAA+GGG - chr1_3:20044746-20044765 Msa0108500:intron 35.0%
!! GAGAAGTTCTGACATGTTTT+GGG + chr1_3:20044805-20044824 None:intergenic 35.0%
!! TGAGAAGTTCTGACATGTTT+TGG + chr1_3:20044806-20044825 None:intergenic 35.0%
TGTTGAATTGGAGTTTACTC+AGG - chr1_3:20044839-20044858 Msa0108500:intron 35.0%
GTAAAAGAGAATACCTGTAG+AGG + chr1_3:20044994-20045013 None:intergenic 35.0%
! ACTTTTTAAACAGGATTGGG+AGG - chr1_3:20045209-20045228 Msa0108500:CDS 35.0%
!! CTGGTGTTATTCAAGATTGA+AGG - chr1_3:20045239-20045258 Msa0108500:CDS 35.0%
CATTGATCGTATTCAAGGAT+TGG - chr1_3:20045463-20045482 Msa0108500:CDS 35.0%
GATAGAAATCAGTACCTCAT+AGG + chr1_3:20045501-20045520 None:intergenic 35.0%
! AGGTTTTCTCTAGTCAAATG+AGG - chr1_3:20045613-20045632 Msa0108500:CDS 35.0%
! GGTTTTCTCTAGTCAAATGA+GGG - chr1_3:20045614-20045633 Msa0108500:CDS 35.0%
!!! CATTTTTCTGAAGCAGCATT+AGG + chr1_3:20045936-20045955 None:intergenic 35.0%
! CTAATGCTGCTTCAGAAAAA+TGG - chr1_3:20045934-20045953 Msa0108500:CDS 35.0%
GTTGCAACAACAGAAATTGA+TGG + chr1_3:20045976-20045995 None:intergenic 35.0%
TCTGTTGTTGCAACTCTATT+CGG - chr1_3:20045982-20046001 Msa0108500:intron 35.0%
ATGGCTTGAGAAGAATAGTT+TGG - chr1_3:20046023-20046042 Msa0108500:intron 35.0%
TCTCTGCTGAGATTTATCAA+AGG + chr1_3:20046094-20046113 None:intergenic 35.0%
CGTTAGGTTTGAATAAGAAG+AGG - chr1_3:20046121-20046140 Msa0108500:intron 35.0%
CATATTATCAACAGCTGCAT+TGG + chr1_3:20046256-20046275 None:intergenic 35.0%
!! CAATGCAGCTGTTGATAATA+TGG - chr1_3:20046254-20046273 Msa0108500:intron 35.0%
!!! ACTGTTTTTGATATACGAGC+GGG + chr1_3:20046327-20046346 None:intergenic 35.0%
AGAGGAAGAAATCTGATCTA+AGG - chr1_3:20046409-20046428 Msa0108500:CDS 35.0%
!! GCATTTAGCTTTCGAATCAT+GGG + chr1_3:20046597-20046616 None:intergenic 35.0%
!! AGCATTTAGCTTTCGAATCA+TGG + chr1_3:20046598-20046617 None:intergenic 35.0%
AATATAGGAATCCAGCAAGA+CGG + chr1_3:20046663-20046682 None:intergenic 35.0%
AAAATATCACAGGAGCTAGT+TGG + chr1_3:20046722-20046741 None:intergenic 35.0%
! GCCTTTCTAGAAAATATCAC+AGG + chr1_3:20046732-20046751 None:intergenic 35.0%
TTGCAATGGCATCATTCATA+CGG + chr1_3:20046842-20046861 None:intergenic 35.0%
AAGATGAGAAAAGACAGTCT+TGG + chr1_3:20046907-20046926 None:intergenic 35.0%
! TGTAGACTCTCCTTTTGTTA+AGG - chr1_3:20046929-20046948 Msa0108500:CDS 35.0%
TTCTATTTACATCTTAGGCC+TGG - chr1_3:20046999-20047018 Msa0108500:CDS 35.0%
CTTAATTAAGCTGCTTATCC+AGG + chr1_3:20047020-20047039 None:intergenic 35.0%
! GTTTTCATAAGCTATCTACG+AGG - chr1_3:20047098-20047117 Msa0108500:CDS 35.0%
!!! TAGGTCCTTGTTTTAACTAG+AGG - chr1_3:20047241-20047260 Msa0108500:intron 35.0%
CCAATTGATAGACTTCCATA+CGG + chr1_3:20047478-20047497 None:intergenic 35.0%
GACTGAACTACAATAGCATT+TGG + chr1_3:20047832-20047851 None:intergenic 35.0%
TTGAACTTGAGCAACATATG+GGG + chr1_3:20047854-20047873 None:intergenic 35.0%
