AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194750 MtrunA17_Chr2g0285791 96.000 325 9 1 1 321 1 325 0.0 637
Msa0194750 MtrunA17_Chr6g0453121 48.085 235 110 4 82 314 126 350 5.00e-60 198
Msa0194750 MtrunA17_Chr6g0450671 42.321 293 141 9 27 314 54 323 4.03e-59 196
Msa0194750 MtrunA17_Chr7g0272621 36.517 178 103 5 129 305 147 315 3.36e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194750 AT4G18370.1 73.305 236 59 2 86 321 92 323 1.46e-124 360
Msa0194750 AT4G18370.2 71.751 177 46 2 86 262 92 264 6.43e-87 262
Msa0194750 AT4G18370.3 70.270 148 40 2 86 233 92 235 6.30e-70 218
Msa0194750 AT5G39830.1 46.835 237 108 5 82 313 116 339 2.79e-59 197
Msa0194750 AT3G27925.1 46.444 239 106 6 77 314 113 330 1.78e-57 192
Msa0194750 AT3G27925.2 46.444 239 106 6 77 314 113 330 1.78e-57 192
Msa0194750 AT5G39830.2 43.038 237 103 5 82 313 116 325 2.68e-51 175
Msa0194750 AT5G27660.2 37.288 177 99 6 129 303 149 315 2.30e-19 88.6
Msa0194750 AT5G27660.1 37.288 177 99 6 129 303 144 310 2.75e-19 88.2

Find 92 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTTGTGCATTTGTTTC+AGG 0.129362 2_1:-11107267 Msa0194750:intron
AGTCAATTCAATGTCTTTAA+TGG 0.134990 2_1:+11106209 None:intergenic
TCCAGGGAAGGGAAAATAAT+TGG 0.154649 2_1:-11105350 Msa0194750:CDS
GAAATAAAGCCTGTTGTTAT+TGG 0.182109 2_1:-11103367 Msa0194750:CDS
GGCTTCATTTGGGATAAATT+TGG 0.201587 2_1:-11106111 Msa0194750:CDS
CAAGTCTTGTAGTTGCTTCT+TGG 0.214119 2_1:-11107370 Msa0194750:CDS
TTTCAGATTCTAATTGCTTA+TGG 0.218025 2_1:+11107551 None:intergenic
CTTTGATAGCCCCTCCATTT+GGG 0.261671 2_1:+11102976 None:intergenic
TTTAGCTACAACATGGTAAT+TGG 0.266241 2_1:+11105531 None:intergenic
GACTTCATTAGAAGAGGTTT+TGG 0.274618 2_1:+11106179 None:intergenic
TTTCAAAACCTATTAGTATA+AGG 0.279957 2_1:+11101632 None:intergenic
CCTTTGATAGCCCCTCCATT+TGG 0.294286 2_1:+11102975 None:intergenic
ATGCAGGTGGTCAGTGGTTT+AGG 0.298156 2_1:-11103014 Msa0194750:intron
GTACCATCCCTTATTGTATA+TGG 0.304932 2_1:-11101659 Msa0194750:CDS
TTTGCCATTGGGAATCCTTA+TGG 0.306916 2_1:-11103310 Msa0194750:CDS
ATGGAACACCTTATACTAAT+AGG 0.308611 2_1:-11101640 Msa0194750:CDS
GAGAGGGAAAGAGGTTCATT+TGG 0.325824 2_1:+11107477 None:intergenic
GCACTGGTTCAGGCTTCATT+TGG 0.338673 2_1:-11106122 Msa0194750:CDS
AAAGTGGAAGGCACTGGTTC+AGG 0.378478 2_1:-11106132 Msa0194750:CDS
CACTGGTTCAGGCTTCATTT+GGG 0.391449 2_1:-11106121 Msa0194750:CDS
CCAGGGAAGGGAAAATAATT+GGG 0.392744 2_1:-11105349 Msa0194750:CDS
GACAGAGTTGCTTTGCCATT+GGG 0.398813 2_1:-11103321 Msa0194750:CDS
GACTCTCATGGCCATGTTGT+TGG 0.403469 2_1:-11102008 Msa0194750:CDS
TATTTGCAGGTTGATGTTGA+TGG 0.405637 2_1:-11103394 Msa0194750:intron
AAGGTGTTCCATATACAATA+AGG 0.408680 2_1:+11101651 None:intergenic
TAGTGGTTTACAACGTTGTA+AGG 0.411713 2_1:-11105494 Msa0194750:intron
CGGATGTTAACAGGAAATTC+AGG 0.411871 2_1:-11102044 Msa0194750:intron
TATGAGAATACTCTCACAAC+AGG 0.425005 2_1:-11103286 Msa0194750:CDS
AGAGAAAACATTGTGATGAT+TGG 0.430574 2_1:+11107500 None:intergenic
AAGACTTGAACTGAAGACTA+TGG 0.430823 2_1:+11107385 None:intergenic
TTAGATTCACCAATAACAAC+AGG 0.438438 2_1:+11103358 None:intergenic
ATAGAAGAATATGAGAGAAA+AGG 0.444303 2_1:-11107594 Msa0194750:five_prime_UTR
GTTGTGTTGAATTGAAATTA+AGG 0.445017 2_1:+11107339 None:intergenic
GGTGGGAAGGGTCTTTGTTG+AGG 0.458920 2_1:+11107436 None:intergenic
TCAGGTACCGGAGCTTCATC+AGG 0.470733 2_1:-11101722 Msa0194750:intron
AGGTGTTCCATATACAATAA+GGG 0.471453 2_1:+11101652 None:intergenic
ATTACCTTTCCTTGTGAAGG+TGG 0.475479 2_1:+11101974 None:intergenic
CCTGGAAAAGTTATTCCCAT+TGG 0.481148 2_1:+11105367 None:intergenic
CGCGAGATACCTTCCCCAAA+TGG 0.481655 2_1:-11102990 Msa0194750:CDS
TGAGGATGAAGATGCAAAAG+TGG 0.487615 2_1:-11106148 Msa0194750:CDS
TATATTACCTTTCCTTGTGA+AGG 0.491019 2_1:+11101971 None:intergenic
AGTAGCTGTAACAGTGGTGG+TGG 0.505438 2_1:+11107418 None:intergenic
TGTAACAGTGGTGGTGGGAA+GGG 0.505477 2_1:+11107424 None:intergenic
ATGAGTAGTTAGCGTTGGAG+AGG 0.508532 2_1:+11107460 None:intergenic
TTAGCGTTGGAGAGGGAAAG+AGG 0.508546 2_1:+11107468 None:intergenic
CTGTAACAGTGGTGGTGGGA+AGG 0.510652 2_1:+11107423 None:intergenic
GGACAGAGTTGCTTTGCCAT+TGG 0.512294 2_1:-11103322 Msa0194750:CDS
TATTCCCATTGGCATCAACT+AGG 0.514434 2_1:+11105378 None:intergenic
TAGCATGACTTCATTAGAAG+AGG 0.522603 2_1:+11106173 None:intergenic
AGAGTATTCTCATATCCATA+AGG 0.524491 2_1:+11103295 None:intergenic
GAGGAATGAGTAGTTAGCGT+TGG 0.524538 2_1:+11107455 None:intergenic
CTGAAAGAGAAAGTGTTGTA+TGG 0.530063 2_1:-11107534 Msa0194750:exon
GTTAACTCCTGATGAAGCTC+CGG 0.541628 2_1:+11101715 None:intergenic
ACTGATGCAGCTATTAATGC+AGG 0.543845 2_1:-11102942 Msa0194750:intron
ACTTCTAATTACAGAGTCGA+TGG 0.545161 2_1:+11101682 None:intergenic
AGCTGTTGTGAAAGTGAAAG+TGG 0.549859 2_1:+11107317 None:intergenic
TGAGTAGTTAGCGTTGGAGA+GGG 0.552406 2_1:+11107461 None:intergenic
AGAATATGAGAGAAAAGGAA+TGG 0.562377 2_1:-11107589 Msa0194750:five_prime_UTR
GGACCATTGATTGACTCTCA+TGG 0.566441 2_1:-11102020 Msa0194750:CDS
TTTGATAGCCCCTCCATTTG+GGG 0.566803 2_1:+11102977 None:intergenic
TGGCCATGAGAGTCAATCAA+TGG 0.568108 2_1:+11102017 None:intergenic
ATATGATCTAGCTGTTCTGA+AGG 0.569824 2_1:-11105315 Msa0194750:intron
AGAACAGCTAGATCATATGA+TGG 0.573622 2_1:+11105320 None:intergenic
