AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373310 MtrunA17_Chr1g0213361 90.523 306 13 1 16 321 28 317 0.0 538
Msa1373310 MtrunA17_Chr1g0181861 63.203 231 84 1 89 318 4 234 1.82e-105 308
Msa1373310 MtrunA17_Chr7g0263221 62.128 235 88 1 87 320 1 235 6.19e-104 304
Msa1373310 MtrunA17_Chr1g0181851 55.405 222 67 1 97 318 8 197 4.06e-82 248
Msa1373310 MtrunA17_Chr1g0181841 58.156 141 33 1 91 205 1 141 3.98e-49 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373310 AT3G55040.1 64.732 224 78 1 97 319 65 288 2.05e-104 307
Msa1373310 AT5G02790.1 64.732 224 78 1 96 318 12 235 2.28e-104 305
Msa1373310 AT5G02780.1 62.780 223 80 3 98 318 16 237 3.31e-98 290
Msa1373310 AT5G02780.3 62.780 223 80 3 98 318 16 237 3.31e-98 290
Msa1373310 AT5G02780.2 63.063 222 79 3 98 318 16 235 1.20e-97 288
Msa1373310 AT1G19570.1 25.123 203 133 7 121 316 20 210 5.82e-12 64.7

Find 107 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGCAAGGCCACAGATTT+TGG 0.183588 tig0019430:+2722 Msa1373310:CDS
TCAGACCTTTAGTTATTAAT+TGG 0.188177 tig0019430:-5312 None:intergenic
GACTGAGAACAAACTATTAT+TGG 0.219954 tig0019430:-2700 None:intergenic
CCTCCACCTTCCTTATTTGA+TGG 0.224092 tig0019430:+3076 Msa1373310:CDS
GAAAGGTCCGCGATCATATT+TGG 0.236113 tig0019430:-4211 None:intergenic
AGGAGTCAAGAGTTCCAAAA+TGG 0.298721 tig0019430:+5051 Msa1373310:three_prime_UTR
GATGCCAAACATTGAATTCA+TGG 0.301206 tig0019430:-5023 None:intergenic
ATCTACAAGACAGACCTTCT+TGG 0.322770 tig0019430:+3495 Msa1373310:CDS
CCTGGTGGTTCCATCAAATA+AGG 0.333486 tig0019430:-3086 None:intergenic
TGAAGTTAGAGGAGAGAGTC+TGG 0.356107 tig0019430:+3688 Msa1373310:CDS
TATATTGACACTCACTTTGA+AGG 0.358114 tig0019430:+3722 Msa1373310:CDS
CTTCCTTGGCCAATTCAGTC+TGG 0.360188 tig0019430:+4233 Msa1373310:CDS
TTAATAACTAAAGGTCTGAT+TGG 0.369479 tig0019430:+5316 Msa1373310:three_prime_UTR
GTGGAGGTGAAGTGGAAGTA+AGG 0.371907 tig0019430:-3060 None:intergenic
GCCCCTATGCCCAGCGTGTA+TGG 0.379106 tig0019430:+3227 Msa1373310:CDS
GCAGACATACCCGGTTGATA+TGG 0.381805 tig0019430:-2874 None:intergenic
AAGAATAACCTTAGTGTTAC+GGG 0.390064 tig0019430:-3254 None:intergenic
GAACACAATAATGAAGTTAG+AGG 0.398648 tig0019430:+3677 Msa1373310:CDS
GTTATGGAAGCAGGGATTGC+AGG 0.399441 tig0019430:+3448 Msa1373310:intron
GATCGCGGACCTTTCTTCCT+TGG 0.399805 tig0019430:+4219 Msa1373310:CDS
TATAGCATATGCTCCTTTCA+TGG 0.403086 tig0019430:+4376 Msa1373310:CDS
TAAGGATAAATAACCTTGTT+GGG 0.403441 tig0019430:-3539 None:intergenic
GTATCTCACACTAGGGTAAA+GGG 0.404706 tig0019430:-3750 None:intergenic
TAGCTTTCAACTAACTCCTT+AGG 0.406704 tig0019430:-4888 None:intergenic
TCAATGTTTGGCATCATAGT+AGG 0.413145 tig0019430:+5031 Msa1373310:three_prime_UTR
AAATCCATGAATTCAATGTT+TGG 0.414052 tig0019430:+5019 Msa1373310:exon
ACAACAGTTGCCATATCAAC+CGG 0.414250 tig0019430:+2864 Msa1373310:CDS
GAAGTGGAAGTAAGGGGTGG+TGG 0.415614 tig0019430:-3052 None:intergenic
GTGGAAATGGATGGCAGATA+TGG 0.418327 tig0019430:-2769 None:intergenic
TAACTTCATATTATAAACTT+TGG 0.431944 tig0019430:-5243 None:intergenic
AGGTCTGTCTTGTAGATCAA+TGG 0.438145 tig0019430:-3489 None:intergenic
AATCCATACACGCTGGGCAT+AGG 0.442924 tig0019430:-3230 None:intergenic
GAAGAATAACCTTAGTGTTA+CGG 0.444757 tig0019430:-3255 None:intergenic