GTTGAACTTGAGCAACATAT+GGG + chr1_3:20047855-20047874 None:intergenic 35.0%
AGTTGAACTTGAGCAACATA+TGG + chr1_3:20047856-20047875 None:intergenic 35.0%
! TTGCTCAAGTTCAACTTTTG+AGG - chr1_3:20047860-20047879 Msa0108500:intron 35.0%
! TGCTCAAGTTCAACTTTTGA+GGG - chr1_3:20047861-20047880 Msa0108500:intron 35.0%
AATTGTGGAAACTTCAGTAC+CGG + chr1_3:20047914-20047933 None:intergenic 35.0%
TGCTCGTGAACTAACATAAT+TGG - chr1_3:20048147-20048166 Msa0108500:CDS 35.0%
ATAGGTACGATCAAACACAT+TGG - chr1_3:20048206-20048225 Msa0108500:CDS 35.0%
TAGGTACGATCAAACACATT+GGG - chr1_3:20048207-20048226 Msa0108500:CDS 35.0%
GAATCCAATGTTACCTTCTA+TGG - chr1_3:20048428-20048447 Msa0108500:CDS 35.0%
TTGCAACACTAATCCATAGA+AGG + chr1_3:20048444-20048463 None:intergenic 35.0%
TGCCTATAAGCAATTGTTTG+AGG - chr1_3:20048495-20048514 Msa0108500:CDS 35.0%
GCCTATAAGCAATTGTTTGA+GGG - chr1_3:20048496-20048515 Msa0108500:CDS 35.0%
CCTATAAGCAATTGTTTGAG+GGG - chr1_3:20048497-20048516 Msa0108500:CDS 35.0%
ATGCATAACACTTGCATCTA+TGG + chr1_3:20048713-20048732 None:intergenic 35.0%
GTGTTATGCATGATACTATG+GGG - chr1_3:20048722-20048741 Msa0108500:five_prime_UTR 35.0%
GAGGATGTTGTTGACAAAGA+AGG + chr1_3:20043137-20043156 None:intergenic 40.0%
! ACATCAACTTGCTTCTTCTG+TGG - chr1_3:20043270-20043289 Msa0108500:three_prime_UTR 40.0%
! CTTCTTCTTTTTGTGGTGCT+TGG + chr1_3:20043453-20043472 None:intergenic 40.0%
GCACCACAAAAAGAAGAAGA+AGG - chr1_3:20043454-20043473 Msa0108500:CDS 40.0%
CTTCTCGTGCATGAGAATAT+AGG - chr1_3:20043540-20043559 Msa0108500:CDS 40.0%
GAGAATATAGGTGACCCTAT+TGG - chr1_3:20043552-20043571 Msa0108500:CDS 40.0%
ATATAGGTGACCCTATTGGA+TGG - chr1_3:20043556-20043575 Msa0108500:CDS 40.0%
CCAACATCTTTCCATCCAAT+AGG + chr1_3:20043570-20043589 None:intergenic 40.0%
CCTATTGGATGGAAAGATGT+TGG - chr1_3:20043567-20043586 Msa0108500:CDS 40.0%
ATGAAACAAAGAATGGGACC+AGG - chr1_3:20043684-20043703 Msa0108500:intron 40.0%
CAAGTAACTTCAAGACCAAG+TGG + chr1_3:20043759-20043778 None:intergenic 40.0%
CTTAAGGAGCTTGCAAATTC+AGG - chr1_3:20043906-20043925 Msa0108500:intron 40.0%
ATTGAAGAGGGCAAACGAAT+AGG + chr1_3:20044457-20044476 None:intergenic 40.0%
GGTTTGAATGCGATTGAAGA+GGG + chr1_3:20044469-20044488 None:intergenic 40.0%
CATCGCGATAAGATTGAGAA+TGG - chr1_3:20044657-20044676 Msa0108500:intron 40.0%
AAAACTCCTTGGACACTCTT+AGG + chr1_3:20044729-20044748 None:intergenic 40.0%
!!! AAGAGTGTCCAAGGAGTTTT+AGG - chr1_3:20044729-20044748 Msa0108500:intron 40.0%
!!! TGTCCAAGGAGTTTTAGGAA+TGG - chr1_3:20044734-20044753 Msa0108500:intron 40.0%
TGTCCATTCCTAAAACTCCT+TGG + chr1_3:20044740-20044759 None:intergenic 40.0%
TGAATTGGAGTTTACTCAGG+AGG - chr1_3:20044842-20044861 Msa0108500:intron 40.0%
!! TCGGAAGCATCATCTTGTTT+AGG + chr1_3:20044882-20044901 None:intergenic 40.0%