CCAAATGGAGGGGCTATCAA+AGG 0.574726 2_1:-11102975 Msa0194750:CDS
AGATACCTTCCCCAAATGGA+GGG 0.575115 2_1:-11102986 Msa0194750:CDS
ATAGCCCCTCCATTTGGGGA+AGG 0.577157 2_1:+11102981 None:intergenic
GATGCAAAAGTGGAAGGCAC+TGG 0.579458 2_1:-11106138 Msa0194750:CDS
GAATCTAAGAATTTACATGT+TGG 0.582777 2_1:-11103343 Msa0194750:CDS
ACGTTGTAAACCACTAGTAT+CGG 0.589338 2_1:+11105501 None:intergenic
GAGATACCTTCCCCAAATGG+AGG 0.591441 2_1:-11102987 Msa0194750:CDS
TAAATTATGCAGGTGGTCAG+TGG 0.593859 2_1:-11103020 Msa0194750:intron
ACAGCCACCTTCACAAGGAA+AGG 0.596510 2_1:-11101978 Msa0194750:intron
GATGAAGATGCAAAAGTGGA+AGG 0.620131 2_1:-11106144 Msa0194750:CDS
CTGTGTTTACTCCAACAACA+TGG 0.626621 2_1:+11101997 None:intergenic
CTTCTAATTACAGAGTCGAT+GGG 0.626746 2_1:+11101683 None:intergenic
TAATGAAGTCATGCTAGATG+AGG 0.628611 2_1:-11106166 Msa0194750:CDS
CTTAGTAGCTGTAACAGTGG+TGG 0.631185 2_1:+11107415 None:intergenic
TCTTTAATGGAAACAACAGA+TGG 0.633125 2_1:+11106222 None:intergenic
GTTCCATATACAATAAGGGA+TGG 0.636651 2_1:+11101656 None:intergenic
TAAACACAGCCACCTTCACA+AGG 0.639628 2_1:-11101983 Msa0194750:CDS
ATGAGAATACTCTCACAACA+GGG 0.643517 2_1:-11103285 Msa0194750:CDS
GATACCTTCCCCAAATGGAG+GGG 0.644193 2_1:-11102985 Msa0194750:CDS
GTAGCTGTAACAGTGGTGGT+GGG 0.650253 2_1:+11107419 None:intergenic
TCGCTTAGTAGCTGTAACAG+TGG 0.652682 2_1:+11107412 None:intergenic
TAGCTAGTTTAGCTACAACA+TGG 0.693427 2_1:+11105524 None:intergenic
ATATCCATAAGGATTCCCAA+TGG 0.696972 2_1:+11103306 None:intergenic
AAACTAGCTACCGATACTAG+TGG 0.701856 2_1:-11105511 Msa0194750:CDS
AAACCTGAAACAAATGCACA+AGG 0.703790 2_1:+11107264 None:intergenic
ATGTTAACAGGAAATTCAGG+CGG 0.717135 2_1:-11102041 Msa0194750:intron
TGAGAATACTCTCACAACAG+GGG 0.741501 2_1:-11103284 Msa0194750:intron
CCTGAAACAAATGCACAAGG+TGG 0.756569 2_1:+11107267 None:intergenic
CATTTGGGGAAGGTATCTCG+CGG 0.758593 2_1:+11102991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGTATTTTTTTTTTAAATAA+TGG + chr2_1:11103119-11103138 None:intergenic 10.0%
!! ATTATAAAAAATAGTGAAAG+GGG + chr2_1:11101890-11101909 None:intergenic 15.0%
!! CATTATAAAAAATAGTGAAA+GGG + chr2_1:11101891-11101910 None:intergenic 15.0%
!! ACATTATAAAAAATAGTGAA+AGG + chr2_1:11101892-11101911 None:intergenic 15.0%
!!! TATTTTTTATAATGTAGTGT+TGG - chr2_1:11101897-11101916 Msa0194750:intron 15.0%
!!! ATTTTTTATAATGTAGTGTT+GGG - chr2_1:11101898-11101917 Msa0194750:intron 15.0%
!!! TTTAATCAAATTTTGCAATT+GGG - chr2_1:11101970-11101989 Msa0194750:intron 15.0%
!!! TTCTTGAACTAATTTTTTTT+GGG - chr2_1:11102028-11102047 Msa0194750:CDS 15.0%
!!! TATTATATTTCTATAGTTCA+TGG - chr2_1:11102284-11102303 Msa0194750:intron 15.0%
!! AAAAATAATAATCATATGTC+AGG + chr2_1:11105458-11105477 None:intergenic 15.0%
!! CAATAGTTAGTTATAAAAAT+TGG + chr2_1:11105525-11105544 None:intergenic 15.0%
!!! TTTTCTTAATATGTGTAAAA+TGG + chr2_1:11106325-11106344 None:intergenic 15.0%
!! ATTAGTAGATAAGTATAAAA+TGG - chr2_1:11106545-11106564 Msa0194750:intron 15.0%
!!! TTTTTTTTCAAATGTGATAT+AGG - chr2_1:11106887-11106906 Msa0194750:intron 15.0%
!!! TTTTTTTCAAATGTGATATA+GGG - chr2_1:11106888-11106907 Msa0194750:intron 15.0%
!!! GTTTAATCAAATTTTGCAAT+TGG - chr2_1:11101969-11101988 Msa0194750:intron 20.0%
!!! GTTCTTGAACTAATTTTTTT+TGG - chr2_1:11102027-11102046 Msa0194750:CDS 20.0%
!! ACAAAAACAAACCATTAATT+TGG + chr2_1:11102342-11102361 None:intergenic 20.0%
!!! ATTTTCATTCTTTTGATATG+TGG - chr2_1:11102380-11102399 Msa0194750:intron 20.0%
!! TTAAATGTAATCATATGTGT+CGG - chr2_1:11102558-11102577 Msa0194750:intron 20.0%
!!! ATCTAAAATAAGAAGTTTGA+TGG + chr2_1:11103663-11103682 None:intergenic 20.0%
!!! ATCAAACTTCTTATTTTAGA+TGG - chr2_1:11103662-11103681 Msa0194750:intron 20.0%
!! ATTAATGAATAGAAAAGAAG+AGG + chr2_1:11103836-11103855 None:intergenic 20.0%
!! AAAATGACTTTCACATATTT+GGG + chr2_1:11103957-11103976 None:intergenic 20.0%
!!! TCCTTTTTTTTGTTTTGTTT+TGG - chr2_1:11104543-11104562 Msa0194750:intron 20.0%
!! ACCAAAACAAAACAAAAAAA+AGG + chr2_1:11104547-11104566 None:intergenic 20.0%
!! TTAGATATGATATCATAATC+CGG - chr2_1:11105077-11105096 Msa0194750:intron 20.0%
!! AAATTGGATGAAATAATTAG+TGG - chr2_1:11105373-11105392 Msa0194750:CDS 20.0%
!! TGTAACTAACTATTGATATA+TGG - chr2_1:11105592-11105611 Msa0194750:intron 20.0%
!!! TTCCTTAATTTTAATCCATA+GGG + chr2_1:11106261-11106280 None:intergenic 20.0%
!!! TTTCCTTAATTTTAATCCAT+AGG + chr2_1:11106262-11106281 None:intergenic 20.0%
!! GATTAAAAAAAGAAAGAGAA+TGG - chr2_1:11106348-11106367 Msa0194750:intron 20.0%
!! CGATAATGAAAATACATAAA+TGG + chr2_1:11106400-11106419 None:intergenic 20.0%
!!! TTTTCTCAATTAAGTTTAGA+AGG - chr2_1:11106597-11106616 Msa0194750:intron 20.0%
!! TTTCTCAATTAAGTTTAGAA+GGG - chr2_1:11106598-11106617 Msa0194750:intron 20.0%
!! GAACTCTCTAATTAATATTA+TGG + chr2_1:11106805-11106824 None:intergenic 20.0%
!! TTTCAAAACCTATTAGTATA+AGG + chr2_1:11107481-11107500 None:intergenic 20.0%
!!! TTTCAGTTTTAGAATAAACA+TGG + chr2_1:11107592-11107611 None:intergenic 20.0%
! ATAGAAGAATATGAGAGAAA+AGG - chr2_1:11101516-11101535 Msa0194750:three_prime_UTR 25.0%
! TTTCAGATTCTAATTGCTTA+TGG + chr2_1:11101562-11101581 None:intergenic 25.0%
! GTTGTGTTGAATTGAAATTA+AGG + chr2_1:11101774-11101793 None:intergenic 25.0%