CTAATAATCATTTCAATATG+TGG 0.445003 tig0019430:-5175 None:intergenic
ATCCATACACGCTGGGCATA+GGG 0.447295 tig0019430:-3229 None:intergenic
ATAAGGATAAATAACCTTGT+TGG 0.448370 tig0019430:-3540 None:intergenic
TAAATAGGGTCATGATGATA+AGG 0.452204 tig0019430:+3842 Msa1373310:intron
AAGCTACAAGAAGCGATTCC+TGG 0.453316 tig0019430:+4905 Msa1373310:CDS
GTATACGCACCAGACTGAAT+TGG 0.454158 tig0019430:-4242 None:intergenic
GTCGTACGATTCCTGTTCCC+TGG 0.454500 tig0019430:-5108 None:intergenic
GCTTATTATGAGGTGAATAG+TGG 0.457123 tig0019430:-2788 None:intergenic
GAGGCAGTGGCAAAGTAGTA+AGG 0.458846 tig0019430:+5271 Msa1373310:three_prime_UTR
TATGAGGTGAATAGTGGAAA+TGG 0.459487 tig0019430:-2782 None:intergenic
AAAGGAGATGCAACTGAGGC+TGG 0.461674 tig0019430:+3927 Msa1373310:CDS
ATTATATCCATCCAGGGAAC+AGG 0.465813 tig0019430:+5097 Msa1373310:three_prime_UTR
CAGGGAATAAACAGCATTGA+AGG 0.470738 tig0019430:+4843 Msa1373310:intron
AGTATCTCACACTAGGGTAA+AGG 0.474393 tig0019430:-3751 None:intergenic
CAAATGCATTATATCCATCC+AGG 0.479463 tig0019430:+5090 Msa1373310:three_prime_UTR
GGTCTGTCTTGTAGATCAAT+GGG 0.491503 tig0019430:-3488 None:intergenic
TACGATTCCTGTTCCCTGGA+TGG 0.492581 tig0019430:-5104 None:intergenic
CTGAATTGGCCAAGGAAGAA+AGG 0.493947 tig0019430:-4228 None:intergenic
TAAGGAAGGTGGAGGTGAAG+TGG 0.498397 tig0019430:-3068 None:intergenic
CTGGGCATAGGGGCATTTGT+AGG 0.503100 tig0019430:-3218 None:intergenic
CAGAATTAAACCGCCGTCGA+AGG 0.505283 tig0019430:-2815 None:intergenic
TAACTCCTTAGGATCAGAAC+GGG 0.507962 tig0019430:-4877 None:intergenic
AATAACCCGTTCTGATCCTA+AGG 0.511599 tig0019430:+4872 Msa1373310:CDS
TCATTATTGTGTTCAAGAGA+TGG 0.511615 tig0019430:-3668 None:intergenic
TGGAGGTGAAGTGGAAGTAA+GGG 0.513320 tig0019430:-3059 None:intergenic
TCAATCCATGCTGTCAGTCT+AGG 0.523252 tig0019430:-4455 None:intergenic
CAACTGTTGTCACGCGAACA+TGG 0.523789 tig0019430:-2851 None:intergenic
GATAAATAACCTTGTTGGGT+GGG 0.537520 tig0019430:-3535 None:intergenic
TAATTCCAATTAATAACTAA+AGG 0.540446 tig0019430:+5307 Msa1373310:three_prime_UTR
GGTTGAAATCTTTCCATGAA+AGG 0.546893 tig0019430:-4389 None:intergenic
GGAGTCAAGAGTTCCAAAAT+GGG 0.549019 tig0019430:+5052 Msa1373310:three_prime_UTR
ATAAGCTTCACCTTCGACGG+CGG 0.549183 tig0019430:+2805 Msa1373310:CDS
CGAAGGTGAAGCTTATTATG+AGG 0.551058 tig0019430:-2798 None:intergenic
ACTTTGTCCTTGTACCAAGA+AGG 0.553580 tig0019430:-3509 None:intergenic
ATTATGACATTACAGTGGGC+AGG 0.560090 tig0019430:+4432 Msa1373310:CDS
GGAGGTGAAGTGGAAGTAAG+GGG 0.562918 tig0019430:-3058 None:intergenic
AGACAGACCTTCTTGGTACA+AGG 0.563276 tig0019430:+3502 Msa1373310:CDS
CAGATATGGACATGAAAGGA+AGG 0.564706 tig0019430:-2755 None:intergenic
TGAAGTTACTACTGAGGCAG+TGG 0.570588 tig0019430:+5258 Msa1373310:three_prime_UTR
CCTTATTTGATGGAACCACC+AGG 0.579548 tig0019430:+3086 Msa1373310:CDS
ATGGATTACCCGTAACACTA+AGG 0.580470 tig0019430:+3246 Msa1373310:CDS
GGATAAATAACCTTGTTGGG+TGG 0.582873 tig0019430:-3536 None:intergenic
ACGGGTAATCCATACACGCT+GGG 0.590798 tig0019430:-3236 None:intergenic
GGGAACAGGAATCGTACGAC+AGG 0.593891 tig0019430:+5111 Msa1373310:three_prime_UTR
GTATGTCTGCTTGCCTGCTG+AGG 0.594047 tig0019430:+2887 Msa1373310:CDS
TAGACTGACAGCATGGATTG+AGG 0.598743 tig0019430:+4457 Msa1373310:CDS