! AAGAACTCAATCGGTTTCGA+CGG + chr1_3:20044906-20044925 None:intergenic 40.0%
TGGCTAACCAAGAACTCAAT+CGG + chr1_3:20044915-20044934 None:intergenic 40.0%
!! AATACCTGTAGAGGTACTGA+TGG + chr1_3:20044985-20045004 None:intergenic 40.0%
TCTCACACAAACCATTTCTC+CGG + chr1_3:20045297-20045316 None:intergenic 40.0%
GTTACAACTTCTTGCATGCA+AGG - chr1_3:20045338-20045357 Msa0108500:CDS 40.0%
CAAGGAGTTGTGGAAAATCT+AGG - chr1_3:20045356-20045375 Msa0108500:CDS 40.0%
TAGAGAAAGTAGGATCACCA+TGG + chr1_3:20045421-20045440 None:intergenic 40.0%
GAATAAGAAGAGGCCACTAT+TGG - chr1_3:20046131-20046150 Msa0108500:intron 40.0%
! TTATCAACAGCTGCATTGGT+AGG + chr1_3:20046252-20046271 None:intergenic 40.0%
AACAGTAGCATCAAAGTCCT+TGG - chr1_3:20046341-20046360 Msa0108500:intron 40.0%
ACAGTAGCATCAAAGTCCTT+GGG - chr1_3:20046342-20046361 Msa0108500:intron 40.0%
CGCATTTACAATTTCTCCCA+AGG + chr1_3:20046361-20046380 None:intergenic 40.0%
TTCCCAACTGTTTCAGAAGT+TGG + chr1_3:20046485-20046504 None:intergenic 40.0%
GGGAAAGTCGCTAAAGAAAA+AGG - chr1_3:20046500-20046519 Msa0108500:CDS 40.0%
TGAAGTTCTATCTAGTGCTC+AGG - chr1_3:20046539-20046558 Msa0108500:CDS 40.0%
TAGCTTTCGAATCATGGGAT+CGG + chr1_3:20046592-20046611 None:intergenic 40.0%
TTGGTTGTCATAGATGAAGC+TGG - chr1_3:20046624-20046643 Msa0108500:CDS 40.0%
TTGCTGGATTCCTATATTGC+AGG - chr1_3:20046665-20046684 Msa0108500:intron 40.0%
!! TCTAGAAAGGCATTAGAAGG+TGG - chr1_3:20046741-20046760 Msa0108500:intron 40.0%
! AAGGCATTAGAAGGTGGTTT+AGG - chr1_3:20046747-20046766 Msa0108500:intron 40.0%
! GTATTGTGTCGTTAACCTAG+TGG + chr1_3:20046820-20046839 None:intergenic 40.0%
TGAATGATGCCATTGCAAGT+TGG - chr1_3:20046844-20046863 Msa0108500:intron 40.0%
GAATGATGCCATTGCAAGTT+GGG - chr1_3:20046845-20046864 Msa0108500:intron 40.0%
ATGAGAAAAGACAGTCTTGG+AGG + chr1_3:20046904-20046923 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+CGG + chr1_3:20047187-20047206 None:intergenic 40.0%
CCGTATGGAAGTCTATCAAT+TGG - chr1_3:20047475-20047494 Msa0108500:intron 40.0%
ACAGGCTCGTTGTATAATGA+AGG - chr1_3:20047526-20047545 Msa0108500:intron 40.0%
GAATCCAAACTCTACAACCA+CGG - chr1_3:20047988-20048007 Msa0108500:CDS 40.0%
CCATATTCGACACTTTGGTA+GGG - chr1_3:20048356-20048375 Msa0108500:CDS 40.0%
! CACGTAGAACCAGATAGTTT+TGG - chr1_3:20048384-20048403 Msa0108500:CDS 40.0%
!!! GTAGAACCAGATAGTTTTGG+AGG - chr1_3:20048387-20048406 Msa0108500:CDS 40.0%
!!! AACCAGATAGTTTTGGAGGA+GGG - chr1_3:20048391-20048410 Msa0108500:CDS 40.0%
CCCCTCAAACAATTGCTTAT+AGG + chr1_3:20048500-20048519 None:intergenic 40.0%
!! TTTGGGGGGTATTCATAAAC+TGG - chr1_3:20048537-20048556 Msa0108500:CDS 40.0%
AATGCTGTTCCTATGCCACT+TGG - chr1_3:20043741-20043760 Msa0108500:intron 45.0%
ACTTCAAGACCAAGTGGCAT+AGG + chr1_3:20043753-20043772 None:intergenic 45.0%
ATTGGCGTCAAACTCAGTCT+TGG - chr1_3:20043877-20043896 Msa0108500:intron 45.0%