! TAGTTCATGAACTAAATTGA+CGG - chr2_1:11102237-11102256 Msa0194750:intron 25.0%
! ATTAAGCATTTGATTATCAC+AGG - chr2_1:11102857-11102876 Msa0194750:intron 25.0%
! AGTCAATTCAATGTCTTTAA+TGG + chr2_1:11102904-11102923 None:intergenic 25.0%
!!! TTGTTTTTCATCTTACTATG+TGG + chr2_1:11103025-11103044 None:intergenic 25.0%
! ACAAGCAGAATCAAATTAAA+GGG + chr2_1:11103075-11103094 None:intergenic 25.0%
! AACAAGCAGAATCAAATTAA+AGG + chr2_1:11103076-11103095 None:intergenic 25.0%
! ATAAGATAATTGCTCTACTA+TGG + chr2_1:11103310-11103329 None:intergenic 25.0%
! GAAAAACTGTTTGAAAACAT+TGG - chr2_1:11103393-11103412 Msa0194750:intron 25.0%
! ATAATTTGACAAACTATCTC+AGG - chr2_1:11103448-11103467 Msa0194750:intron 25.0%
! AAAGACTATATCTATGTCAT+GGG + chr2_1:11103487-11103506 None:intergenic 25.0%
! TAAAGACTATATCTATGTCA+TGG + chr2_1:11103488-11103507 None:intergenic 25.0%
! ACCTTGAAAGTTTGAAAAAA+TGG + chr2_1:11103524-11103543 None:intergenic 25.0%
!!! GTCATTTGTTTTTTTTCTTC+TGG - chr2_1:11103545-11103564 Msa0194750:intron 25.0%
! GGAAGAAACATATGTAATAT+TGG - chr2_1:11103683-11103702 Msa0194750:intron 25.0%
! AACAGAGAAATCAAAATGTT+CGG + chr2_1:11103865-11103884 None:intergenic 25.0%
! GAAAATGACTTTCACATATT+TGG + chr2_1:11103958-11103977 None:intergenic 25.0%
! TGATATTATGCAACAAACTA+TGG - chr2_1:11104033-11104052 Msa0194750:intron 25.0%
! TACAAAGCTGATAAAAAAAG+TGG + chr2_1:11104206-11104225 None:intergenic 25.0%
!! TTCTTTTGGCATTTGATAAA+TGG - chr2_1:11104239-11104258 Msa0194750:intron 25.0%
! CTCAAAATAATTCAAGAATC+AGG + chr2_1:11104265-11104284 None:intergenic 25.0%
!!! CTGATTCTTGAATTATTTTG+AGG - chr2_1:11104263-11104282 Msa0194750:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG - chr2_1:11104358-11104377 Msa0194750:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG - chr2_1:11104386-11104405 Msa0194750:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG - chr2_1:11104358-11104377 Msa0194750:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG - chr2_1:11104386-11104405 Msa0194750:intron 25.0%
! TTTATATTCAAGTCGTGAAT+CGG + chr2_1:11104495-11104514 None:intergenic 25.0%
! TAGAACCTTACACTAATATT+GGG + chr2_1:11104595-11104614 None:intergenic 25.0%
! TTAGAACCTTACACTAATAT+TGG + chr2_1:11104596-11104615 None:intergenic 25.0%
! ATAAAGAAACCAACTTACTA+GGG + chr2_1:11104657-11104676 None:intergenic 25.0%
! GTCTTATCATATTAAGTGTT+TGG - chr2_1:11104749-11104768 Msa0194750:intron 25.0%
! TACATCTTATTCTTCATTCT+TGG + chr2_1:11105011-11105030 None:intergenic 25.0%
! ATAAGATGAAGAATACAGAA+TGG + chr2_1:11105108-11105127 None:intergenic 25.0%
! GACTTATTTGTAAAGAAGTT+AGG - chr2_1:11105253-11105272 Msa0194750:intron 25.0%
! ATAATTAGTGGCATGATAAT+AGG - chr2_1:11105385-11105404 Msa0194750:CDS 25.0%
! TAATTAGTGGCATGATAATA+GGG - chr2_1:11105386-11105405 Msa0194750:CDS 25.0%
!!! CAAAGTATTTTTACAGCTAA+GGG + chr2_1:11105634-11105653 None:intergenic 25.0%
!!! ACAAAGTATTTTTACAGCTA+AGG + chr2_1:11105635-11105654 None:intergenic 25.0%
! AAAGTAAGATTCACAAAAGT+AGG + chr2_1:11105674-11105693 None:intergenic 25.0%
! GAATCTAAGAATTTACATGT+TGG - chr2_1:11105767-11105786 Msa0194750:intron 25.0%
! ATCCTTCATCTATAACTATT+TGG + chr2_1:11105937-11105956 None:intergenic 25.0%
! ACATAAAGAACCACAAATAA+GGG + chr2_1:11106203-11106222 None:intergenic 25.0%
! AACATAAAGAACCACAAATA+AGG + chr2_1:11106204-11106223 None:intergenic 25.0%
!!! TATTGTTTTTCACTTTGCAT+TGG + chr2_1:11106423-11106442 None:intergenic 25.0%
! AATGCAAAGTGAAAAACAAT+AGG - chr2_1:11106422-11106441 Msa0194750:intron 25.0%
! AAAGTGAAAAACAATAGGTT+AGG - chr2_1:11106427-11106446 Msa0194750:intron 25.0%
! AAGTGAAAAACAATAGGTTA+GGG - chr2_1:11106428-11106447 Msa0194750:intron 25.0%
! ATAAGCTCATATGACAAAAA+AGG + chr2_1:11106732-11106751 None:intergenic 25.0%
! TCTGCTATAAACTAGAAAAT+TGG - chr2_1:11106764-11106783 Msa0194750:intron 25.0%
!! ATTAATATTATGGCTCTGTT+TGG + chr2_1:11106795-11106814 None:intergenic 25.0%
! TATTAATTAGAGAGTTCGAT+TGG - chr2_1:11106808-11106827 Msa0194750:intron 25.0%
!! TACTGAAATCTAAAACAAGA+TGG + chr2_1:11106986-11107005 None:intergenic 25.0%
! TACACGATAAAATACAATGA+AGG + chr2_1:11107170-11107189 None:intergenic 25.0%
! ATGAAGTATAAATATGGGAA+AGG + chr2_1:11107211-11107230 None:intergenic 25.0%
! CGCAAATGAAGTATAAATAT+GGG + chr2_1:11107216-11107235 None:intergenic 25.0%
! ACGCAAATGAAGTATAAATA+TGG + chr2_1:11107217-11107236 None:intergenic 25.0%
!!! ATTTCTAGACTTCAATTTTG+TGG + chr2_1:11107304-11107323 None:intergenic 25.0%
!! TTTTGCTTTCAATCTAATTC+AGG - chr2_1:11107370-11107389 Msa0194750:CDS 25.0%
!!! CATGTAATCAACTTTTTTTG+TGG - chr2_1:11107504-11107523 Msa0194750:CDS 25.0%
AGAATATGAGAGAAAAGGAA+TGG - chr2_1:11101521-11101540 Msa0194750:three_prime_UTR 30.0%
AGAGAAAACATTGTGATGAT+TGG + chr2_1:11101613-11101632 None:intergenic 30.0%
! GGGTCATGAACTTTAAAAAT+AGG - chr2_1:11101990-11102009 Msa0194750:CDS 30.0%
ATTGGTACCCAAAATTAGTT+GGG + chr2_1:11102057-11102076 None:intergenic 30.0%
!! TGACGGATTGAAAATAGTTT+AGG - chr2_1:11102254-11102273 Msa0194750:intron 30.0%
!! GACGGATTGAAAATAGTTTA+GGG - chr2_1:11102255-11102274 Msa0194750:intron 30.0%
TAGGTTAGAGACCAAATTAA+TGG - chr2_1:11102328-11102347 Msa0194750:intron 30.0%
!! AAGTGTTACTTCAACACATT+TGG + chr2_1:11102406-11102425 None:intergenic 30.0%