CCATCAAATAAGGAAGGTGG+AGG 0.604129 tig0019430:-3076 None:intergenic
AGGCAGTGGCAAAGTAGTAA+GGG 0.604369 tig0019430:+5272 Msa1373310:three_prime_UTR
ATAATAAGCTTCACCTTCGA+CGG 0.605217 tig0019430:+2802 Msa1373310:CDS
CAAAGTCTACCCACCCAACA+AGG 0.610218 tig0019430:+3526 Msa1373310:CDS
AGATATGGACATGAAAGGAA+GGG 0.611763 tig0019430:-2754 None:intergenic
AGCAGGCAAGCAGACATACC+CGG 0.611899 tig0019430:-2883 None:intergenic
TAATAAACATGCAAGTCACA+CGG 0.614141 tig0019430:-5213 None:intergenic
TAATCAGTCTGTCTAGCGAT+CGG 0.615061 tig0019430:-5136 None:intergenic
GTTCCATCAAATAAGGAAGG+TGG 0.631796 tig0019430:-3079 None:intergenic
TACGGGTAATCCATACACGC+TGG 0.632731 tig0019430:-3237 None:intergenic
ATGGCAGATATGGACATGAA+AGG 0.635823 tig0019430:-2759 None:intergenic
AAATGCATTATATCCATCCA+GGG 0.637218 tig0019430:+5091 Msa1373310:three_prime_UTR
ATAATATGAAGTTACTACTG+AGG 0.637899 tig0019430:+5252 Msa1373310:three_prime_UTR
GTGGTTCCATCAAATAAGGA+AGG 0.639894 tig0019430:-3082 None:intergenic
CAACAGTTGCCATATCAACC+GGG 0.643196 tig0019430:+2865 Msa1373310:CDS
GCAGGCCTAGACTGACAGCA+TGG 0.643697 tig0019430:+4450 Msa1373310:CDS
AATAAACATGCAAGTCACAC+GGG 0.644482 tig0019430:-5212 None:intergenic
AGGTGAATAGTGGAAATGGA+TGG 0.645679 tig0019430:-2778 None:intergenic
ATTTGGAGAGAACAGTCTCA+AGG 0.647917 tig0019430:-4194 None:intergenic
TCCATACACGCTGGGCATAG+GGG 0.648367 tig0019430:-3228 None:intergenic
GCACCAGACTGAATTGGCCA+AGG 0.652421 tig0019430:-4236 None:intergenic
GTTTGTTCTCAGTCTCAGCA+AGG 0.652630 tig0019430:+2709 Msa1373310:CDS
GAAGAAGTAACCAAAATCTG+TGG 0.656679 tig0019430:-2732 None:intergenic
CTAACTCCTTAGGATCAGAA+CGG 0.661345 tig0019430:-4878 None:intergenic
GTTCTCTCCAAATATGATCG+CGG 0.676499 tig0019430:+4204 Msa1373310:CDS
TCTCACACTAGGGTAAAGGG+AGG 0.686990 tig0019430:-3747 None:intergenic
GGTGAAGTGGAAGTAAGGGG+TGG 0.709587 tig0019430:-3055 None:intergenic
CTCACACTAGGGTAAAGGGA+GGG 0.728160 tig0019430:-3746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAGTTTATGTTTATATTT+TGG - tig0019430:3814-3833 None:intergenic 10.0%
!! AACTTTACTATTTAATAAAT+AGG + tig0019430:3827-3846 Msa1373310:intron 10.0%
!! ACTTTACTATTTAATAAATA+GGG + tig0019430:3828-3847 Msa1373310:intron 10.0%
!!! AATATTTGATGATATAACTA+TGG + tig0019430:4536-4555 Msa1373310:intron 15.0%
!!! ATATTTGATGATATAACTAT+GGG + tig0019430:4537-4556 Msa1373310:intron 15.0%
!! TAACTTCATATTATAAACTT+TGG - tig0019430:5246-5265 None:intergenic 15.0%
!! TAATTCCAATTAATAACTAA+AGG + tig0019430:5307-5326 Msa1373310:three_prime_UTR 15.0%
!!! TTAATTTGTGTTAGTTTGTT+TGG - tig0019430:3139-3158 None:intergenic 20.0%
!! TAAGGTTATTCTTCATATAT+TGG + tig0019430:3264-3283 Msa1373310:intron 20.0%
!!! TAAAACAAACACCTTTTTAA+TGG + tig0019430:3376-3395 Msa1373310:intron 20.0%
!! AAAATCACAAACCATTAAAA+AGG - tig0019430:3390-3409 None:intergenic 20.0%
!!! AAAAATCACTATTTAGAATG+TGG - tig0019430:3615-3634 None:intergenic 20.0%
!!! CAAAGTTTTCTATTAATTTC+AGG + tig0019430:4349-4368 Msa1373310:intron 20.0%
!!! TTTTTCACATCCATTAAAAA+CGG - tig0019430:4413-4432 None:intergenic 20.0%
!! AAAAATTATGACATTACAGT+GGG + tig0019430:4428-4447 Msa1373310:CDS 20.0%
!! CTACATATAATAAAGGATTA+TGG - tig0019430:4997-5016 None:intergenic 20.0%