GGGTTTGAATGCGATTGAAG+AGG + chr1_3:20044470-20044489 None:intergenic 45.0%
TTCAATTGCAGCTCAGCACA+GGG - chr1_3:20044680-20044699 Msa0108500:intron 45.0%
! GGGTCAAAGTGTTACAGCAA+AGG - chr1_3:20044766-20044785 Msa0108500:intron 45.0%
GTCGAAACCGATTGAGTTCT+TGG - chr1_3:20044905-20044924 Msa0108500:intron 45.0%
GTGTCACATAGTTCTTGCTG+AGG + chr1_3:20044945-20044964 None:intergenic 45.0%
AATGCCATCAGTACCTCTAC+AGG - chr1_3:20044978-20044997 Msa0108500:CDS 45.0%
AAAGAGTGGTAGGTGGCAAT+CGG + chr1_3:20045271-20045290 None:intergenic 45.0%
CTCACACAAACCATTTCTCC+GGG + chr1_3:20045296-20045315 None:intergenic 45.0%
TGTGAGAACATGTGACAGCA+AGG - chr1_3:20045310-20045329 Msa0108500:CDS 45.0%
GTGAGAACATGTGACAGCAA+GGG - chr1_3:20045311-20045330 Msa0108500:CDS 45.0%
TTCTTGCATGCAAGGAGTTG+TGG - chr1_3:20045346-20045365 Msa0108500:CDS 45.0%
GTGGAAAATCTAGGTGACGA+TGG - chr1_3:20045365-20045384 Msa0108500:CDS 45.0%
!! ATGGCGTGACTCTAAAGCAA+CGG + chr1_3:20045402-20045421 None:intergenic 45.0%
! GTGCGCATTGATCGTATTCA+AGG - chr1_3:20045458-20045477 Msa0108500:CDS 45.0%
GGCTGATACACTTACCTATG+AGG - chr1_3:20045484-20045503 Msa0108500:CDS 45.0%
ATGATGAACAGAAGCGGCAA+GGG + chr1_3:20045646-20045665 None:intergenic 45.0%
AATGATGAACAGAAGCGGCA+AGG + chr1_3:20045647-20045666 None:intergenic 45.0%
TTGCAACTCTATTCGGCGAA+GGG - chr1_3:20045989-20046008 Msa0108500:intron 45.0%
! AGGCCACTATTGGTTATCCA+AGG - chr1_3:20046141-20046160 Msa0108500:intron 45.0%
GGTCCTTGGATAACCAATAG+TGG + chr1_3:20046147-20046166 None:intergenic 45.0%
GCAAATAATAACATGCGCCG+TGG - chr1_3:20046197-20046216 Msa0108500:intron 45.0%
AACCCTTTCACCTTGTTCCA+CGG + chr1_3:20046217-20046236 None:intergenic 45.0%
AGGGATGATTCATTAGCTGC+AGG - chr1_3:20046453-20046472 Msa0108500:CDS 45.0%
!! ACGCCAACTTCTGAAACAGT+TGG - chr1_3:20046479-20046498 Msa0108500:CDS 45.0%
!! CGCCAACTTCTGAAACAGTT+GGG - chr1_3:20046480-20046499 Msa0108500:CDS 45.0%
TGTCATAGATGAAGCTGGAC+AGG - chr1_3:20046629-20046648 Msa0108500:CDS 45.0%
ATGAAGGGATTCTCACCACT+AGG - chr1_3:20046802-20046821 Msa0108500:intron 45.0%
CCTTCACTTCACACAGAGAA+TGG + chr1_3:20046978-20046997 None:intergenic 45.0%
CCATTCTCTGTGTGAAGTGA+AGG - chr1_3:20046975-20046994 Msa0108500:CDS 45.0%
ATAAGCTATCTACGAGGGCT+TGG - chr1_3:20047104-20047123 Msa0108500:CDS 45.0%
TAAGCTATCTACGAGGGCTT+GGG - chr1_3:20047105-20047124 Msa0108500:CDS 45.0%
TGTAGGCTGCAACAACATCA+AGG + chr1_3:20047413-20047432 None:intergenic 45.0%
TGATGTTGTTGCAGCCTACA+TGG - chr1_3:20047413-20047432 Msa0108500:intron 45.0%
!! TTGCGAAGAGCATCTAGATC+AGG - chr1_3:20047498-20047517 Msa0108500:intron 45.0%
!! CTTTTGAGGGACATGCTTGA+CGG - chr1_3:20047874-20047893 Msa0108500:intron 45.0%
!! TTTTGAGGGACATGCTTGAC+GGG - chr1_3:20047875-20047894 Msa0108500:intron 45.0%