! TGAAGTAACACTTTTGATGT+TGG - chr2_1:11102413-11102432 Msa0194750:intron 30.0%
! GAAGTAACACTTTTGATGTT+GGG - chr2_1:11102414-11102433 Msa0194750:intron 30.0%
! AAGTAACACTTTTGATGTTG+GGG - chr2_1:11102415-11102434 Msa0194750:intron 30.0%
AATGAAGCACAGATACTATT+CGG + chr2_1:11102629-11102648 None:intergenic 30.0%
! AAGTTTAAAACCAATGCATG+TGG - chr2_1:11102729-11102748 Msa0194750:intron 30.0%
TCTTTAATGGAAACAACAGA+TGG + chr2_1:11102891-11102910 None:intergenic 30.0%
! ACTTCATTAGAAGAGGTTTT+GGG + chr2_1:11102933-11102952 None:intergenic 30.0%
GATGAAAAACAAATCAGAAG+AGG - chr2_1:11103033-11103052 Msa0194750:intron 30.0%
CAAGCAGAATCAAATTAAAG+GGG + chr2_1:11103074-11103093 None:intergenic 30.0%
! AAATACGACGCTTTAGATTA+AGG - chr2_1:11103132-11103151 Msa0194750:intron 30.0%
TGACACTAATATCTAGATAC+TGG + chr2_1:11103252-11103271 None:intergenic 30.0%
TTGCTTTCAAGATGTTGTAA+TGG - chr2_1:11103341-11103360 Msa0194750:CDS 30.0%
ACTGTGAATACCTAAATGTA+AGG - chr2_1:11103416-11103435 Msa0194750:intron 30.0%
!!! GCCATTTTTTCAAACTTTCA+AGG - chr2_1:11103520-11103539 Msa0194750:intron 30.0%
TTTAGCTACAACATGGTAAT+TGG + chr2_1:11103582-11103601 None:intergenic 30.0%
GAGTTTATACTTCTATCTGT+AGG - chr2_1:11103705-11103724 Msa0194750:intron 30.0%
TGAATAGAAAAGAAGAGGAT+TGG + chr2_1:11103831-11103850 None:intergenic 30.0%
ACAGAGAAATCAAAATGTTC+GGG + chr2_1:11103864-11103883 None:intergenic 30.0%
ATAGATACACGCTAACATTT+GGG + chr2_1:11104114-11104133 None:intergenic 30.0%
AATAGATACACGCTAACATT+TGG + chr2_1:11104115-11104134 None:intergenic 30.0%
GTGATTCGTTACAATGAATT+AGG + chr2_1:11104161-11104180 None:intergenic 30.0%
!! ATAACCAACCACTTTTCTTT+TGG - chr2_1:11104225-11104244 Msa0194750:intron 30.0%
ATCAAATGCCAAAAGAAAAG+TGG + chr2_1:11104236-11104255 None:intergenic 30.0%
ACACTAATATTGGGAATCAA+AGG + chr2_1:11104586-11104605 None:intergenic 30.0%
TGATTCCCAATATTAGTGTA+AGG - chr2_1:11104587-11104606 Msa0194750:intron 30.0%
CATAAAGAAACCAACTTACT+AGG + chr2_1:11104658-11104677 None:intergenic 30.0%
!! CTAGTAAGTTGGTTTCTTTA+TGG - chr2_1:11104656-11104675 Msa0194750:intron 30.0%
!!! ACAGACAGTTTTTTCTTACT+GGG + chr2_1:11104731-11104750 None:intergenic 30.0%
! TCTAAGACCTCAGATAATTT+AGG - chr2_1:11104806-11104825 Msa0194750:intron 30.0%
TTCTCCTCGTCATATTAAAA+GGG + chr2_1:11104931-11104950 None:intergenic 30.0%
TCTTATTCTTCATTCTTGGA+CGG + chr2_1:11105007-11105026 None:intergenic 30.0%
TGAAGAATAAGATGTAACAC+CGG - chr2_1:11105015-11105034 Msa0194750:intron 30.0%
ATCAGCTAATATGGAATATC+CGG + chr2_1:11105037-11105056 None:intergenic 30.0%
TTGTAATACATGTTGTCAGT+TGG + chr2_1:11105228-11105247 None:intergenic 30.0%
!! ATGGTCAACAATTCTGAAAT+TGG - chr2_1:11105357-11105376 Msa0194750:CDS 30.0%
ATGACATTTGATCTATTTGC+AGG - chr2_1:11105703-11105722 Msa0194750:intron 30.0%
GAAATAAAGCCTGTTGTTAT+TGG - chr2_1:11105743-11105762 Msa0194750:intron 30.0%
TTAGATTCACCAATAACAAC+AGG + chr2_1:11105755-11105774 None:intergenic 30.0%
! AGAGTATTCTCATATCCATA+AGG + chr2_1:11105818-11105837 None:intergenic 30.0%
!! TTGTTAAGTTGAATCCAACA+TGG - chr2_1:11105858-11105877 Msa0194750:intron 30.0%
CTAATGAAAGTTTACCATGT+TGG + chr2_1:11105875-11105894 None:intergenic 30.0%
TGCCAAATAGTTATAGATGA+AGG - chr2_1:11105932-11105951 Msa0194750:intron 30.0%
TCAGATAAAACAAAATCGCT+TGG - chr2_1:11106024-11106043 Msa0194750:intron 30.0%
TTATGCGATGTAAATTATGC+AGG - chr2_1:11106080-11106099 Msa0194750:intron 30.0%
! TGCCCTATGGATTAAAATTA+AGG - chr2_1:11106256-11106275 Msa0194750:intron 30.0%
AGTGAAAAACAATAGGTTAG+GGG - chr2_1:11106429-11106448 Msa0194750:intron 30.0%
!! GAAAGCGTTGTTAAAATTAG+TGG - chr2_1:11106518-11106537 Msa0194750:intron 30.0%
! ATGACAAAAAAGGACTTGTT+TGG + chr2_1:11106722-11106741 None:intergenic 30.0%
ATGTGATATAGGGAGTAATT+TGG - chr2_1:11106898-11106917 Msa0194750:intron 30.0%
AAACTGTACAATGTAACCAA+CGG - chr2_1:11106923-11106942 Msa0194750:intron 30.0%
TATATTACCTTTCCTTGTGA+AGG + chr2_1:11107142-11107161 None:intergenic 30.0%
TGAAAGCAAAACATTCTTGA+AGG + chr2_1:11107361-11107380 None:intergenic 30.0%
TTTCAATCTAATTCAGGTAC+CGG - chr2_1:11107376-11107395 Msa0194750:CDS 30.0%
AGGTGTTCCATATACAATAA+GGG + chr2_1:11107461-11107480 None:intergenic 30.0%
! AAGGTGTTCCATATACAATA+AGG + chr2_1:11107462-11107481 None:intergenic 30.0%
ATGGAACACCTTATACTAAT+AGG - chr2_1:11107470-11107489 Msa0194750:CDS 30.0%
!! CTGAAAGAGAAAGTGTTGTA+TGG - chr2_1:11101576-11101595 Msa0194750:three_prime_UTR 35.0%
AAGACTTGAACTGAAGACTA+TGG + chr2_1:11101728-11101747 None:intergenic 35.0%
AAACCTGAAACAAATGCACA+AGG + chr2_1:11101849-11101868 None:intergenic 35.0%
! TTGGGAAACCCAACTAATTT+TGG - chr2_1:11102046-11102065 Msa0194750:intron 35.0%
! TGGGAAACCCAACTAATTTT+GGG - chr2_1:11102047-11102066 Msa0194750:intron 35.0%
GATTGGTACCCAAAATTAGT+TGG + chr2_1:11102058-11102077 None:intergenic 35.0%
TGTTTGTTCTCGCTTCAATT+AGG + chr2_1:11102098-11102117 None:intergenic 35.0%
TGACCCAATACAAGAATTGT+TGG - chr2_1:11102130-11102149 Msa0194750:intron 35.0%
AGTTCATGAACTAAACCCTA+GGG + chr2_1:11102230-11102249 None:intergenic 35.0%
TAGTTCATGAACTAAACCCT+AGG + chr2_1:11102231-11102250 None:intergenic 35.0%
CTATAGTTCATGGACCAAAT+TGG - chr2_1:11102294-11102313 Msa0194750:intron 35.0%
CTATCATTGTCTCTCCAATT+TGG + chr2_1:11102311-11102330 None:intergenic 35.0%