!! CATAATCCTTTATTATATGT+AGG + tig0019430:4995-5014 Msa1373310:intron 20.0%
!! CTAATAATCATTTCAATATG+TGG - tig0019430:5178-5197 None:intergenic 20.0%
!!! GTATATACTGTTTTTACAAC+AGG - tig0019430:3342-3361 None:intergenic 25.0%
!! TGATTTTCACACAATTTATC+TGG + tig0019430:3403-3422 Msa1373310:intron 25.0%
! TAAGGATAAATAACCTTGTT+GGG - tig0019430:3542-3561 None:intergenic 25.0%
! ATAAGGATAAATAACCTTGT+TGG - tig0019430:3543-3562 None:intergenic 25.0%
!! AACAAAACATATCATGGTTT+TGG - tig0019430:3575-3594 None:intergenic 25.0%
! ATTTATGTATTTCCAATTCC+AGG + tig0019430:3643-3662 Msa1373310:intron 25.0%
!! ATATAAAGTATCTCACACTA+GGG - tig0019430:3760-3779 None:intergenic 25.0%
!! AATATAAAGTATCTCACACT+AGG - tig0019430:3761-3780 None:intergenic 25.0%
!!! CACTTTTGATCTTTATTTTC+AGG + tig0019430:3787-3806 Msa1373310:intron 25.0%
!!! ACAGTTGTTGCTTATTTTAA+AGG + tig0019430:3909-3928 Msa1373310:CDS 25.0%
!! AGTTTTCTATTAATTTCAGG+TGG + tig0019430:4352-4371 Msa1373310:intron 25.0%
!!! AAGATTTCAACCGTTTTTAA+TGG + tig0019430:4400-4419 Msa1373310:CDS 25.0%
! GAAAAATTATGACATTACAG+TGG + tig0019430:4427-4446 Msa1373310:CDS 25.0%
! TAAAATTGTGCTCTTAATAC+AGG + tig0019430:4824-4843 Msa1373310:intron 25.0%
! AAAATTGTGCTCTTAATACA+GGG + tig0019430:4825-4844 Msa1373310:intron 25.0%
! GATTTGCCTACATATAATAA+AGG - tig0019430:5004-5023 None:intergenic 25.0%
! AAATCCATGAATTCAATGTT+TGG + tig0019430:5019-5038 Msa1373310:exon 25.0%
! ATAATATGAAGTTACTACTG+AGG + tig0019430:5252-5271 Msa1373310:three_prime_UTR 25.0%
! TCAGACCTTTAGTTATTAAT+TGG - tig0019430:5315-5334 None:intergenic 25.0%
! TTAATAACTAAAGGTCTGAT+TGG + tig0019430:5316-5335 Msa1373310:three_prime_UTR 25.0%
GACTGAGAACAAACTATTAT+TGG - tig0019430:2703-2722 None:intergenic 30.0%
AGATAAGAAAGTAAGAAACC+TGG - tig0019430:3107-3126 None:intergenic 30.0%
AAGAATAACCTTAGTGTTAC+GGG - tig0019430:3257-3276 None:intergenic 30.0%
GAAGAATAACCTTAGTGTTA+CGG - tig0019430:3258-3277 None:intergenic 30.0%
CAAGATCTCTATGTATGTTA+TGG + tig0019430:3432-3451 Msa1373310:intron 30.0%
!! AACCATGATATGTTTTGTTG+TGG + tig0019430:3576-3595 Msa1373310:intron 30.0%
TTCCACAACAAAACATATCA+TGG - tig0019430:3581-3600 None:intergenic 30.0%
TCATTATTGTGTTCAAGAGA+TGG - tig0019430:3671-3690 None:intergenic 30.0%
GAACACAATAATGAAGTTAG+AGG + tig0019430:3677-3696 Msa1373310:CDS 30.0%
TATATTGACACTCACTTTGA+AGG + tig0019430:3722-3741 Msa1373310:CDS 30.0%
TAAATAGGGTCATGATGATA+AGG + tig0019430:3842-3861 Msa1373310:intron 30.0%
TACAAGAGAAATGTTGAATC+TGG + tig0019430:3992-4011 Msa1373310:intron 30.0%
AAATGTTGAATCTGGAGAAA+GGG + tig0019430:4000-4019 Msa1373310:intron 30.0%
AACCGTCATTTCATTGTTTA+GGG + tig0019430:4029-4048 Msa1373310:intron 30.0%
TTAATTATTGAGTGAAGCTC+AGG - tig0019430:4807-4826 None:intergenic 30.0%
!! TCTGTCTTATTTATGATACC+AGG - tig0019430:4926-4945 None:intergenic 30.0%
AAATGCATTATATCCATCCA+GGG + tig0019430:5091-5110 Msa1373310:three_prime_UTR 30.0%
! TTTCAATATGTGGCATTTTC+TGG - tig0019430:5168-5187 None:intergenic 30.0%
TAATAAACATGCAAGTCACA+CGG - tig0019430:5216-5235 None:intergenic 30.0%
GAAGAAGTAACCAAAATCTG+TGG - tig0019430:2735-2754 None:intergenic 35.0%
AGATATGGACATGAAAGGAA+GGG - tig0019430:2757-2776 None:intergenic 35.0%