GAAACCGTGGTTGTAGAGTT+TGG + chr1_3:20047995-20048014 None:intergenic 45.0%
TCAAACACATTGGGAGCTGT+AGG - chr1_3:20048216-20048235 Msa0108500:CDS 45.0%
TGATTCTTCTGCTATCGCCA+AGG + chr1_3:20048245-20048264 None:intergenic 45.0%
TATGGCGCATAAGTCTTGCT+AGG + chr1_3:20048341-20048360 None:intergenic 45.0%
ATGCGCCATATTCGACACTT+TGG - chr1_3:20048351-20048370 Msa0108500:CDS 45.0%
GCCATATTCGACACTTTGGT+AGG - chr1_3:20048355-20048374 Msa0108500:CDS 45.0%
!! CCCTACCAAAGTGTCGAATA+TGG + chr1_3:20048359-20048378 None:intergenic 45.0%
!!! GAACCAGATAGTTTTGGAGG+AGG - chr1_3:20048390-20048409 Msa0108500:CDS 45.0%
AACCCTCCTCCAAAACTATC+TGG + chr1_3:20048396-20048415 None:intergenic 45.0%
!!! GATAGTTTTGGAGGAGGGTT+TGG - chr1_3:20048396-20048415 Msa0108500:CDS 45.0%
TAGTGTTGCAAGTGTGACAG+TGG - chr1_3:20048453-20048472 Msa0108500:CDS 45.0%
!! TTCAAAAAATATAATAAAAT+AGG - chr1_3:20048188-20048207 Msa0108500:CDS 5.0%
!!! GATTTATATTTTTTTTTTTT+TGG - chr1_3:20048519-20048538 Msa0108500:CDS 5.0%
!!! TTTATATTTTTTTTTTTTTG+GGG - chr1_3:20048521-20048540 Msa0108500:CDS 5.0%
GTTCAATTGCAGCTCAGCAC+AGG - chr1_3:20044679-20044698 Msa0108500:intron 50.0%
!! ACACAGCCTAAGAGTGTCCA+AGG - chr1_3:20044720-20044739 Msa0108500:intron 50.0%
! CTCAATCGGTTTCGACGGAT+CGG + chr1_3:20044901-20044920 None:intergenic 50.0%
CACATAGTTCTTGCTGAGGC+TGG + chr1_3:20044941-20044960 None:intergenic 50.0%
AGGATTGGGAGGAATGCATC+TGG - chr1_3:20045220-20045239 Msa0108500:CDS 50.0%
CATTTCTCCGGGTGAAAGAG+TGG + chr1_3:20045285-20045304 None:intergenic 50.0%
CACTCTTTCACCCGGAGAAA+TGG - chr1_3:20045283-20045302 Msa0108500:CDS 50.0%
!! GTTGCTTTAGAGTCACGCCA+TGG - chr1_3:20045401-20045420 Msa0108500:CDS 50.0%
GTTGCAACTCTATTCGGCGA+AGG - chr1_3:20045988-20046007 Msa0108500:intron 50.0%
TGCAACTCTATTCGGCGAAG+GGG - chr1_3:20045990-20046009 Msa0108500:intron 50.0%
CAGCAGAGAGCAATTGCGTT+AGG - chr1_3:20046105-20046124 Msa0108500:intron 50.0%
TTGGTTATCCAAGGACCTCC+CGG - chr1_3:20046150-20046169 Msa0108500:intron 50.0%
TAAACCGGTCTTGCCTGTAC+CGG + chr1_3:20046172-20046191 None:intergenic 50.0%
ATAACATGCGCCGTGGAACA+AGG - chr1_3:20046204-20046223 Msa0108500:intron 50.0%
!! GTTTTCGCGAAGAGTGTGAG+AGG - chr1_3:20046391-20046410 Msa0108500:CDS 50.0%
GTTGTGCTTGCCACCAATAC+CGG - chr1_3:20046561-20046580 Msa0108500:CDS 50.0%
AGGCAATTGAACCGTCTTGC+TGG - chr1_3:20046649-20046668 Msa0108500:intron 50.0%
CAGCGTTTCGCCTGCAATAT+AGG + chr1_3:20046678-20046697 None:intergenic 50.0%
AGAGCTGCAACTCTGCATGA+AGG - chr1_3:20046786-20046805 Msa0108500:intron 50.0%
GAGCTGCAACTCTGCATGAA+GGG - chr1_3:20046787-20046806 Msa0108500:intron 50.0%
CTTCGAAGCCCAACTTGCAA+TGG + chr1_3:20046856-20046875 None:intergenic 50.0%
! CATTGCAAGTTGGGCTTCGA+AGG - chr1_3:20046854-20046873 Msa0108500:intron 50.0%
TGGGCTTCGAAGGAGATGTA+TGG - chr1_3:20046864-20046883 Msa0108500:intron 50.0%