CAAATTGGAGAGACAATGAT+AGG - chr2_1:11102309-11102328 Msa0194750:intron 35.0%
! AGTAACACTTTTGATGTTGG+GGG - chr2_1:11102416-11102435 Msa0194750:intron 35.0%
ATAGGTCACAACTACAATTG+TGG + chr2_1:11102469-11102488 None:intergenic 35.0%
TAGTTGTGACCTATGAAACA+CGG - chr2_1:11102475-11102494 Msa0194750:intron 35.0%
AATGTAATCATATGTGTCGG+TGG - chr2_1:11102561-11102580 Msa0194750:intron 35.0%
! CACTTTAAAGGACTTTGCAA+CGG + chr2_1:11102662-11102681 None:intergenic 35.0%
AATCACCATTTCGTATGTGT+TGG + chr2_1:11102819-11102838 None:intergenic 35.0%
! CTTCATTAGAAGAGGTTTTG+GGG + chr2_1:11102932-11102951 None:intergenic 35.0%
! GACTTCATTAGAAGAGGTTT+TGG + chr2_1:11102934-11102953 None:intergenic 35.0%
TAGCATGACTTCATTAGAAG+AGG + chr2_1:11102940-11102959 None:intergenic 35.0%
TAATGAAGTCATGCTAGATG+AGG - chr2_1:11102944-11102963 Msa0194750:CDS 35.0%
! GGCTTCATTTGGGATAAATT+TGG - chr2_1:11102999-11103018 Msa0194750:CDS 35.0%
GTGCTTTCAATTCAATGAAG+TGG - chr2_1:11103363-11103382 Msa0194750:CDS 35.0%
!!! TTTTTTTTCTTCTGGTGCAC+AGG - chr2_1:11103553-11103572 Msa0194750:intron 35.0%
! TAGCTAGTTTAGCTACAACA+TGG + chr2_1:11103589-11103608 None:intergenic 35.0%
ACGTTGTAAACCACTAGTAT+CGG + chr2_1:11103612-11103631 None:intergenic 35.0%
TAGTGGTTTACAACGTTGTA+AGG - chr2_1:11103616-11103635 Msa0194750:intron 35.0%
TGATGGAATTATCAGCACAA+GGG + chr2_1:11103646-11103665 None:intergenic 35.0%
TTGATGGAATTATCAGCACA+AGG + chr2_1:11103647-11103666 None:intergenic 35.0%
!! TTTTCCTAGTTGATGCCAAT+GGG - chr2_1:11103728-11103747 Msa0194750:intron 35.0%
! CAATGGGAATAACTTTTCCA+GGG - chr2_1:11103744-11103763 Msa0194750:intron 35.0%
AGAACAGCTAGATCATATGA+TGG + chr2_1:11103793-11103812 None:intergenic 35.0%
ATATGATCTAGCTGTTCTGA+AGG - chr2_1:11103795-11103814 Msa0194750:intron 35.0%
GATTTCTCTGTTATTCCTGT+TGG - chr2_1:11103873-11103892 Msa0194750:intron 35.0%
AGCATATAGAAGAATCCAAC+AGG + chr2_1:11103891-11103910 None:intergenic 35.0%
!! TATGGTAATGGATTGGAAAG+TGG + chr2_1:11103929-11103948 None:intergenic 35.0%
ATTTGGGCATGTTATGGTAA+TGG + chr2_1:11103941-11103960 None:intergenic 35.0%
TCACATATTTGGGCATGTTA+TGG + chr2_1:11103947-11103966 None:intergenic 35.0%
AATGCCAAAAGAAAAGTGGT+TGG + chr2_1:11104232-11104251 None:intergenic 35.0%
! GGAACTAAACATTTGTTGCA+AGG + chr2_1:11104526-11104545 None:intergenic 35.0%
TCTTTATGGCACAAAAATGC+AGG - chr2_1:11104670-11104689 Msa0194750:intron 35.0%
AAATGCAGGCATTTGCTTTA+TGG - chr2_1:11104684-11104703 Msa0194750:intron 35.0%
! TTTTCTTACTGGGACAGAAT+AGG + chr2_1:11104721-11104740 None:intergenic 35.0%
!!! GACAGACAGTTTTTTCTTAC+TGG + chr2_1:11104732-11104751 None:intergenic 35.0%
TTGTGTAGTATTAAGGCAGA+TGG + chr2_1:11104775-11104794 None:intergenic 35.0%
ATCTGCCTTAATACTACACA+AGG - chr2_1:11104774-11104793 Msa0194750:intron 35.0%
TTGGTCCTTGTGTAGTATTA+AGG + chr2_1:11104782-11104801 None:intergenic 35.0%
! ATCTGAGGTCTTAGAATACT+TGG + chr2_1:11104801-11104820 None:intergenic 35.0%
AAGACCTCAGATAATTTAGG+AGG - chr2_1:11104809-11104828 Msa0194750:intron 35.0%
GTTTCCTCCTAAATTATCTG+AGG + chr2_1:11104816-11104835 None:intergenic 35.0%
!! GTTTAGAGTTCCTCTTTTCA+AGG - chr2_1:11104886-11104905 Msa0194750:intron 35.0%
CTTCTCCTCGTCATATTAAA+AGG + chr2_1:11104932-11104951 None:intergenic 35.0%
TTTAATATGACGAGGAGAAG+AGG - chr2_1:11104932-11104951 Msa0194750:intron 35.0%
TTAATATGACGAGGAGAAGA+GGG - chr2_1:11104933-11104952 Msa0194750:intron 35.0%
TACAGTTGCATCAGCTAATA+TGG + chr2_1:11105046-11105065 None:intergenic 35.0%
ACCATTACTTACAATACTCC+TGG - chr2_1:11105149-11105168 Msa0194750:intron 35.0%
!! ACCAGGAGTATTGTAAGTAA+TGG + chr2_1:11105153-11105172 None:intergenic 35.0%
AATACATGTTGTCAGTTGGA+AGG + chr2_1:11105224-11105243 None:intergenic 35.0%
AGCAAGTTCACAACATTGAA+AGG + chr2_1:11105297-11105316 None:intergenic 35.0%
CCATTTATGCTTACTGTGAA+AGG + chr2_1:11105321-11105340 None:intergenic 35.0%
CCTTTCACAGTAAGCATAAA+TGG - chr2_1:11105318-11105337 Msa0194750:CDS 35.0%
CACAGTAAGCATAAATGGAA+AGG - chr2_1:11105323-11105342 Msa0194750:CDS 35.0%
! TGGAAAGGAACACATTTTCA+TGG - chr2_1:11105338-11105357 Msa0194750:CDS 35.0%
AGTTAGTTAGACAGGTTAGA+AGG + chr2_1:11105496-11105515 None:intergenic 35.0%
! GGTTAGTTAGTTAGTTAGAC+AGG + chr2_1:11105504-11105523 None:intergenic 35.0%
GTAAGATTCACAAAAGTAGG+CGG + chr2_1:11105671-11105690 None:intergenic 35.0%
!! TATTTGCAGGTTGATGTTGA+TGG - chr2_1:11105716-11105735 Msa0194750:intron 35.0%
ATATCCATAAGGATTCCCAA+TGG + chr2_1:11105807-11105826 None:intergenic 35.0%
TATGAGAATACTCTCACAAC+AGG - chr2_1:11105824-11105843 Msa0194750:intron 35.0%
ATGAGAATACTCTCACAACA+GGG - chr2_1:11105825-11105844 Msa0194750:intron 35.0%
AGATGAAGGATGAAAATCTG+TGG - chr2_1:11105946-11105965 Msa0194750:intron 35.0%
! GTAAGCTATACCCTTATTTG+TGG - chr2_1:11106190-11106209 Msa0194750:CDS 35.0%
TCAAATGCGACGATTATTGT+GGG + chr2_1:11106302-11106321 None:intergenic 35.0%
! CTTTGTTTGGTAAAAGGTAG+CGG - chr2_1:11106465-11106484 Msa0194750:intron 35.0%
!! AGAATTCTAAGAAGCATTGG+GGG + chr2_1:11106963-11106982 None:intergenic 35.0%
!! GAGAATTCTAAGAAGCATTG+GGG + chr2_1:11106964-11106983 None:intergenic 35.0%
!! GGAGAATTCTAAGAAGCATT+GGG + chr2_1:11106965-11106984 None:intergenic 35.0%