! TATGAGGTGAATAGTGGAAA+TGG - tig0019430:2785-2804 None:intergenic 35.0%
GCTTATTATGAGGTGAATAG+TGG - tig0019430:2791-2810 None:intergenic 35.0%
ATAATAAGCTTCACCTTCGA+CGG + tig0019430:2802-2821 Msa1373310:CDS 35.0%
TAAGAAAGTAAGAAACCTGG+TGG - tig0019430:3104-3123 None:intergenic 35.0%
!!! ACTGTTTTTACAACAGGAGA+GGG - tig0019430:3336-3355 None:intergenic 35.0%
!!! TACTGTTTTTACAACAGGAG+AGG - tig0019430:3337-3356 None:intergenic 35.0%
TCTATGTATGTTATGGAAGC+AGG + tig0019430:3439-3458 Msa1373310:intron 35.0%
CTATGTATGTTATGGAAGCA+GGG + tig0019430:3440-3459 Msa1373310:intron 35.0%
GATAAATAACCTTGTTGGGT+GGG - tig0019430:3538-3557 None:intergenic 35.0%
!! GGTTTTGGCACAAAGTTATA+AGG - tig0019430:3560-3579 None:intergenic 35.0%
!! TTTTAAAGGAGATGCAACTG+AGG + tig0019430:3923-3942 Msa1373310:CDS 35.0%
GAAATGTTGAATCTGGAGAA+AGG + tig0019430:3999-4018 Msa1373310:intron 35.0%
AATGTTGAATCTGGAGAAAG+GGG + tig0019430:4001-4020 Msa1373310:intron 35.0%
GAACCGTCATTTCATTGTTT+AGG + tig0019430:4028-4047 Msa1373310:intron 35.0%
ACCGTCATTTCATTGTTTAG+GGG + tig0019430:4030-4049 Msa1373310:intron 35.0%
TCATTGTTTAGGGGGAAATA+AGG + tig0019430:4039-4058 Msa1373310:intron 35.0%
GTCAATAATGCACAGTATAG+TGG + tig0019430:4285-4304 Msa1373310:intron 35.0%
TATAGCATATGCTCCTTTCA+TGG + tig0019430:4376-4395 Msa1373310:CDS 35.0%
GGTTGAAATCTTTCCATGAA+AGG - tig0019430:4392-4411 None:intergenic 35.0%
!! ATTGCATTGAGGTCGTTTTA+TGG + tig0019430:4573-4592 Msa1373310:intron 35.0%
CAATGAGTTTGCCATAATCA+TGG - tig0019430:4675-4694 None:intergenic 35.0%
TGTGATTTCAAGCATACACT+TGG + tig0019430:4693-4712 Msa1373310:intron 35.0%
CTAACGTAGACCAATAAAGA+TGG + tig0019430:4727-4746 Msa1373310:intron 35.0%
ACCAATAAAGATGGAACCTT+GGG + tig0019430:4736-4755 Msa1373310:intron 35.0%
ACATATTCATGTCATACCCA+AGG - tig0019430:4755-4774 None:intergenic 35.0%
GTATGACATGAATATGTCAC+AGG + tig0019430:4758-4777 Msa1373310:intron 35.0%
TAGCTTTCAACTAACTCCTT+AGG - tig0019430:4891-4910 None:intergenic 35.0%
GATGCCAAACATTGAATTCA+TGG - tig0019430:5026-5045 None:intergenic 35.0%
TCAATGTTTGGCATCATAGT+AGG + tig0019430:5031-5050 Msa1373310:three_prime_UTR 35.0%
! TCTGATTTTCTGACCCATTT+TGG - tig0019430:5068-5087 None:intergenic 35.0%
CAAATGCATTATATCCATCC+AGG + tig0019430:5090-5109 Msa1373310:three_prime_UTR 35.0%
AATAAACATGCAAGTCACAC+GGG - tig0019430:5215-5234 None:intergenic 35.0%
CAGATATGGACATGAAAGGA+AGG - tig0019430:2758-2777 None:intergenic 40.0%
ATGGCAGATATGGACATGAA+AGG - tig0019430:2762-2781 None:intergenic 40.0%
! AGGTGAATAGTGGAAATGGA+TGG - tig0019430:2781-2800 None:intergenic 40.0%
CGAAGGTGAAGCTTATTATG+AGG - tig0019430:2801-2820 None:intergenic 40.0%
ACAACAGTTGCCATATCAAC+CGG + tig0019430:2864-2883 Msa1373310:CDS 40.0%
GTTCCATCAAATAAGGAAGG+TGG - tig0019430:3082-3101 None:intergenic 40.0%
GTGGTTCCATCAAATAAGGA+AGG - tig0019430:3085-3104 None:intergenic 40.0%
TGTTACTGTGACTGAACTCA+AGG + tig0019430:3185-3204 Msa1373310:intron 40.0%
! ATGGATTACCCGTAACACTA+AGG + tig0019430:3246-3265 Msa1373310:CDS 40.0%
GGTCTGTCTTGTAGATCAAT+GGG - tig0019430:3491-3510 None:intergenic 40.0%
AGGTCTGTCTTGTAGATCAA+TGG - tig0019430:3492-3511 None:intergenic 40.0%
ATCTACAAGACAGACCTTCT+TGG + tig0019430:3495-3514 Msa1373310:CDS 40.0%