GCTTCGAAGGAGATGTATGG+AGG - chr1_3:20046867-20046886 Msa0108500:intron 50.0%
AAGCTATCTACGAGGGCTTG+GGG - chr1_3:20047106-20047125 Msa0108500:CDS 50.0%
! GGGCACTGTGTTATCCATGT+AGG + chr1_3:20047430-20047449 None:intergenic 50.0%
GAGTGTCAAGCAGTAGCAGA+GGG + chr1_3:20047450-20047469 None:intergenic 50.0%
CTTGACACTCGAATGCCGTA+TGG - chr1_3:20047460-20047479 Msa0108500:intron 50.0%
!! GAAGAGCATCTAGATCAGGC+TGG - chr1_3:20047502-20047521 Msa0108500:intron 50.0%
CATCTAGATCAGGCTGGAAC+AGG - chr1_3:20047508-20047527 Msa0108500:intron 50.0%
TTTGAGGGACATGCTTGACG+GGG - chr1_3:20047876-20047895 Msa0108500:intron 50.0%
TTGGGAGCTGTAGGATTCCT+TGG - chr1_3:20048225-20048244 Msa0108500:CDS 50.0%
GTCTTGCTAGGAACGTGTTG+TGG + chr1_3:20048329-20048348 None:intergenic 50.0%
TTTGGAGGAGGGTTTGGACT+TGG - chr1_3:20048402-20048421 Msa0108500:CDS 50.0%
! GTTCTTGCTGAGGCTGGCTA+TGG + chr1_3:20044935-20044954 None:intergenic 55.0%
CCACCTACCACTCTTTCACC+CGG - chr1_3:20045275-20045294 Msa0108500:CDS 55.0%
TCTCCGGGTGAAAGAGTGGT+AGG + chr1_3:20045281-20045300 None:intergenic 55.0%
TTAGGGCTTCACAGTTGCGC+TGG + chr1_3:20045918-20045937 None:intergenic 55.0%
AAACCGGTCTTGCCTGTACC+GGG + chr1_3:20046171-20046190 None:intergenic 55.0%
CGCCGTGGAACAAGGTGAAA+GGG - chr1_3:20046212-20046231 Msa0108500:intron 55.0%
AATCATGGGATCGGCTGCTC+CGG + chr1_3:20046583-20046602 None:intergenic 55.0%
GCGAAACGCTGCATTCTTGC+TGG - chr1_3:20046687-20046706 Msa0108500:intron 55.0%
CGAGTGTCAAGCAGTAGCAG+AGG + chr1_3:20047451-20047470 None:intergenic 55.0%
!! ACTTCAGTACCGGCAGCTTC+AGG + chr1_3:20047904-20047923 None:intergenic 55.0%
ATGCTTGCGCGCTCTTGTGA+TGG + chr1_3:20048274-20048293 None:intergenic 55.0%
CTCAGCACAGGGCAGTTGCA+AGG - chr1_3:20044691-20044710 Msa0108500:intron 60.0%
GAGTGGTAGGTGGCAATCGG+TGG + chr1_3:20045268-20045287 None:intergenic 60.0%
CCGGGTGAAAGAGTGGTAGG+TGG + chr1_3:20045278-20045297 None:intergenic 60.0%
GCGAAGGGGAAGATGCTGCA+TGG - chr1_3:20046004-20046023 Msa0108500:intron 60.0%
ATCCAAGGACCTCCCGGTAC+AGG - chr1_3:20046156-20046175 Msa0108500:intron 60.0%
GCGCCGTGGAACAAGGTGAA+AGG - chr1_3:20046211-20046230 Msa0108500:intron 60.0%
! ATCGGCTGCTCCGGTATTGG+TGG + chr1_3:20046574-20046593 None:intergenic 60.0%
TGCCTGTACCGGGAGGTCCT+TGG + chr1_3:20046161-20046180 None:intergenic 65.0%
CCTCCCGGTACAGGCAAGAC+CGG - chr1_3:20046165-20046184 Msa0108500:intron 65.0%
GGGATCGGCTGCTCCGGTAT+TGG + chr1_3:20046577-20046596 None:intergenic 65.0%
GACGGGGTTCCTGAAGCTGC+CGG - chr1_3:20047892-20047911 Msa0108500:intron 65.0%
CCGGTCTTGCCTGTACCGGG+AGG + chr1_3:20046168-20046187 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 20043105 20048781 20043105 ID=Msa0108500;Name=Msa0108500
chr1_3 mRNA 20043105 20048781 20043105 ID=Msa0108500-mRNA-1;Parent=Msa0108500;Name=Msa0108500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=156|1|1|1|1|1|7|326|954