! TGGAGAATTCTAAGAAGCAT+TGG + chr2_1:11106966-11106985 None:intergenic 35.0%
CTATGATCAGAAGTAAAGGA+TGG + chr2_1:11107013-11107032 None:intergenic 35.0%
CATCCTTTACTTCTGATCAT+AGG - chr2_1:11107011-11107030 Msa0194750:intron 35.0%
AGTCCTATGATCAGAAGTAA+AGG + chr2_1:11107017-11107036 None:intergenic 35.0%
ATGTTAACAGGAAATTCAGG+CGG - chr2_1:11107069-11107088 Msa0194750:intron 35.0%
CTTCTAATTACAGAGTCGAT+GGG + chr2_1:11107430-11107449 None:intergenic 35.0%
ACTTCTAATTACAGAGTCGA+TGG + chr2_1:11107431-11107450 None:intergenic 35.0%
GTACCATCCCTTATTGTATA+TGG - chr2_1:11107451-11107470 Msa0194750:CDS 35.0%
GTTCCATATACAATAAGGGA+TGG + chr2_1:11107457-11107476 None:intergenic 35.0%
! CAAGTCTTGTAGTTGCTTCT+TGG - chr2_1:11101740-11101759 Msa0194750:intron 40.0%
AGCTGTTGTGAAAGTGAAAG+TGG + chr2_1:11101796-11101815 None:intergenic 40.0%
TCAATTAGGCCTCTAGTTGA+TGG + chr2_1:11102084-11102103 None:intergenic 40.0%
GCGCCAACAATTCTTGTATT+GGG + chr2_1:11102136-11102155 None:intergenic 40.0%
TGCGCCAACAATTCTTGTAT+TGG + chr2_1:11102137-11102156 None:intergenic 40.0%
ATACAAGAATTGTTGGCGCA+TGG - chr2_1:11102137-11102156 Msa0194750:intron 40.0%
TACAAGAATTGTTGGCGCAT+GGG - chr2_1:11102138-11102157 Msa0194750:intron 40.0%
ATGAACTAAACCCTAGGGAT+TGG + chr2_1:11102225-11102244 None:intergenic 40.0%
TGTCGAACATGTGTCAATGT+CGG + chr2_1:11102590-11102609 None:intergenic 40.0%
ATTGACACATGTTCGACAGT+GGG - chr2_1:11102592-11102611 Msa0194750:intron 40.0%
GCACAGATACTATTCGGATT+AGG + chr2_1:11102623-11102642 None:intergenic 40.0%
CAATTGTGGTCGCACTTTAA+AGG + chr2_1:11102674-11102693 None:intergenic 40.0%
TTGTCAATCTCCACATGCAT+TGG + chr2_1:11102742-11102761 None:intergenic 40.0%
GTTCTCCAACACATACGAAA+TGG - chr2_1:11102811-11102830 Msa0194750:intron 40.0%
TGAGGATGAAGATGCAAAAG+TGG - chr2_1:11102962-11102981 Msa0194750:CDS 40.0%
GATGAAGATGCAAAAGTGGA+AGG - chr2_1:11102966-11102985 Msa0194750:CDS 40.0%
! ACGACGCTTTAGATTAAGGT+TGG - chr2_1:11103136-11103155 Msa0194750:intron 40.0%
! GCTTTAGATTAAGGTTGGTC+CGG - chr2_1:11103141-11103160 Msa0194750:intron 40.0%
CAACGATATGTTTCGAACAC+CGG + chr2_1:11103163-11103182 None:intergenic 40.0%
TTGAGTGTAACCACATGTGT+CGG + chr2_1:11103204-11103223 None:intergenic 40.0%
TGCATACGTGCCTTACATTT+AGG + chr2_1:11103429-11103448 None:intergenic 40.0%
AAACTAGCTACCGATACTAG+TGG - chr2_1:11103599-11103618 Msa0194750:intron 40.0%
!! GTTTTCCTAGTTGATGCCAA+TGG - chr2_1:11103727-11103746 Msa0194750:intron 40.0%
TATTCCCATTGGCATCAACT+AGG + chr2_1:11103735-11103754 None:intergenic 40.0%
CCTGGAAAAGTTATTCCCAT+TGG + chr2_1:11103746-11103765 None:intergenic 40.0%
! CCAATGGGAATAACTTTTCC+AGG - chr2_1:11103743-11103762 Msa0194750:intron 40.0%
! GGAATAACTTTTCCAGGGAA+GGG - chr2_1:11103749-11103768 Msa0194750:intron 40.0%
TCCAGGGAAGGGAAAATAAT+TGG - chr2_1:11103760-11103779 Msa0194750:intron 40.0%
CCAGGGAAGGGAAAATAATT+GGG - chr2_1:11103761-11103780 Msa0194750:intron 40.0%
!! GGCATGTTATGGTAATGGAT+TGG + chr2_1:11103936-11103955 None:intergenic 40.0%
CTATCTACACTTAGTGTAGC+TGG - chr2_1:11104180-11104199 Msa0194750:intron 40.0%
ATCGAAAGACCCTAGTAAGT+TGG - chr2_1:11104645-11104664 Msa0194750:intron 40.0%
GATAATTTAGGAGGAAACCC+TGG - chr2_1:11104818-11104837 Msa0194750:intron 40.0%
TAATATGACGAGGAGAAGAG+GGG - chr2_1:11104934-11104953 Msa0194750:intron 40.0%
TAGCTGATGCAACTGTACTA+TGG - chr2_1:11105049-11105068 Msa0194750:intron 40.0%
AGAATACAGAATGGCAGATC+CGG + chr2_1:11105099-11105118 None:intergenic 40.0%
TTAGACAGGTTAGAAGGACA+GGG + chr2_1:11105490-11105509 None:intergenic 40.0%
TTTGCCATTGGGAATCCTTA+TGG - chr2_1:11105800-11105819 Msa0194750:intron 40.0%
TGAGAATACTCTCACAACAG+GGG - chr2_1:11105826-11105845 Msa0194750:intron 40.0%
AGAGTTCTTAGCAGATTCAG+AGG + chr2_1:11105902-11105921 None:intergenic 40.0%
TGCGATGTAAATTATGCAGG+TGG - chr2_1:11106083-11106102 Msa0194750:intron 40.0%
TAAATTATGCAGGTGGTCAG+TGG - chr2_1:11106090-11106109 Msa0194750:intron 40.0%
ACTGATGCAGCTATTAATGC+AGG - chr2_1:11106168-11106187 Msa0194750:CDS 40.0%
CCAACAAATGCTTGGTATTG+AGG + chr2_1:11106231-11106250 None:intergenic 40.0%
CCTCAATACCAAGCATTTGT+TGG - chr2_1:11106228-11106247 Msa0194750:CDS 40.0%
GACGATTATTGTGGGTCAAA+GGG + chr2_1:11106294-11106313 None:intergenic 40.0%
GTCAAATGCGACGATTATTG+TGG + chr2_1:11106303-11106322 None:intergenic 40.0%
!! CGCAAGCTTTGTTTGGTAAA+AGG - chr2_1:11106459-11106478 Msa0194750:intron 40.0%
!! AAGGTAGCGGATAGTTAACA+AGG - chr2_1:11106478-11106497 Msa0194750:intron 40.0%
CGGATGTTAACAGGAAATTC+AGG - chr2_1:11107066-11107085 Msa0194750:intron 40.0%
CTGTGTTTACTCCAACAACA+TGG + chr2_1:11107116-11107135 None:intergenic 40.0%
ATTACCTTTCCTTGTGAAGG+TGG + chr2_1:11107139-11107158 None:intergenic 40.0%
GAGAGGGAAAGAGGTTCATT+TGG + chr2_1:11101636-11101655 None:intergenic 45.0%
! TGAGTAGTTAGCGTTGGAGA+GGG + chr2_1:11101652-11101671 None:intergenic 45.0%
! ATGAGTAGTTAGCGTTGGAG+AGG + chr2_1:11101653-11101672 None:intergenic 45.0%
GAGGAATGAGTAGTTAGCGT+TGG + chr2_1:11101658-11101677 None:intergenic 45.0%
CTTAGTAGCTGTAACAGTGG+TGG + chr2_1:11101698-11101717 None:intergenic 45.0%
TCGCTTAGTAGCTGTAACAG+TGG + chr2_1:11101701-11101720 None:intergenic 45.0%
CCTGAAACAAATGCACAAGG+TGG + chr2_1:11101846-11101865 None:intergenic 45.0%
CCACCTTGTGCATTTGTTTC+AGG - chr2_1:11101843-11101862 Msa0194750:intron 45.0%