ACTTTGTCCTTGTACCAAGA+AGG - tig0019430:3512-3531 None:intergenic 40.0%
GGATAAATAACCTTGTTGGG+TGG - tig0019430:3539-3558 None:intergenic 40.0%
GTATCTCACACTAGGGTAAA+GGG - tig0019430:3753-3772 None:intergenic 40.0%
AGTATCTCACACTAGGGTAA+AGG - tig0019430:3754-3773 None:intergenic 40.0%
ATGTTGAATCTGGAGAAAGG+GGG + tig0019430:4002-4021 Msa1373310:intron 40.0%
CCCCCTAAACAATGAAATGA+CGG - tig0019430:4034-4053 None:intergenic 40.0%
CCGTCATTTCATTGTTTAGG+GGG + tig0019430:4031-4050 Msa1373310:intron 40.0%
TCACGTTACACTGCTTCATT+AGG + tig0019430:4156-4175 Msa1373310:intron 40.0%
ATTTGGAGAGAACAGTCTCA+AGG - tig0019430:4197-4216 None:intergenic 40.0%
GTTCTCTCCAAATATGATCG+CGG + tig0019430:4204-4223 Msa1373310:CDS 40.0%
ATTATGACATTACAGTGGGC+AGG + tig0019430:4432-4451 Msa1373310:CDS 40.0%
ATCTACCTGTCATTGCATTG+AGG + tig0019430:4562-4581 Msa1373310:intron 40.0%
! GGTAACATATTTTGCCACAG+CGG + tig0019430:4594-4613 Msa1373310:intron 40.0%
! GTAACATATTTTGCCACAGC+GGG + tig0019430:4595-4614 Msa1373310:intron 40.0%
ATCCAAACGTCACTAACTTC+TGG - tig0019430:4622-4641 None:intergenic 40.0%
AGTTAGTGACGTTTGGATTC+AGG + tig0019430:4624-4643 Msa1373310:intron 40.0%
GTTAGTGACGTTTGGATTCA+GGG + tig0019430:4625-4644 Msa1373310:intron 40.0%
! ATCATGGTGGCATCATGTTT+TGG - tig0019430:4659-4678 None:intergenic 40.0%
ACATGATGCCACCATGATTA+TGG + tig0019430:4661-4680 Msa1373310:intron 40.0%
TGAGTTTGCCATAATCATGG+TGG - tig0019430:4672-4691 None:intergenic 40.0%
CAAGCATACACTTGGACATT+AGG + tig0019430:4701-4720 Msa1373310:intron 40.0%
GACCAATAAAGATGGAACCT+TGG + tig0019430:4735-4754 Msa1373310:intron 40.0%
ACCCAAGGTTCCATCTTTAT+TGG - tig0019430:4740-4759 None:intergenic 40.0%
! CAGGGAATAAACAGCATTGA+AGG + tig0019430:4843-4862 Msa1373310:intron 40.0%
AATAACCCGTTCTGATCCTA+AGG + tig0019430:4872-4891 Msa1373310:CDS 40.0%
TAACTCCTTAGGATCAGAAC+GGG - tig0019430:4880-4899 None:intergenic 40.0%
CTAACTCCTTAGGATCAGAA+CGG - tig0019430:4881-4900 None:intergenic 40.0%
AGGAGTCAAGAGTTCCAAAA+TGG + tig0019430:5051-5070 Msa1373310:three_prime_UTR 40.0%
GGAGTCAAGAGTTCCAAAAT+GGG + tig0019430:5052-5071 Msa1373310:three_prime_UTR 40.0%
ATTATATCCATCCAGGGAAC+AGG + tig0019430:5097-5116 Msa1373310:three_prime_UTR 40.0%
TAATCAGTCTGTCTAGCGAT+CGG - tig0019430:5139-5158 None:intergenic 40.0%
GTTTGTTCTCAGTCTCAGCA+AGG + tig0019430:2709-2728 Msa1373310:CDS 45.0%
GTGGAAATGGATGGCAGATA+TGG - tig0019430:2772-2791 None:intergenic 45.0%
CAACAGTTGCCATATCAACC+GGG + tig0019430:2865-2884 Msa1373310:CDS 45.0%
TGGAGGTGAAGTGGAAGTAA+GGG - tig0019430:3062-3081 None:intergenic 45.0%
CCATCAAATAAGGAAGGTGG+AGG - tig0019430:3079-3098 None:intergenic 45.0%
! CCTCCACCTTCCTTATTTGA+TGG + tig0019430:3076-3095 Msa1373310:CDS 45.0%
CCTGGTGGTTCCATCAAATA+AGG - tig0019430:3089-3108 None:intergenic 45.0%
! CCTTATTTGATGGAACCACC+AGG + tig0019430:3086-3105 Msa1373310:CDS 45.0%
AGACAGACCTTCTTGGTACA+AGG + tig0019430:3502-3521 Msa1373310:CDS 45.0%
CAAGAGATGGAACCTGGAAT+TGG - tig0019430:3658-3677 None:intergenic 45.0%
TGTGTTCAAGAGATGGAACC+TGG - tig0019430:3664-3683 None:intergenic 45.0%
TGAAGTTAGAGGAGAGAGTC+TGG + tig0019430:3688-3707 Msa1373310:CDS 45.0%
GAAAGGTCCGCGATCATATT+TGG - tig0019430:4214-4233 None:intergenic 45.0%
CTGAATTGGCCAAGGAAGAA+AGG - tig0019430:4231-4250 None:intergenic 45.0%