chr1_3 exon 20043105 20043676 20043105 ID=Msa0108500-mRNA-1:exon:7252;Parent=Msa0108500-mRNA-1
chr1_3 exon 20043908 20044065 20043908 ID=Msa0108500-mRNA-1:exon:7251;Parent=Msa0108500-mRNA-1
chr1_3 exon 20044291 20044459 20044291 ID=Msa0108500-mRNA-1:exon:7250;Parent=Msa0108500-mRNA-1
chr1_3 exon 20044936 20045967 20044936 ID=Msa0108500-mRNA-1:exon:7249;Parent=Msa0108500-mRNA-1
chr1_3 exon 20046381 20046664 20046381 ID=Msa0108500-mRNA-1:exon:7248;Parent=Msa0108500-mRNA-1
chr1_3 exon 20046887 20047195 20046887 ID=Msa0108500-mRNA-1:exon:7247;Parent=Msa0108500-mRNA-1
chr1_3 exon 20047959 20048781 20047959 ID=Msa0108500-mRNA-1:exon:7246;Parent=Msa0108500-mRNA-1
chr1_3 five_prime_UTR 20048626 20048781 20048626 ID=Msa0108500-mRNA-1:five_prime_utr;Parent=Msa0108500-mRNA-1
chr1_3 CDS 20047959 20048625 20047959 ID=Msa0108500-mRNA-1:cds;Parent=Msa0108500-mRNA-1
chr1_3 CDS 20046887 20047195 20046887 ID=Msa0108500-mRNA-1:cds;Parent=Msa0108500-mRNA-1
chr1_3 CDS 20046381 20046664 20046381 ID=Msa0108500-mRNA-1:cds;Parent=Msa0108500-mRNA-1
chr1_3 CDS 20044936 20045967 20044936 ID=Msa0108500-mRNA-1:cds;Parent=Msa0108500-mRNA-1
chr1_3 CDS 20044291 20044459 20044291 ID=Msa0108500-mRNA-1:cds;Parent=Msa0108500-mRNA-1
chr1_3 CDS 20043908 20044065 20043908 ID=Msa0108500-mRNA-1:cds;Parent=Msa0108500-mRNA-1
chr1_3 CDS 20043431 20043676 20043431 ID=Msa0108500-mRNA-1:cds;Parent=Msa0108500-mRNA-1
chr1_3 three_prime_UTR 20043105 20043430 20043105 ID=Msa0108500-mRNA-1:three_prime_utr;Parent=Msa0108500-mRNA-1
Gene Sequence

>Msa0108500

ATGGAAGCAACATCAACTTGCTTCTTCTGTGGTAGAATCCCATCAAAATCCAAACTAGCTTCATCATCTTCATTTGGATCATTTTGTTTATTAACACGCAACAATGTTACTACAATCATGTGCAAAACATCATTGAAAACACACAACCGTGTAGTTCAAAACATCACAAACAGCAATGAAACAAAGGCTCCAAGCACCACAAAAAGAAGAAGAAGGAGAAGAAAAAACGATGCAGCAGCAATAGAAATTCAACTACCCTTTGAGAATACGAACAAGAATCTTCTCGTGCATGAGAATATAGGTGACCCTATTGGATGGAAAGATGTTGGAAAAAGTGTAGTGAGTTGGATACGTGAGAGTATGAAATCTATGGCTTTTGAGATTGCTTCTGCTGAGTTACTTGAAGATTTGGAGTTTTCTGAAATGAAACAAAGAATGGGACCAGGTCTTACGTTTGTTATTCAAGCACAACCTTATTTGAATGCTGTTCCTATGCCACTTGGTCTTGAAGTTACTTGTTTGAAAGCATGTACTCATTATCCTACTCTTTTTGATCATTTTCAAAGAGAGTTGCGTGATGTTCTTCAAGATATGCAGAGTAAAGGTTTGGTTGAAGATTGGCGTCAAACTCAGTCTTGGAAATTGCTTAAGGAGCTTGCAAATTCAGCTCAGCACAGGGCAGTTGCAAGGAATGTAACACAGCCTAAGAGTGTCCAAGGAGTTTTAGGAATGGACAGAGAAAGGGTCAAAGTGTTACAGCAAAGGATCGATGAATTCACCCAAAACATGTCAGAACTTCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAGGAATTAGATGCTGTTCCTAAACAAGATGATGCTTCCGATCCGTCGAAACCGATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTATGTGACACCATCTGTAATTTAAATGCCATCAGTACCTCTACAGGATTGGGAGGAATGCATCTGGTGTTATTCAAGATTGAAGGAAACCACCGATTGCCACCTACCACTCTTTCACCCGGAGAAATGGTTTGTGTGAGAACATGTGACAGCAAGGGTGCAGTTACAACTTCTTGCATGCAAGGAGTTGTGGAAAATCTAGGTGACGATGGCTATAGTATCACCGTTGCTTTAGAGTCACGCCATGGTGATCCTACTTTCTCTAAACTATTTGGAAAGAATGTGCGCATTGATCGTATTCAAGGATTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAGAAAAATGGTTTGCAAAAGAAAAATCCATCAATTTCTGTTGTTGCAACTCTATTCGGCGAAGGGGAAGATGCTGCATGGCTTGAGAAGAATAGTTTGGTAGATTGGGAAGAAGAAAAAACAAATGGAGTATTAGGAAGTGAATCCTTTGATAAATCTCAGCAGAGAGCAATTGCGTTAGGTTTGAATAAGAAGAGGCCACTATTGGTTATCCAAGGACCTCCCGGTACAGGCAAGACCGGTTTACTCAAGCAAATAATAACATGCGCCGTGGAACAAGGTGAAAGGGTTCTTGTCACAGCACCTACCAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGAATAAATATTGTTCGAGTTGGAAATCCCGCTCGTATATCAAAAACAGTAGCATCAAAGTCCTTGGGAGAAATTGTAAATGCGAAGCTTGCAAGTTTTCGCGAAGAGTGTGAGAGGAAGAAATCTGATCTAAGGAAAGATCTAAGACAATGTTTGAGGGATGATTCATTAGCTGCAGGCATACGCCAACTTCTGAAACAGTTGGGAAAGTCGCTAAAGAAAAAGGAAAAGCAGACTATTATTGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACCGGAGCAGCCGATCCCATGATTCGAAAGCTAAATGCTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCGTCTTGCTGGATTCCTATATTGCAGGCGAAACGCTGCATTCTTGCTGGTGATCAATGCCAACTAGCTCCTGTGATATTTTCTAGAAAGGCATTAGAAGGTGGTTTAGGAATATCGCTACTCGAGAGAGCTGCAACTCTGCATGAAGGGATTCTCACCACTAGGTTAACGACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCGAAGGAGATGTATGGAGGATTGTTGAAGTCCTCCAAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAGTGCCCTCTGCTACTGCTTGACACTCGAATGCCGTATGGAAGTCTATCAATTGGTTGCGAAGAGCATCTAGATCAGGCTGGAACAGGCTCGTTGTATAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTATTTTCCTTAATTTATGCTGGTGTTAGCCCAAATGCTATTGTAGTTCAGTCCCCATATGTTGCTCAAGTTCAACTTTTGAGGGACATGCTTGACGGGGTTCCTGAAGCTGCCGGTACTGAAGTTTCCACAATTGATAGTTTTCAAGGTCGGGAAGCTGATGCTGTAATTTTATCAATGGTACGATCAAACACATTGGGAGCTGTAGGATTCCTTGGCGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCGCGCAAGCATTTAGCTGTAGTCTGTGACAGCTCAACTATATGCCACAACACGTTCCTAGCAAGACTTATGCGCCATATTCGACACTTTGGTAGGGTGAAGCACGTAGAACCAGATAGTTTTGGAGGAGGGTTTGGACTTGGCATGAATCCAATGTTACCTTCTATGGATTAG
Protein sequence

>Msa0108500

MEATSTCFFCGRIPSKSKLASSSSFGSFCLLTRNNVTTIMCKTSLKTHNRVVQNITNSNETKAPSTTKRRRRRRKNDAAAIEIQLPFENTNKNLLVHENIGDPIGWKDVGKSVVSWIRESMKSMAFEIASAELLEDLEFSEMKQRMGPGLTFVIQAQPYLNAVPMPLGLEVTCLKACTHYPTLFDHFQRELRDVLQDMQSKGLVEDWRQTQSWKLLKELANSAQHRAVARNVTQPKSVQGVLGMDRERVKVLQQRIDEFTQNMSELLNIERDVELEFTQEELDAVPKQDDASDPSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSKGAVTTSCMQGVVENLGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLQKKNPSISVVATLFGEGEDAAWLEKNSLVDWEEEKTNGVLGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQIITCAVEQGERVLVTAPTNAAVDNMVEKLSNVGINIVRVGNPARISKTVASKSLGEIVNAKLASFREECERKKSDLRKDLRQCLRDDSLAAGIRQLLKQLGKSLKKKEKQTIIEVLSSAQVVLATNTGAADPMIRKLNAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSIGCEEHLDQAGTGSLYNEGEADIVLQHVFSLIYAGVSPNAIVVQSPYVAQVQLLRDMLDGVPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNTFLARLMRHIRHFGRVKHVEPDSFGGGFGLGMNPMLPSMD*