!! CCTCTAGTTGATGGTGAGAT+TGG + chr2_1:11102075-11102094 None:intergenic 45.0%
CCAATCTCACCATCAACTAG+AGG - chr2_1:11102072-11102091 Msa0194750:intron 45.0%
! TGCGCTCTTTTCTAGGTCTT+AGG + chr2_1:11102173-11102192 None:intergenic 45.0%
TGTCTGTGACCGTGTTTCAT+AGG + chr2_1:11102487-11102506 None:intergenic 45.0%
ATGAAACACGGTCACAGACA+TGG - chr2_1:11102487-11102506 Msa0194750:intron 45.0%
GTCACAGACATGGAAAGACA+CGG - chr2_1:11102497-11102516 Msa0194750:intron 45.0%
CATTGACACATGTTCGACAG+TGG - chr2_1:11102591-11102610 Msa0194750:intron 45.0%
!! CACTGGTTCAGGCTTCATTT+GGG - chr2_1:11102989-11103008 Msa0194750:CDS 45.0%
!! GTCGGTGTTGTGTTAATGTC+TGG + chr2_1:11103186-11103205 None:intergenic 45.0%
TAACACAACACCGACACATG+TGG - chr2_1:11103191-11103210 Msa0194750:intron 45.0%
! GGGAATAACTTTTCCAGGGA+AGG - chr2_1:11103748-11103767 Msa0194750:intron 45.0%
! CCCAATTATTTTCCCTTCCC+TGG + chr2_1:11103764-11103783 None:intergenic 45.0%
CTTACTGGGACAGAATAGGA+GGG + chr2_1:11104717-11104736 None:intergenic 45.0%
TCTTACTGGGACAGAATAGG+AGG + chr2_1:11104718-11104737 None:intergenic 45.0%
GACACGACCAAATGAGCTAA+CGG - chr2_1:11104860-11104879 Msa0194750:intron 45.0%
ACACGACCAAATGAGCTAAC+GGG - chr2_1:11104861-11104880 Msa0194750:intron 45.0%
ATATTAAAAGGGCCCAGGTG+TGG + chr2_1:11104920-11104939 None:intergenic 45.0%
TCGTCATATTAAAAGGGCCC+AGG + chr2_1:11104925-11104944 None:intergenic 45.0%
! TGGGCCCTTTTAATATGACG+AGG - chr2_1:11104924-11104943 Msa0194750:intron 45.0%
ATTCTTGGACGGAGCAAATG+AGG + chr2_1:11104996-11105015 None:intergenic 45.0%
CTGATGCAACTGTACTATGG+TGG - chr2_1:11105052-11105071 Msa0194750:intron 45.0%
! AGCTTCTAGAAGAGTAGACC+AGG + chr2_1:11105170-11105189 None:intergenic 45.0%
! TGGTCTACTCTTCTAGAAGC+TGG - chr2_1:11105169-11105188 Msa0194750:intron 45.0%
GTTAGACAGGTTAGAAGGAC+AGG + chr2_1:11105491-11105510 None:intergenic 45.0%
! GACAGAGTTGCTTTGCCATT+GGG - chr2_1:11105789-11105808 Msa0194750:intron 45.0%
AGATACCTTCCCCAAATGGA+GGG - chr2_1:11106124-11106143 Msa0194750:CDS 45.0%
! TTTGATAGCCCCTCCATTTG+GGG + chr2_1:11106136-11106155 None:intergenic 45.0%
! CTTTGATAGCCCCTCCATTT+GGG + chr2_1:11106137-11106156 None:intergenic 45.0%
GCAACAAGCCAACAAATGCT+TGG + chr2_1:11106239-11106258 None:intergenic 45.0%
!! TTTGTTGGCTTGTTGCCCTA+TGG - chr2_1:11106243-11106262 Msa0194750:intron 45.0%
CGACGATTATTGTGGGTCAA+AGG + chr2_1:11106295-11106314 None:intergenic 45.0%
GGCAAAAGTAAAGTGACCGT+TGG + chr2_1:11106942-11106961 None:intergenic 45.0%
TATGATCTTGTGTTCGCGCA+CGG - chr2_1:11107046-11107065 Msa0194750:intron 45.0%
! GGACCATTGATTGACTCTCA+TGG - chr2_1:11107090-11107109 Msa0194750:intron 45.0%
TGGCCATGAGAGTCAATCAA+TGG + chr2_1:11107096-11107115 None:intergenic 45.0%
TAAACACAGCCACCTTCACA+AGG - chr2_1:11107127-11107146 Msa0194750:intron 45.0%
GTTAACTCCTGATGAAGCTC+CGG + chr2_1:11107398-11107417 None:intergenic 45.0%
! TTAGCGTTGGAGAGGGAAAG+AGG + chr2_1:11101645-11101664 None:intergenic 50.0%
!! TGTAACAGTGGTGGTGGGAA+GGG + chr2_1:11101689-11101708 None:intergenic 50.0%
GTAGCTGTAACAGTGGTGGT+GGG + chr2_1:11101694-11101713 None:intergenic 50.0%
AGTAGCTGTAACAGTGGTGG+TGG + chr2_1:11101695-11101714 None:intergenic 50.0%
!! CAAGGAGTGCGCTCTTTTCT+AGG + chr2_1:11102180-11102199 None:intergenic 50.0%
! CTAGAAAAGAGCGCACTCCT+TGG - chr2_1:11102178-11102197 Msa0194750:intron 50.0%
GGGGCAAATGCAAGCAAATG+CGG - chr2_1:11102435-11102454 Msa0194750:intron 50.0%
CAACTACAATTGTGGCCGAC+TGG + chr2_1:11102461-11102480 None:intergenic 50.0%
GTCGCTTGCAACTGCAATTG+TGG + chr2_1:11102688-11102707 None:intergenic 50.0%
! GATGCAAAAGTGGAAGGCAC+TGG - chr2_1:11102972-11102991 Msa0194750:CDS 50.0%
!! AAAGTGGAAGGCACTGGTTC+AGG - chr2_1:11102978-11102997 Msa0194750:CDS 50.0%
!! GCACTGGTTCAGGCTTCATT+TGG - chr2_1:11102988-11103007 Msa0194750:CDS 50.0%
!! TGGAGCACTGACACGTATAC+AGG + chr2_1:11103290-11103309 None:intergenic 50.0%
CACGACCAAATGAGCTAACG+GGG - chr2_1:11104862-11104881 Msa0194750:intron 50.0%
ACGACCAAATGAGCTAACGG+GGG - chr2_1:11104863-11104882 Msa0194750:intron 50.0%
AAACCCCCCGTTAGCTCATT+TGG + chr2_1:11104870-11104889 None:intergenic 50.0%
GGACGAGTCTCCTTGAAAAG+AGG + chr2_1:11104899-11104918 None:intergenic 50.0%
AGTGACATGGAAGCCACATG+TGG + chr2_1:11104963-11104982 None:intergenic 50.0%
AGGTGTAGCGTCAAGTGACA+TGG + chr2_1:11104976-11104995 None:intergenic 50.0%
ACAGGTTAGAAGGACAGGGA+TGG + chr2_1:11105486-11105505 None:intergenic 50.0%
! GGACAGAGTTGCTTTGCCAT+TGG - chr2_1:11105788-11105807 Msa0194750:intron 50.0%
ATGCAGGTGGTCAGTGGTTT+AGG - chr2_1:11106096-11106115 Msa0194750:intron 50.0%
!! CATTTGGGGAAGGTATCTCG+CGG + chr2_1:11106122-11106141 None:intergenic 50.0%
GAGATACCTTCCCCAAATGG+AGG - chr2_1:11106123-11106142 Msa0194750:CDS 50.0%
GATACCTTCCCCAAATGGAG+GGG - chr2_1:11106125-11106144 Msa0194750:CDS 50.0%
! CCTTTGATAGCCCCTCCATT+TGG + chr2_1:11106138-11106157 None:intergenic 50.0%
CCAAATGGAGGGGCTATCAA+AGG - chr2_1:11106135-11106154 Msa0194750:CDS 50.0%
!! CGATGCACGCAAGCTTTGTT+TGG - chr2_1:11106452-11106471 Msa0194750:intron 50.0%
GACTCTCATGGCCATGTTGT+TGG - chr2_1:11107102-11107121 Msa0194750:intron 50.0%
ACAGCCACCTTCACAAGGAA+AGG - chr2_1:11107132-11107151 Msa0194750:intron 50.0%