GTATACGCACCAGACTGAAT+TGG - tig0019430:4245-4264 None:intergenic 45.0%
TCAATCCATGCTGTCAGTCT+AGG - tig0019430:4458-4477 None:intergenic 45.0%
! TAGACTGACAGCATGGATTG+AGG + tig0019430:4457-4476 Msa1373310:CDS 45.0%
AACGACCTCAATGCAATGAC+AGG - tig0019430:4570-4589 None:intergenic 45.0%
GTCCAGAAGTTAGTGACGTT+TGG + tig0019430:4617-4636 Msa1373310:intron 45.0%
AAGCTACAAGAAGCGATTCC+TGG + tig0019430:4905-4924 Msa1373310:CDS 45.0%
TGAAGTTACTACTGAGGCAG+TGG + tig0019430:5258-5277 Msa1373310:three_prime_UTR 45.0%
AGGCAGTGGCAAAGTAGTAA+GGG + tig0019430:5272-5291 Msa1373310:three_prime_UTR 45.0%
! CTCAGCAAGGCCACAGATTT+TGG + tig0019430:2722-2741 Msa1373310:CDS 50.0%
ATAAGCTTCACCTTCGACGG+CGG + tig0019430:2805-2824 Msa1373310:CDS 50.0%
CAGAATTAAACCGCCGTCGA+AGG - tig0019430:2818-2837 None:intergenic 50.0%
CAACTGTTGTCACGCGAACA+TGG - tig0019430:2854-2873 None:intergenic 50.0%
! GCAGACATACCCGGTTGATA+TGG - tig0019430:2877-2896 None:intergenic 50.0%
GGAGGTGAAGTGGAAGTAAG+GGG - tig0019430:3061-3080 None:intergenic 50.0%
GTGGAGGTGAAGTGGAAGTA+AGG - tig0019430:3063-3082 None:intergenic 50.0%
TAAGGAAGGTGGAGGTGAAG+TGG - tig0019430:3071-3090 None:intergenic 50.0%
ATCCATACACGCTGGGCATA+GGG - tig0019430:3232-3251 None:intergenic 50.0%
AATCCATACACGCTGGGCAT+AGG - tig0019430:3233-3252 None:intergenic 50.0%
ACGGGTAATCCATACACGCT+GGG - tig0019430:3239-3258 None:intergenic 50.0%
TACGGGTAATCCATACACGC+TGG - tig0019430:3240-3259 None:intergenic 50.0%
GTTATGGAAGCAGGGATTGC+AGG + tig0019430:3448-3467 Msa1373310:intron 50.0%
CAAAGTCTACCCACCCAACA+AGG + tig0019430:3526-3545 Msa1373310:CDS 50.0%
CTCACACTAGGGTAAAGGGA+GGG - tig0019430:3749-3768 None:intergenic 50.0%
TCTCACACTAGGGTAAAGGG+AGG - tig0019430:3750-3769 None:intergenic 50.0%
AAAGGAGATGCAACTGAGGC+TGG + tig0019430:3927-3946 Msa1373310:CDS 50.0%
CTTCCTTGGCCAATTCAGTC+TGG + tig0019430:4233-4252 Msa1373310:CDS 50.0%
TACGATTCCTGTTCCCTGGA+TGG - tig0019430:5107-5126 None:intergenic 50.0%
GAGGCAGTGGCAAAGTAGTA+AGG + tig0019430:5271-5290 Msa1373310:three_prime_UTR 50.0%
AGCAGGCAAGCAGACATACC+CGG - tig0019430:2886-2905 None:intergenic 55.0%
GTATGTCTGCTTGCCTGCTG+AGG + tig0019430:2887-2906 Msa1373310:CDS 55.0%
GAAGTGGAAGTAAGGGGTGG+TGG - tig0019430:3055-3074 None:intergenic 55.0%
GGTGAAGTGGAAGTAAGGGG+TGG - tig0019430:3058-3077 None:intergenic 55.0%
!! CTGGGCATAGGGGCATTTGT+AGG - tig0019430:3221-3240 None:intergenic 55.0%
TCCATACACGCTGGGCATAG+GGG - tig0019430:3231-3250 None:intergenic 55.0%
GATCGCGGACCTTTCTTCCT+TGG + tig0019430:4219-4238 Msa1373310:CDS 55.0%
GCACCAGACTGAATTGGCCA+AGG - tig0019430:4239-4258 None:intergenic 55.0%
ACTAACTTCTGGACCCGCTG+TGG - tig0019430:4611-4630 None:intergenic 55.0%
GTCGTACGATTCCTGTTCCC+TGG - tig0019430:5111-5130 None:intergenic 55.0%
GGGAACAGGAATCGTACGAC+AGG + tig0019430:5111-5130 Msa1373310:three_prime_UTR 55.0%
GAGCTCAGCTTAGCCTCAGC+AGG - tig0019430:2903-2922 None:intergenic 60.0%
GCAGGCCTAGACTGACAGCA+TGG + tig0019430:4450-4469 Msa1373310:CDS 60.0%
GCCCCTATGCCCAGCGTGTA+TGG + tig0019430:3227-3246 Msa1373310:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019430 gene 2666 5390 2666 ID=Msa1373310;Name=Msa1373310
tig0019430 mRNA 2666 5390 2666 ID=Msa1373310-mRNA-1;Parent=Msa1373310;Name=Msa1373310-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.88|0.9|1|1|1|10|362|321
tig0019430 exon 2666 2931 2666 ID=Msa1373310-mRNA-1:exon:3299;Parent=Msa1373310-mRNA-1
tig0019430 exon 3033 3107 3033 ID=Msa1373310-mRNA-1:exon:3300;Parent=Msa1373310-mRNA-1
tig0019430 exon 3207 3267 3207 ID=Msa1373310-mRNA-1:exon:3301;Parent=Msa1373310-mRNA-1
tig0019430 exon 3461 3547 3461 ID=Msa1373310-mRNA-1:exon:3302;Parent=Msa1373310-mRNA-1
tig0019430 exon 3665 3763 3665 ID=Msa1373310-mRNA-1:exon:3303;Parent=Msa1373310-mRNA-1
tig0019430 exon 3849 3948 3849 ID=Msa1373310-mRNA-1:exon:3304;Parent=Msa1373310-mRNA-1
tig0019430 exon 4178 4254 4178 ID=Msa1373310-mRNA-1:exon:3305;Parent=Msa1373310-mRNA-1
tig0019430 exon 4371 4478 4371 ID=Msa1373310-mRNA-1:exon:3306;Parent=Msa1373310-mRNA-1
tig0019430 exon 4846 4926 4846 ID=Msa1373310-mRNA-1:exon:3307;Parent=Msa1373310-mRNA-1
tig0019430 exon 5017 5390 5017 ID=Msa1373310-mRNA-1:exon:3308;Parent=Msa1373310-mRNA-1
tig0019430 CDS 2666 2931 2666 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 3033 3107 3033 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 3207 3267 3207 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 3461 3547 3461 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 3665 3763 3665 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 3849 3948 3849 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 4178 4254 4178 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 4371 4478 4371 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 4846 4926 4846 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 CDS 5017 5028 5017 ID=Msa1373310-mRNA-1:cds;Parent=Msa1373310-mRNA-1
tig0019430 three_prime_UTR 5029 5390 5029 ID=Msa1373310-mRNA-1:three_prime_utr;Parent=Msa1373310-mRNA-1
Gene Sequence

>Msa1373310

ATGGCTATATCATCATCATCATCATCATTATTAACCAATAATAGTTTGTTCTCAGTCTCAGCAAGGCCACAGATTTTGGTTACTTCTTCCCTTCCTTTCATGTCCATATCTGCCATCCATTTCCACTATTCACCTCATAATAAGCTTCACCTTCGACGGCGGTTTAATTCTGTTACAAAATCGTGCCATGTTCGCGTGACAACAGTTGCCATATCAACCGGGTATGTCTGCTTGCCTGCTGAGGCTAAGCTGAGCTCAGTAGTAATAAGTGTGCAAGAAGTTCTTCCACCACCCCTTACTTCCACTTCACCTCCACCTTCCTTATTTGATGGAACCACCAGGTTGTATATCTCCTACAAATGCCCCTATGCCCAGCGTGTATGGATTACCCGTAACACTAAGGGATTGCAGGACAAGATACAGTTAGTTCCCATTGATCTACAAGACAGACCTTCTTGGTACAAGGACAAAGTCTACCCACCCAACAAGGTTCCATCTCTTGAACACAATAATGAAGTTAGAGGAGAGAGTCTGGATCTGATTAAATATATTGACACTCACTTTGAAGGACCCTCCCTTTACCCTAGTGGTCATGATGATAAGGAGTTTGCTGAAGAGTTGCTATCTTACACAGATACATTTTACAAGACAGTTGTTGCTTATTTTAAAGGAGATGCAACTGAGGCTGGCACTGCATTTGATTACCTTGAGACTGTTCTCTCCAAATATGATCGCGGACCTTTCTTCCTTGGCCAATTCAGTCTGGTGGATATAGCATATGCTCCTTTCATGGAAAGATTTCAACCGTTTTTAATGGATGTGAAAAATTATGACATTACAGTGGGCAGGCCTAGACTGACAGCATGGATTGAGGGAATAAACAGCATTGAAGGCTACAAAATAACCCGTTCTGATCCTAAGGAGTTAGTTGAAAGCTACAAGAAGCGATTCCTGGCAAATCCATGA

Protein sequence

>Msa1373310

MAISSSSSSLLTNNSLFSVSARPQILVTSSLPFMSISAIHFHYSPHNKLHLRRRFNSVTKSCHVRVTTVAISTGYVCLPAEAKLSSVVISVQEVLPPPLTSTSPPPSLFDGTTRLYISYKCPYAQRVWITRNTKGLQDKIQLVPIDLQDRPSWYKDKVYPPNKVPSLEHNNEVRGESLDLIKYIDTHFEGPSLYPSGHDDKEFAEELLSYTDTFYKTVVAYFKGDATEAGTAFDYLETVLSKYDRGPFFLGQFSLVDIAYAPFMERFQPFLMDVKNYDITVGRPRLTAWIEGINSIEGYKITRSDPKELVESYKKRFLANP*