GGTGGGAAGGGTCTTTGTTG+AGG + chr2_1:11101677-11101696 None:intergenic 55.0%
!! CTGTAACAGTGGTGGTGGGA+AGG + chr2_1:11101690-11101709 None:intergenic 55.0%
!! CTAAACCCTAGGGATTGGCC+TGG + chr2_1:11102220-11102239 None:intergenic 55.0%
TGCAAGCAAATGCGGCCAGT+CGG - chr2_1:11102443-11102462 Msa0194750:intron 55.0%
GTGGTGACAGCTCACAACCA+GGG + chr2_1:11104838-11104857 None:intergenic 55.0%
GCTCATTTGGTCGTGTCACG+TGG + chr2_1:11104857-11104876 None:intergenic 55.0%
CGACCAAATGAGCTAACGGG+GGG - chr2_1:11104864-11104883 Msa0194750:intron 55.0%
AAGGAGACTCGTCCACACCT+GGG - chr2_1:11104905-11104924 Msa0194750:intron 55.0%
GACATGGAAGCCACATGTGG+CGG + chr2_1:11104960-11104979 None:intergenic 55.0%
CGCGAGATACCTTCCCCAAA+TGG - chr2_1:11106120-11106139 Msa0194750:CDS 55.0%
ATAGCCCCTCCATTTGGGGA+AGG + chr2_1:11106132-11106151 None:intergenic 55.0%
GTTCGCGCACGGATGTTAAC+AGG - chr2_1:11107057-11107076 Msa0194750:intron 55.0%
!! TCAGGTACCGGAGCTTCATC+AGG - chr2_1:11107388-11107407 Msa0194750:CDS 55.0%
GTGGTGAAGGCTTGGGACCA+AGG + chr2_1:11102198-11102217 None:intergenic 60.0%
! TGGCCTGGTGGTGAAGGCTT+GGG + chr2_1:11102205-11102224 None:intergenic 60.0%
! TTGGCCTGGTGGTGAAGGCT+TGG + chr2_1:11102206-11102225 None:intergenic 60.0%
!! AGGGATTGGCCTGGTGGTGA+AGG + chr2_1:11102211-11102230 None:intergenic 60.0%
TCACCACCAGGCCAATCCCT+AGG - chr2_1:11102211-11102230 Msa0194750:intron 60.0%
CACCACCAGGCCAATCCCTA+GGG - chr2_1:11102212-11102231 Msa0194750:intron 60.0%
!! AACCCTAGGGATTGGCCTGG+TGG + chr2_1:11102217-11102236 None:intergenic 60.0%
CGTGGTGACAGCTCACAACC+AGG + chr2_1:11104839-11104858 None:intergenic 60.0%
CAAGGAGACTCGTCCACACC+TGG - chr2_1:11104904-11104923 Msa0194750:intron 60.0%
GGTCCCAAGCCTTCACCACC+AGG - chr2_1:11102199-11102218 Msa0194750:intron 65.0%
AGAAGAGGGGCCGCCACATG+TGG - chr2_1:11104947-11104966 Msa0194750:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11101509 11107623 11101509 ID=Msa0194750;Name=Msa0194750
chr2_1 mRNA 11101509 11107623 11101509 ID=Msa0194750-mRNA-1;Parent=Msa0194750;Name=Msa0194750-mRNA-1;_AED=0.27;_eAED=0.27;_QI=86|1|1|1|1|1|8|125|321
chr2_1 exon 11101509 11101740 11101509 ID=Msa0194750-mRNA-1:exon:4975;Parent=Msa0194750-mRNA-1
chr2_1 exon 11101979 11102053 11101979 ID=Msa0194750-mRNA-1:exon:4974;Parent=Msa0194750-mRNA-1
chr2_1 exon 11102943 11103030 11102943 ID=Msa0194750-mRNA-1:exon:4973;Parent=Msa0194750-mRNA-1
chr2_1 exon 11103285 11103407 11103285 ID=Msa0194750-mRNA-1:exon:4972;Parent=Msa0194750-mRNA-1
chr2_1 exon 11105316 11105405 11105316 ID=Msa0194750-mRNA-1:exon:4971;Parent=Msa0194750-mRNA-1
chr2_1 exon 11105495 11105557 11105495 ID=Msa0194750-mRNA-1:exon:4970;Parent=Msa0194750-mRNA-1
chr2_1 exon 11106104 11106253 11106104 ID=Msa0194750-mRNA-1:exon:4969;Parent=Msa0194750-mRNA-1
chr2_1 exon 11107268 11107623 11107268 ID=Msa0194750-mRNA-1:exon:4968;Parent=Msa0194750-mRNA-1
chr2_1 five_prime_UTR 11107538 11107623 11107538 ID=Msa0194750-mRNA-1:five_prime_utr;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11107268 11107537 11107268 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11106104 11106253 11106104 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11105495 11105557 11105495 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11105316 11105405 11105316 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11103285 11103407 11103285 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11102943 11103030 11102943 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11101979 11102053 11101979 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 CDS 11101634 11101740 11101634 ID=Msa0194750-mRNA-1:cds;Parent=Msa0194750-mRNA-1
chr2_1 three_prime_UTR 11101509 11101633 11101509 ID=Msa0194750-mRNA-1:three_prime_utr;Parent=Msa0194750-mRNA-1
Gene Sequence

>Msa0194750

ATGGTTGCAACAAAACCAATCATCACAATGTTTTCTCTCCAAATGAACCTCTTTCCCTCTCCAACGCTAACTACTCATTCCTCAACAAAGACCCTTCCCACCACCACTGTTACAGCTACTAAGCGAAGAGCCATAGTCTTCAGTTCAAGTCTTGTAGTTGCTTCTTGGCTTAATTTCCTTAATTTCAATTCAACACAACCACTTTCACTTTCACAACAGCTACAAGATGAACTTCAACAACAAGAAGACCACCTTGTGCATTTGTTTCAGGAAACTTCACCATCTGTTGTTTCCATTAAAGACATTGAATTGACTAAAGTCCCCAAAACCTCTTCTAATGAAGTCATGCTAGATGAGGATGAAGATGCAAAAGTGGAAGGCACTGGTTCAGGCTTCATTTGGGATAAATTTGGCCACATAGTTACCAATTACCATGTTGTAGCTAAACTAGCTACCGATACTAGTGGTTTACAACGTTGTAAGGTTTTCCTAGTTGATGCCAATGGGAATAACTTTTCCAGGGAAGGGAAAATAATTGGGTTTGATCCATCATATGATCTAGCTGTTCTGAAGGTTGATGTTGATGGATACGAAATAAAGCCTGTTGTTATTGGTGAATCTAAGAATTTACATGTTGGACAGAGTTGCTTTGCCATTGGGAATCCTTATGGATATGAGAATACTCTCACAACAGGGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCCCCAAATGGAGGGGCTATCAAAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGAAATTCAGGCGGACCATTGATTGACTCTCATGGCCATGTTGTTGGAGTAAACACAGCCACCTTCACAAGGAAAGGTACCGGAGCTTCATCAGGAGTTAACTTTGCAATTCCCATCGACTCTGTAATTAGAAGTGTACCATCCCTTATTGTATATGGAACACCTTATACTAATAGGTTTTGA

Protein sequence

>Msa0194750

MVATKPIITMFSLQMNLFPSPTLTTHSSTKTLPTTTVTATKRRAIVFSSSLVVASWLNFLNFNSTQPLSLSQQLQDELQQQEDHLVHLFQETSPSVVSIKDIELTKVPKTSSNEVMLDEDEDAKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTSGLQRCKVFLVDANGNNFSREGKIIGFDPSYDLAVLKVDVDGYEIKPVVIGESKNLHVGQSCFAIGNPYGYENTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGPLIDSHGHVVGVNTATFTRKGTGASSGVNFAIPIDSVIRSVPSLIVYGTPYTNRF*